BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030489
         (176 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 107/220 (48%), Positives = 136/220 (61%), Gaps = 48/220 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E HL+AAL LF  + +RG +PD+ T+NT+IC YC+  RLD+AVQLF K+T  QL+PN+I
Sbjct: 634 REGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAI 693

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN-MKSAFDVYEE 122
           TFTILIDAFC+EGRMDDA +MFSKMLE+GP+ N+VTYSCLI GYFKSQ+ M+S   +Y E
Sbjct: 694 TFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNE 753

Query: 123 MCENNISPNI-----------------------------------------------AGR 135
           M ENNI+PNI                                                GR
Sbjct: 754 MLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGR 813

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            TEAM LYD+ML N + PD  L  TL +Y L+ +G++  C
Sbjct: 814 LTEAMMLYDNMLLNRLTPDRFLERTLEEYQLKKAGAKHLC 853



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 97/172 (56%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  AL+ F Q  +RGL P++ T NT++  +C L  +  A++++  +  + +K +
Sbjct: 492 LCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKAD 551

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+TILI    + GR+D+A M+F +ML+K  K +V+TY  LIDG  K +   +   +++
Sbjct: 552 TVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFD 611

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            MC+N ++P+IA            G    A+ L+  ++  G  PD    +T+
Sbjct: 612 FMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTM 663



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  +   G +P+++T++T+I  YC    LD+A  LF+ +    + P+ I ++ILID   K
Sbjct: 295 FNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFK 354

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA- 133
            GR++D   +    L+KG K +VV +S  +D Y K  ++     +Y+ M    ISPN+  
Sbjct: 355 AGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVS 414

Query: 134 -----------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      GR  EA  L+  +L+ G  P  L  S L
Sbjct: 415 CSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSAL 453



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF Q+   G EP I+TY+ +I G+C    L +   L+E +   + +P++I +++LI+
Sbjct: 431 ACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLIN 490

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G + DA   F + + +G   NV T + L+D + + + +  A  VY  M   NI  
Sbjct: 491 GLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKA 550

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +              GR  EA+ L+  ML+    PD +   TL D
Sbjct: 551 DTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLID 595



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+   +L     D+G++ D++ +++ +  Y  +  L   +Q+++++    + PN
Sbjct: 352 LFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPN 411

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++ +ILI  FC+ GR+ +A  +F ++L+ G + +++TYS LI G+ KS N++  F +YE
Sbjct: 412 VVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYE 471

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +    P+              G   +A++ +   +  G+ P+   L+TL D
Sbjct: 472 DMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLD 525



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++  L+    L   G   DIIT N I+ G    N +  A   F  +  +  KPN +TF+ 
Sbjct: 253 VEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFST 312

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA+CKEG +D A ++F  M   G   +++ YS LIDG FK+  ++    +     +  
Sbjct: 313 LIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKG 372

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           I  ++ G  +              +Q+Y  ML  GI P+ +  S L     Q+    E C
Sbjct: 373 IKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEAC 432


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  195 bits (495), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 99/219 (45%), Positives = 132/219 (60%), Gaps = 47/219 (21%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  +E  ++  L+L  ++   GLEPDI+TYNT+ICGYCSL    +A++LFE L C + +P
Sbjct: 599 MFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQP 658

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ITFTILIDA+CK+GRMDDA ++FS MLE+GP+ N++TYSCLIDGYFK++N +SAF++Y
Sbjct: 659 NAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELY 718

Query: 121 EEMCENNISPNI-----------------------------------------------A 133
           E+M  + +SPNI                                                
Sbjct: 719 EKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKV 778

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           GR  EAM LYD ML NGIMPD LL   LA+Y  Q S ++
Sbjct: 779 GRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQAK 817



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A   F  +   G  P+++T++T+I  YC   RLDEA  L+  +    + P+ + ++
Sbjct: 255 QIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYS 314

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+   + G++++   +FS  L +G K +VV +S ++D Y +  ++  A +VY  M + 
Sbjct: 315 ILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE 374

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN+             GR  EA  ++  +L+ G+ P  L  S+L D
Sbjct: 375 GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLID 423



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L+    LF     RG++ D++ +++I+  Y  +  L +A++++ ++    + PN
Sbjct: 320 LFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPN 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ILI+  C+ GR+ +A  +F ++L++G + +V+TYS LIDG+ KS+N++  F +Y 
Sbjct: 380 VVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYG 439

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P++             G   EA++ +   ++ G+  +  L + L D
Sbjct: 440 IMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALID 493



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A  L+  + ++G+ PD++ Y+ +I G     +L+E   LF       +K + +
Sbjct: 287 KELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVV 346

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F+ ++DA+ + G +  A  ++++ML++G   NVVTYS LI+G  ++  +  A  V+ ++
Sbjct: 347 IFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQI 406

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + P++    +            +   LY  MLR G +PD ++ S L +
Sbjct: 407 LKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLIN 458



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +FGQ+  +GLEP ++TY+++I G+C    L +   L+  +      P+ +  ++LI+
Sbjct: 399 ACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLIN 458

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              ++G MD+A   F + +++G   N   ++ LIDG F+ +  +    +Y  M    + P
Sbjct: 459 GLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIP 518

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             GR  EA+ L+  +L+ G  PD ++  TL D
Sbjct: 519 DVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLID 563



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D AL+ F Q   RGL  +   +N +I G   L R  + ++++  +   ++ P+
Sbjct: 460 LSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPD 519

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+L+    ++GR+D+A  +F ++L+KG   + + Y  LIDG+ K ++  +   +++
Sbjct: 520 VVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFK 579

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I P+I             G     ++L   +++ G+ PD +  +T+
Sbjct: 580 LMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTM 631



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 12/183 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  LD AL LF QL  +G  PD I Y T+I G+C        +Q+F+ +    + P+
Sbjct: 530 LAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPD 589

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + +LI+ F +EG +++   +  ++++ G + ++VTY+ +I GY   +    A  ++E
Sbjct: 590 ICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFE 649

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            +      PN              GR  +AM ++ SML  G  P+ L  S L D   ++ 
Sbjct: 650 VLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTE 709

Query: 170 GSQ 172
            ++
Sbjct: 710 NTE 712



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 47/174 (27%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   ++  L     L +RGL P I+  N I+ G C  N++  A   F+          
Sbjct: 215 FLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDM--------- 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                                     M+  GP  N+VT+S LI+ Y K   +  AF +Y 
Sbjct: 266 --------------------------MVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYN 299

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E  I P++            AG+  E   L+   L  G+  D ++ S++ D
Sbjct: 300 LMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMD 353


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 130/216 (60%), Gaps = 47/216 (21%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  +E  ++  L+L  ++   GLEPDI+TYNT+ICGYCSL    +A++LFE L C + +P
Sbjct: 599 MFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQP 658

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ITFTILIDA+CK+GRMDDA ++FS MLE+GP+ N++TYSCLIDGYFK++N +SAF++Y
Sbjct: 659 NAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELY 718

Query: 121 EEMCENNISPNI-----------------------------------------------A 133
           E+M  + +SPNI                                                
Sbjct: 719 EKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKV 778

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           GR  EAM LYD ML NGIMPD LL   LA+Y  Q S
Sbjct: 779 GRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDS 814



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A   F  +   G  P+++T++T+I  YC   RLDEA  L+  +    + P+ + ++
Sbjct: 255 QIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYS 314

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+   + G++++   +FS  L +G K +VV +S ++D Y +  ++  A +VY  M + 
Sbjct: 315 ILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE 374

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN+             GR  EA  ++  +L+ G+ P  L  S+L D
Sbjct: 375 GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLID 423



 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L+    LF     RG++ D++ +++I+  Y  +  L +A++++ ++    + PN
Sbjct: 320 LFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPN 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ILI+  C+ GR+ +A  +F ++L++G + +V+TYS LIDG+ KS+N++  F +Y 
Sbjct: 380 VVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYG 439

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P++             G   EA++ +   ++ G+  +  L + L D
Sbjct: 440 IMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALID 493



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A  L+  + ++G+ PD++ Y+ +I G     +L+E   LF       +K + +
Sbjct: 287 KELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVV 346

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F+ ++DA+ + G +  A  ++++ML++G   NVVTYS LI+G  ++  +  A  V+ ++
Sbjct: 347 IFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQI 406

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + P++    +            +   LY  MLR G +PD ++ S L +
Sbjct: 407 LKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLIN 458



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +FGQ+  +GLEP ++TY+++I G+C    L +   L+  +      P+ +  ++LI+
Sbjct: 399 ACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLIN 458

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              ++G MD+A   F + +++G   N   ++ LIDG F+ +  +    +Y  M    + P
Sbjct: 459 GLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIP 518

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             GR  EA+ L+  +L+ G  PD ++  TL D
Sbjct: 519 DVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLID 563



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D AL+ F Q   RGL  +   +N +I G   L R  + ++++  +   ++ P+
Sbjct: 460 LSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPD 519

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+L+    ++GR+D+A  +F ++L+KG   + + Y  LIDG+ K ++  +   +++
Sbjct: 520 VVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFK 579

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I P+I             G     ++L   +++ G+ PD +  +T+
Sbjct: 580 LMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTM 631



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 12/183 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  LD AL LF QL  +G  PD I Y T+I G+C        +Q+F+ +    + P+
Sbjct: 530 LAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPD 589

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + +LI+ F +EG +++   +  ++++ G + ++VTY+ +I GY   +    A  ++E
Sbjct: 590 ICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFE 649

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            +      PN              GR  +AM ++ SML  G  P+ L  S L D   ++ 
Sbjct: 650 VLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTE 709

Query: 170 GSQ 172
            ++
Sbjct: 710 NTE 712



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 47/174 (27%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   ++  L     L +RGL P I+  N I+ G C  N++  A   F+          
Sbjct: 215 FLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDM--------- 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                                     M+  GP  N+VT+S LI+ Y K   +  AF +Y 
Sbjct: 266 --------------------------MVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYN 299

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E  I P++            AG+  E   L+   L  G+  D ++ S++ D
Sbjct: 300 LMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMD 353



 Score = 43.1 bits (100), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R L PD+I Y  +I GYC + RL EA+ L++ +    + P+     +L  A  + G  D 
Sbjct: 759 RHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDD----LLQKALAEYGFQDS 814

Query: 81  ATMMFSKMLEKGP 93
              ++S +  + P
Sbjct: 815 QASIYSTVFPESP 827


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 115/225 (51%), Gaps = 52/225 (23%)

Query: 2   LIKECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L+ +CH ++ A K F  L +  +EPDI+TYNT+ICGYCSL RLDEA ++FE L      P
Sbjct: 610 LLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGP 669

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++T TILI   CK   MD A  MFS M EKG K N VTY CL+D + KS +++ +F ++
Sbjct: 670 NTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLF 729

Query: 121 EEMCENNISPNI-----------------------------------------------A 133
           EEM E  ISP+I                                                
Sbjct: 730 EEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKV 789

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN----LQSSGSQEH 174
           GR  EA  LY+ MLRNG+ PD LL   L++YN    L S G   H
Sbjct: 790 GRLVEAALLYEHMLRNGVKPDDLLQRALSEYNPPKWLMSKGVWVH 834



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  ++GQ+  RG+EP I+TY+++I G+C    L     L+E +  +   P+ + + +L+D
Sbjct: 410 AFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVD 469

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K+G M  A     KML +  + NVV ++ LIDG+ +      A  V+  M    I P
Sbjct: 470 GLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKP 529

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++A            GR  EA+ L+  M + G+ PD L   TL D
Sbjct: 530 DVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLID 574



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A +L   + D G  P+++T+ T+I G+C    +D A  LF+ +    ++P+ I ++
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K G +     +FS+ L KG K +VV +S  ID Y KS ++ +A  VY+ M   
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN+             GR  EA  +Y  +L+ G+ P  +  S+L D
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLID 434



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 44/193 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF------------- 50
           K   +D A  LF  +  RG+EPD+I Y+T+I GY     L    +LF             
Sbjct: 298 KRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVV 357

Query: 51  ----------------------EKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                                 +++ C  + PN +T+TILI   C++GR+ +A  M+ ++
Sbjct: 358 VFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQI 417

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLR 148
           L++G + ++VTYS LIDG+ K  N++S F +YE+M +    P++         +Y  +L 
Sbjct: 418 LKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVV--------IY-GVLV 468

Query: 149 NGIMPDGLLLSTL 161
           +G+   GL+L  +
Sbjct: 469 DGLSKQGLMLHAM 481



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 86/163 (52%), Gaps = 16/163 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++K+ GQ     +  +++ +N++I G+C LNR DEA+++F  +    +KP+  TFT ++ 
Sbjct: 484 SVKMLGQ----SIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMR 539

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
               EGR+++A  +F +M + G + + + Y  LID + K         +++ M  N IS 
Sbjct: 540 VSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISA 599

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +IA             R  +A + +++++   + PD +  +T+
Sbjct: 600 DIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTM 642



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             D ALK+F  +   G++PD+ T+ T++       RL+EA+ LF ++  + L+P+++ + 
Sbjct: 511 RFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYC 570

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LIDAFCK  +      +F  M      A++   + +I   FK   ++ A   +  + E 
Sbjct: 571 TLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEG 630

Query: 127 NISPNIA 133
            + P+I 
Sbjct: 631 KMEPDIV 637


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 115/225 (51%), Gaps = 52/225 (23%)

Query: 2   LIKECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L+ +CH ++ A K F  L +  +EPDI+TYNT+ICGYCSL RLDEA ++FE L      P
Sbjct: 581 LLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGP 640

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++T TILI   CK   MD A  MFS M EKG K N VTY CL+D + KS +++ +F ++
Sbjct: 641 NTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLF 700

Query: 121 EEMCENNISPNI-----------------------------------------------A 133
           EEM E  ISP+I                                                
Sbjct: 701 EEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKV 760

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN----LQSSGSQEH 174
           GR  EA  LY+ MLRNG+ PD LL   L++YN    L S G   H
Sbjct: 761 GRLVEAALLYEHMLRNGVKPDDLLQRALSEYNPPKWLMSKGVWVH 805



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A +L   + D G  P+++T+ T+I G+C    +D A  LF+ +    ++P+ I ++
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K G +     +FS+ L KG K +VV +S  ID Y KS ++ +A  VY+ M   
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN+             GR  EA  +Y  +L+ G+ P  +  S+L D
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLID 434



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 9/158 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L    KLF Q   +G++ D++ +++ I  Y     L  A  +++++ C  + PN +
Sbjct: 333 KAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVV 392

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI   C++GR+ +A  M+ ++L++G + ++VTYS LIDG+ K  N++S F +YE+M
Sbjct: 393 TYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDM 452

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +    P++         +Y  +L +G+   GL+L  +
Sbjct: 453 IKMGYPPDVV--------IY-GVLVDGLSKQGLMLHAM 481



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 18/162 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  ++GQ+  RG+EP I+TY+++I G+C    L     L+E +  +   P+ + + +L+D
Sbjct: 410 AFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVD 469

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K+G M  A     KML +  + NVV ++ LIDG+ +      A  V+  M    I P
Sbjct: 470 GLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKP 529

Query: 131 NIAG------------------RPTEAMQLYDSMLRNGIMPD 154
           ++A                   +PT  +QL+D M RN I  D
Sbjct: 530 DVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISAD 571



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   L  A  ++ ++  +G+ P+++TY  +I G C   R+ EA  ++ ++    ++P+ 
Sbjct: 367 VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSI 426

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T++ LID FCK G +     ++  M++ G   +VV Y  L+DG  K   M  A     +
Sbjct: 427 VTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVK 486

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M   +I  N+              R  EA++++  M   GI PD    +T+   ++    
Sbjct: 487 MLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDA 546

Query: 171 SQEH 174
             +H
Sbjct: 547 FCKH 550



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 57/211 (27%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT---- 66
           ++K+ GQ     +  +++ +N++I G+C LNR DEA+++F  +    +KP+  TFT    
Sbjct: 484 SVKMLGQ----SIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMR 539

Query: 67  --ILIDAFCKE-----------------------------------GRMDDATMMFSKML 89
             I+ DAFCK                                     R++DA+  F+ ++
Sbjct: 540 VSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLI 599

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------------ 137
           E   + ++VTY+ +I GY   + +  A  ++E +      PN                  
Sbjct: 600 EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMD 659

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            A++++  M   G  P+ +    L D+  +S
Sbjct: 660 GAIRMFSIMAEKGSKPNAVTYGCLMDWFSKS 690


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ LF +L    + PD+ TY+ +I G CS++R +EA  +FEK+T   +  NS+T+  LID
Sbjct: 341 AMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLID 400

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKEG+MD A  + S+M E G + NV+T+S LIDGY K +N+++A  +Y EM   ++SP
Sbjct: 401 GCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSP 460

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G   EA++LY  ML NGI P+   +S L D
Sbjct: 461 DVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLD 505



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 98/179 (54%), Gaps = 25/179 (13%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D AL++  Q+T+ G+EP++IT++T+I GYC +  L  A+ ++ ++    L P+ +
Sbjct: 404 KEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVV 463

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID  CK G M +A  ++S ML+ G   N  T SCL+DG  K   +  A +++ E 
Sbjct: 464 TYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEK 523

Query: 124 CE--------------NNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLL 157
            E               +++ ++A           G+ ++A++L+  M R G+ PD ++
Sbjct: 524 IEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVI 582



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA  LF  +    + P+I  YN++I  YC +  + EA+ LF +L   ++ P+
Sbjct: 297 LCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPD 356

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ILI   C   R ++A  +F KM ++G  AN VTY+ LIDG  K   M  A ++  
Sbjct: 357 VFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICS 416

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M EN + PN+    T             AM +Y  M+   + PD +  + + D
Sbjct: 417 QMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMID 470



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 90/152 (59%), Gaps = 4/152 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  +F ++T  G+  + +TYN++I G C   ++D+A+++  ++T   ++PN ITF+ L
Sbjct: 374 EEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTL 433

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +CK   +  A  ++S+M+ K    +VVTY+ +IDG+ K  +MK A  +Y +M +N I
Sbjct: 434 IDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGI 493

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLST 160
           +PN          L D + ++G + D L L T
Sbjct: 494 TPNCYTISC----LLDGLCKDGKISDALELFT 521



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+K    +   +++ ++   GL P +IT+ T+I G C    L  A ++F+++    + P
Sbjct: 156 VLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVP 215

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             I +TILI   C + ++++A  M   M E G   NV TY+ L+DGY K  N K A  +Y
Sbjct: 216 TVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLY 275

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++M    + P++             G    A  L+ +M++  + P+  + ++L D
Sbjct: 276 QDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLID 330



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +   + + G+ P++ TYNT++ GYC L    +A++L++ +    L P+ +TF I
Sbjct: 233 IEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGI 292

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G M  A  +F  M++     N+  Y+ LID Y K  ++  A  ++ E+    
Sbjct: 293 LIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFE 352

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +SP++              R  EA  +++ M + GI+ + +  ++L D
Sbjct: 353 VSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLID 400



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 15/139 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--------- 58
           +  ALKL+  + D G+ P+  T + ++ G C   ++ +A++LF +    Q          
Sbjct: 478 MKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGG 537

Query: 59  -KP---NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            KP   N + +T LI   C++G+   A  +FS M   G + + V Y  ++ G F+ + + 
Sbjct: 538 SKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI- 596

Query: 115 SAFDVYEEMCENNISPNIA 133
               ++ +M +  + PN A
Sbjct: 597 -LMMLHADMLKFGVIPNSA 614


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 13/181 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  LF ++  +G+ PD++TY+ +I G+C L +L++A+ LF K+    +KP+  TF I
Sbjct: 241 VNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNI 300

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++AFCK+G+M +   +F  M+++G K N VTY+ L+DGY   + +  A  ++  M +  
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           ++P+I              +  EAM L+  M R  I+PD +  S+L D  L  SG   + 
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLID-GLSKSGRISYA 419

Query: 176 I 176
           +
Sbjct: 420 L 420



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 23/154 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL+L  Q+ DRG+ P I TYN+I+   C ++++D+A+ L  KL    ++PN
Sbjct: 410 LSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPN 469

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ILI   C+ G+++DA  +F  +L KG   NV TY+ +I G+              
Sbjct: 470 MYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGF-------------- 515

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDG 155
             C       + G   EA+ L   M  NG +PD 
Sbjct: 516 --C-------VEGLFNEALALLSKMEDNGCIPDA 540



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A     ++   G   D I+Y T+I G C +     A+ L +++    ++PN + + 
Sbjct: 170 QIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYN 229

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID+ CK   +++A  +FS+M+ KG   +VVTYS LI G+     +  A D++ +M   
Sbjct: 230 TIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILE 289

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI P++             G+  E   ++D M++ GI P+ +  ++L D
Sbjct: 290 NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMD 338



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 74/129 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +     +F  +  +G++P+ +TYN+++ GYC +  +++A  +F  +    + P+  
Sbjct: 307 KDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQ 366

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++I+I+ FCK  + D+A  +F +M  K    +VVTYS LIDG  KS  +  A  + ++M
Sbjct: 367 SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426

Query: 124 CENNISPNI 132
            +  + P I
Sbjct: 427 HDRGVPPTI 435



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H    L L  ++  RG++P+++  N +I  +C L  +  A  +F K+  +   P+
Sbjct: 95  LVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPD 154

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITFT LI   C +G++  A +   K++  G   + ++Y  LI G  K    ++A D+ +
Sbjct: 155 TITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQ 214

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            +  N + PN+    T            EA  L+  M+  GI PD +  S L
Sbjct: 215 RVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSAL 266



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 85/161 (52%), Gaps = 14/161 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +F  +   G+ PDI +Y+ +I G+C + + DEA+ LF+++    + P+
Sbjct: 342 LVKE--VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID   K GR+  A  +  +M ++G    + TY+ ++D   K   +  A  +  
Sbjct: 400 VVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLT 459

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           ++ +  I PN+            +G+  +A ++++ +L  G
Sbjct: 460 KLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKG 500



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  +L D+G++P++ TY+ +I G C   +L++A ++FE L       N
Sbjct: 445 LCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLN 504

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I  FC EG  ++A  + SKM + G   +  TY  +I   FK      A  +  
Sbjct: 505 VDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLR 564

Query: 122 EMCENNISPNIAGRPTEAMQLYD 144
           EM    + P       +  + YD
Sbjct: 565 EMIARGVRPRQIAIWFQKKKEYD 587


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 103/181 (56%), Gaps = 13/181 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  LF ++  +G+ PD++TY+ +I G+C L +L +A+ LF K+    +KP+  TF I
Sbjct: 241 VNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNI 300

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++AFCK+G+M +   +F  M+++G K N VTY+ L+DGY   + +  A  ++  M +  
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           ++P+I              +  EAM L+  M R  I+PD +  S+L D  L  SG   + 
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLID-GLSKSGRISYA 419

Query: 176 I 176
           +
Sbjct: 420 L 420



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A     ++   G   D I+Y T+I G C +     A+ L +++    ++PN + + 
Sbjct: 170 QIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYN 229

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID+ CK   +++A  +FS+M+ KG   +VVTYS LI G+     +K A D++ +M   
Sbjct: 230 TIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILE 289

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI P++             G+  E   ++D M++ GI P+ +  ++L D
Sbjct: 290 NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMD 338



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 75/129 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +     +F  +  +G++P+ +TYN+++ GYC +  +++A  +F  +    + P+  
Sbjct: 307 KDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQ 366

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++I+I+ FCK  + D+A  +F +M  K    +VVTYS LIDG  KS  +  A  + ++M
Sbjct: 367 SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426

Query: 124 CENNISPNI 132
            +  + PNI
Sbjct: 427 HDRGVPPNI 435



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 23/154 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL+L  Q+ DRG+ P+I TYN+I+   C  +++D+A+ L  K      +P+
Sbjct: 410 LSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPD 469

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ILI   C+ G+++DA  +F  +L KG   +V  Y+ +I G+              
Sbjct: 470 ISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGF-------------- 515

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDG 155
             C       + G   EA+ L   M  NG +PD 
Sbjct: 516 --C-------VEGLFNEALALLSKMEDNGCIPDA 540



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 85/161 (52%), Gaps = 14/161 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +F  +   G+ PDI +Y+ +I G+C + + DEA+ LF+++    + P+
Sbjct: 342 LVKE--VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID   K GR+  A  +  +M ++G   N+ TY+ ++D   K+  +  A  +  
Sbjct: 400 VVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLT 459

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           +  +    P+I            +G+  +A ++++ +L  G
Sbjct: 460 KFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKG 500



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H    L L  ++  RG++P+++  N +I  +C L  +  A  +F K+  +   P+
Sbjct: 95  LVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPD 154

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITFT L    C +G++  A +   K++  G   + ++Y  LI G  K    ++A D+ +
Sbjct: 155 TITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQ 214

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            +  N + PN+    T            EA  L+  M+  GI PD +  S L
Sbjct: 215 RVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSAL 266



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  +  D+G +PDI TY+ +I G C   +L++A ++FE L       +
Sbjct: 445 LCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLD 504

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +TI+I  FC EG  ++A  + SKM + G   +  TY  +I   FK      A  +  
Sbjct: 505 VYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLR 564

Query: 122 EMCENNISPNI 132
           EM    +  N 
Sbjct: 565 EMIARGLPLNF 575



 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 12/148 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           + I+Y++    + S N +D+AV LF +L      P +  F  ++ +  K         + 
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IA 133
            KM  +G K N+V  + LI+ + +   +  AF V+ ++ +    P+            + 
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLK 168

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           G+  +A   +D ++  G   D +   TL
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTL 196


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 98/176 (55%), Gaps = 13/176 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF    + G+ PD+ +YN +I GYC  NR+DEA+ LF K+   +L PN +T++ LID
Sbjct: 342 ARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLID 401

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+  A  +FS + + GP  NV+TY+ ++D   K Q +  A +++  M E  ++P
Sbjct: 402 GLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTP 461

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           N++             R  EAM L++ M R  ++PD +  + L D  L  SG   H
Sbjct: 462 NVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLID-GLCKSGRISH 516



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL LF ++  + L P+I+TY+++I G C   R+  A +LF  +      PN I
Sbjct: 370 KNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVI 429

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I++DA CK   +D A  +F+ M E+G   NV +Y+ LI+GY KS+ +  A +++EEM
Sbjct: 430 TYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEM 489

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              N+ P+             +GR + A +L++ M   G   D +  + L D
Sbjct: 490 HRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFD 541



 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 70/106 (66%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++LF  + +RGL P++ +YN +I GYC   R+DEA+ LFE++    L P+S+T+  
Sbjct: 444 VDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNC 503

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
           LID  CK GR+  A  +F+ M + GP  +V+TY+ L D + K Q++
Sbjct: 504 LIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  +   + +RG  PD++T+NT++ GYC  N + EA +LF+      + P+
Sbjct: 298 LCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPD 357

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI  +CK  R+D+A  +F+KM  K    N+VTYS LIDG  KS  +  A++++ 
Sbjct: 358 VWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFS 417

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            + +   SPN+                 +A++L++ M   G+ P+      ++ YN+  +
Sbjct: 418 AIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPN------VSSYNILIN 471

Query: 170 G 170
           G
Sbjct: 472 G 472



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 71/122 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A +LF  + D G  P++ITYN ++   C +  +D+A++LF  +    L PN
Sbjct: 403 LCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPN 462

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+ +CK  R+D+A  +F +M  +    + VTY+CLIDG  KS  +  A++++ 
Sbjct: 463 VSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFN 522

Query: 122 EM 123
            M
Sbjct: 523 VM 524



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  L+  +  RG++PD+ TY  +I G+C L +  E  +L   +    +  N
Sbjct: 228 LCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLN 287

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ILIDA CK+G +  A  M + M+E+G + ++VT++ L+ GY    ++  A  +++
Sbjct: 288 VYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFD 347

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              E  I+P++              R  EA+ L++ M    + P+ +  S+L D
Sbjct: 348 TFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLID 401



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+    +  +G   D +TY T+I G C +    EA +L  K+    ++PN + + +++D
Sbjct: 167 ALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVD 226

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G + +A  ++S ++ +G   +V TY+CLI G+      +    +  +M + N++ 
Sbjct: 227 GLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNL 286

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G   +A  + + M+  G  PD +  +TL
Sbjct: 287 NVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTL 329



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K  H   A+ L  Q+  RG+ P I+T + +I  YC L  +  A  +   +     + N
Sbjct: 88  IVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLN 147

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT T ++   C  G +  A      ++ +G   + VTY  LI+G  K    + AF++  
Sbjct: 148 AITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLH 207

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M    + PN+             G  TEA  LY  ++  GI PD
Sbjct: 208 KMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPD 252



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 62/126 (49%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  A  + G +  RG + + IT  TI+ G C    + +A++  + +       + +T+ 
Sbjct: 128 HMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYG 187

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK G   +A  +  KM  +  + NVV Y+ ++DG  K   +  A D+Y ++   
Sbjct: 188 TLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGR 247

Query: 127 NISPNI 132
            I P++
Sbjct: 248 GIDPDV 253


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++   ++ DRG+ PD++TYNTI+ G+CSL +L+EA +LF+++    + P+
Sbjct: 246 LCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPD 305

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
           ++TF IL+D  CKEG                                   +MD+A  +  
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLG 365

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ KG   N+ +Y+ LI+GY KS+ M  A  +  EM E N++P+              G
Sbjct: 366 IMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVG 425

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           RP EA+ L+  M  +G++PD +  S L D
Sbjct: 426 RPREALNLFKEMCSSGLLPDLMAYSILLD 454



 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  H+D A+ + G++   G++PD IT+NT+I G C+  ++ EAV LF ++     +PN
Sbjct: 141 LCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPN 200

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++  +I+  CK G    A  +F KM +   K NVVTY+ +ID   K + +  A +   
Sbjct: 201 VISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLS 260

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  I P++             G+  EA +L+  M+   +MPD +  + L D
Sbjct: 261 EMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVD 314



 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 21/178 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A+K+ G +  +G  P++ +YN +I GYC   R++EA +L  +++   L P+++T++
Sbjct: 356 QMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYS 415

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+   C+ GR  +A  +F +M   G   +++ YS L+DG+ K  ++  A  + +EM E 
Sbjct: 416 TLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHER 475

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD---------GLLLSTLAD 163
            I PN            IAG+   A +L+  +  +GI PD         GLL   L+D
Sbjct: 476 RIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSD 533



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 91/163 (55%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L  +++++ L PD +TY+T++ G C + R  EA+ LF+++    L P+ +
Sbjct: 388 KSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLM 447

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++IL+D FCK G +D+A  +  +M E+  K N++ Y+ LI G F +  ++ A +++ ++
Sbjct: 448 AYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKL 507

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             + I P+I             G   EA + +  M  +G +PD
Sbjct: 508 SADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPD 550



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +T++G EP+  TYN ++ GYC  N++DEA+++   +      PN
Sbjct: 316 LCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPN 375

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+ +CK  RM++A  + S+M EK    + VTYS L+ G  +    + A ++++
Sbjct: 376 LSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFK 435

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EMC + + P++             G   EA++L   M    I P+ +L + L
Sbjct: 436 EMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTIL 487



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+    +A+ L  Q+   G+  ++ + N +I   C L+ +D AV +  K+  + ++P+
Sbjct: 106 IAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPD 165

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITF  LI+  C EG++ +A  +F++M+  G + NV++Y+ +I+G  K+ N   A  V+ 
Sbjct: 166 AITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFR 225

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +N   PN+    T            EA++    M+  GI PD +  +T+
Sbjct: 226 KMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTI 277



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 72/128 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  HLD ALKL  ++ +R ++P+II Y  +I G     +L+ A +LF KL+   ++P+  
Sbjct: 458 KHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIW 517

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ++I    KEG  D+A   F KM + G   +  +Y+ +I G+ ++Q+  +A  + +EM
Sbjct: 518 TYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM 577

Query: 124 CENNISPN 131
                S +
Sbjct: 578 VGKRFSAD 585



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF +L+  G+ PDI TYN +I G       DEA + F K+      P+S ++ +
Sbjct: 497 LEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNV 556

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +I  F +      A  +  +M+ K   A+  T+  L+D
Sbjct: 557 IIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL  F ++      P ++ +   +       +   AV L  ++    +  N  +  +
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C+   +D A  +  KM + G + + +T++ LI+G      +K A  ++ EM  + 
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSG 196

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN+             G    A++++  M +N   P+ +  +T+ D
Sbjct: 197 HEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIID 244



 Score = 43.9 bits (102), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE   D A + F ++ D G  PD  +YN II G+        A+QL +++   +   +
Sbjct: 526 LLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSAD 585

Query: 62  SITFTILID 70
           S TF +L+D
Sbjct: 586 SSTFQMLLD 594


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ +A +LF ++  R + PD ITY  +ICG C   R+ EA +LF ++ C +L+P+ +T+T
Sbjct: 373 NVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYT 432

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CKEG+M +A  + ++ML+ G   N+VTY+ L DG  K   + +A ++  EMC  
Sbjct: 433 ALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRK 492

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  NI            AG   +A++L   M   G  PD +  +TL D
Sbjct: 493 GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 541



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  Q+  RG  PD+I+Y+T+I GYC +  L   ++L E++    LKPN  T+  +I 
Sbjct: 272 AHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVIL 331

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G++ +A  +  +M+ +G   + V Y+ LIDG+ K  N+ SA+ +++EM +  ISP
Sbjct: 332 LLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISP 391

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +              GR  EA +L+  M+   + PD +  + L D
Sbjct: 392 DFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALID 436



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +  A ++  ++   G+ PD + Y T+I G+C L  +  A +LF+++   ++ P
Sbjct: 332 LLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISP 391

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + IT+T +I   C+ GR+ +A  +F +M+ K  + + VTY+ LIDGY K   MK AF ++
Sbjct: 392 DFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLH 451

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
            +M +  ++PNI             G    A +L   M R G+
Sbjct: 452 NQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGL 494



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 69/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++D A+KL   +   G  PD +TY T++  YC    +  A +L  ++   +L+P 
Sbjct: 508 LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPT 567

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +L++ FC  G ++D   +   MLEKG   N  TY+ LI  Y    NM++  ++Y 
Sbjct: 568 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 627

Query: 122 EMCENNISPN 131
            MC   + P+
Sbjct: 628 GMCAKGVVPD 637



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++  +GLE +I TYN+++ G C    +D+AV+L + +      P+++T+T 
Sbjct: 479 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 538

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA+CK   M  A  +  +ML++  +  VVT++ L++G+  S  ++    + + M E  
Sbjct: 539 LMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKG 598

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
           I PN            I        ++Y  M   G++PDG
Sbjct: 599 IMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDG 638



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  L  Q+   GL P+I+TY  +  G C    +D A +L  ++    L+ N  
Sbjct: 440 KEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIY 499

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L++  CK G +D A  +   M   G   + VTY+ L+D Y KS+ M  A ++  +M
Sbjct: 500 TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM 559

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  + P +            +G   +  +L   ML  GIMP+    ++L
Sbjct: 560 LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 609



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L   LKL  ++  +GL+P+  TYN +I   C   ++ EA ++  ++    + P+ + +T 
Sbjct: 304 LQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTT 363

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID FCK G +  A  +F +M ++    + +TY+ +I G  ++  +  A  ++ EM    
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+              G+  EA  L++ ML+ G+ P+ +  + LAD
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALAD 471



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  Q+ DR L+P ++T+N ++ G+C    L++  +L + +    + PN+ T+  LI 
Sbjct: 552 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 611

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C    M   T ++  M  KG   +  TY+ LI G+ K++NMK A+ ++ +M     + 
Sbjct: 612 QYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNL 671

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            ++             +  EA +L++ M R G++ D  + +  AD N
Sbjct: 672 TVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADIN 718



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS-LNRLDEAVQLFEKLTCVQLK 59
           +L++   LD A KLF ++ + GL   + + N  I      L+ +  A+++F +   V + 
Sbjct: 191 VLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVC 250

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            N+ ++ I+  + C+ GR+ +A  +  +M  +G   +V++YS +I+GY +   ++    +
Sbjct: 251 WNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKL 310

Query: 120 YEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EEM    + PN              G+  EA ++   M+  GI PDG++ +TL D
Sbjct: 311 IEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 366



 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 58/131 (44%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ A  +++  +  +G+ PD  TYN +I G+C    + EA  L   +          ++ 
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 677

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F K  +  +A  +F +M  +G  A+   Y+   D  +    M+   ++ +E  E 
Sbjct: 678 ALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEK 737

Query: 127 NISPNIAGRPT 137
            +  +I  + T
Sbjct: 738 CLVGDIQTKNT 748



 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS-QNMKSAFDVYEE 122
            F I      + G +D+A  +F KML  G   +V + +  I    +    +K A  V+ E
Sbjct: 184 VFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVE 243

Query: 123 -----MCENNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                +C N  S NI        GR  EA QL   M   G +PD +  ST+ +
Sbjct: 244 FPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVIN 296


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ +A +LF ++  R + PD ITY  +ICG C   R+ EA +LF ++ C +L+P+ +T+T
Sbjct: 273 NVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYT 332

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CKEG+M +A  + ++ML+ G   N+VTY+ L DG  K   + +A ++  EMC  
Sbjct: 333 ALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRK 392

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  NI            AG   +A++L   M   G  PD +  +TL D
Sbjct: 393 GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 441



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +  A ++  ++   G+ PD + Y T+I G+C L  +  A +LF+++   ++ P
Sbjct: 232 LLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISP 291

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + IT+T +I   C+ GR+ +A  +F +M+ K  + + VTY+ LIDGY K   MK AF ++
Sbjct: 292 DFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLH 351

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
            +M +  ++PNI             G    A +L   M R G+
Sbjct: 352 NQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGL 394



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 69/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++D A+KL   +   G  PD +TY T++  YC    +  A +L  ++   +L+P 
Sbjct: 408 LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPT 467

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +L++ FC  G ++D   +   MLEKG   N  TY+ LI  Y    NM++  ++Y 
Sbjct: 468 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 527

Query: 122 EMCENNISPN 131
            MC   + P+
Sbjct: 528 GMCAKGVVPD 537



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++  +GLE +I TYN+++ G C    +D+AV+L + +      P+++T+T 
Sbjct: 379 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 438

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA+CK   M  A  +  +ML++  +  VVT++ L++G+  S  ++    + + M E  
Sbjct: 439 LMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKG 498

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
           I PN            I        ++Y  M   G++PDG
Sbjct: 499 IMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDG 538



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  L  Q+   GL P+I+TY  +  G C    +D A +L  ++    L+ N  
Sbjct: 340 KEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIY 399

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L++  CK G +D A  +   M   G   + VTY+ L+D Y KS+ M  A ++  +M
Sbjct: 400 TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM 459

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  + P +            +G   +  +L   ML  GIMP+    ++L
Sbjct: 460 LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 509



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  Q+ DR L+P ++T+N ++ G+C    L++  +L + +    + PN+ T+  LI 
Sbjct: 452 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 511

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C    M   T ++  M  KG   +  TY+ LI G+ K++NMK A+ ++ +M     + 
Sbjct: 512 QYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNL 571

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            ++             +  EA +L++ M R G++ D  + +  AD N
Sbjct: 572 TVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADIN 618



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +  LKL  ++  +GL+P+  TYN +I   C   ++ EA ++  ++    + P+ + +T L
Sbjct: 205 EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 264

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID FCK G +  A  +F +M ++    + +TY+ +I G  ++  +  A  ++ EM    +
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 324

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            P+              G+  EA  L++ ML+ G+ P+ +  + LAD
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALAD 371



 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 58/131 (44%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ A  +++  +  +G+ PD  TYN +I G+C    + EA  L   +          ++ 
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 577

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F K  +  +A  +F +M  +G  A+   Y+   D  +    M+   ++ +E  E 
Sbjct: 578 ALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEK 637

Query: 127 NISPNIAGRPT 137
            +  +I  + T
Sbjct: 638 CLVGDIQTKNT 648


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A+ L  ++ DRG+ PD++TY+TI+ G+CSL  L+EA  LF ++    + PN
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TFTIL+D  CKEG + +A  +F  M +KG + N  TY+ L+DGY  +  M  A  V +
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLD 361

Query: 122 -----------------------------------EMCENNISPNI------------AG 134
                                              EM E  ++P+              G
Sbjct: 362 IMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG 421

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           RP EA+ L+  M  +G++PD +  STL D
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLLD 450



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  A+ + G++   G++PD IT+NT+I G C    + EAV LF ++     +P+ I+++
Sbjct: 142 HVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYS 201

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +  KM EKG K N+V Y+ +ID   K   +  A D+  EM + 
Sbjct: 202 TVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDR 261

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P++             G   EA  L++ M+   +MP+ +  + L D
Sbjct: 262 GIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVD 310



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  A+ LF ++  RG +PD+I+Y+T+I G C       A+QL  K+     KPN + 
Sbjct: 175 EGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVA 234

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T +ID+ CK+  ++DA  + S+M+++G   +VVTYS ++ G+    ++  A  ++ EM 
Sbjct: 235 YTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMV 294

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N+ PN              G  +EA  ++++M + G  P+    + L D
Sbjct: 295 GRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMD 345



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A K+   + D+G  P + +YN +I GYC   RLDEA  L  +++  +L P+++T++
Sbjct: 352 QMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYS 411

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+   C+ GR  +A  +F +M   G   +++TYS L+DG  K  ++  A  + + M E+
Sbjct: 412 TLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQES 471

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
            I P+            IAG+   A +L+  +  +GI P
Sbjct: 472 KIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQP 510



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A  L  +++++ L PD +TY+T++ G C + R  EA+ LF+++    L P+ +
Sbjct: 384 KRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLM 443

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ L+D  CK G +D+A  +   M E   + ++V Y+ LI+G F +  ++ A +++ ++
Sbjct: 444 TYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKL 503

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             + I P I             G   EA +L+  M  +G +P+
Sbjct: 504 FADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPN 546



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F  +T +G EP+  TYN ++ GYC  N++DEA ++ + +      P 
Sbjct: 312 LCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPV 371

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+ +CK  R+D+A  +  +M EK    + VTYS L+ G  +    + A ++++
Sbjct: 372 VHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFK 431

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EMC + + P++             G   EA++L  SM  + I PD +L + L +
Sbjct: 432 EMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIE 485



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD ALKL   + +  +EPDI+ YN +I G     +L+ A +LF KL    ++P 
Sbjct: 452 LCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPT 511

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I    KEG  D+A  +F KM + G   N  +Y+ +I G+ ++Q+  +A  + +
Sbjct: 512 IRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLID 571

Query: 122 EMCENNISPN 131
           EM     S +
Sbjct: 572 EMVGKRFSAD 581



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+      + L  Q+   G+  ++ + N +I   C LN +  A+ +  K+  + ++P+
Sbjct: 102 IAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPD 161

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITF  LI+  C EG + +A  +F++M+ +G + +V++YS +I+G  KS N   A  +  
Sbjct: 162 AITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLR 221

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E    PN+    T            +AM L   M+  GI PD +  ST+
Sbjct: 222 KMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTI 273



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 85/164 (51%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +   AL+L  ++ ++G +P+++ Y TII   C    +++A+ L  ++    + P+
Sbjct: 207 LCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPD 266

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ ++  FC  G +++AT++F++M+ +    N VT++ L+DG  K   +  A  V+E
Sbjct: 267 VVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFE 326

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
            M +    PN            +  +  EA ++ D M+  G  P
Sbjct: 327 AMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAP 370



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF +L   G++P I TY  +I G       DEA +LF K+      PNS ++ +
Sbjct: 493 LEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNV 552

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +I  F +      A  +  +M+ K   A+  T+  L+D
Sbjct: 553 IIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL  F ++      P ++ +   +       +    V L  ++    +  N  +  I
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C+   +  A  +  KM + G + + +T++ LI+G      +K A  ++ EM    
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++            +G  + A+QL   M   G  P+ +  +T+ D
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIID 240



 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE   D A +LF ++ D G  P+  +YN II G+        A++L +++   +   +
Sbjct: 522 LLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSAD 581

Query: 62  SITFTILID 70
           S TF +L+D
Sbjct: 582 SSTFQMLLD 590


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +F Q+ DRG++PD +TYNTII G C    +D+A  +F+++    +KP+
Sbjct: 305 LCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPD 364

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+TI+ID  CK   +D A  +F +M++KG K N  TY+CLI GY  +   +      +
Sbjct: 365 NLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIK 424

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           EM  +++ P++             G+  EA  L+DSM+R GI P
Sbjct: 425 EMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKP 468



 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 89/149 (59%), Gaps = 12/149 (8%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF ++ ++G+ PDI+ +NT++C  C   R+ EA +L + + C+ LKP+ I++  LID  
Sbjct: 596 ELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGH 655

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C   RMD+A  +   M+  G K N+V+Y+ L+ GY K+  + +A+ ++ EM    ++P +
Sbjct: 656 CFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGV 715

Query: 133 ------------AGRPTEAMQLYDSMLRN 149
                       +GR +EA +LY +M+++
Sbjct: 716 ETYNTILNGLFRSGRFSEARELYVNMIKS 744



 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 48/220 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A +L   +   GL+PD+I+YNT+I G+C  +R+DEAV+L + +    LKPN
Sbjct: 620 LCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPN 679

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L+  +CK GR+D+A  +F +ML KG    V TY+ +++G F+S     A ++Y 
Sbjct: 680 IVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYV 739

Query: 122 EM-------------------CENN---------------------ISPNI-------AG 134
            M                   C+NN                     I+ NI        G
Sbjct: 740 NMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGG 799

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           R  +AM L+ ++  NG++P  +    +A+ NL   GS E 
Sbjct: 800 RKEDAMDLFAAIPANGLVPSVVTYRLIAE-NLIEEGSLEE 838



 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 15/171 (8%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +D A  LF ++   G+ PD++TYNTII G C    +D A  +F+++    +KPN++T
Sbjct: 206 EGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVT 262

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +ID  CK   +D A  +F KM++KG K + VTY+ +IDG  K+Q +  A  V+++M 
Sbjct: 263 YNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMI 322

Query: 125 ENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  + P+     T            +A  ++  M+  G+ PD L  + + D
Sbjct: 323 DRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIID 373



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +F ++ D+G++P  +TYNTII G C    +D A  +F+++    +KP+
Sbjct: 270 LCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPD 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID  CK   +D A  +F +M++KG K + +TY+ +IDG  K+Q++  A  V++
Sbjct: 330 HVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQ 389

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M +  + PN              G+  E +Q    M  + + PD      L DY
Sbjct: 390 QMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDY 444



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 81/130 (62%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +F Q+ ++G++P+ +TYNTII G C    +D A  +F+K+    +KP+
Sbjct: 235 LCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPS 294

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  +ID  CK   +D A  +F +M+++G K + VTY+ +IDG  K+Q +  A  V++
Sbjct: 295 NVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQ 354

Query: 122 EMCENNISPN 131
           +M +  + P+
Sbjct: 355 QMIDKGVKPD 364



 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +F Q+ D+G++P+  TYN +I GY S  + +E VQ  ++++   L+P+
Sbjct: 375 LCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPD 434

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +L+D  CK G+ ++A  +F  M+ KG K +V  Y  ++ GY K   +    D+  
Sbjct: 435 VFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLN 494

Query: 122 EMCENNISPN----------IAGRPT--EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M  N ISPN           A R    E M ++  M + G+ P+ +   TL D
Sbjct: 495 LMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLID 548



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   +   G+ P+   +NT+IC Y     +DE + +F K+    L PN +T+  LIDA C
Sbjct: 492 LLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALC 551

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K GR+DDA + F++M+ +G   N V ++ L+ G       +   +++ EM    I P+I 
Sbjct: 552 KLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIV 611

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       GR  EA +L DSM+  G+ PD +  +TL D
Sbjct: 612 FFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLID 653



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 87/164 (53%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+  F Q+ + G+ P+ + +N+++ G C++++ ++  +LF ++    ++P+
Sbjct: 550 LCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPD 609

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  ++   CKEGR+ +A  +   M+  G K +V++Y+ LIDG+  +  M  A  + +
Sbjct: 610 IVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLD 669

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            M    + PNI            AGR   A  L+  MLR G+ P
Sbjct: 670 GMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTP 713



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 15/156 (9%)

Query: 20  DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79
           D    PD+++YN +I G+ +  ++D+A  LF ++    + P+ +T+  +ID  CK   +D
Sbjct: 186 DSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMG---VSPDVVTYNTIIDGLCKAQEVD 242

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT-- 137
            A  +F +M+EKG K N VTY+ +IDG  K+Q +  A  V+++M +  + P+     T  
Sbjct: 243 RAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTII 302

Query: 138 ----------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      A  ++  M+  G+ PD +  +T+ D
Sbjct: 303 DGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIID 338



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 18/165 (10%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITFTILID 70
           L  Q+ + G    +++YNT++ G C   R +EA +L   +   Q     P+ +++ I+I+
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVIN 201

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F  EG++D A  +F   LE G   +VVTY+ +IDG  K+Q +  A DV+++M E  + P
Sbjct: 202 GFFNEGQVDKAYSLF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKP 258

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N             A     A  ++  M+  G+ P  +  +T+ D
Sbjct: 259 NNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIID 303



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 47/202 (23%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-----N 61
            +D A+KL   +   GL+P+I++YNT++ GYC   R+D A  LF ++    + P     N
Sbjct: 660 RMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYN 719

Query: 62  SI------------------------------TFTILIDAFCKEGRMDDATMMFSKMLEK 91
           +I                              T++I++D FCK    D+A  +F  +   
Sbjct: 720 TILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSM 779

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA 139
             + +++T++ +IDG FK    + A D++  +  N + P++             G   E 
Sbjct: 780 DLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEEL 839

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
             L+  M ++G  P+  +L+ L
Sbjct: 840 DCLFSVMEKSGTAPNSHMLNAL 861



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  LF  +  +G++P +  Y  ++ GY     L E   L   +    + PN
Sbjct: 445 LCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPN 504

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F  +I A+ K   +D+   +F KM ++G   NVVTY  LID   K   +  A   + 
Sbjct: 505 HRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFN 564

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    ++PN               +  +  +L+  ML  GI PD +  +T+
Sbjct: 565 QMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTV 616



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A K+F  L    L+ DIIT+N +I G     R ++A+ LF  +    L P+ +T+ +
Sbjct: 766 FDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRL 825

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +   +EG +++   +FS M + G   N    + LI        +  A     ++ E N
Sbjct: 826 IAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKN 885

Query: 128 IS 129
            S
Sbjct: 886 FS 887



 Score = 43.9 bits (102), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 13/154 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + PD  TY+ +I  +C + RL+     F  +     + + I    L+   C   R+ +A 
Sbjct: 80  VAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAM 139

Query: 83  -MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC---ENNISPNIAG---- 134
            ++  +M E G +  VV+Y+ L+ G    +  + A ++   M    +++ SP++      
Sbjct: 140 HVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIV 199

Query: 135 -----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   +  + Y   L  G+ PD +  +T+ D
Sbjct: 200 INGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIID 233



 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 47/121 (38%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A+ LF  +   GL P ++TY  I         L+E   LF  +      PN
Sbjct: 795 LFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPN 854

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S     LI      G +  A    SK+ EK       T S LI  + + +  + A  + E
Sbjct: 855 SHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKSLPE 914

Query: 122 E 122
           +
Sbjct: 915 K 915


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + ++G EPD++TY+TII G C   ++ EA+++ E++T   + P+  T+TI++D  C+ G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-NIA--- 133
           +D+A  +F KM+E+G  AN V Y+ LI+G  K +N++ A+ + EEM      P NI    
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   G+ +EA Q +DSM   G  PD +  + L D
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLD 158



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 14/176 (7%)

Query: 2   LIKECHLDAALKLFG--QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           L KE  +  A  LF    + DR + PD+ITYNT+I G+C + + DEA++LF+ +      
Sbjct: 160 LYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYM 219

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+++T+  ++    ++  MD+A  MF KM++ G   N  TYS ++ G+ +  NM    ++
Sbjct: 220 PDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLEL 279

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           YEEM E   SP++            A +  +A ++ + M + G +PD +  + L D
Sbjct: 280 YEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLD 335



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 98/177 (55%), Gaps = 16/177 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K   +D A K+  +++  G  PD++TYN ++ G C  N +D+A +LF  +      P
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAP 360

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + ++++++++  CK  ++ DA ++F +M+E+    +VVT++ L+DG  K+  +  A D+ 
Sbjct: 361 DIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL 420

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNG----IMPDGLLLSTL 161
           + M E+N+ P+               R  EA++L+  M+  G    ++P  ++L+ L
Sbjct: 421 DVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGL 477



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++ ++D A ++F ++ D G  P+  TY+ ++ G+C +  +   ++L+E++T  +  P+
Sbjct: 232 LARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPD 291

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    +ID  CK  ++DDA  +  +M + G   +VVTY+ L+DG  K+  +  A +++ 
Sbjct: 292 VLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 351

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +N  +P+I              +  +A  L+D M+   ++PD +  + L D
Sbjct: 352 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMD 405



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  LF ++ +R L PD++T+N ++ G C   +LDEA  L + ++   + P+
Sbjct: 372 LCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPD 431

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T T L+   C++ R D+A  +F  M+EKG  A+V+ ++ ++ G  +   +  A   ++
Sbjct: 432 GVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFK 491

Query: 122 EMCENN--ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +++   SP++            AGR  +A+  +  M  +G  PD +  +TL
Sbjct: 492 SMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTL 545



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 14/176 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL++  ++T++G+ PD+ TY  I+   C   ++DEA +LF K+       N
Sbjct: 20  LCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSAN 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  LI+  CK+  ++ A  +  +M  KG + + +TY+ ++ G  +   +  A   ++
Sbjct: 80  TVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFD 139

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDS--MLRNGIMPDGLLLSTLAD 163
            M     SP++             G+  EA  L+ +  M    + PD +  +TL D
Sbjct: 140 SMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLID 195



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLK 59
           L ++   D A++LF  + ++G   D++ +N ++ G C   +L +A+  F+ +     +  
Sbjct: 442 LCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFS 501

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+ +T+T L++A  + GR+D A   F +M   G   + V Y+ L++G  K      A  +
Sbjct: 502 PDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRL 561

Query: 120 YEEMCENNISPNIAGRPTEA 139
            + M E     +    P  A
Sbjct: 562 TQAMKEKGFLSDCFKAPLRA 581


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 80/130 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITYN++I G C  +RLDEA Q+F+ +      PN
Sbjct: 487 LINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPN 546

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI+ +CK GR+DD   +F +M  +G  AN +TY  LI G+ K  N+  A D+++
Sbjct: 547 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQ 606

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 607 EMMASGVYPD 616



 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 23/166 (13%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  G  P ++T++T++ G C  +R+ EA+ LF ++     KPN +TFT 
Sbjct: 129 LPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMC----KPNVVTFTT 184

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +MLE G + N +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 185 LMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 244

Query: 127 NISPNI-----------------AGRPTEAMQLYDSML-RNGIMPD 154
           +I PN+                 +GR +EA QL   ML R  I PD
Sbjct: 245 HIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPD 290



 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 23/174 (13%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  PDIIT+NT+I GYC   R+D+ ++L  ++T   L  N+I
Sbjct: 338 KQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTI 397

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI  FC+ G ++ A  +  +M+  G   NVVT + L+DG   +  +K A ++++ M
Sbjct: 398 TYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAM 457

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +           N + P++             G+  EA +LY+ M   GI+PD
Sbjct: 458 QKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 511



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 29/192 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P  ITY+++I G+C  NRLD A  +F  +      P+
Sbjct: 301 FVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPD 360

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  LI  +C+  R+DD   +  +M E G  AN +TY+ LI G+ +  ++ +A D+ +
Sbjct: 361 IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQ 420

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLR-----------NGIMPDGLLL 158
           EM  + + PN+             G+  +A++++ +M +           NG+ PD    
Sbjct: 421 EMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPD---- 476

Query: 159 STLADYNLQSSG 170
             +  YN+  SG
Sbjct: 477 --VQTYNILISG 486



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  + + PD++TYN +I  +    +  EA +L++++    + P++IT++ +ID FCK+ R
Sbjct: 282 LERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNR 341

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           +D A  MF  M  KG   +++T++ LI GY +++ +     +  EM E  +  N      
Sbjct: 342 LDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTT 401

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   G    A  L   M+ +G+ P+ +  +TL D
Sbjct: 402 LIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLD 439



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ LFG +      P +I +  ++     + RLD  + L  K+   ++  N+ +FTI
Sbjct: 59  LEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTI 118

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  FC   ++  A   F K+ + G    VVT+S L+ G      +  A D++ +MC+ N
Sbjct: 119 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKPN 178

Query: 128 ISPNIA--------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             GR  EA+ L D ML +G+ P+ +   T+ D
Sbjct: 179 VVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVD 222



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 30/169 (17%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L +E  +  A+ L  ++ + GL+P+ ITY TI+ G C +     A+ L  K+  V  +KP
Sbjct: 189 LCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKP 248

Query: 61  NSITF-----TILIDAFCKEGRMDDATMMFSKMLE-KGPKANVVTYSCLIDGYFKSQNMK 114
           N + +     T +I+ FC  GR  +A  +  +MLE K    +VVTY+ LI+ + K     
Sbjct: 249 NVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKE---- 304

Query: 115 SAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                              G+  EA +LYD ML  GI+P  +  S++ D
Sbjct: 305 -------------------GKFFEAEELYDEMLPRGIIPSTITYSSMID 334



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+ T+I GYC   R+D+ ++LF ++    +  N
Sbjct: 522 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 581

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ A  +F +M+  G   + +T   ++ G +  + +K A  + E
Sbjct: 582 AITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLE 641

Query: 122 EM 123
           ++
Sbjct: 642 DL 643


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 99/172 (57%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H++ A  L+ ++  +G+ P+++TY+ +I G+ ++ +L +A+ LF K+    +KP+  
Sbjct: 209 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVY 268

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FCK+G+M +   +F+ M+++G K NVVTY  L+DGY   + +  A  +   M
Sbjct: 269 TFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM 328

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  ++P+I              +  EAM L+  M    I+PD +  ++L D
Sbjct: 329 SQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLID 380



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 76/134 (56%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALKL  ++ DRG+ PDIITY++I+   C  +++D+A+ L  KL    ++PN  T+TILID
Sbjct: 391 ALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILID 450

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR++DA  +F  +L KG    V TY+ +I G+        A  +  +M +N+  P
Sbjct: 451 GLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIP 510

Query: 131 NIAGRPTEAMQLYD 144
           +          L+D
Sbjct: 511 DAVTYEIIIRSLFD 524



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL     +   G + D + Y T+I G C +     A+ L  ++    ++PN + ++ 
Sbjct: 143 IHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYST 202

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK+  ++DA  ++S+M+ KG   NVVTYS LI G+F    +K A D++ +M   N
Sbjct: 203 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILEN 262

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I P++             G+  E   ++  M++ GI P+ +   +L D
Sbjct: 263 IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMD 310



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 91/161 (56%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  + + PD++TYN++I G C L ++  A++L +++    + P+ IT++ 
Sbjct: 353 VDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSS 412

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN- 126
           ++DA CK  ++D A  + +K+ ++G + N+ TY+ LIDG  K   ++ A +++E++    
Sbjct: 413 ILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472

Query: 127 -NISPNI----------AGRPTEAMQLYDSMLRNGIMPDGL 156
            NI+ N            G   EA+ L   M  N  +PD +
Sbjct: 473 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAV 513



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 88/161 (54%), Gaps = 14/161 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +   ++ RG+ PDI +YN +I G+C + ++DEA+ LF+++    + P+
Sbjct: 314 LVKE--VNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPD 371

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK G++  A  +  +M ++G   +++TYS ++D   K+  +  A  +  
Sbjct: 372 VVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLT 431

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           ++ +  I PN+             GR  +A  +++ +L  G
Sbjct: 432 KLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 74/129 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +     +F  +  +G++P+++TY +++ GYC +  +++A  +   ++   + P+  
Sbjct: 279 KDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQ 338

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILID FCK  ++D+A  +F +M  K    +VVTY+ LIDG  K   +  A  + +EM
Sbjct: 339 SYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEM 398

Query: 124 CENNISPNI 132
            +  + P+I
Sbjct: 399 HDRGVPPDI 407



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  P+ IT+ T+I G C   ++ +A+   + +  +  + + + +  LI   CK G    A
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  ++     + NVV YS +IDG  K +++  AFD+Y EM    ISPN+         
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               G+  +A+ L++ M+   I PD    + L D
Sbjct: 242 FFTVGQLKDAIDLFNKMILENIKPDVYTFNILVD 275



 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  +F  L  +G    + TY  +I G+C+    DEA+ L  K+      P+
Sbjct: 452 LCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPD 511

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++T+ I+I +   +   D A  +  +M+ +G
Sbjct: 512 AVTYEIIIRSLFDKDENDKAEKL-REMITRG 541


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 98/168 (58%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L+ ++  +G+ PD++TY+ +I G+C L +L++A+ LF K+   ++ P+  TF+I
Sbjct: 212 VNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSI 271

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCKEGR+ +A  + + M+++G K +VVTY  L+DGY   + +  A  ++  M +  
Sbjct: 272 LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGG 331

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ N+              +  EAM L+  M    I+PD +  ++L D
Sbjct: 332 VTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLID 379



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  ALKL  ++ DRG+  D ITYN+I+   C  +++D+A+ L  K+    ++P+
Sbjct: 381 LCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 440

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILID  CK GR+ DA  +F  +L KG    V TY+ +I G+  +     A  +  
Sbjct: 441 MYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLS 500

Query: 122 EMCENNISPN 131
           +M +N   PN
Sbjct: 501 KMEDNGCIPN 510



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   +  +F  +  +G EP+ IT  T+I G C   ++ +A+   +K+  +    N + + 
Sbjct: 106 HTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYG 165

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK G+   A  +  ++  K  + NVV Y+ +ID   K + +  AFD+Y EM   
Sbjct: 166 TLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK 225

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP++             G+  +A+ L++ M+   I PD    S L D
Sbjct: 226 GISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVD 274



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 86/161 (53%), Gaps = 14/161 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+  ++ A  +F  +   G+  ++ +YN +I G+C + ++DEA+ LF+++ C  + P+
Sbjct: 313 LVKQ--VNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPD 370

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK G++  A  +  +M ++G   + +TY+ ++D   K+  +  A  +  
Sbjct: 371 VVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLT 430

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           +M +  I P++             GR  +A  +++ +L  G
Sbjct: 431 KMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKG 471



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +   +  +G++PD++TY +++ GYC + ++++A  +F  +    +  N  
Sbjct: 278 KEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQ 337

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ I+I+ FCK  ++D+A  +F +M  K    +VVTY+ LIDG  KS  +  A  + +EM
Sbjct: 338 SYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEM 397

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  +  +               +  +A+ L   M   GI PD    + L D
Sbjct: 398 HDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILID 449



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++ D G++PD+ TY  +I G C   RL +A  +FE L        
Sbjct: 416 LCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNIT 475

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I  FC     D A  + SKM + G   N  TY  +I   F+      A  +  
Sbjct: 476 VYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLR 535

Query: 122 EM 123
           EM
Sbjct: 536 EM 537



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A+ L  ++   G+  D++T+N +I  +  L     +  +F  +     +PN+IT T LI
Sbjct: 74  TAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLI 133

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C +G++  A     K++  G   N V Y  LI+G  K     +A  +   +    + 
Sbjct: 134 KGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQ 193

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           PN+    T            EA  LY  M+  GI PD +  S L
Sbjct: 194 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSAL 237



 Score = 43.9 bits (102), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 69/161 (42%), Gaps = 12/161 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++ +    P I  +  I+     +N    A+ L  ++    +  + +TF ILI+ F +
Sbjct: 44  FNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQ 103

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--- 131
            G    +  +F+ +L+KG + N +T + LI G      +  A   ++++       N   
Sbjct: 104 LGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVC 163

Query: 132 ---------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      G+ + A+QL   +    + P+ ++ +T+ D
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIID 204



 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 51/111 (45%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  +F  L  +G    + TY  +I G+C  +  D+A+ L  K+      PN
Sbjct: 451 LCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPN 510

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           + T+ I+I +  ++   D A  +  +M+ +G         CL   +F+ ++
Sbjct: 511 AKTYEIIILSLFEKDENDMAEKLLREMIARGLLFGWKKAYCLFTRFFQRRS 561


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  L+E  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA ++F +ML+KG   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M+  G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGN 321



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M+ KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L +++    LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G  P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKP 414



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYKPSVV 417



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++ G+     +  A  +F+ +T   L+P+ ++F  L++ + K G +++ 
Sbjct: 131 GYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A  +++EM +  + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G K +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 100/176 (56%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  L+E  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA ++F +ML+KG   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M+  G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGN 321



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M+ KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L +++    LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +++ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A  +++EM +  + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 100/172 (58%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++   ++ +RG+ P++ TYN+I+ G+C+L +L+EA +LF+++    + PN
Sbjct: 243 LCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPN 302

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TFTIL+D  CKEG + +A ++F  M EKG + ++ TY+ L+DGY   + M  A  V+E
Sbjct: 303 TVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFE 362

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P     NI       + R  EA  L   M    + PD +  STL
Sbjct: 363 IMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 414



 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D ++ + G++   G+ PD IT+N +I G C+  ++ EAV+LF ++     +PN I++T
Sbjct: 143 HVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYT 202

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +F KM + G K NVVTYS +ID   K + +  A +   EM E 
Sbjct: 203 TVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVER 262

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I PN+             G+  EA +L+  M+   +MP+ +  + L D
Sbjct: 263 GIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVD 311



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 13/179 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A++LF ++  RG EP++I+Y T+I G C       AV +F+K+     KPN
Sbjct: 173 LCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPN 232

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ +ID+ CK+  ++DA    S+M+E+G   NV TY+ ++ G+     +  A  +++
Sbjct: 233 VVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFK 292

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQ 167
           EM   ++ PN              G  +EA  ++++M   G+ PD    + L D Y LQ
Sbjct: 293 EMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQ 351



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L  ++  + L PD +TY+T++ G C L R  EA+ LF+++      PN +
Sbjct: 385 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLV 444

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+D FCK G +D+A  +   M EK  + N+V Y+ LI+G F +  ++ A +++ ++
Sbjct: 445 TYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKL 504

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             +   P+I             G   EA  L+  M  +G +P+    + +    LQ+  S
Sbjct: 505 FGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDS 564



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 21/177 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K+F  +  +G  P   +YN +I GYC   R+DEA  L  ++    L P+++T++ 
Sbjct: 354 MNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYST 413

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C+ GR  +A  +F +M   GP  N+VTY  L+DG+ K  ++  A  + + M E  
Sbjct: 414 LMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKK 473

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPD---------GLLLSTLAD 163
           + PN            IAG+   A +L+  +  +G  PD         GLL   L+D
Sbjct: 474 LEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSD 530



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F  +T++G+EPDI TYN ++ GYC    ++EA ++FE +      P 
Sbjct: 313 LCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPG 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + ++ ILI+ +CK  RMD+A  + ++M  K    + VTYS L+ G  +    K A ++++
Sbjct: 373 AHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFK 432

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EMC     PN+             G   EA++L  SM    + P+
Sbjct: 433 EMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPN 477



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 12/141 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           ++ + N +I   C LN +D +V +  K+  + + P++ITF  LI+  C EG++ +A  +F
Sbjct: 127 NVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELF 186

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT-------- 137
           ++M+++G + NV++Y+ +I+G  K+ N   A DV+++M +N   PN+    T        
Sbjct: 187 NEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKD 246

Query: 138 ----EAMQLYDSMLRNGIMPD 154
               +AM+    M+  GI P+
Sbjct: 247 RLVNDAMEFLSEMVERGIPPN 267



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 73/130 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  HLD ALKL   + ++ LEP+I+ Y  +I G     +L+ A +LF KL     +P+  
Sbjct: 455 KHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIR 514

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T++I    KEG  D+A  +F KM + G   N  +Y+ +I G+ ++Q+  +A  + +EM
Sbjct: 515 TYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 574

Query: 124 CENNISPNIA 133
                S N++
Sbjct: 575 VGKRFSVNLS 584



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL  F ++      P ++ +   +  +    +    V L  ++   ++  N  +  I
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C+   +D +  +  KM + G   + +T++ LI+G      +K A +++ EM +  
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN+             G  + A+ ++  M +NG  P+ +  ST+ D
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIID 241



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF +L   G  PDI TY  +I G       DEA  LF K+      PNS ++ +
Sbjct: 494 LEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNV 553

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +I  F +      A  +  +M+ K    N+ T+  L+D
Sbjct: 554 MIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE   D A  LF ++ D G  P+  +YN +I G+        A++L +++   +   N
Sbjct: 523 LLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVN 582

Query: 62  SITFTILID 70
             TF +L+D
Sbjct: 583 LSTFQMLLD 591


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 102/220 (46%), Gaps = 55/220 (25%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+L   +  +GLE D+  YN+I  G C LNR DEA  L   +    + PN+++FT 
Sbjct: 420 VDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTT 479

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF---------- 117
           LID +CKEG   +A  +F +M EKG   N++TY+ LIDGY K  NMK A           
Sbjct: 480 LIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRG 539

Query: 118 ---DVY----------------------EEMCENNISPNIA------------GRPTEAM 140
              DVY                      +EM +  + PN+             GR  EA 
Sbjct: 540 LIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAF 599

Query: 141 QLYDSMLRNGIMPDGLLLSTLA--------DYNLQSSGSQ 172
           +LYD M   G+ PD  + S+L           ++Q  GSQ
Sbjct: 600 KLYDEMKETGLTPDDTVYSSLVGSLHSADESISMQIQGSQ 639



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 75/128 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   A ++F ++ ++G  P+IITYN +I GY     + EA +L ++L    L P+  
Sbjct: 486 KEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVY 545

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T LI   C +G++D A  +F +M ++G   NVVTY+ +I G  K    + AF +Y+EM
Sbjct: 546 TCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEM 605

Query: 124 CENNISPN 131
            E  ++P+
Sbjct: 606 KETGLTPD 613



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A +LF ++ ++G+E D+  Y +II   C    +  A+ LF+++T   L P++ T+  
Sbjct: 315 IEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGA 374

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK G+M+ A M+ ++M  KG   N V ++ LIDGY +S  +  A  +   M +  
Sbjct: 375 LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG 434

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  ++              R  EA  L  SM+  G+ P+ +  +TL D
Sbjct: 435 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLID 482



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 26/181 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLD-----EAVQLFEK--LT 54
           L K   ++   KL  ++  +G++ +++TYN  I GY    RLD     E + L EK  + 
Sbjct: 239 LCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGY--FKRLDLGGVAEILTLMEKEGVA 296

Query: 55  CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           C     N +T+T+LI  F   G++++A  +F +M EKG +A+V  Y+ +I    +S N+K
Sbjct: 297 C-----NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 351

Query: 115 SAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            A  +++EM +  + P+             AG+   A  L + M   GI  + ++ +TL 
Sbjct: 352 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 411

Query: 163 D 163
           D
Sbjct: 412 D 412



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 47/198 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +  ++  AL LF ++TD+GL P   TY  +I G C   +++ A  L  ++    +  N +
Sbjct: 346 RSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPV 405

Query: 64  TFTILIDAFCKEG-----------------------------------RMDDATMMFSKM 88
            F  LID +C+ G                                   R D+A  +   M
Sbjct: 406 IFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSM 465

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           +E+G   N ++++ LID Y K  N   A  V+ EM E    PNI             G  
Sbjct: 466 VERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNM 525

Query: 137 TEAMQLYDSMLRNGIMPD 154
            EA +L D +   G++PD
Sbjct: 526 KEAHKLKDELENRGLIPD 543



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 59/101 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++  A KL  +L +RGL PD+ T  ++I G C   ++D A++LF+++    L PN +
Sbjct: 521 KRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV 580

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           T+T +I    K+GR ++A  ++ +M E G   +   YS L+
Sbjct: 581 TYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 621



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+ F  +  +G   D  +    +       ++D  ++ F ++  + ++    + TI++D
Sbjct: 178 ALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLD 237

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G ++    +  ++  KG KANVVTY+  I+GYFK  ++    ++   M +  ++ 
Sbjct: 238 GLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC 297

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           N+             G+  EA +L++ M   GI  D  + +++   N +S
Sbjct: 298 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRS 347



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D+ L+ F ++ +  +E  + +   ++ G C    ++   +L +++    +K N +T+ 
Sbjct: 209 QVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYN 268

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             I+ + K   +     + + M ++G   NVVTY+ LI G+     ++ A  ++EEM E 
Sbjct: 269 AFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREK 328

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            I  ++            +G    A+ L+D M   G++P
Sbjct: 329 GIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIP 367



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L    ++   +   G+  +++TY  +I G+ ++ +++EA +LFE++    ++ +  
Sbjct: 276 KRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVY 335

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +I   C+ G +  A ++F +M +KG   +  TY  LI G  K+  M++A  +  EM
Sbjct: 336 VYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEM 395

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
               I  N             +G   EA++L   M + G+  D    +++A
Sbjct: 396 QGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIA 446


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+L   +  +GLE D+  YN+I  G C LNR DEA  L   +    + PN+++FT 
Sbjct: 416 VDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTT 475

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CKEG   +A  +F +M EKG   N++TY+ LIDGY K  NMK A  + +E+    
Sbjct: 476 LIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRG 535

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           + P+            I G+   A++L+D M + G++P+
Sbjct: 536 LIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPN 574



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 75/128 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   A ++F ++ ++G  P+IITYN +I GY     + EA +L ++L    L P+  
Sbjct: 482 KEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVY 541

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T LI   C +G++D A  +F +M ++G   NVVTY+ +I G  K    + AF +Y+EM
Sbjct: 542 TCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEM 601

Query: 124 CENNISPN 131
            E  ++P+
Sbjct: 602 KETGLTPD 609



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L   + +RG+ P+ +++ T+I  YC      EA ++F ++      PN IT+ +L
Sbjct: 452 DEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVL 511

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID + K G M +A  +  ++  +G   +V T + LI G      +  A  +++EM +  +
Sbjct: 512 IDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL 571

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            PN+             GR  EA +LYD M   G+ PD  + S+L 
Sbjct: 572 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A +LF ++ ++G+E D+  Y +II   C    +  A+ LF+++T   L P++ T+  
Sbjct: 311 IEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGA 370

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK G+M+ A M+ ++M  KG   N V ++ LIDGY +S  +  A  +   M +  
Sbjct: 371 LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG 430

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  ++              R  EA  L  SM+  G+ P+ +  +TL D
Sbjct: 431 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLID 478



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 26/181 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLD-----EAVQLFEK--LT 54
           L K   ++   KL  ++  +G++ +++TYN  I GY    RLD     E + L EK  + 
Sbjct: 235 LCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGY--FKRLDLGGVAEILTLMEKEGVA 292

Query: 55  CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           C     N +T+T+LI  F   G++++A  +F +M EKG +A+V  Y+ +I    +S N+K
Sbjct: 293 C-----NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVK 347

Query: 115 SAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            A  +++EM +  + P+             AG+   A  L + M   GI  + ++ +TL 
Sbjct: 348 RALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLI 407

Query: 163 D 163
           D
Sbjct: 408 D 408



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 47/198 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +  ++  AL LF ++TD+GL P   TY  +I G C   +++ A  L  ++    +  N +
Sbjct: 342 RSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPV 401

Query: 64  TFTILIDAFCKEG-----------------------------------RMDDATMMFSKM 88
            F  LID +C+ G                                   R D+A  +   M
Sbjct: 402 IFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSM 461

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           +E+G   N ++++ LID Y K  N   A  V+ EM E    PNI             G  
Sbjct: 462 VERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNM 521

Query: 137 TEAMQLYDSMLRNGIMPD 154
            EA +L D +   G++PD
Sbjct: 522 KEAHKLKDELENRGLIPD 539



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 59/101 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++  A KL  +L +RGL PD+ T  ++I G C   ++D A++LF+++    L PN +
Sbjct: 517 KRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV 576

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           T+T +I    K+GR ++A  ++ +M E G   +   YS L+
Sbjct: 577 TYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+ F  +  +G   D  +    +       ++D  ++ F ++  + ++    + TI++D
Sbjct: 174 ALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLD 233

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G ++    +  ++  KG KANVVTY+  I+GYFK  ++    ++   M +  ++ 
Sbjct: 234 GLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC 293

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           N+             G+  EA +L++ M   GI  D  + +++   N +S
Sbjct: 294 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRS 343



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D+ L+ F ++ +  +E  + +   ++ G C    ++   +L +++    +K N +T+ 
Sbjct: 205 QVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYN 264

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             I+ + K   +     + + M ++G   NVVTY+ LI G+     ++ A  ++EEM E 
Sbjct: 265 AFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREK 324

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            I  ++            +G    A+ L+D M   G++P
Sbjct: 325 GIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIP 363



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 4/161 (2%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K   L    ++   +   G+  +++TY  +I G+ ++ +++EA +LFE++    ++ + 
Sbjct: 271 FKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADV 330

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +T +I   C+ G +  A ++F +M +KG   +  TY  LI G  K+  M++A  +  E
Sbjct: 331 YVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNE 390

Query: 123 MCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I  N    P     L D    +G++ + L L  + +
Sbjct: 391 MQGKGIDLN----PVIFNTLIDGYCESGMVDEALRLQVVME 427


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  L+E  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA ++F +ML+KG   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M+  G+ PD    +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGN 321



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M+ KG K +  TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L +++    LKP+  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKF 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G  P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKP 414



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL+PD  TY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++     + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYKPSVV 417



 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +++ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A  +++EM +  + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G K +VVT
Sbjct: 383 TYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  L+E  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA ++F +ML+KG   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M+  G+ PD    +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGN 321



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M+ KG K +  TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L +++    LKP+  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKF 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G  P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKP 414



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL+PD  TY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYKPSVV 417



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +++ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A  +++EM +  + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G K +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 99/205 (48%), Gaps = 47/205 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +D ALK+   +   G+E DI TYNT+ CG C +NRLDEA  L   +  + + PN +
Sbjct: 364 RKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYV 423

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY-----------FKSQN 112
           T+T LI   CK+G M +A  +F +M EKG   +VVTY+ +IDGY           F+ + 
Sbjct: 424 TYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEM 483

Query: 113 MKSAF--DVY----------------------EEMCENNISPNIA------------GRP 136
            K  F  DVY                      EEM +    PN+             GR 
Sbjct: 484 EKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRS 543

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
             A QLYD ML+ G++PD  L S L
Sbjct: 544 EAAFQLYDDMLKAGLIPDDSLYSAL 568



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++    +  D+  Y  +I  YC    +  A ++ ++     ++PN  T+ +LI+ FC
Sbjct: 269 LFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFC 328

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G+M+ A M+ + M  +G   N + ++ +IDGY +   +  A  +   M +  +  +I 
Sbjct: 329 KIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIY 388

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        R  EA  L   M+  G++P+ +  +TL
Sbjct: 389 TYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTL 428



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+  +    G+EP+  TY  +I G+C + +++ A  L   +    +  N I F  +ID
Sbjct: 301 AAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMID 360

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++G +DDA  + + M + G + ++ TY+ L  G  +   +  A  +   M E  + P
Sbjct: 361 GYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVP 420

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N              G   EA +L+  M   G  P  +  + + D
Sbjct: 421 NYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMID 465



 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A +   ++  +G  PD+ TY +++ G+C   ++D A++LFE++     +PN +
Sbjct: 469 KKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVV 528

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            +T LI    KEGR + A  ++  ML+ G   +   YS L+ G   + N K
Sbjct: 529 AYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV-GSLHTDNRK 578



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALKLF ++  RG EP+++ Y  +I G     R + A QL++ +    L P+   ++ 
Sbjct: 508 VDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSA 567

Query: 68  LIDAFCKEGRMD 79
           L+ +   + R D
Sbjct: 568 LVGSLHTDNRKD 579



 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 64/139 (46%), Gaps = 12/139 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           +  + ++ G C   R+D+A +L + +    +  N++ +  L+D + ++        +   
Sbjct: 178 LAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEI 237

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M  +G +A V TY+ L+D    ++++     ++ EM  NN+  ++            AG 
Sbjct: 238 MENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGN 297

Query: 136 PTEAMQLYDSMLRNGIMPD 154
              A ++ D  + NG+ P+
Sbjct: 298 MRRAAKVLDECVGNGVEPN 316



 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 49/99 (49%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + + G+E  + TY  ++    +   + +   LF ++    +  +   +T +I+A+C+ G 
Sbjct: 238 MENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGN 297

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           M  A  +  + +  G + N  TY  LI+G+ K   M++A
Sbjct: 298 MRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAA 336


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 89/152 (58%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGLEPDI TY T++ G+C   R+ E+ +LF+ +  + +KP+ IT+  LID
Sbjct: 298 ARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLID 357

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  G+MD+AT + + M+  G K ++VTY  LI+GY +   M  A  +++EM  + +SP
Sbjct: 358 GCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSP 417

Query: 131 NI------------AGRPTEAMQLYDSMLRNG 150
           NI              R   A +LY S+ ++G
Sbjct: 418 NIITYNIILQGLFHTRRTAAAKELYVSITKSG 449



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+++   +   G+ PD +TYN+I+ GYCS  +  EA+   +K+    ++PN +T++ 
Sbjct: 225 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 284

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CK GR  +A  +F  M ++G + ++ TY  L+ G+ K   +  +  +++ M    
Sbjct: 285 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIG 344

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+I            AG+  EA +L  SM+  G+ PD +   TL
Sbjct: 345 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 390



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 13/179 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KL   +   G++PDI+TY T+I GYC ++R+D+A+ LF+++    + PN IT+ I
Sbjct: 365 MDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 424

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++       R   A  ++  + + G +  + TY+ ++ G  K+     A  +++ +C  +
Sbjct: 425 ILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 484

Query: 128 I-----SPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           +     + NI        GR  EA  L+ +   NG++PD    S +A+ NL   GS E 
Sbjct: 485 LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAE-NLIEQGSLEE 542



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 23/169 (13%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+ G  PD+ +YN ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 145 DAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204

Query: 66  TILIDAFCKEG--------RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             +++ F KEG         MD A  + + M++ G   + +TY+ ++ GY  S   K A 
Sbjct: 205 NTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 264

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
              ++M  + + PN+             GR TEA +++DSM + G+ PD
Sbjct: 265 GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 313



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T  G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 437 AAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 496

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GRMD+A  +F+     G   +V TYS + +   +  +++   D++  M EN  S
Sbjct: 497 GALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCS 556

Query: 130 PN 131
            +
Sbjct: 557 AD 558



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 24/194 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL-FEKLTCVQLKPNS 62
           +   LD      G +  +G   D IT+  ++ G C+  R  +A+ +   ++T +   P+ 
Sbjct: 104 RAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDV 163

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVTYSCLIDGYFK--------SQ 111
            ++  L+   C E R  +A  +   M +    G   +VV+Y+ +++G+FK        +Q
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQ 223

Query: 112 NMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
            M  A +V   M +N + P+             +G+P EA+     M  +G+ P+ +  S
Sbjct: 224 AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 283

Query: 160 TLADYNLQSSGSQE 173
           +L +Y  ++  S E
Sbjct: 284 SLMNYLCKNGRSTE 297



 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 45/88 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I       R+DEA  LF   +   L P+  T++++
Sbjct: 471 DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLM 530

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  A+
Sbjct: 531 AENLIEQGSLEELDDLFLSMEENGCSAD 558



 Score = 38.9 bits (89), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFTI 67
           A  +F +L  RG    I   N  +    + +    AV  + ++      ++ P   T+ I
Sbjct: 39  ARHVFDELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGAGKVTPTVHTYAI 97

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C+ GR+D        +++KG + + +T++ L+ G    +    A D V   M E 
Sbjct: 98  LIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 157

Query: 127 NISPNI 132
              P++
Sbjct: 158 GCIPDV 163


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA ++F +ML+KG   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M+  G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGN 321



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M+ KG   + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPE 380



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L +++    L P+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A  +++EM +  + PN          
Sbjct: 191 FRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  AL +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 152 KEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY 211

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML+KG   N VT++ LIDG+ K+  +  A +VY++M
Sbjct: 212 TYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQM 271

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 272 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLID 323



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 220 LCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPD 279

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + ++Y+ LIDG  K  ++++AF+  +
Sbjct: 280 LITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRK 339

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 340 RMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPD 384



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A+ +F+ +T   L+P+
Sbjct: 115 LMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPS 174

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 175 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 234

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 235 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTL 286



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL+PD I+Y T+I G C    L+ A +  +++    ++ +
Sbjct: 290 LCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 349

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G + +  TY+ +I+ + K  ++ +   + +
Sbjct: 350 DVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLK 409

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 410 EMQRDGHVPSVV 421



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V L+P++ 
Sbjct: 327 KEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTG 386

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 387 TYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+KG   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M+  G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGN 321



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M+ KG   + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPE 380



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L +++    L P+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A  +++EM +  + PN          
Sbjct: 191 FRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D AL LF ++  +G  P+++TYNT+I GYC L ++D+  +L   +    L+PN I++ 
Sbjct: 220 NIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYN 279

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++I+  C+EGRM + + + ++M  +G   + VTY+ LI GY K  N   A  ++ EM  +
Sbjct: 280 VVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++P++            AG    AM+  D M   G+ P+    +TL D
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVD 388



 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 101/179 (56%), Gaps = 12/179 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A ++  ++ D G  P ++TYN +I G+C   ++++A+ + E +    L P+ ++++
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++  FC+   +D+A  +  +M+EKG K + +TYS LI G+ + +  K A D+YEEM   
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            + P+            + G   +A+QL++ M+  G++PD +  S L +   + S ++E
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 36/195 (18%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++  ++ ++G++PD ITY+++I G+C   R  EA  L+E++  V L P+  T+T 
Sbjct: 466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTA 525

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-----YEE 122
           LI+A+C EG ++ A  + ++M+EKG   +VVTYS LI+G  K    + A  +     YEE
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585

Query: 123 MCENNISPN----------------------IAGRPTEAMQLYDSMLRNGIMPDGLLLST 160
              ++++ +                      + G  TEA Q+++SML     PDG     
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDG----- 640

Query: 161 LADYNLQSSGSQEHC 175
              YN+   G   HC
Sbjct: 641 -TAYNIMIHG---HC 651



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   AL +  ++   GL P +ITY ++I   C    ++ A++  +++    L PN  
Sbjct: 322 KEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNER 381

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+D F ++G M++A  +  +M + G   +VVTY+ LI+G+  +  M+ A  V E+M
Sbjct: 382 TYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDM 441

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  +SP++    T            EA+++   M+  GI PD +  S+L     +   +
Sbjct: 442 KEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRT 501

Query: 172 QEHC 175
           +E C
Sbjct: 502 KEAC 505



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +++ A++   Q+  RGL P+  TY T++ G+     ++EA ++  ++      P+ +
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+  C  G+M+DA  +   M EKG   +VV+YS ++ G+ +S ++  A  V  EM
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  I P+       I G     R  EA  LY+ MLR G+ PD    + L +
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +     +  ++  RG   D +TYNT+I GYC      +A+ +  ++    L P+
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPS 344

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+T LI + CK G M+ A     +M  +G   N  TY+ L+DG+ +   M  A+ V  
Sbjct: 345 VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +N  SP++             G+  +A+ + + M   G+ PD +  ST+
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTV 456



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 13/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFT 66
           +D AL +       G  P +++YN ++       R +  A  +F+++   Q+ PN  T+ 
Sbjct: 150 IDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYN 209

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI  FC  G +D A  +F KM  KG   NVVTY+ LIDGY K + +   F +   M   
Sbjct: 210 ILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK 269

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+             GR  E   +   M R G   D +  +TL
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 15/137 (10%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L+ AL+L  ++ ++G+ PD++TY+ +I G    +R  EA +L  KL   +  P+ +T
Sbjct: 533 EGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVT 592

Query: 65  FTILID---------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +  LI+                FC +G M +A  +F  ML K  K +   Y+ +I G+ +
Sbjct: 593 YHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCR 652

Query: 110 SQNMKSAFDVYEEMCEN 126
           + +++ A+ +Y+EM ++
Sbjct: 653 AGDIRKAYTLYKEMVKS 669



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 56/121 (46%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +  +  +PD   YN +I G+C    + +A  L++++       +++T   L+ 
Sbjct: 624 ADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVK 683

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  KEG++++   +   +L     +       L++   +  NM    DV  EM ++   P
Sbjct: 684 ALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLP 743

Query: 131 N 131
           N
Sbjct: 744 N 744


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE RMD+A  +F +ML+ G   N VT++ LIDG+ K+  +  A D+Y +M
Sbjct: 208 TYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQM 267

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                SP++             G   +A  L D M R G+ PD +  +TL D
Sbjct: 268 LNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLID 319



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LFG++ D GL P+ +T+ T+I G+C   RLD A+ ++ ++      P+
Sbjct: 216 LCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF++ E
Sbjct: 276 VVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRE 335

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + +I  +              GR  +A ++   MLR G+ PD
Sbjct: 336 RMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPD 380



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   LD   +L   +   G++PD+ TY+ +I G C  +R+DEA  LF ++    L PN 
Sbjct: 182 IKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK GR+D A  ++ +ML +G   +VVTY+ LI G  K  ++K A  + +E
Sbjct: 242 VTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDE 301

Query: 123 MCENNISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGLLLSTL 161
           M    + P+       I G   E     A +L + M++  I  D ++ + L
Sbjct: 302 MSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTAL 352



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +L E++    ++ +
Sbjct: 286 LCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +++ + K  ++K A ++  
Sbjct: 346 DVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLR 405

Query: 122 EMCENNISP 130
           EM  N   P
Sbjct: 406 EMQRNGRVP 414



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 111 LMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + K G +D+   + + M   G + +V TYS LI+G  K   M  A  ++ 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFG 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +N + PN              GR   AM +Y  ML  G  PD +  +TL
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTL 282



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +L  ++    +  D + Y  +I G C   R  +A ++  ++  V LKP+  
Sbjct: 323 KEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDE 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++++ FCK+G +  A+ +  +M   G    VVT
Sbjct: 383 TYTMIMNEFCKKGDVKKASELLREMQRNGRVPCVVT 418


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD AL+ F ++  +G  P+++TYNT+I GYC L ++D+  +L   +    L+PN I++ 
Sbjct: 220 NLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYN 279

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++I+  C+EGRM + + + ++M ++G   + VTY+ LI GY K  N   A  ++ EM  +
Sbjct: 280 VVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +SP++            AG    A +  D M   G+ P+    +TL D
Sbjct: 340 GLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVD 388



 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 36/195 (18%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++  ++  +G++PD ITY+++I G+C   R  EA  LF+++  V L P+  T+T 
Sbjct: 466 VDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTA 525

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-----YEE 122
           LI+A+C EG +  A  + ++M+EKG   +VVTYS LI+G  K    + A  +     YEE
Sbjct: 526 LINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEE 585

Query: 123 MCENNISPN----------------------IAGRPTEAMQLYDSMLRNGIMPDGLLLST 160
              ++++ +                      + G  TEA Q+++SML     PDG     
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDG----- 640

Query: 161 LADYNLQSSGSQEHC 175
              YN+   G   HC
Sbjct: 641 -TAYNVMIHG---HC 651



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 94/169 (55%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A ++  ++ D G  P ++TYN +I G+C   ++ +A+ + E +    L P+ ++++
Sbjct: 395 YMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYS 454

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++  FC+   +D+A  +  KM+ KG K + +TYS LI G+ + +  K A D+++EM   
Sbjct: 455 TVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRV 514

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + P+            + G   +A+QL++ M+  G++PD +  S L +
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLIN 563



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 12/184 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   AL +  ++   GL P +ITY ++I   C    ++ A +  +++    L PN  
Sbjct: 322 KEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNER 381

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+D F ++G M++A  +  +M++ G   +VVTY+ LI+G+  +  M  A  V E+M
Sbjct: 382 TYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDM 441

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  ++P++    T            EA+++   M+  GI PD +  S+L     +   +
Sbjct: 442 KEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRT 501

Query: 172 QEHC 175
           +E C
Sbjct: 502 KEAC 505



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++  RG   D +TYNT+I GYC      +A+ +  ++    L P+ IT+T LI + CK G
Sbjct: 300 EMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAG 359

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----- 131
            M+ AT    +M  +G   N  TY+ L+DG+ +   M  A+ V +EM +N  SP+     
Sbjct: 360 NMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYN 419

Query: 132 -------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  IAG+  +A+ + + M   G+ PD +  ST+
Sbjct: 420 ALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTV 456



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +++ A +   Q+  RGL P+  TY T++ G+     ++EA ++ +++      P+ +
Sbjct: 357 KAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVV 416

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+  C  G+M DA  +   M EKG   +VV+YS ++ G+ +S ++  A  V  +M
Sbjct: 417 TYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKM 476

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I P+       I G     R  EA  L+D MLR G+ PD    + L +
Sbjct: 477 VAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALIN 528



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 1/128 (0%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSIT 64
           C +D AL +       G  P +++YN ++       R +  A  +F+++   Q+ PN  T
Sbjct: 148 CLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFT 207

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           + ILI  FC  G +D A   F +M +KG   NVVTY+ LIDGY K + +   F++   M 
Sbjct: 208 YNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMA 267

Query: 125 ENNISPNI 132
              + PN+
Sbjct: 268 LKGLEPNL 275



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 15/137 (10%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L  A++L  ++ ++G+ PD++TY+ +I G     R  EA +L  KL   +  P+ +T
Sbjct: 533 EGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVT 592

Query: 65  FTILID---------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +  LI+                FC +G M +A  +F  MLEK  K +   Y+ +I G+ +
Sbjct: 593 YHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCR 652

Query: 110 SQNMKSAFDVYEEMCEN 126
             +++ A+ +Y+EM ++
Sbjct: 653 GGDIRKAYSLYKEMVKS 669



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 57/121 (47%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  + ++  +PD   YN +I G+C    + +A  L++++       +++T   L+ 
Sbjct: 624 ADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVK 683

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              KEG++++   + + +L     +       L++   +  NM    DV  EM ++   P
Sbjct: 684 TLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLP 743

Query: 131 N 131
           N
Sbjct: 744 N 744



 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 32  TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
           ++I G+C    + EA Q+FE +     KP+   + ++I   C+ G +  A  ++ +M++ 
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKS 669

Query: 92  GPKANVVTYSCLIDGYFK 109
           G   + VT   L+    K
Sbjct: 670 GFLLHTVTVIALVKTLHK 687


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L G++ D    PD+ITY T++  +C + RLD+A +LF+++   +L P+ +TFT 
Sbjct: 303 MDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTS 362

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  C EGRM+DA  +  ++  +G    + TY+C++DGY KS  ++ A ++  +     
Sbjct: 363 LVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRG 422

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
             PN             AGR  +A+Q  D +   G
Sbjct: 423 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 457



 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 16/159 (10%)

Query: 8   LDAALKLF-GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           LD A+ L  G++T RG  PDI+TY+T+I G C   RL +AV +FE+++C    P +IT+ 
Sbjct: 235 LDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA---PTAITYN 291

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  +C+ G MD+A  +  KM++     +V+TY+ L+  + K   +  A++++++M  N
Sbjct: 292 SLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVAN 351

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
            +SP++             GR  +A++L + + R G  P
Sbjct: 352 KLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 390



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 14/166 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  ++ AL+L  ++T RG  P I TYN ++ GYC  N++ +A +L          PN
Sbjct: 367 LCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPN 426

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM-LEKGP-KANVVTYSCLIDGYFKSQNMKSAFDV 119
           ++T+ IL+   C+ GR D A     ++  E GP   +V  Y+ ++D   +      A   
Sbjct: 427 TVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQF 486

Query: 120 YEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMP 153
           YEEM +    P  A             +P +A +L + M++ G  P
Sbjct: 487 YEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTP 532



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 14/158 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  AL ++ Q+ D    PD +TY  ++ G     RL +AVQ+ +++   +  P+
Sbjct: 125 LCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPD 183

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VY 120
           + T T+++ + C   R+DDA  +  +ML +G  AN +TYS L+DG  K + +  A   + 
Sbjct: 184 NTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLL 243

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSM 146
            E+     +P+I            AGR  +A+ +++ M
Sbjct: 244 GEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM 281



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 21/179 (11%)

Query: 1   MLIKECHLDAALKLFG-----QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           ++++  H  A L+  G     ++ DRGL PD +  NTI+   C       A+ LF+K+  
Sbjct: 15  VVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAE 74

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           +    N  T+  LI   CK   +D+A  +   M  +G     + ++ +I G  ++  ++ 
Sbjct: 75  LG-AVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRH 133

Query: 116 AFDVYEEMCENNISP-------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           A  VY +M  N+  P             + AGR  +A+Q+   M+    +PD   L+ +
Sbjct: 134 ALGVYRQM--NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVV 190



 Score = 43.5 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 9   DAALKLFGQLTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           D AL+   QL   G      +  Y  I+   C   R D+AVQ +E++      P + TF 
Sbjct: 444 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA 503

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ A CK  +   A  +  +M++ G      T   ++  Y ++  ++ A ++  E+
Sbjct: 504 TVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 560



 Score = 38.9 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 43/87 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++   D A++ + ++  RG  P   T+ T++   C  ++  +A +L E++      P 
Sbjct: 474 LCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPG 533

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM 88
             T   ++ A+C+ G +  A  + S++
Sbjct: 534 PGTCDAVVSAYCRAGMIQKADELASEL 560


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 137 KEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY 196

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML+KG   N VT++ LIDG+ KS  +  A ++Y++M
Sbjct: 197 TYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQM 256

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 257 LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLID 308



 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 205 LCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPD 264

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 265 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRK 324

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 325 RMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPD 369



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K  +       + ++ + G    +  +N ++  +C    +  A  +F  +T   L+P+
Sbjct: 100 MMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPS 159

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 160 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 219

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + PN             +GR   AM++Y  ML   + PD +  +TL
Sbjct: 220 EMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTL 271



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 275 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  +  +ML  G K +  TY+ +I+ + K  ++ +   + +
Sbjct: 335 DVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLK 394

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 395 EMQRDGHVPSVV 406



 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 56/103 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++    LKP++ 
Sbjct: 312 KEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTG 371

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 372 TYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   LD A  L  ++T  G  P+I+TYNTII G+C L R+DEA  L E++     +PN
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 1052

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +T+T+L+DAFCK G+ +DA  +   M+EKG   N+ TY+ L+D + K   ++ A  +  
Sbjct: 1053 VVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLS 1112

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             M +    PN+            A +  E + L + ML N  +PD +  +T+ D
Sbjct: 1113 SMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIID 1166



 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 13/173 (7%)

Query: 2    LIKECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K    D A  L  ++T + G  PDIITYNT+I G C   R+D A +LF ++    L P
Sbjct: 1203 LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAP 1262

Query: 61   NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + +T++I+I + CK   MD+A  +   ML+ G     +TY  LIDG+ K+ N+  A ++ 
Sbjct: 1263 DDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEIL 1322

Query: 121  EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + +      P++             GR  +A +L ++MLR G++PD +  +TL
Sbjct: 1323 QLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTL 1375



 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A++L  ++ D G  P++ +YNT++ G+C  NR++ A+ L E++      P+
Sbjct: 240 LSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPD 299

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++T +I+  CK  ++D+A  +  KM+++G + NV+TY  L+DG+ +  ++  A ++  
Sbjct: 300 VVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVR 359

Query: 122 EMCENNISPNI-----------------------------------------------AG 134
           +M E    PN                                                AG
Sbjct: 360 KMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAG 419

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  EA  L + M+R G  PD   LSTL D
Sbjct: 420 KLREAHDLLEQMIRRGCRPDVACLSTLID 448



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K   +D A +L   +  +G  P+++TY++++ G C   +LDEA  L +++T     PN
Sbjct: 958  LVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPN 1017

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +T+  +ID  CK GR+D+A  +  +M++ G + NVVTY+ L+D + K    + A  + E
Sbjct: 1018 IVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVE 1077

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             M E    PN+                  A QL  SM++ G +P+ +  +T+
Sbjct: 1078 VMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTV 1129



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 8    LDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD+AL+LF ++ + G   PD+ TY+TI+       ++D+A +L E +      PN +T++
Sbjct: 928  LDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYS 987

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             L+   CK G++D+AT +  +M   G   N+VTY+ +IDG+ K   +  A+ + EEM + 
Sbjct: 988  SLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG 1047

Query: 127  NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               PN+             G+  +A+ L + M+  G +P+    ++L D
Sbjct: 1048 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD 1096



 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++TYN+++ G C   R+++A  LF+++    + P+ +T++I+I +FCK+  +D A  M
Sbjct: 508 PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKM 567

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
             +M E     +VVTYS LI+G  K+  +  AFDV++EM     +PN+    T       
Sbjct: 568 LERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCK 627

Query: 138 -----EAMQLYDSMLRNGIMPDGLLLSTL 161
                +A ++ + M +    PD +  + L
Sbjct: 628 INKVEQAAEMLEIMRKQSCTPDSITYTCL 656



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  LF ++   G+ PD++TY+ +I  +C  N LD A ++ E++   +  P+
Sbjct: 520 LCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPD 579

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI+  CK G +D A  +F +ML  G   N+VTY+ LIDG  K   ++ A ++ E
Sbjct: 580 VVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLE 639

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M + + +P+             A R  EA ++   M   G +PD +   TL
Sbjct: 640 IMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTL 691



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 13/174 (7%)

Query: 1    MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            M  K+  ++ A +L   +  +G  P++++YNT+I G C   ++ E V L E++      P
Sbjct: 1097 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVP 1156

Query: 61   NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + +TF  +IDA CK  R+D A  +F+ + E G   N+VTY+ L+ G  KS+    A  + 
Sbjct: 1157 DIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLL 1216

Query: 121  EEMC-ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             EM  +   SP+I            + R   A +L+  ML +G+ PD +  S +
Sbjct: 1217 REMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 1270



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 19/178 (10%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQ 57
            L +   +  A +L  ++   G+  ++I +N +I G CS  +LD A++LF+++    +C  
Sbjct: 887  LCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSC-- 944

Query: 58   LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
              P+  T++ ++D+  K G++DDA  +   M+ KG   NVVTYS L+ G  K+  +  A 
Sbjct: 945  -PPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEAT 1003

Query: 118  DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + + M  +  SPNI             GR  EA  L + M+  G  P+ +  + L D
Sbjct: 1004 ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 1061



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D+A +L          PD++ Y+ +I   C   RL EA    + +   +  P+
Sbjct: 450 LCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPD 509

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++D  CK  R++DA ++F +M   G   +VVTYS +I  + K  N+ SAF + E
Sbjct: 510 VVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLE 569

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E    P++            AG   +A  ++  ML  G  P+ +  +TL D
Sbjct: 570 RMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLID 623



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A++L  ++T+RG  P+ ITYN I+  +C  N ++ A Q+ + +      P++I ++ 
Sbjct: 351 LDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYST 410

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FCK G++ +A  +  +M+ +G + +V   S LID   K+  + SA ++       +
Sbjct: 411 IISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMD 470

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +P++            A R  EA    D M++N   PD +  +++ D
Sbjct: 471 CAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVD 518



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 13/175 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   +   + L  Q+      PDI+T+NTII   C   R+D A +LF  +      PN
Sbjct: 1133 LCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN 1192

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             +T+  L+   CK  R D A  +  +M  K G   +++TY+ +IDG  KS+ +  A+ ++
Sbjct: 1193 LVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLF 1252

Query: 121  EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +M  + ++P+                  EA  + + ML+NG  P  +   TL D
Sbjct: 1253 LQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLID 1307



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 12/144 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD +TYNT+I G    +RLD+A++L E++      PN  ++  ++  FCK  R+++A  +
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             +M+ +G   +VV+Y+ +I+G  K   +  A  V ++M +    PN+            
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 347

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGL 156
            G    A++L   M   G  P+ +
Sbjct: 348 VGDLDGAVELVRKMTERGYRPNAI 371



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 70/143 (48%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   +D A  +   +   G +P  ITY T+I G+C    LD+A+++ + L      P+
Sbjct: 1274 LCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD 1333

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +TF+I ID   K GR+  A  +   ML  G   + VTY+ L+ G+  +   + A D++E
Sbjct: 1334 VVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFE 1393

Query: 122  EMCENNISPNIAGRPTEAMQLYD 144
             M +    P+ A   T    L D
Sbjct: 1394 VMRQCGCEPDNATYTTLVGHLVD 1416



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 70/122 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +F ++   G  P+++TYNT+I G C +N++++A ++ E +      P+
Sbjct: 590 LCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPD 649

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SIT+T LI+  C   R+++A  +  +M +KG   + +TY  L+    K+ N++    + +
Sbjct: 650 SITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLK 709

Query: 122 EM 123
           EM
Sbjct: 710 EM 711



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+K      A  LF    +     D +TY+T+I G+    ++  A +LF+++    LK 
Sbjct: 135 VLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKA 194

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++     ++   C  G+  DA + F +M +  P  + VTY+ +I+G  KS  +  A  + 
Sbjct: 195 HAGVHKSILRGLCDAGQCSDAVLHFREMSKTCP-PDSVTYNTMINGLSKSDRLDDAIRLL 253

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EEM +N  +PN+            A R   A+ L + M+  G  PD +  +T+
Sbjct: 254 EEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTV 306



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  A  L  Q+  RG  PD+   +T+I   C    +D A +L      +   P+ +
Sbjct: 417 KAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVV 476

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ILI A CK  R+ +A      M++     +VVTY+ ++DG  KS+ +  AF +++ M
Sbjct: 477 AYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRM 536

Query: 124 CENNISPNI 132
               + P++
Sbjct: 537 RAAGVMPDV 545



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 9   DAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           DAAL  F   T + G   D  T N ++     L R  +A+Q++    C    PN  TFTI
Sbjct: 825 DAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCCS--PNMFTFTI 882

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G +  A  +  +M   G   NV+ ++ +I G   ++ + SA ++++EM E+ 
Sbjct: 883 LIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESG 942

Query: 128 ISPN-------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             P               +G+  +A +L + M+  G  P+ +  S+L
Sbjct: 943 SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL 989



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 25/186 (13%)

Query: 1    MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
             L K   L  A +L   +   GL PD +TYNT++ G+C  +  ++AV LFE +     +P
Sbjct: 1343 WLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEP 1402

Query: 61   NSITFTILIDAFCKEGRMDDATMMFSK-MLEKGPK----------------ANVVTYSCL 103
            ++ T+T L+     +    D     SK M++ G K                A+V     +
Sbjct: 1403 DNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAI 1462

Query: 104  IDGYFKSQNMKSAFDVYEEMCENNISPNIA--------GRPTEAMQLYDSMLRNGIMPDG 155
            +D + K  + + A  V+E M + N+    A         +  +A  L+  M   G+ PD 
Sbjct: 1463 VDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDA 1522

Query: 156  LLLSTL 161
            +   +L
Sbjct: 1523 VTFLSL 1528



 Score = 39.7 bits (91), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 9    DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNSITFTI 67
            + A  L+  +   G+EPD +T+ +++   C    LD AV  F  ++    L+P    F+ 
Sbjct: 1504 EQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSC 1563

Query: 68   LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +ID   + G +++A  +   ML    K +  T++CL+  Y    + + A  V E
Sbjct: 1564 VIDLLGRLGLVNEAEDL---MLGMPCKPSAATWNCLLSAYKICGDFERALRVAE 1614


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  L  ++T  G  P+I+TYNTII G+C L R+DEA  L E++     +PN
Sbjct: 265 LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 324

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+L+DAFCK G+ +DA  +   M+EKG   N+ TY+ L+D + K   ++ A  +  
Sbjct: 325 VVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLS 384

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +    PN+            A +  E + L + ML N  +PD +  +T+ D
Sbjct: 385 SMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIID 438



 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 102/187 (54%), Gaps = 13/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A++L  ++ D G  P++ +YNT++ G+C  NR++ A+ L E++      P+
Sbjct: 54  LSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPD 113

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++T +I+  CK  ++D+A  +  KM+++G + NV+TY  L+DG+ +  ++  A ++  
Sbjct: 114 VVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVR 173

Query: 122 EMCENNISPNI-----------AGRPTE-AMQLYDSMLRNG-IMPDGLLLSTLADYNLQS 168
           +M E    PN            +GR  + A+QL+  M  +G   PD    ST+ D  ++S
Sbjct: 174 KMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKS 233

Query: 169 SGSQEHC 175
               + C
Sbjct: 234 GKVDDAC 240



 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K    D A  L  ++T + G  PDIITYNT+I G C   R+D A +LF ++    L P
Sbjct: 475 LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAP 534

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T++I+I + CK   MD+A  +   ML+ G     +TY  LIDG+ K+ N+  A ++ 
Sbjct: 535 DDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEIL 594

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + +      P++             GR  +A +L ++MLR G++PD +  +TL
Sbjct: 595 QLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTL 647



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D A +L   +  +G  P+++TY++++ G C   +LDEA  L +++T     PN
Sbjct: 230 LVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPN 289

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID  CK GR+D+A  +  +M++ G + NVVTY+ L+D + K    + A  + E
Sbjct: 290 IVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVE 349

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M E    PN+                  A QL  SM++ G +P+ +  +T+
Sbjct: 350 VMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTV 401



 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           LD+AL+LF ++ + G   PD+ TY+TI+       ++D+A +L E +      PN +T++
Sbjct: 200 LDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYS 259

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+   CK G++D+AT +  +M   G   N+VTY+ +IDG+ K   +  A+ + EEM + 
Sbjct: 260 SLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG 319

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN+             G+  +A+ L + M+  G +P+    ++L D
Sbjct: 320 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD 368



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 13/174 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  K+  ++ A +L   +  +G  P++++YNT+I G C   ++ E V L E++      P
Sbjct: 369 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVP 428

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF  +IDA CK  R+D A  +F+ + E G   N+VTY+ L+ G  KS+    A  + 
Sbjct: 429 DIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLL 488

Query: 121 EEMC-ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EM  +   SP+I            + R   A +L+  ML +G+ PD +  S +
Sbjct: 489 REMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 542



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +   + L  Q+      PDI+T+NTII   C   R+D A +LF  +      PN
Sbjct: 405 LCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+  L+   CK  R D A  +  +M  K G   +++TY+ +IDG  KS+ +  A+ ++
Sbjct: 465 LVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLF 524

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +M  + ++P+                  EA  + + ML+NG  P  +   TL D
Sbjct: 525 LQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLID 579



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 70/143 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +   +   G +P  ITY T+I G+C    LD+A+++ + L      P+
Sbjct: 546 LCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD 605

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+I ID   K GR+  A  +   ML  G   + VTY+ L+ G+  +   + A D++E
Sbjct: 606 VVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFE 665

Query: 122 EMCENNISPNIAGRPTEAMQLYD 144
            M +    P+ A   T    L D
Sbjct: 666 VMRQCGCEPDNATYTTLVGHLVD 688



 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K   L  A +L   +   GL PD +TYNT++ G+C  +R ++AV LFE +     +P
Sbjct: 615 WLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEP 674

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSK-MLEKGPKAN 96
           ++ T+T L+     +    D     SK M++ G K N
Sbjct: 675 DNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLN 711


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A KLF ++ D G+ P  +TYN +I G C    LDEA++LF+ +     +P+
Sbjct: 195 LAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILIDA CK G+MD+A  +  +M + G   +VVTYS LI G      +  A  + E
Sbjct: 255 RFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M +    P +            AGR  EA ++ D+M+ +G  PD +  +TL   + ++ 
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 170 GSQE 173
            ++ 
Sbjct: 375 QTER 378



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +L  ++TD G  PD++TY+T+I G CS+ R+D+A  L E +   Q KP  +
Sbjct: 267 KRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV 326

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   LI   CK GR+ +A  +   M+  G   +VVTY+ L+ G+ ++   + A ++  +M
Sbjct: 327 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 386

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
               ++PN+            A R  EA  ++  M  +G  P+
Sbjct: 387 VARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 429



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL LF ++   G  P+  ++NTII G C  +++D+A Q+F ++    + P+
Sbjct: 125 LCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPD 184

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S ++ ILID   K G++++A  +F +ML+ G   + VTY+ +I G   +  +  A ++++
Sbjct: 185 SWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFK 244

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P     NI        G+  EA +L   M  +G +PD +  STL
Sbjct: 245 SMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTL 296



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 16/177 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  LF +L   G+ P  + Y ++I G C  N  D+A +LF  +      P+
Sbjct: 20  LAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPS 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ++IDA CK G +++A  +  KM+E G   +VVTY+ ++DG  KS  ++ A  ++ 
Sbjct: 80  PVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFN 139

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD----GLLLSTLA 162
           EM     +PN     T            +A Q++  M    I PD    G+L+  LA
Sbjct: 140 EMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLA 196



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++   +   G  PD++TYNT++ G+C   + + A +L   +    L PN
Sbjct: 335 LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L+   CK  R+ +A  +F++M   G   N+ TY+ LI G+  +  +     ++ 
Sbjct: 395 VVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG 454

Query: 122 EMCENNISPNIAGRPTEAMQLYDS 145
           EM    ISP+     T A +L  S
Sbjct: 455 EMVCAGISPDHVVYGTLAAELCKS 478



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+ A  L  ++ + G  PD++TYNT++ G C   R++EA+ LF ++  +   PN  
Sbjct: 92  KRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRR 151

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +   +I   C++ ++D A  +F +M  +    +  +Y  LIDG  K+  +  A+ ++  M
Sbjct: 152 SHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRM 211

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            ++ I+P+            +A    EA++L+ SM   G  P     + L D +
Sbjct: 212 LDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAH 265



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 12/149 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + +R + PD  +Y  +I G     +L++A  LF+KL    + P+++ +T LI   C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
            DDA  +F+ M  +G   + VTY+ +ID   K   ++ A D+ ++M E+   P++     
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPD 154
                  +GR  EA+ L++ M R G  P+
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPN 149



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L   +  RGL P+++TY  ++ G C  NRL EA  +F ++      PN  T+T L
Sbjct: 377 ERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTAL 436

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  FC  G++D    +F +M+  G   + V Y  L     KS     A ++  E  E+  
Sbjct: 437 ILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLR 496

Query: 129 SPNI--------------AGRPTEAMQLYDSMLRNGIMP 153
           S                 AG+   A+     M+R G +P
Sbjct: 497 SEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLP 535



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  +F Q+   G  P++ TY  +I G+CS  ++D  ++LF ++ C  + P+
Sbjct: 405 LCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLE--KGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            + +  L    CK GR   A  +  +  E  +        Y   +DG   +  M+ A   
Sbjct: 465 HVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGF 524

Query: 120 YEEMCENNISP 130
             +M      P
Sbjct: 525 VRDMVRGGQLP 535


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++PDI TY+++I G+C  +RLDEA  +FE +      PN
Sbjct: 340 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ FCK  R+D+   +F +M ++G   N VTY+ LI G+F++++  +A  V++
Sbjct: 400 VVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 459

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M  + + PNI             G+  +AM +++ + R+ + P      T+  YN+   
Sbjct: 460 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYNIMIE 513

Query: 170 G 170
           G
Sbjct: 514 G 514



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H D AL LF ++ ++G+ P++ITY+++I   C+  R  +A +L   +   ++ PN
Sbjct: 270 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPN 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LIDAF KEG++ +A  ++ +M+++    ++ TYS LI+G+     +  A  ++E
Sbjct: 330 VVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M   +  PN+            A R  E ++L+  M + G++ + +  +TL
Sbjct: 390 LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  RG +P+++TY  ++ G C    +D A  L  K+   +++ N + ++ +ID
Sbjct: 209 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVID 268

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK    DDA  +F++M  KG + NV+TYS LI      +    A  +  +M E  I+P
Sbjct: 269 SLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINP 328

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  EA +LYD M++  I PD    S+L +
Sbjct: 329 NVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 373



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 94/185 (50%), Gaps = 16/185 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   +  AL L G++   G EP I+T ++++ GYC   R+ +AV L +++  +  +P++I
Sbjct: 132 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI       +  +A  +  +M+++G + N+VTY  +++G  K  ++  AF++  +M
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 251

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQ 167
               I  N+    T            +A+ L+  M   G+ P+ +    L+S L +Y   
Sbjct: 252 EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERW 311

Query: 168 SSGSQ 172
           S  S+
Sbjct: 312 SDASR 316



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  L  ++    +E +++ Y+T+I   C     D+A+ LF ++    ++PN
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ LI   C   R  DA+ + S M+E+    NVVT++ LID + K   +  A  +Y+
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM + +I P+I              R  EA  +++ M+     P+ +  +TL +
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIN 408



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 73/123 (59%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  +F Q+   G+ P+I+TYNT++ G C   +L++A+ +FE L   +++P   T+ I+
Sbjct: 452 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 511

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG K +V+ Y+ +I G+ +    + A  ++ +M E+  
Sbjct: 512 IEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGP 571

Query: 129 SPN 131
            P+
Sbjct: 572 LPD 574



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  ++LF +++ RGL  + +TY T+I G+      D A  +F+++    + PN +
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D  CK G+++ A ++F  +     +  + TY+ +I+G  K+  ++  +D++  +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
               + P++             G   EA  L+  M  +G +PD
Sbjct: 532 SLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ LFG +      P I  +N ++     + + D  + L EK+  + +  N  T+ I
Sbjct: 66  LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNI 125

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC+  ++  A  +  KM++ G + ++VT S L++GY   + +  A  + ++M E  
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
             P+            +  + +EA+ L D M++ G  P+
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 224



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A+ +F  L    +EP I TYN +I G C   ++++   LF  L+   +KP+
Sbjct: 480 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPD 539

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
            I +  +I  FC++G  ++A  +F KM E GP
Sbjct: 540 VIIYNTMISGFCRKGLKEEADALFRKMREDGP 571



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 64/126 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  ++   G+  ++ TYN +I  +C  +++  A+ L  K+  +  +P+ +T + 
Sbjct: 101 FDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 160

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ +C   R+ DA  +  +M+E G + + +T++ LI G F       A  + + M +  
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220

Query: 128 ISPNIA 133
             PN+ 
Sbjct: 221 CQPNLV 226


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 97/168 (57%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ L+ ++   GL+P+I+T+N +I G+C    + EA +LF+ +    L PN+ITF  
Sbjct: 324 LDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +IDAFCK G M++   + + ML++G   NV TY+CLI G  ++QN+++A  +  EM    
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  ++             G P++A +L   ML  G+ P+ +  +TL D
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMD 491



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 91/154 (59%), Gaps = 6/154 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  ++ AA KL  ++ +  L+ D++TYN +I G+C      +A +L  ++  V +KPN
Sbjct: 423 LCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPN 482

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D +C EG +  A  + ++M ++G +ANVVTY+ LI G+ K+  ++ A  +  
Sbjct: 483 HVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLN 542

Query: 122 EMCENNISPNIAGRPT-EAMQLYDSMLRNGIMPD 154
           EM E  ++PN   R T + ++L   ML  G +PD
Sbjct: 543 EMLEKGLNPN---RTTYDVVRL--EMLEKGFIPD 571



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ IT+NT+I G+C    +  A   FE++    LKPN +T+  LI+     G++D+A  +
Sbjct: 271 PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIAL 330

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           + KM+  G K N+VT++ LI+G+ K + +K A  +++++ E ++ PN             
Sbjct: 331 WDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCK 390

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
           AG   E   L++SML  GI P+
Sbjct: 391 AGMMEEGFALHNSMLDEGIFPN 412



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++    L   + D G+ P++ TYN +I G C    +  A +L  ++   +LK + +
Sbjct: 390 KAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVV 449

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILI  +CK+G    A  +  +ML  G K N VTY+ L+DGY    N+K+A  V  +M
Sbjct: 450 TYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQM 509

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +     N+             G+  +A +L + ML  G+ P+
Sbjct: 510 EKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPN 552



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +    + +A ++F ++ D G +  + + N ++      N   E   +++++   +++PN 
Sbjct: 141 VTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNL 200

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK---SQNMKSAFDV 119
            TF I I+  CK G+++ A  +   +   G   N+VTY+ LIDG+ K   +  M  A  +
Sbjct: 201 TTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAI 260

Query: 120 YEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            +EM  N I PN       I G         A   ++ M R G+ P+ +  ++L +  L 
Sbjct: 261 LKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLIN-GLS 319

Query: 168 SSGSQEHCI 176
           ++G  +  I
Sbjct: 320 NNGKLDEAI 328



 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 20  DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79
           DR     +IT + ++  Y +   +  A ++F ++     K +  +   L+ A  K     
Sbjct: 124 DRPCANALIT-DMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETG 182

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------- 132
           +   ++ +M+++  + N+ T++  I+G  K+  +  A DV E++     SPNI       
Sbjct: 183 EMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLI 242

Query: 133 --------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   AG+   A  +   ML N I P+ +  +TL D
Sbjct: 243 DGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLID 281


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  AL L  ++    + PD+ TY+ +I G C ++R++EA  L +++      PN++
Sbjct: 345 KAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAV 404

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID +CKEG M+ A  + S+M EKG + N++T+S LIDGY K+  M++A  +Y EM
Sbjct: 405 TYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P++             G   EA +L+  M   G+ P+   LS L D
Sbjct: 465 VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLID 516



 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 100/166 (60%), Gaps = 5/166 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  L  ++  +G  P+ +TYNT+I GYC    +++A+++  ++T   ++PN ITF+
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G+M+ A  ++++M+ KG   +VV Y+ LIDG+FK  N K AF +++EM E 
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            + PN+         L D + ++G + D + L  LA     ++GS+
Sbjct: 503 GLHPNVFTLSC----LIDGLCKDGRISDAIKL-FLAKTGTDTTGSK 543



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A K    +   G+ P+I  YN +I GYC    L EA+ L  ++   ++ P+  T++ILI
Sbjct: 316 SARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C   RM++A  +  +M +KG   N VTY+ LIDGY K  NM+ A +V  +M E  I 
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE 435

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           PNI            AG+   AM LY  M+  G++PD +  + L D + +   ++E
Sbjct: 436 PNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A  +F  + + G+ P++ TYNT++ GYC +  + +A++L+ ++    L PN
Sbjct: 238 LCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPN 297

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ILID  CK   M  A      M   G   N+  Y+CLIDGY K+ N+  A  ++ 
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHS 357

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+ ++ I P++              R  EA  L   M + G +P+ +  +TL D
Sbjct: 358 EIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 75/132 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   D   K++G +  RG  P+++TY T+I G C      +A +LF+++   ++ P 
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +TILI   C E R+ +A  MF  M   G   N+ TY+ ++DGY K  ++K A ++Y 
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYX 287

Query: 122 EMCENNISPNIA 133
           EM  + + PN+ 
Sbjct: 288 EMLGDGLLPNVV 299



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 25/176 (14%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ A+++  Q+T++G+EP+IIT++T+I GYC   +++ A+ L+ ++    L P+ +
Sbjct: 415 KEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVV 474

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
            +T LID   K+G   +A  +  +M E G   NV T SCLIDG  K   +  A  ++   
Sbjct: 475 AYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAK 534

Query: 121 ----------EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
                      E+  +  SPN              GR  +A + +  M  +G+ PD
Sbjct: 535 TGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPD 590



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++ ++ + P ++ Y  +I G C  +R+ EA  +F  +    + PN  T+  ++D
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK   +  A  ++ +ML  G   NVVT+  LIDG  K+  M SA     +M    + P
Sbjct: 272 GYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI            AG  +EA+ L+  + ++ I+PD    S L
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +   +  +L      P++  +  +I  +  +  ++EA+ ++ K+  +   P      +++
Sbjct: 111 SVFNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVL 165

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D   K+GR D    ++  M+ +G   NVVTY  LIDG  +  +   AF +++EM E  I 
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF 225

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P +              R +EA  ++ +M  +G++P+    +T+ D
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL----- 58
           K+ +   A +L  ++ + GL P++ T + +I G C   R+ +A++LF   T         
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT 544

Query: 59  --------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
                    PN + +T LI   C +GR+  A+  FS M   G + +V T   +I G+F++
Sbjct: 545 NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRA 604

Query: 111 QNMKSAFDVYEEMCENNISPN 131
            +++    +  ++ +  I PN
Sbjct: 605 MHLRDVMMLQADILKMGIIPN 625



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P +   N ++ G     R D   +++  +      PN +T+  LID  C++G    A  +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
           F +M+EK     VV Y+ LI G      +  A  ++  M  + + PN+    T       
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 138 -----EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                +A++LY  ML +G++P+ +    L D
Sbjct: 276 IAHVKKALELYXEMLGDGLLPNVVTFGILID 306



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 17/142 (11%)

Query: 2   LIKECHLDAALKLFGQLT------------DRGL-EPDIITYNTIICGYCSLNRLDEAVQ 48
           L K+  +  A+KLF   T            DR L  P+ + Y  +I G C+  R+ +A +
Sbjct: 518 LCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASK 577

Query: 49  LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            F  + C  L+P+  T  ++I    +   + D  M+ + +L+ G   N   Y  L  GY 
Sbjct: 578 FFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYE 637

Query: 109 KSQNMKSAFDVYEEMCENNISP 130
           +S  +KSA       C   + P
Sbjct: 638 ESGYLKSAL----SFCGEGVQP 655



 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL+LF Q+     +PDI+T    +     L  LD    +   +    L  +      L
Sbjct: 731 NKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 790

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           I+ + K G +  A  +F    +   K +V T++ +I G+      + A  ++ EM E N
Sbjct: 791 INMYSKCGEIGTARRLF----DGTQKKDVTTWTSMIVGHALHGQAEEALQLFTEMKETN 845


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   + AA K F ++  R + PD++TY  II G+C +  + EA +LF ++ C  L+P+S+
Sbjct: 363 KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 422

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI+ +CK G M DA  + + M++ G   NVVTY+ LIDG  K  ++ SA ++  EM
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + PNI            +G   EA++L       G+  D +  +TL D
Sbjct: 483 WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD+A +L  ++   GL+P+I TYN+I+ G C    ++EAV+L  +     L  +
Sbjct: 466 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+T L+DA+CK G MD A  +  +ML KG +  +VT++ L++G+     ++    +  
Sbjct: 526 TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 585

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M    I+PN            I      A  +Y  M   G+ PDG     L   + ++ 
Sbjct: 586 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKAR 645

Query: 170 GSQE 173
             +E
Sbjct: 646 NMKE 649



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 13/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L + C L  A + F ++  +G+ PD + Y T+I G+C    +  A + F ++    + P
Sbjct: 325 LLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITP 384

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T +I  FC+ G M +A  +F +M  KG + + VT++ LI+GY K+ +MK AF V+
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             M +   SPN+    T             A +L   M + G+ P+    +++ +  L  
Sbjct: 445 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVN-GLCK 503

Query: 169 SGSQEHCI 176
           SG+ E  +
Sbjct: 504 SGNIEEAV 511



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 17/171 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IKE H    L L  +L  +G  PD+I+Y+T++ GYC    LD+  +L E +    LKPNS
Sbjct: 262 IKEAH---HLLLLMEL--KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS 316

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I   C+  ++ +A   FS+M+ +G   + V Y+ LIDG+ K  ++++A   + E
Sbjct: 317 YIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE 376

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M   +I+P++             G   EA +L+  M   G+ PD +  + L
Sbjct: 377 MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  H+  A ++   +   G  P+++TY T+I G C    LD A +L  ++  + L+PN  
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +++  CK G +++A  +  +    G  A+ VTY+ L+D Y KS  M  A ++ +EM
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
               + P I             G   +  +L + ML  GI P+    ++L 
Sbjct: 553 LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A ++  ++  +GL+P I+T+N ++ G+C    L++  +L   +    + PN+ 
Sbjct: 538 KSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 597

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  L+  +C    +  AT ++  M  +G   +  TY  L+ G+ K++NMK A+ +++EM
Sbjct: 598 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 657

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                S +++             +  EA +++D M R G+  D  +    +D
Sbjct: 658 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSD 709



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L AA  ++  +  RG+ PD  TY  ++ G+C    + EA  LF+++       +  T++
Sbjct: 611 NLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS 670

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI  F K  +  +A  +F +M  +G  A+   +    D  +K +   +  D  +E+ EN
Sbjct: 671 VLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 730


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
           thaliana]
          Length = 1184

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   + AA K F ++  R + PD++TY  II G+C +  + EA +LF ++ C  L+P+S+
Sbjct: 806 KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 865

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI+ +CK G M DA  + + M++ G   NVVTY+ LIDG  K  ++ SA ++  EM
Sbjct: 866 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 925

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + PNI            +G   EA++L       G+  D +  +TL D
Sbjct: 926 WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 977



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L KE  LD+A +L  ++   GL+P+I TYN+I+ G C    ++EAV+L  +     L  +
Sbjct: 909  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 968

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++T+T L+DA+CK G MD A  +  +ML KG +  +VT++ L++G+     ++    +  
Sbjct: 969  TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1028

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
             M    I+PN            I      A  +Y  M   G+ PDG
Sbjct: 1029 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDG 1074



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 13/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L + C L  A + F ++  +G+ PD + Y T+I G+C    +  A + F ++    + P
Sbjct: 768 LLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITP 827

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T +I  FC+ G M +A  +F +M  KG + + VT++ LI+GY K+ +MK AF V+
Sbjct: 828 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 887

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             M +   SPN+    T             A +L   M + G+ P+    +++ +  L  
Sbjct: 888 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVN-GLCK 946

Query: 169 SGSQEHCI 176
           SG+ E  +
Sbjct: 947 SGNIEEAV 954



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 17/171 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IKE H    L L  +L  +G  PD+I+Y+T++ GYC    LD+  +L E +    LKPNS
Sbjct: 705 IKEAH---HLLLLMEL--KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS 759

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I   C+  ++ +A   FS+M+ +G   + V Y+ LIDG+ K  ++++A   + E
Sbjct: 760 YIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE 819

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M   +I+P++             G   EA +L+  M   G+ PD +  + L
Sbjct: 820 MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 870



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K  H+  A ++   +   G  P+++TY T+I G C    LD A +L  ++  + L+PN  
Sbjct: 876  KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 935

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+  +++  CK G +++A  +  +    G  A+ VTY+ L+D Y KS  M  A ++ +EM
Sbjct: 936  TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 995

Query: 124  CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
                + P I             G   +  +L + ML  GI P+    ++L 
Sbjct: 996  LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 1046



 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   +D A ++  ++  +GL+P I+T+N ++ G+C    L++  +L   +    + PN+ 
Sbjct: 981  KSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 1040

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            TF  L+  +C    +  AT ++  M  +G   +  TY  L+ G+ K++NMK A+ +++EM
Sbjct: 1041 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 1100

Query: 124  CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 S +++             +  EA +++D M R G+  D  +    +D
Sbjct: 1101 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSD 1152



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +L AA  ++  +  RG+ PD  TY  ++ G+C    + EA  LF+++       +  T++
Sbjct: 1054 NLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS 1113

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +LI  F K  +  +A  +F +M  +G  A+   +    D  +K +   +  D  +E+ EN
Sbjct: 1114 VLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 1173


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F+ +      PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI+ +CK GR+DD   +F +M  +G  AN +TY  LI G+ K  N+  A D+++
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 641 EMISSGVYPD 650



 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  GL PD++T+ T++ G C  +R+ EA+  F ++     +PN +TFT 
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTT 189

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G +   +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR ++A  L+  M   GI PD
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 13/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA   LF ++ ++G+ PD+ TYN++I G+CS  R  +A QL +++   ++ P+ +T+ 
Sbjct: 271 HSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+AF KEG+  +A  ++ +ML +G   N +TYS +IDG+ K   + +A  ++  M   
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             SPN+            A R  + M+L   M   G++ D    +TL
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P+ ITY+++I G+C  NRLD A  +F  +      PN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  LID +C   R+DD   +  +M E G  A+  TY+ LI G++   ++ +A D+ +
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM  + + P+I    T    L D +  NG + D L
Sbjct: 455 EMISSGLCPDIVTCDT----LLDGLCDNGKLKDAL 485



 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +I G  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    NVVT++ LI+GY K+  +    +++ EM    I  N          
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + +  +
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNM 657



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 48/207 (23%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL  F Q+ +    P+++T+ T++ G C   R+ EAV L +++    L+P  IT
Sbjct: 162 EDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 65  ------------------------------------FTILIDAFCKEGRMDDATMMFSKM 88
                                               ++ +ID+ CK+GR  DA  +F++M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
            EKG   ++ TY+ +I G+  S     A  + +EM E  ISP++             G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA +LYD ML  GI+P+ +  S++ D
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMID 368



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  P++IT+NT+I GYC   R+D+ ++L  ++T   L  ++ 
Sbjct: 372 KQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTT 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  F   G ++ A  +  +M+  G   ++VT   L+DG   +  +K A ++++ M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM 491

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 492 QKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 161 LAD 163
           + D
Sbjct: 552 MID 554



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 23/155 (14%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + L+ ++  + +  DI ++N +I  +CS ++L  A+  F K+T + L P+ +TFT L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL 155

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C E R+ +A   F +M E   + NVVT++ L++G                +C    
Sbjct: 156 LHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNG----------------LCRE-- 197

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                GR  EA+ L D M+ +G+ P  +   T+ D
Sbjct: 198 -----GRIVEAVALLDRMMEDGLQPTQITYGTIVD 227



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+ T+I GYC   R+D+ ++LF ++    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ A  +F +M+  G   + +T   ++ G +  + +K A  + E
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675

Query: 122 EM 123
           ++
Sbjct: 676 KL 677



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ Y+ II   C   R  +A  LF ++    + P+  T+  +I  FC  GR  DA  +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG--- 134
             +MLE+    +VVTY+ LI+ + K      A ++Y+EM    I PN       I G   
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 --RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             R   A  ++  M   G  P+ +  +TL D
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLID 403


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F+ +      PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI+ +CK GR+DD   +F +M  +G  AN +TY  LI G+ K  N+  A D+++
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 641 EMISSGVYPD 650



 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG+LT  GL PD++T+NT++ G C  +R+ EA+ LF ++     +PN +TFT 
Sbjct: 130 LPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G +   +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR ++A  L+  M   GI PD
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 13/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA   LF ++ ++G+ PD+ TYN++I G+CS  R  +A QL +++   ++ P+ +T+ 
Sbjct: 271 HSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+AF KEG+  +A  ++ +ML +G   N +TYS +IDG+ K   + +A  ++  M   
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             SPN+            A R  + M+L   M   G++ D    +TL
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P+ ITY+++I G+C  NRLD A  +F  +      PN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  LID +C   R+DD   +  +M E G  A+  TY+ LI G++   ++ +A D+ +
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM  + + P+I    T    L D +  NG + D L
Sbjct: 455 EMISSGLCPDIVTCDT----LLDGLCDNGKLKDAL 485



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +I G  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    NVVT++ LI+GY K+  +    +++ EM    I  N          
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + +  +
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNM 657



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 48/207 (23%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF Q+ +    P+++T+ T++ G C   R+ EAV L +++    L+P  IT
Sbjct: 162 EDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 65  ------------------------------------FTILIDAFCKEGRMDDATMMFSKM 88
                                               ++ +ID+ CK+GR  DA  +F++M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
            EKG   ++ TY+ +I G+  S     A  + +EM E  ISP++             G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA +LYD ML  GI+P+ +  S++ D
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMID 368



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  P++IT+NT+I GYC   R+D+ ++L  ++T   L  ++ 
Sbjct: 372 KQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTT 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  F   G ++ A  +  +M+  G   ++VT   L+DG   +  +K A ++++ M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM 491

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 492 QKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 161 LAD 163
           + D
Sbjct: 552 MID 554



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 23/155 (14%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + L+ ++  + +  DI ++  +I  +CS ++L  A+  F KLT + L P+ +TF  L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTL 155

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C E R+ +A  +F +M E   + NVVT++ L++G                +C    
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNG----------------LCRE-- 197

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                GR  EA+ L D M+ +G+ P  +   T+ D
Sbjct: 198 -----GRIVEAVALLDRMMEDGLQPTQITYGTIVD 227



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+ T+I GYC   R+D+ ++LF ++    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ A  +F +M+  G   + +T   ++ G +  + +K A  + E
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675

Query: 122 EM 123
           ++
Sbjct: 676 KL 677



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ Y+ II   C   R  +A  LF ++    + P+  T+  +I  FC  GR  DA  +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG--- 134
             +MLE+    +VVTY+ LI+ + K      A ++Y+EM    I PN       I G   
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 --RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             R   A  ++  M   G  P+ +  +TL D
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLID 403


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F+ +      PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI+ +CK GR+DD   +F +M  +G  AN +TY  LI G+ K  N+  A D+++
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 641 EMISSGVYPD 650



 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  GL PD++T+NT++ G C  +R+ EA+ LF ++     +PN +TFT 
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G +   +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR ++A  L+  M   GI PD
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 13/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA   LF ++ ++G+ PD+ TYN++I G+CS  R  +A QL +++   ++ P+ +T+ 
Sbjct: 271 HSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+AF KEG+  +A  ++ +ML +G   N +TYS +IDG+ K   + +A  ++  M   
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             SPN+            A R  + M+L   M   G++ D    +TL
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P+ ITY+++I G+C  NRLD A  +F  +      PN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  LID +C   R+DD   +  +M E G  A+  TY+ LI G++   ++ +A D+ +
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM  + + P+I    T    L D +  NG + D L
Sbjct: 455 EMISSGLCPDIVTCDT----LLDGLCDNGKLKDAL 485



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +I G  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    NVVT++ LI+GY K+  +    +++ EM    I  N          
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + +  +
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNM 657



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 48/207 (23%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF Q+ +    P+++T+ T++ G C   R+ EAV L +++    L+P  IT
Sbjct: 162 EDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 65  ------------------------------------FTILIDAFCKEGRMDDATMMFSKM 88
                                               ++ +ID+ CK+GR  DA  +F++M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
            EKG   ++ TY+ +I G+  S     A  + +EM E  ISP++             G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA +LYD ML  GI+P+ +  S++ D
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMID 368



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  P++IT+NT+I GYC   R+D+ ++L  ++T   L  ++ 
Sbjct: 372 KQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTT 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  F   G ++ A  +  +M+  G   ++VT   L+DG   +  +K A ++++ M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM 491

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 492 QKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 161 LAD 163
           + D
Sbjct: 552 MID 554



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+ T+I GYC   R+D+ ++LF ++    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ A  +F +M+  G   + +T   ++ G +  + +K A  + E
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675

Query: 122 EM 123
           ++
Sbjct: 676 KL 677



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 23/155 (14%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + L+ ++  + +  DI ++  +I  +CS ++L  A+  F K+T + L P+ +TF  L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 155

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C E R+ +A  +F +M E   + NVVT++ L++G                +C    
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNG----------------LCRE-- 197

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                GR  EA+ L D M+ +G+ P  +   T+ D
Sbjct: 198 -----GRIVEAVALLDRMMEDGLQPTQITYGTIVD 227



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ Y+ II   C   R  +A  LF ++    + P+  T+  +I  FC  GR  DA  +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG--- 134
             +MLE+    +VVTY+ LI+ + K      A ++Y+EM    I PN       I G   
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 --RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             R   A  ++  M   G  P+ +  +TL D
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLID 403


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F+ +      PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI+ +CK GR+DD   +F +M  +G  AN +TY  LI G+ K  N+  A D+++
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 641 EMISSGVYPD 650



 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  GL PD++T+NT++ G C  +R+ EA+ LF ++     +PN +TFT 
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G +   +TY  ++DG  K  +  SA D+  +M E +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEIS 249

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR ++A  L+  M   GI PD
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 13/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA   LF ++ ++G+ PD+ TYN++I G+CS  R  +A QL +++   ++ P+ +T+ 
Sbjct: 271 HSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+AF KEG+  +A  ++ +ML +G   N +TYS +IDG+ K   + +A  ++  M   
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             SPN+            A R  + M+L   M   G++ D    +TL
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P+ ITY+++I G+C  NRLD A  +F  +      PN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  LID +C   R+DD   +  +M E G  A+  TY+ LI G++   ++ +A D+ +
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM  + + P+I    T    L D +  NG + D L
Sbjct: 455 EMISSGLCPDIVTCDT----LLDGLCDNGKLKDAL 485



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +I G  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    NVVT++ LI+GY K+  +    +++ EM    I  N          
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + +  +
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNM 657



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 48/207 (23%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF Q+ +    P+++T+ T++ G C   R+ EAV L +++    L+P  IT
Sbjct: 162 EDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 65  ------------------------------------FTILIDAFCKEGRMDDATMMFSKM 88
                                               ++ +ID+ CK+GR  DA  +F++M
Sbjct: 222 YGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
            EKG   ++ TY+ +I G+  S     A  + +EM E  ISP++             G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA +LYD ML  GI+P+ +  S++ D
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMID 368



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  P++IT+NT+I GYC   R+D+ ++L  ++T   L  ++ 
Sbjct: 372 KQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTT 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  F   G ++ A  +  +M+  G   ++VT   L+DG   +  +K A ++++ M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM 491

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 492 QKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 161 LAD 163
           + D
Sbjct: 552 MID 554



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+ T+I GYC   R+D+ ++LF ++    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ A  +F +M+  G   + +T   ++ G +  + +K A  + E
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675

Query: 122 EM 123
           ++
Sbjct: 676 KL 677



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 23/155 (14%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + L+ ++  + +  DI ++  +I  +CS ++L  A+  F K+T + L P+ +TF  L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 155

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C E R+ +A  +F +M E   + NVVT++ L++G                +C    
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNG----------------LCRE-- 197

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                GR  EA+ L D M+ +G+ P  +   T+ D
Sbjct: 198 -----GRIVEAVALLDRMMEDGLQPTQITYGTIVD 227



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ Y+ II   C   R  +A  LF ++    + P+  T+  +I  FC  GR  DA  +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG--- 134
             +MLE+    +VVTY+ LI+ + K      A ++Y+EM    I PN       I G   
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 --RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             R   A  ++  M   G  P+ +  +TL D
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLID 403


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F+ +      PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI+ +CK GR+DD   +F +M  +G  AN +TY  LI G+ K  N+  A D+++
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 641 EMISSGVYPD 650



 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  GL PD++T+ T++ G C  +R+ EA+ LF ++     +PN +TFT 
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G +   +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR ++A  L+  M   GI PD
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 13/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA   LF ++ ++G+ PD+ TYN++I G+CS  R  +A QL +++   ++ P+ +T+ 
Sbjct: 271 HSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+AF KEG+  +A  ++ +ML +G   N +TYS +IDG+ K   + +A  ++  M   
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             SPN+            A R  + M+L   M   G++ D    +TL
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P+ ITY+++I G+C  NRLD A  +F  +      PN
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  LID +C   R+DD   +  +M E G  A+  TY+ LI G++   ++ +A D+ +
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM  + + P+I    T    L D +  NG + D L
Sbjct: 455 EMISSGLCPDIVTCDT----LLDGLCDNGKLKDAL 485



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +I G  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 506 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    NVVT++ LI+GY K+  +    +++ EM    I  N          
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + +  +
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNM 657



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 48/207 (23%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF Q+ +    P+++T+ T++ G C   R+ EAV L +++    L+P  IT
Sbjct: 162 EDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 65  ------------------------------------FTILIDAFCKEGRMDDATMMFSKM 88
                                               ++ +ID+ CK+GR  DA  +F++M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
            EKG   ++ TY+ +I G+  S     A  + +EM E  ISP++             G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA +LYD ML  GI+P+ +  S++ D
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMID 368



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  P++IT+NT+I GYC   R+D+ ++L  ++T   L  ++ 
Sbjct: 372 KQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTT 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  F   G ++ A  +  +M+  G   ++VT   L+DG   +  +K A ++++ M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM 491

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 492 QKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 161 LAD 163
           + D
Sbjct: 552 MID 554



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 23/155 (14%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + L+ ++  + +  DI ++N +I  +CS ++L  A+  F K+T + L P+ +TFT L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL 155

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C E R+ +A  +F +M E   + NVVT++ L++G                +C    
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNG----------------LCRE-- 197

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                GR  EA+ L D M+ +G+ P  +   T+ D
Sbjct: 198 -----GRIVEAVALLDRMMEDGLQPTQITYGTIVD 227



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+ T+I GYC   R+D+ ++LF ++    +  N
Sbjct: 556 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ A  +F +M+  G   + +T   ++ G +  + +K A  + E
Sbjct: 616 AITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675

Query: 122 EM 123
           ++
Sbjct: 676 KL 677



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ Y+ II   C   R  +A  LF ++    + P+  T+  +I  FC  GR  DA  +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG--- 134
             +MLE+    +VVTY+ LI+ + K      A ++Y+EM    I PN       I G   
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 --RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             R   A  ++  M   G  P+ +  +TL D
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLID 403


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  AL L  ++    + PD+ TY+ +I G C ++R++EA  L +++      PN++
Sbjct: 345 KAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAV 404

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID +CKEG M+ A  + S+M EKG + N++T+S LIDGY K+  M++A  +Y EM
Sbjct: 405 TYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P++             G   EA +L+  M   G+ P+   LS L D
Sbjct: 465 VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLID 516



 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 100/166 (60%), Gaps = 5/166 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  L  ++  +G  P+ +TYNT+I GYC    +++A+++  ++T   ++PN ITF+
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G+M+ A  ++++M+ KG   +VV Y+ LIDG+FK  N K AF +++EM E 
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            + PN+         L D + ++G + D + L  LA     ++GS+
Sbjct: 503 GLHPNVFTLSC----LIDGLCKDGRISDAIKL-FLAKTGTDTTGSK 543



 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + +A K    +   G+ P+I  YN +I GYC    L EA+ L  ++   ++ P+
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPD 367

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ILI   C   RM++A  +  +M +KG   N VTY+ LIDGY K  NM+ A +V  
Sbjct: 368 VFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCS 427

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E  I PNI            AG+   AM LY  M+  G++PD +  + L D + +  
Sbjct: 428 QMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487

Query: 170 GSQE 173
            ++E
Sbjct: 488 NTKE 491



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A  +F  + + G+ P++ TYNT++ GYC +  + +A++L++++    L PN
Sbjct: 238 LCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPN 297

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ILID  CK   M  A      M   G   N+  Y+CLIDGY K+ N+  A  ++ 
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHS 357

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+ ++ I P++              R  EA  L   M + G +P+ +  +TL D
Sbjct: 358 EIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 76/132 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   D   K++G +  RG  P+++TY T+I G C      +A +LF+++   ++ P 
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +TILI   C E R+ +A  MF  M   G   N+ TY+ ++DGY K  ++K A ++Y+
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQ 287

Query: 122 EMCENNISPNIA 133
           EM  + + PN+ 
Sbjct: 288 EMLGDGLLPNVV 299



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 72/117 (61%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ A+++  Q+T++G+EP+IIT++T+I GYC   +++ A+ L+ ++    L P+ +
Sbjct: 415 KEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVV 474

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T LID   K+G   +A  +  +M E G   NV T SCLIDG  K   +  A  ++
Sbjct: 475 AYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++ ++ + P ++ Y  +I G C  +R+ EA  +F  +    + PN  T+  ++D
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK   +  A  ++ +ML  G   NVVT+  LIDG  K+  M SA     +M    + P
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI            AG  +EA+ L+  + ++ I+PD    S L
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +   +  +L      P++  +  +I  +  +  ++EA+ ++ K+  +   P      +++
Sbjct: 111 SVFNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVL 165

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D   K+GR D    ++  M+ +G   NVVTY  LIDG  +  +   AF +++EM E  I 
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF 225

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P +              R +EA  ++ +M  +G++P+    +T+ D
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P +   N ++ G     R D   +++  +      PN +T+  LID  C++G    A  +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
           F +M+EK     VV Y+ LI G      +  A  ++  M  + + PN+    T       
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 138 -----EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                +A++LY  ML +G++P+ +    L D
Sbjct: 276 IAHVKKALELYQEMLGDGLLPNVVTFGILID 306


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 98/179 (54%), Gaps = 12/179 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A  LF ++  +G + DIITYNT+I G+C+  R D+  +L   +   ++ PN
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF++LID+F KEG++ +A  +  +M+++G   N +TY+ LIDG+ K   ++ A  + +
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVD 392

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            M      P+I            A R  + ++L+  M   G++ + +  +TL     QS
Sbjct: 393 LMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQS 451



 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A +L  ++  RG+ P+ ITYN++I G+C  NRL+EA+Q+ + +      P+
Sbjct: 343 FVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPD 402

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ILI+ +CK  R+DD   +F +M  +G  AN VTY+ L+ G+ +S  ++ A  +++
Sbjct: 403 IMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQ 462

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM    + P+I         L D +  NG +   L
Sbjct: 463 EMVSRRVRPDIVSYKI----LLDGLCDNGELEKAL 493



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L  ++ +R ++ D + Y+ II G C    LD A  LF ++     K + IT+  LI 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC  GR DD   +   M+++    NVVT+S LID + K   ++ A  + +EM +  I+P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N       I G     R  EA+Q+ D M+  G  PD +  + L
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNIL 409



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 47/206 (22%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           EC +  AL+L  ++ + G +P +IT NT++ G C   ++ +AV L +++     +PN +T
Sbjct: 171 ECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVT 230

Query: 65  -----------------------------------FTILIDAFCKEGRMDDATMMFSKML 89
                                              ++I+ID  CK+G +D+A  +F++M 
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 290

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
            KG KA+++TY+ LI G+  +        +  +M +  ISPN+             G+  
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EA QL   M++ GI P+ +  ++L D
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLID 376



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 82/130 (63%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A+++   +  +G +PDI+T+N +I GYC  NR+D+ ++LF +++   +  N++
Sbjct: 380 KENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTV 439

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+  FC+ G+++ A  +F +M+ +  + ++V+Y  L+DG   +  ++ A +++ ++
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499

Query: 124 CENNISPNIA 133
            ++ +  +I 
Sbjct: 500 EKSKMELDIG 509



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 47/214 (21%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A    G++   G EPD + +NT++ G C   R+ EA++L +++  +  KP  IT  
Sbjct: 138 KLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLN 197

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT--------------------------- 99
            L++  C  G++ DA ++  +M+E G + N VT                           
Sbjct: 198 TLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER 257

Query: 100 --------YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
                   YS +IDG  K  ++ +AF+++ EM       +I            AGR  + 
Sbjct: 258 NIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDG 317

Query: 140 MQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            +L   M++  I P+ +  S L D  ++    +E
Sbjct: 318 AKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 70/127 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ AL++FG++    +E DI  Y  II G C+ +++D+A  LF  L    +K ++  + 
Sbjct: 488 ELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYN 547

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I   C++  +  A ++F KM E+G   + +TY+ LI  +    +  +A ++ EEM  +
Sbjct: 548 IMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSS 607

Query: 127 NISPNIA 133
               +++
Sbjct: 608 GFPADVS 614



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 67/125 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A KLF ++  R + PDI++Y  ++ G C    L++A+++F K+   +++ +   + 
Sbjct: 453 KLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYM 512

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I   C   ++DDA  +F  +  KG K +   Y+ +I    +  ++  A  ++ +M E 
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEE 572

Query: 127 NISPN 131
             +P+
Sbjct: 573 GHAPD 577



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K    +  L L  Q+  +G+   I T + +I  +C   +L  A     K+  +  +P+
Sbjct: 98  IAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPD 157

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ F  L++  C E R+ +A  +  +M+E G K  ++T + L++G   +  +  A  + +
Sbjct: 158 TVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLID 217

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E    PN             +G+   AM+L   M    I  D +  S + D
Sbjct: 218 RMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271



 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  LF  L  +G++ D   YN +I   C  + L +A  LF K+T     P+ +T+ 
Sbjct: 523 KVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYN 582

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           ILI A   +     A  +  +M   G  A+V T   +I+     +  KS  D+
Sbjct: 583 ILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDM 635


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  AL L  ++    + PD+ TY+ +I G C ++R++EA  L +++      PN++
Sbjct: 345 KAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAV 404

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID +CKEG M+ A  + S+M EKG + N++T+S LIDGY K+  M++A  +Y EM
Sbjct: 405 TYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P++             G   EA +L+  M   G+ P+   LS L D
Sbjct: 465 VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLID 516



 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 100/166 (60%), Gaps = 5/166 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  L  ++  +G  P+ +TYNT+I GYC    +++A+++  ++T   ++PN ITF+
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G+M+ A  ++++M+ KG   +VV Y+ LIDG+FK  N K AF +++EM E 
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA 502

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            + PN+         L D + ++G + D + L  LA     ++GS+
Sbjct: 503 GLHPNVFTLSC----LIDGLCKDGRISDAIKL-FLAKTGTDTTGSK 543



 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + +A K    +   G+ P+I  YN +I GYC    L EA+ L  ++   ++ P+
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPD 367

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ILI   C   RM++A  +  +M +KG   N VTY+ LIDGY K  NM+ A +V  
Sbjct: 368 VFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCS 427

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E  I PNI            AG+   AM LY  M+  G++PD +  + L D + +  
Sbjct: 428 QMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487

Query: 170 GSQE 173
            ++E
Sbjct: 488 NTKE 491



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A  +F  + + G+ P++ TYNT++ GYC +  + +A++L++++    L PN
Sbjct: 238 LCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPN 297

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ILID  CK   M  A      M   G   N+  Y+CLIDGY K+ N+  A  ++ 
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHS 357

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+ ++ I P++              R  EA  L   M + G +P+ +  +TL D
Sbjct: 358 EIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 76/132 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   D   K++G +  RG  P+++TY T+I G C      +A +LF+++   ++ P 
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +TILI   C E R+ +A  MF  M   G   N+ TY+ ++DGY K  ++K A ++Y+
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQ 287

Query: 122 EMCENNISPNIA 133
           EM  + + PN+ 
Sbjct: 288 EMLGDGLLPNVV 299



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 25/176 (14%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ A+++  Q+T++G+EP+IIT++T+I GYC   +++ A+ L+ ++    L P+ +
Sbjct: 415 KEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVV 474

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
            +T LID   K+G   +A  +  +M E G   NV T SCLIDG  K   +  A  ++   
Sbjct: 475 AYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAK 534

Query: 121 ----------EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
                      E+  +  SPN              GR  +A + +  M  +G+ PD
Sbjct: 535 TGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPD 590



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++ ++ + P ++ Y  +I G C  +R+ EA  +F  +    + PN  T+  ++D
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK   +  A  ++ +ML  G   NVVT+  LIDG  K+  M SA     +M    + P
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI            AG  +EA+ L+  + ++ I+PD    S L
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSIL 374



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +   +  +L      P++  +  +I  +  +  ++EA+ ++ K+  +   P      +++
Sbjct: 111 SVFNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVL 165

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D   K+GR D    ++  M+ +G   NVVTY  LIDG  +  +   AF +++EM E  I 
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF 225

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P +              R +EA  ++ +M  +G++P+    +T+ D
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 13/141 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL----- 58
           K+ +   A +L  ++ + GL P++ T + +I G C   R+ +A++LF   T         
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKT 544

Query: 59  --------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
                    PN + +T LI   C +GR+  A+  FS M   G + +V T   +I G+F++
Sbjct: 545 NELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRA 604

Query: 111 QNMKSAFDVYEEMCENNISPN 131
            +++    +  ++ +  I PN
Sbjct: 605 MHLRDVMMLQADILKMGIIPN 625



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P +   N ++ G     R D   +++  +      PN +T+  LID  C++G    A  +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
           F +M+EK     VV Y+ LI G      +  A  ++  M  + + PN+    T       
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 138 -----EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                +A++LY  ML +G++P+ +    L D
Sbjct: 276 IAHVKKALELYQEMLGDGLLPNVVTFGILID 306



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 13/135 (9%)

Query: 2   LIKECHLDAALKLFGQLT------------DRGL-EPDIITYNTIICGYCSLNRLDEAVQ 48
           L K+  +  A+KLF   T            DR L  P+ + Y  +I G C+  R+ +A +
Sbjct: 518 LCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASK 577

Query: 49  LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            F  + C  L+P+  T  ++I    +   + D  M+ + +L+ G   N   Y  L  GY 
Sbjct: 578 FFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYE 637

Query: 109 KSQNMKSAFDVYEEM 123
           +S  +KSA    E++
Sbjct: 638 ESGYLKSALRCSEDL 652


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 79/130 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RGL PD ITYN++I G C  +RLDEA Q+F+ +      P+
Sbjct: 514 LINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPD 573

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI+ +CK GR+ D   +F +M  +G  AN +TY  LI G+ +  N+  A D+++
Sbjct: 574 VVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQ 633

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 634 EMISSGVYPD 643



 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L +E  +  A+ L  ++ + GL+P+ ITY TI+ G C +     A+ L  K+  V ++KP
Sbjct: 187 LCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKP 246

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + ++ +ID   K+GR  DA  +FS+M EKG   N+ TY+C+I+G+  S     A  + 
Sbjct: 247 NVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLL 306

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EM E  +SP++             G+  EA +LY+ ML  GI+P+ +  +++ D
Sbjct: 307 REMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMID 361



 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE     A +L+ ++  RG+ P+ ITYN++I G+   NRLD A ++F  +      P+
Sbjct: 328 LVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPD 387

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF+ILID +C   R+DD   +  +M  +G  AN +TY+ LI G+ +  N+ +A D+ +
Sbjct: 388 VITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQ 447

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM  + + PN+    T    L D +  NG + D L
Sbjct: 448 EMISSGVCPNVVTCNT----LLDGLCNNGKLKDAL 478



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 17/160 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  G  P ++T++T++ G C  +R+ EA+  F ++     KPN I FT 
Sbjct: 127 LPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQIC----KPNVIAFTT 182

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G + N +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 183 LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 242

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            I PN+             GR T+A  L+  M   GI P+
Sbjct: 243 RIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPN 282



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A  LF ++ ++G+ P++ TYN +I G+CS  R  EA +L  ++   ++ P+
Sbjct: 258 LWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPD 317

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF++LI+A  KEG+  +A  ++++ML +G   N +TY+ +IDG+ K   + +A  ++ 
Sbjct: 318 VVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFY 377

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP++            A R  + M+L   M R G++ + +  +TL
Sbjct: 378 LMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTL 429



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 100/183 (54%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA ++F  +  +G  PD+IT++ +I GYC   R+D+ ++L  +++   L  N+I
Sbjct: 365 KQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTI 424

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI  FC+ G ++ A  +  +M+  G   NVVT + L+DG   +  +K A ++++ M
Sbjct: 425 TYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVM 484

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N++ P++             G+ +EA +LY+ M   G++PD +  ++
Sbjct: 485 QKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNS 544

Query: 161 LAD 163
           + D
Sbjct: 545 VID 547



 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 12/151 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           +EPD+ TYN +ICG  +  +  EA +L+E++    L P++IT+  +ID  CK+ R+D+AT
Sbjct: 500 VEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEAT 559

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            MF  M  KG   +VVT++ LI+GY K   +    +V+ EM    I  N           
Sbjct: 560 QMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGF 619

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              G    A+ ++  M+ +G+ PD + +  +
Sbjct: 620 CQVGNINGALDIFQEMISSGVYPDTITIRNM 650



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 66/115 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +G  PD++T+ T+I GYC + R+ + +++F ++    +  N
Sbjct: 549 LCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVAN 608

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           +IT+  LI  FC+ G ++ A  +F +M+  G   + +T   ++ G +  + +K A
Sbjct: 609 AITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           ++P+++ Y+ II G     R  +A  LF ++    + PN  T+  +I+ FC  GR  +A 
Sbjct: 244 IKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQ 303

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +  +M E+    +VVT+S LI+   K      A ++Y EM    I PN           
Sbjct: 304 RLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGF 363

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               R   A +++  M   G  PD +  S L D
Sbjct: 364 SKQNRLDAAERMFYLMATKGCSPDVITFSILID 396



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ LFG +      P +I +  ++     + R D  + L  K+   ++  N  +FTI
Sbjct: 57  LDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTI 116

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC   ++  A   F K+ + G   ++VT+S L+ G      +  A   + ++C+ N
Sbjct: 117 LIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPN 176

Query: 128 ISPNIA--------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             GR  EA+ L D M+ +G+ P+ +   T+ D
Sbjct: 177 VIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 220


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 95/201 (47%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALK+   +   G+E DI TYNT+ CG C +NRLDEA  L   +  + + PN +T+T 
Sbjct: 159 VDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTT 218

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------------ 115
           LI   CK+G M +A  +F +M EKG   +VVTY+ +I GY K  +++             
Sbjct: 219 LISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKG 278

Query: 116 -----------------------AFDVYEEMCENNISPNIA------------GRPTEAM 140
                                  A  ++EEM +    PN+             GR   A 
Sbjct: 279 FVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAF 338

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           QLYD ML+ G++PD  L S L
Sbjct: 339 QLYDDMLKAGLIPDDSLYSAL 359



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 18/170 (10%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+  +    G+EP+  TY  +I G+C + +++ A  L   +    +  N I F  +ID +
Sbjct: 94  KVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGY 153

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C++G +DDA  + + M + G + ++ TY+ L  G  +   +  A  +   M E  + PN 
Sbjct: 154 CRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNY 213

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
                        G   EA +L+  M   G  P      ++  YN+   G
Sbjct: 214 VTYTTLISIHCKDGDMVEARRLFREMAEKGATP------SVVTYNVMIHG 257



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A +   ++  +G  PD+ TY +++ G+C   ++D A++LFE++     +PN +
Sbjct: 260 KKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVV 319

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            +T LI    KEGR + A  ++  ML+ G   +   YS L+ G   + N K
Sbjct: 320 AYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV-GSLHTDNRK 369



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALKLF ++  RG EP+++ Y  +I G     R + A QL++ +    L P+   ++ 
Sbjct: 299 VDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSA 358

Query: 68  LIDAFCKEGRMD 79
           L+ +   + R D
Sbjct: 359 LVGSLHTDNRKD 370



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 60  PNSIT---FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           P S++    ++++D  CK GR+DDA  +   M   G   N + Y+ L+D Y + ++    
Sbjct: 9   PGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRV 68

Query: 117 FDVYE----EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
            ++ E    E  E  +     G P + +   D  + NG+ P+
Sbjct: 69  QEILEIMENEGIEATVGDGTCGGPPKVL---DECVGNGVEPN 107


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A   + ++  RG+ PD+ITY+T+ICG+C   +L  A  L  ++T   + P+
Sbjct: 282 LCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPD 341

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILIDA CKEG++ +A  +   M ++G K NVVTYS L+DGY     + +A  ++ 
Sbjct: 342 VYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFH 401

Query: 122 EMCENNISPNI-----------AGRPT-EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +  ++P++            G+   EAM L   ML   ++P+ +  ++L D
Sbjct: 402 AMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLID 455



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  L G +T  G++P+++TY+T++ GYC +  +  A Q+F  +   ++ P+
Sbjct: 352 LCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPS 411

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ I+I+  CK   +D+A  +  +ML K    N VTY+ LIDG  KS  + SA D+ +
Sbjct: 412 VCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMK 471

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+       ++    +            +A+ L+  M   GI P+    + L D
Sbjct: 472 ELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALID 525



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  ++  + + P+ +TYN++I G C   R+  A+ L ++L       + IT+T 
Sbjct: 428 VDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTS 487

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM---- 123
           L+D  CK   +D A  +F KM E+G + N  TY+ LIDG  K   +K+A  +++ +    
Sbjct: 488 LLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKG 547

Query: 124 -CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGL 156
            C +  + N+        G   EA+ +   M  NG +PD +
Sbjct: 548 CCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAV 588



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + +AL L  +L  RG   D+ITY +++ G C    LD+A+ LF K+    ++PN
Sbjct: 457 LCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPN 516

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID  CK  R+ +A  +F  +L KG   +V TY+ +I G  K   +  A  +  
Sbjct: 517 KYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKS 576

Query: 122 EMCENNISPN 131
           +M +N   P+
Sbjct: 577 KMEDNGCIPD 586



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  +L    ++  +G + + ++Y T++ G C +     A++L   +     +P+ + +  
Sbjct: 218 VKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNT 277

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK+  +++A   +++M  +G   +V+TYS LI G+  +  +  AF +  EM   N
Sbjct: 278 IIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKN 337

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+P++             G+  EA  L   M + G+ P+ +  STL D
Sbjct: 338 INPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMD 385



 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   A+ L  Q+  +G+EPD++T + +I  +C L ++  +  +  K+  +  +PN
Sbjct: 142 LVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPN 201

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I  T L+   C +G +  +     K++ +G + N V+Y  L++G  K    + A  +  
Sbjct: 202 TIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLR 261

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            + + +  P++    T            EA   Y  M   GI PD +  STL
Sbjct: 262 MIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTL 313



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A+ LF ++ +RG++P+  TY  +I G C   RL  A +LF+ +       +
Sbjct: 492 LCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCID 551

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ++I   CKEG +D+A  M SKM + G   + VT+  +I   F+      A  +  
Sbjct: 552 VYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLH 611

Query: 122 EM 123
           EM
Sbjct: 612 EM 613



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KLF  +  +G   D+ TYN +I G C    LDEA+ +  K+      P+
Sbjct: 527 LCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPD 586

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++TF I+I +  ++   D A  +  +M+ KG
Sbjct: 587 AVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 617



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 1/123 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA  +  G L  R   P II +  I+     +     A+ L +++    ++P+ +T +IL
Sbjct: 115 DAVSQFNGMLLMRN-TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSIL 173

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ FC  G+M  +  +  K+L+ G + N +  + L+ G      +K +   ++++     
Sbjct: 174 INCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGF 233

Query: 129 SPN 131
             N
Sbjct: 234 QMN 236


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL +F  +  +G+ PDI TY ++I G C  +R  EA  L  ++T + + P+ +TF +
Sbjct: 249 VNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNV 308

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCKEG++ +A  +   M E G + NVVTYS L+ GY    ++  A  ++  M    
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             PNI            A R  EAMQL++ M+  G+ P+ +  +TL
Sbjct: 369 CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL 414



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  +  +G +P+I +YN +I GYC   R+DEA+QLF ++    L PN++++  LI 
Sbjct: 357 ARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIH 416

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC+ G++ +A  +F  M   G   ++ TYS L+DG+ K   +  AF ++  M    + P
Sbjct: 417 GFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKP 476

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+            +G   +A +L+  +   G+ P   L +T+ +
Sbjct: 477 NLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIIN 521



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 10/168 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++LF ++  +GL P+ ++YNT+I G+C L +L EA  LF  +      P+  
Sbjct: 385 KAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLF 444

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D FCK+G +  A  +F  M     K N+V Y+ L+    KS N K A  ++ E+
Sbjct: 445 TYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSEL 504

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY-NLQSSG 170
               + P++        QLY +++ NG+  +GLL   L  + N+++ G
Sbjct: 505 FVQGLQPHV--------QLYTTII-NGLCKEGLLDEALEAFRNMEADG 543



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 100/182 (54%), Gaps = 13/182 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  AL +   +T+ G+EP+++TY++++ GY     + EA +LF  +     KPN  
Sbjct: 315 KEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIF 374

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI+ +CK  R+D+A  +F++M+ +G   N V+Y+ LI G+ +   ++ A D++  M
Sbjct: 375 SYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNM 434

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           C N   P++             G   +A +L+ +M    + P+ L++ T+  + +  SG+
Sbjct: 435 CTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPN-LVMYTILVHAMCKSGN 493

Query: 172 QE 173
            +
Sbjct: 494 HK 495



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A++LF  +  +G +PD+ TYNTII G C +     A  L +K+     +PN
Sbjct: 173 LCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPN 232

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID+ C++  +++A  +FS M  KG   ++ TY+ LI G  K    K A  +  
Sbjct: 233 MVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLN 292

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   NI P+I             G+ +EA+ +  +M   G+ P+ +  S+L
Sbjct: 293 EMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSL 344



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D    +  ++   GL+P I+T+ T+I G C +    +AV+LF+ +     +P+  T+ 
Sbjct: 143 RVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYN 202

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +  KM E G + N+VTYS LID   + + +  A D++  M   
Sbjct: 203 TIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAK 262

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP+I              R  EA  L + M    IMPD +  + L D
Sbjct: 263 GISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVD 311



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D  + L  Q+   GL P+I T +  +  +C L R+D    +  K+  + L+P  +TFT
Sbjct: 108 YYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFT 167

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK G    A  +F  M+ KG + +V TY+ +I+G  K     +A  + ++M E 
Sbjct: 168 TLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEA 227

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              PN+    T            EA+ ++  M   GI PD    ++L
Sbjct: 228 GCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSL 274



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L  A +LF  +    L+P+++ Y  ++   C      +A +LF +L    L+P+  
Sbjct: 455 KQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQ 514

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +I+  CKEG +D+A   F  M   G   + ++Y+ +I G  + ++   A  +  EM
Sbjct: 515 LYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEM 574

Query: 124 CENNISPNIAGRP 136
            +     ++  RP
Sbjct: 575 RDRGFIADV--RP 585


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L +E  +  A+ L  ++ + GL+PD ITY T + G C +     A+ L  K+  +  +KP
Sbjct: 192 LCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKP 251

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + ++ +ID  CK+GR  D+  +F +M +KG   N+VTY+C+I G+  S    +A  + 
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +EM E  ISPN+             G+  EA +LYD ML  GI+P+ +  +++ D
Sbjct: 312 QEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366



 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F  +      PN
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI+ +CK GR+DD   +F +M  +G  A+ + Y  LI G+ K  N+  A D+++
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 638

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 639 EMISSGVYPD 648



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ D+G+ P+I+TYN +I G+C   R   A +L +++   ++ PN +T+  LI+AF 
Sbjct: 275 LFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFV 334

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           KEG+  +A  ++ +ML +G   N +TY+ +IDG+ K   + +A D++  M     SP++ 
Sbjct: 335 KEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVF 394

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      A R  + M+L   M R G++ + +  +TL
Sbjct: 395 TFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 434



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 90/160 (56%), Gaps = 17/160 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG+LT  GL PD++T+ T++ G C  +R+ EA+ LF ++     +P+ +TFT 
Sbjct: 132 LPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC----RPDVLTFTT 187

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G + + +TY   +DG  K  +  SA ++  +M E +
Sbjct: 188 LMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEIS 247

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR +++  L+  M   GI P+
Sbjct: 248 HIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPN 287



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 23/183 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P+ ITYN++I G+C  +RLD A  +F  +      P+
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFT LID +C   R+DD   +  +M  +G  AN VTY+ LI G+    ++ +A D+ +
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLR-----------NGIMPDGLLL 158
           +M  + + P+I             G+  +A++++ +M +           NG+ PD L  
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512

Query: 159 STL 161
           + L
Sbjct: 513 NIL 515



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD++TYN +ICG  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    NVVT++ LI+GY K+  +    +++ EM    I  +          
Sbjct: 564 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 623

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + +  +
Sbjct: 624 FRKVGNINGALDIFQEMISSGVYPDTITIRNM 655



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L  ++ +R + P+++TYN +I  +    +  EA +L++++    + PN+IT+  +I
Sbjct: 306 AAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI 365

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D FCK+ R+D A  MF  M  KG   +V T++ LIDGY  ++ +    ++  EM    + 
Sbjct: 366 DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 425

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            N            + G    A+ L   M+ +G+ PD +  +TL D
Sbjct: 426 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLD 471



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  PD+ T+ T+I GYC   R+D+ ++L  ++    L  N++
Sbjct: 370 KQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTV 429

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC  G ++ A  +  +M+  G   ++VT + L+DG   +  +K A ++++ M
Sbjct: 430 TYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAM 489

Query: 124 CE-----------NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 490 QKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 549

Query: 161 LAD 163
           + D
Sbjct: 550 MID 552



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ LF  +      P +I +N ++     + R D  + L++K+   Q++ +  +FTI
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC   ++  A   F K+ + G   +VVT++ L+ G      +  A D++ ++C  +
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPD 181

Query: 128 ISPNIA--------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             GR  EA+ L D M+ NG+ PD +   T  D
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVD 225



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 69/122 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+NT+I GYC   R+D+ ++LF ++    +  +
Sbjct: 554 LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVAD 613

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I +  LI  F K G ++ A  +F +M+  G   + +T   ++ G++  + ++ A  + E
Sbjct: 614 AIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLE 673

Query: 122 EM 123
           ++
Sbjct: 674 DL 675


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 98/174 (56%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F +  +RG  P+++TY+T+I G   + ++DEA+QL  K+  +  + N
Sbjct: 518 LCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRAN 577

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T++ ++D   K GRM+DA ++  +M + G   + VTY+ LIDG+FK Q ++ A  +  
Sbjct: 578 TVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLR 637

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E    P++            +GR  EA+++ D M   G  P+ +  S++ D
Sbjct: 638 EMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVD 691



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ A+ +  Q+ D G  PD +TYNT+I G+    RL EAV L  ++      P+
Sbjct: 588 LLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPS 647

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L    C+ GR D+A  +   M  +G   N +TYS ++DG  K+  +  A   +E
Sbjct: 648 VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFE 707

Query: 122 EMCENN-ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M  +  ++P++            AGR  EA +  + M+R G +PD +  S L
Sbjct: 708 KMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSIL 760



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 12/171 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++AA ++  ++ DRG  PD+  +  ++   C L R+DEA   F+++  +   P+
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  ++D   K GR++ A M+   + E      V T++  +DG  K+ N+  A++ ++
Sbjct: 176 AVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL---LSTLADYNLQSS 169
            M +  +SPN           YD+++ +G+   G L   L  L D N Q+ 
Sbjct: 236 SMPQTGVSPNTV--------TYDALI-DGLCKAGKLDIALGLLRDKNSQAG 277



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   F +    G  P ++TY+T+I G C  N +D+  +L E++      PN++T+  L++
Sbjct: 20  AFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVN 79

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A   +GR  +A  +  +M   G    ++T+  +I G  K   +++AF V +EM +    P
Sbjct: 80  ALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVP 139

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           ++             GR  EA   +  +L  G  PD +  +T+ D  L  +G  E
Sbjct: 140 DVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVD-GLYKAGRLE 193



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P ++TYNT++ G      + +A+ L E +    L P+ ITF  ++D  CKE R+ DA  
Sbjct: 470 RPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHN 529

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F + LE+G + NVVTYS LIDG  K   M  A  +  +M E     N            
Sbjct: 530 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL 589

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             GR  +A+ +   M   G +PD +  +TL D
Sbjct: 590 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLID 621



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 2   LIKECHLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   +  AL  F ++  D  + P +I Y+ +I G C   R+DEA +  E++      P
Sbjct: 693 LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIP 752

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF+ILI+  C  GR+D    +F  M E+G KA++  Y+ +I+ Y       +A+ + 
Sbjct: 753 DVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALL 812

Query: 121 EEMCENNISPN 131
           EEM  + I+ N
Sbjct: 813 EEMKTHGIAKN 823



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KP 60
           L +    D A+++   +  RG  P+ ITY++I+ G C   R+ EA+  FEK+   ++  P
Sbjct: 658 LCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAP 717

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + I ++ LID  CK GR+D+A     +M+  G   +VVT+S LI+G   +  + +  +++
Sbjct: 718 HVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELF 777

Query: 121 EEMCENNISPNI 132
             M E     +I
Sbjct: 778 CGMAERGCKADI 789



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+ +     A  L  ++   G  P++IT+  II G C    ++ A ++ +++      P+
Sbjct: 81  LLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPD 140

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               T+L+ A C+ GR+D+A   F ++L  G   + VTY+ ++DG +K+  +++A  V +
Sbjct: 141 VEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQ 200

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + E+  SP +            AG  T A + +DSM + G+ P+ +    L D
Sbjct: 201 LLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALID 254



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 20/167 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD AL   G L D+  +  +  +++++ G C  +RL+EA+QL + + CV   PN
Sbjct: 256 LCKAGKLDIAL---GLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCV---PN 309

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  L++  C+  R+D+A  +F  M E G  A+V+TY+ L+ G  K + +  A+   E
Sbjct: 310 VVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVE 369

Query: 122 EMCEN-NISPNI------------AGRPTEAMQLYDSMLR-NGIMPD 154
            M      SPN+            AGR  +A ++Y+ M+   GI P+
Sbjct: 370 LMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPN 416



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 15/157 (9%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K    + A KL  ++  RG  PD+ TY  +I G     +L  A   FE++    LKP+
Sbjct: 902  LFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPD 961

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +I ++ LIDAFCK  ++DDA   +  +   G +  +  YS ++D   K++    A +V  
Sbjct: 962  AIVYSSLIDAFCKADKVDDA---WKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIR 1018

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSM 146
            EM   N  P I             GR  EA++L + +
Sbjct: 1019 EMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDL 1055



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 12/140 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++TYN +I G C   R+ +A   F K      +P  +T++ +ID  C++  +D    +  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
           +M  +G   N VTY+ L++        K AF + E M  N   P +             G
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
               A ++ D M+  G +PD
Sbjct: 121 EIEAAFRVVDEMVDRGFVPD 140



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 35/192 (18%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITF 65
            +D A +LF  + + G   D+ITYN ++ G C L R+ EA +  E +   +   PN +TF
Sbjct: 325 RVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTF 384

Query: 66  TILIDAFCKEGRMDDATMMFSKMLE-KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           + LI   C  GR++ A  ++ +M+  +G   N  TY+ L++G  K+ + +     +E+M 
Sbjct: 385 STLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQML 444

Query: 125 ENNI---------SPNI------AGRPT------------------EAMQLYDSMLRNGI 151
           E            SP +        RPT                  +A+ L + M+ +G+
Sbjct: 445 EREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGL 504

Query: 152 MPDGLLLSTLAD 163
            PD +  +++ D
Sbjct: 505 SPDVITFNSVLD 516



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +   ++   G  PD++T++ +I G C   R+D  ++LF  +     K +
Sbjct: 729 LCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKAD 788

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA---FD 118
              +  +I+A+C +G    A  +  +M   G   N VT+  +I     +  +  A   F 
Sbjct: 789 IYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFH 848

Query: 119 VYEEMCENNISPN------IAGRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
              E C + IS N      +A R +E A++L  +M+ +G  PD     T+ D  L  +GS
Sbjct: 849 SIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMD-GLFKAGS 907

Query: 172 QE 173
            E
Sbjct: 908 PE 909



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 15/160 (9%)

Query: 26   DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
            D I+YNT+I    +  R ++A++L   +      P++  +  ++D   K G  + A  + 
Sbjct: 856  DEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLL 915

Query: 86   SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
             +M  +G   ++ TY+ +I G  K++ +  A D +EEM   N+ P+             A
Sbjct: 916  QEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKA 975

Query: 134  GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             +  +A +L  S   +GI P   + ST+ D   ++ G+ +
Sbjct: 976  DKVDDAWKLLRS---SGIEPTITMYSTMVDSLCKNRGTDK 1012



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 33/175 (18%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--------------------CVQL-KP 60
           G+ P+  TY  ++ G C         Q FE++                      VQ+ +P
Sbjct: 412 GISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRP 471

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             +T+  L+    K G + DA  +   M+E G   +V+T++ ++DG  K Q +  A +V+
Sbjct: 472 TLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 531

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +   E    PN+    T            EA+QL   M+  G   + +  ST+ D
Sbjct: 532 KRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVD 586



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+     + AL+L   +   G  PD   Y T++ G       + A +L +++      P+
Sbjct: 867  LVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPD 926

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              T+TI+I    K  ++  A   F +ML K  K + + YS LID + K+  +    D ++
Sbjct: 927  LRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVD---DAWK 983

Query: 122  EMCENNISPNIAGRPTEAMQLYDSMLRN 149
             +  + I P I    T    + DS+ +N
Sbjct: 984  LLRSSGIEPTITMYST----MVDSLCKN 1007


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLID 319



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G  P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAP 414



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 72/132 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +  +P++ 
Sbjct: 406 EMQRDGYAPSVV 417



 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HL+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L +E  +  A+ L  ++ + GL+PD ITY T + G C +     A+ L  K+  +  +KP
Sbjct: 192 LCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKP 251

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + ++ +ID  CK+GR  D+  +F +M +KG   N+VTY+C+I G+  S    +A  + 
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +EM E  ISPN+             G+  EA +LYD ML  GI+P+ +  +++ D
Sbjct: 312 QEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366



 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F  +      PN
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI+ +CK GR+DD   +F +M  +G  A+ + Y  LI G+ K  N+  A D+++
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 638

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 639 EMISSGVYPD 648



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ D+G+ P+I+TYN +I G+C   R   A +L +++   ++ PN +T+  LI+AF 
Sbjct: 275 LFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFV 334

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           KEG+  +A  ++ +ML +G   N +TY+ +IDG+ K   + +A D++  M     SP++ 
Sbjct: 335 KEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVF 394

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      A R  + M+L   M R G++ + +  +TL
Sbjct: 395 TFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 434



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 90/160 (56%), Gaps = 17/160 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG+LT  GL PD++T+ T++ G C  +R+ EA+ LF ++     +P+ +TFT 
Sbjct: 132 LPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC----RPDVLTFTT 187

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G + + +TY   +DG  K  +  SA ++  +M E +
Sbjct: 188 LMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEIS 247

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR +++  L+  M   GI P+
Sbjct: 248 HIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPN 287



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 23/183 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P+ ITYN++I G+C  +RLD A  +F  +      P+
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFT LID +C   R+DD   +  +M  +G  AN VTY+ LI G+    ++ +A D+ +
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLR-----------NGIMPDGLLL 158
           +M  + + P+I             G+  +A++++ +M +           NG+ PD L  
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512

Query: 159 STL 161
           + L
Sbjct: 513 NIL 515



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD++TYN +ICG  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    NVVT++ LI+GY K+  +    +++ EM    I  +          
Sbjct: 564 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 623

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + +  +
Sbjct: 624 FRKVGNINGALDIFQEMISSGVYPDTITIRNM 655



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L  ++ +R + P+++TYN +I  +    +  EA +L++++    + PN+IT+  +I
Sbjct: 306 AAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI 365

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D FCK+ R+D A  MF  M  KG   +V T++ LIDGY  ++ +    ++  EM    + 
Sbjct: 366 DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 425

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            N            + G    A+ L   M+ +G+ PD +  +TL D
Sbjct: 426 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLD 471



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  PD+ T+ T+I GYC   R+D+ ++L  ++    L  N++
Sbjct: 370 KQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTV 429

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC  G ++ A  +  +M+  G   ++VT + L+DG   +  +K A ++++ M
Sbjct: 430 TYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAM 489

Query: 124 CE-----------NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 490 QKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 549

Query: 161 LAD 163
           + D
Sbjct: 550 MID 552



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ LF  +      P +I +N ++     + R D  + L++K+   Q++ +  +FTI
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC   ++  A   F K+ + G   +VVT++ L+ G      +  A D++ ++C  +
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPD 181

Query: 128 ISPNIA--------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             GR  EA+ L D M+ NG+ PD +   T  D
Sbjct: 182 VLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVD 225



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 69/122 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+NT+I GYC   R+D+ ++LF ++    +  +
Sbjct: 554 LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVAD 613

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I +  LI  F K G ++ A  +F +M+  G   + +T   ++ G++  + ++ A  + E
Sbjct: 614 AIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLE 673

Query: 122 EM 123
           ++
Sbjct: 674 DL 675


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++   ++ DRG+ P++ TYN ++ G+C L +L+EA +LF+++    + P+
Sbjct: 238 LCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPD 297

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T TIL+D  CKEG + +A ++F  M EKG + N+ TY+ L+DGY   + M  A  V+E
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFE 357

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P +            + R  EA  L   M    + PD +  STL
Sbjct: 358 IMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 409



 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D A+ + G++   G+ P   T+N +I G C+  ++ EAV+LF ++     +PN I++ 
Sbjct: 138 HVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYN 197

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +F KM + G K +VVTY+ +ID   K + +  A +   EM + 
Sbjct: 198 TIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDR 257

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I PN            I G+  EA +L+  M+   +MPD + L+ L D
Sbjct: 258 GIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVD 306



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 13/179 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A++LF ++  RG EP++I+YNTII G C       AV +F+K+     KP+
Sbjct: 168 LCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPD 227

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID+ CK+  ++DA    S+ML++G   NV TY+C++ G+     +  A  +++
Sbjct: 228 VVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFK 287

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQ 167
           EM   ++ P+              G  +EA  ++++M   G+ P+    + L D Y LQ
Sbjct: 288 EMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQ 346



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L  ++  + L PD +TY+T++ G C   R  EA+ +F+++    L PN +
Sbjct: 380 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLV 439

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D FCK G +D+A  +   M EK  + N+V ++ LI+G F +  ++ A +++ ++
Sbjct: 440 TYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKL 499

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             + I P I             G   EA  L+  M  +G +P+    + +    LQ+  S
Sbjct: 500 FADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDS 559



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F  +T++G+EP+I TYN ++ GYC    ++EA ++FE +      P 
Sbjct: 308 LCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPG 367

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+ FCK  RMD+A  + ++M  K    + VTYS L+ G  +    K A ++++
Sbjct: 368 VHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFK 427

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EMC   + PN+             G   EA++L  SM    + P+
Sbjct: 428 EMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPN 472



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 21/177 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K+F  +  +G  P + +YN +I G+C   R+DEA  L  ++    L P+++T++ 
Sbjct: 349 MNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYST 408

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C+ GR  +A  +F +M   G   N+VTYS L+DG+ K  ++  A  + + M E  
Sbjct: 409 LMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK 468

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMP---------DGLLLSTLAD 163
           + PN            IAG+   A +L+  +  +GI P          GLL   L+D
Sbjct: 469 LEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSD 525



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+      + L  Q+   G+  ++ + N +I   C LN +D AV +  K+  + + P + 
Sbjct: 100 KKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTAS 159

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI+  C EG++ +A  +F++M+ +G + NV++Y+ +I+G  K+ N   A DV+++M
Sbjct: 160 TFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKM 219

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
            +N   P++    T            +AM+    ML  GI P+
Sbjct: 220 EQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPN 262



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 73/130 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  HLD ALKL   + ++ LEP+I+ +  +I G     +L+ A +LF KL    ++P   
Sbjct: 450 KHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIR 509

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T++I    KEG  D+A  +F KM + G   N  +Y+ +I G+ ++Q+  +A  + +EM
Sbjct: 510 TYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 569

Query: 124 CENNISPNIA 133
                S N++
Sbjct: 570 VGKRFSANLS 579



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL  F ++      P +  +   +  +    +    V L  ++    +  N  +  +
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNV 128

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C+   +D A  +  KM + G      T++ LI+G      +K A +++ EM    
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRG 188

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN+             G  + A+ ++  M +NG  PD +  +T+ D
Sbjct: 189 HEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIID 236



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF +L   G+ P I TY  +I G       DEA  LF K+      PNS ++ +
Sbjct: 489 LEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNV 548

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +I  F +      A  +  +M+ K   AN+ T+  L+D
Sbjct: 549 MIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586



 Score = 38.9 bits (89), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE   D A  LF ++ D G  P+  +YN +I G+        A++L +++   +   N
Sbjct: 518 LLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSAN 577

Query: 62  SITFTILID 70
             TF +L+D
Sbjct: 578 LSTFQMLLD 586


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 87/155 (56%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L G++ D    PD++TY T++  +C + RLD+A +LF+++   +L P+ +TFT 
Sbjct: 262 MDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTS 321

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  C EGRM+DA  +  ++  +G    + TY+C++DGY K+  ++ A ++  +     
Sbjct: 322 LVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRG 381

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
             PN             AGR  +A+Q  D +   G
Sbjct: 382 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 416



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A+ L   + +RG  P ++TYN+II G+C   R+DEA    E++      P+ IT+T
Sbjct: 124 RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYT 183

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--C 124
            LI  FCK   +     +  ++  +G   ++VTYS +IDG  K+  ++ A D++EEM   
Sbjct: 184 ALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA 243

Query: 125 ENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              I+ N        AG   EA++L   M+ +   PD +  +TL
Sbjct: 244 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTL 287



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 32/154 (20%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-------------- 56
            L+L G++T RG  PDI+TY+T+I G C   RL +AV +FE+++C               
Sbjct: 198 GLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYC 257

Query: 57  ------------------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
                             +  P+ +T+T L+ AFCK GR+DDA  +F +M+      +VV
Sbjct: 258 RAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVV 317

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           T++ L+DG      M+ A ++ EE+      P I
Sbjct: 318 TFTSLVDGLCGEGRMEDALELLEEITRRGCPPTI 351



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  AL ++ Q+ D    PD +TY  ++ G     RL +AVQ+ +++   +  P+
Sbjct: 15  LCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPD 73

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T T+++ + C   R+DDA  +  +ML +G  AN +TYS L+DG  K + +  A  + E
Sbjct: 74  NTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVE 133

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M E   +P +            A R  EA    + M+  G  PD +  + L
Sbjct: 134 TMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTAL 185



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 12/152 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +L  ++  RG+  + ITY+ ++ G C   RLDEAV L E +      P  +T+ 
Sbjct: 89  RVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYN 148

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  FC+  R+D+A     +M+ +G   +++TY+ LI G+ KS+++    ++  E+   
Sbjct: 149 SIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRR 208

Query: 127 NISPNI------------AGRPTEAMQLYDSM 146
             +P+I            AGR  +A+ +++ M
Sbjct: 209 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM 240



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 14/166 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  ++ AL+L  ++T RG  P I TYN ++ GYC  N++ +A +L          PN
Sbjct: 326 LCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPN 385

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM-LEKGP-KANVVTYSCLIDGYFKSQNMKSAFDV 119
           ++T+ IL+   C+ GR D A     ++  E GP   +V  Y+ ++D   +      A   
Sbjct: 386 TVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQF 445

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           YEEM +    P              A +P +A +L + M++ G  P
Sbjct: 446 YEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTP 491



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 13/118 (11%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P ++   ++I   C+ GR+  A  ++ +M +  P  + +TY+ L+ G  K++ ++ A 
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPP-DFLTYTKLVHGLSKARRLRDAV 59

Query: 118 DVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            V +EM      P+            +  R  +A +L + ML  G+  + +  S L D
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVD 117



 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 9   DAALKLFGQLTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           D AL+   QL   G      +  Y  I+   C   R D+AVQ +E++      P + TF 
Sbjct: 403 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA 462

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ A CK  +   A  +  +M++ G      T   ++  Y ++  ++ A ++  E+
Sbjct: 463 TVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 519



 Score = 40.4 bits (93), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/87 (21%), Positives = 43/87 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++   D A++ + ++  RG  P   T+ T++   C  ++  +A +L E++      P 
Sbjct: 433 LCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPG 492

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM 88
             T   ++ A+C+ G +  A  + S++
Sbjct: 493 PGTCDAVVSAYCRAGMIQKADELASEL 519


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A KLF ++ D G+ P  +TYN +I G C    LDEA++LF+ +     +P+
Sbjct: 195 LAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILIDA CK G++D+A  +  +M + G   +VVTYS LI G      +  A  + E
Sbjct: 255 RFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M +    P +            AGR  EA ++ D+M+ +G  PD +  +TL   + ++ 
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 170 GSQE 173
            ++ 
Sbjct: 375 QTER 378



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A +L  ++TD G  PD++TY+T+I G CS+ R+D+A  L E +   Q KP  +
Sbjct: 267 KRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVV 326

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   LI   CK GR+ +A  +   M+  G   +VVTY+ L+ G+ ++   + A ++  +M
Sbjct: 327 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 386

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
               ++PN+            A R  EA  ++  M  +G  P+
Sbjct: 387 VARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 429



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL LF ++   G  P+  ++NTII G C  +++D+A Q+F ++    + P+
Sbjct: 125 LCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPD 184

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S ++ ILID   K G++++A  +F +ML+ G   + VTY+ +I G   +  +  A ++++
Sbjct: 185 SWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFK 244

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P     NI        G+  EA +L   M  +G +PD +  STL
Sbjct: 245 SMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTL 296



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 16/177 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  LF +L   G+ P  + Y ++I G C  N  D+A +LF  +      P+
Sbjct: 20  LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPS 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ++IDA CK G +++A  +  KM+E G   +VVTY+ ++DG  KS  ++ A  ++ 
Sbjct: 80  PVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFN 139

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD----GLLLSTLA 162
           EM     +PN     T            +A Q++  M    I PD    G+L+  LA
Sbjct: 140 EMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLA 196



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+ A  L  ++ + G  PD++TYNT++ G C  +R++EA+ LF ++  +   PN  
Sbjct: 92  KRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRR 151

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +   +I   C++ ++D A  +F +M  K    +  +Y  LIDG  K+  +  A+ +++ M
Sbjct: 152 SHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRM 211

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            ++ I+P+            +A    EA++L+ SM   G  P     + L D +
Sbjct: 212 LDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAH 265



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++   +   G  PD++TYNT++ G+C   + + A +L   +    L PN
Sbjct: 335 LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L+   CK  R+ +A  +F++M   G   N+ TY+ LI G+  +  +     ++ 
Sbjct: 395 VVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG 454

Query: 122 EMCENNISPNIAGRPTEAMQLYDS 145
           EM    ISP+     T A +L  S
Sbjct: 455 EMVCAGISPDHVVYGTLAAELCKS 478



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + +R + PD  +Y  +I G     +L++A  LF+KL    + P+++ +T LI   C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
            DDA  +F+ M  +G   + VTY+ +ID   K   ++ A D+ ++M E+   P++     
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPD 154
                  + R  EA+ L++ M R G  P+
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPN 149



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L   +  RGL P+++TY  ++ G C  NRL EA  +F ++      PN  T+T L
Sbjct: 377 ERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTAL 436

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  FC  G++D    +F +M+  G   + V Y  L     KS     A ++  E  E+  
Sbjct: 437 ILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLR 496

Query: 129 SPNI--------------AGRPTEAMQLYDSMLRNGIMP 153
           S                 AG+   A+     M+R G +P
Sbjct: 497 SEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLP 535



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 2/131 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  +F Q+   G  P++ TY  +I G+CS  ++D  ++LF ++ C  + P+
Sbjct: 405 LCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLE--KGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            + +  L    CK GR   A  +  +  E  +        Y   +DG  ++  M+ A   
Sbjct: 465 HVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGF 524

Query: 120 YEEMCENNISP 130
             +M      P
Sbjct: 525 VRDMVRGGQLP 535


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  L  A +  G +   G +P++++YNTII GY S   ++ A ++ + +    ++P
Sbjct: 258 VLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEP 317

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +S T+  LI   CKEGR+++A+ +F KM+E G   N VTY+ LIDGY    +++ AF   
Sbjct: 318 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 377

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM +  I P+++            GR  EA  +   M + GI+PD +  + L
Sbjct: 378 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 430



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  LF ++ + GL P+ +TYNT+I GYC+   L+ A    +++    + P+  
Sbjct: 331 KEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVS 390

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+ A   EGRM +A  M  +M +KG   + +TY+ LI+GY +  N K AFD++ EM
Sbjct: 391 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM 450

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I P                R  EA  L++ +L  G+ PD ++ + + D
Sbjct: 451 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 502



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   +  A  LF ++ D+G+ PD+I +N ++ G+C+   ++ A  L +++    + P
Sbjct: 468 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPP 527

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF  L+   C+EG++++A M+  +M  +G K + ++Y+ LI GY +  ++K AF V 
Sbjct: 528 DEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVR 587

Query: 121 EEMCENNISPNIAG---------RPTE---AMQLYDSMLRNGIMPD 154
           +EM     +P +           +  E   A +L   M+  GI PD
Sbjct: 588 DEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A  +  ++  +G+ PD ITYN +I GY       +A  L  ++    ++P 
Sbjct: 399 LFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPT 458

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI    +  RM +A  +F K+L++G   +V+ ++ ++DG+  + N++ AF + +
Sbjct: 459 HVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLK 518

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   ++ P+              G+  EA  L D M R GI PD +  +TL
Sbjct: 519 EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 570



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 16/179 (8%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +L++ C      D A K F  + ++G+ P I T N ++  +  LNR++ A  L+ ++  +
Sbjct: 184 LLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRL 243

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           ++     TF I+++  CKEG++  A      M   G K NVV+Y+ +I GY    N++ A
Sbjct: 244 RISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 303

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + + M    I P+              GR  EA  L+D M+  G++P+ +  +TL D
Sbjct: 304 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 362



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A  L  ++  RG++PD I+YNT+I GY     + +A ++ +++  +   P  +
Sbjct: 541 REGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLL 600

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+  LI   CK    D A  +  +M+ KG   +  TY  LI+G
Sbjct: 601 TYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 643


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  L  A +  G +   G +P++++YNTII GY S   ++ A ++ + +    ++P
Sbjct: 236 VLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEP 295

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +S T+  LI   CKEGR+++A+ +F KM+E G   N VTY+ LIDGY    +++ AF   
Sbjct: 296 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 355

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM +  I P+++            GR  EA  +   M + GI+PD +  + L
Sbjct: 356 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 408



 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  LF ++ + GL P+ +TYNT+I GYC+   L+ A    +++    + P+  
Sbjct: 309 KEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVS 368

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+ A   EGRM +A  M  +M +KG   + +TY+ LI+GY +  N K AFD++ EM
Sbjct: 369 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM 428

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I P                R  EA  L++ +L  G+ PD ++ + + D
Sbjct: 429 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 480



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   +  A  LF ++ D+G+ PD+I +N ++ G+C+   ++ A  L +++    + P
Sbjct: 446 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPP 505

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF  L+   C+EG++++A M+  +M  +G K + ++Y+ LI GY +  ++K AF V 
Sbjct: 506 DEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVR 565

Query: 121 EEMCENNISPNIAG---------RPTE---AMQLYDSMLRNGIMPD 154
           +EM     +P +           +  E   A +L   M+  GI PD
Sbjct: 566 DEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A  +  ++  +G+ PD ITYN +I GY       +A  L  ++    ++P 
Sbjct: 377 LFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPT 436

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI    +  RM +A  +F K+L++G   +V+ ++ ++DG+  + N++ AF + +
Sbjct: 437 HVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLK 496

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   ++ P+              G+  EA  L D M R GI PD +  +TL
Sbjct: 497 EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTL 548



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 16/179 (8%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +L++ C      D A K F  + ++G+ P I T N ++  +  LNR++ A  L+ ++  +
Sbjct: 162 LLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRL 221

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           ++     TF I+++  CKEG++  A      M   G K NVV+Y+ +I GY    N++ A
Sbjct: 222 RISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 281

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + + M    I P+              GR  EA  L+D M+  G++P+ +  +TL D
Sbjct: 282 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 340



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A  L  ++  RG++PD I+YNT+I GY     + +A ++ +++  +   P  +
Sbjct: 519 REGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLL 578

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+  LI   CK    D A  +  +M+ KG   +  TY  LI+G
Sbjct: 579 TYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 621


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 98/174 (56%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +  +D A+ L  Q+    LEP+++T+N +I G+C    ++EA+ LF  +    + PN
Sbjct: 273 LCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPN 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+T LIDA+CK+GRM+DA  +++ M+++G    V TY+CLI G  +  ++K+A  +  
Sbjct: 333 AMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMN 392

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    +S ++             G   +A++L D M   G+ P  +  +TL D
Sbjct: 393 EMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMD 446



 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 83/130 (63%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++  A+++FG++  +GL P+++TYN +I G CS  ++DEAV L +++    L+PN +
Sbjct: 240 KDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVV 299

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  +LI+ FCK   +++A  +F+ M ++G   N +TY+ LID Y K   M+ AF +Y  M
Sbjct: 300 THNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMM 359

Query: 124 CENNISPNIA 133
            +  I P ++
Sbjct: 360 IDRGIFPEVS 369



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 15/177 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE---AVQLFEKLTCVQL 58
           L K   L+ A  +   +   G+ P++ITYNT+I GYC + R+ +   A  + +++    +
Sbjct: 165 LCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGI 224

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            PN +T+ ILID FCK+  +  A  +F +M  +G + NVVTY+ LI+G      +  A  
Sbjct: 225 CPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVA 284

Query: 119 VYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + ++M  +++ PN+                 EA+ L++ M + G+ P+ +  +TL D
Sbjct: 285 LRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLID 341



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 90/158 (56%), Gaps = 15/158 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK   ++  +G+ P+ +TYN +I G+C    +  A+++F ++    L+PN +T+ IL
Sbjct: 213 DAILK---EMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNIL 269

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C +G++D+A  +  +M+    + NVVT++ LI+G+ K++ +  A +++ +M +  +
Sbjct: 270 INGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGV 329

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            PN              GR  +A  LY+ M+  GI P+
Sbjct: 330 DPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPE 367



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A  L+  + DRG+ P++ TYN +I G C    +  A  L  ++   +L  + +
Sbjct: 345 KDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVV 404

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILID+ CK+G    A  +  +M EKG   + VTY+ L+DGY +  N+++A  V   M
Sbjct: 405 TYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRM 464

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
                  N+             GR  +A  L + ML  G++P+
Sbjct: 465 ERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPN 507



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE        ++ ++  R +E ++I++N ++ G C + +L+ A  + E +    + PN
Sbjct: 130 LVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPN 189

Query: 62  SITFTILIDAFCKEGR---MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            IT+  LID +CK GR   M  A  +  +M+ KG   N VTY+ LIDG+ K +N+  A  
Sbjct: 190 VITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMR 249

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           V+ EM    + PN+             G+  EA+ L D M+ + + P+
Sbjct: 250 VFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPN 297



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  + AA  L  ++  + L  D++TYN +I   C      +AV+L +++    L P+
Sbjct: 378 LCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPS 437

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D +C+EG +  A ++ ++M  KG +ANVVT++ LI G+     ++ A  +  
Sbjct: 438 HVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLN 497

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
           EM E  + PN   R T  + + + M+  G +PD
Sbjct: 498 EMLERGLVPN---RTTYEI-IKEEMMEKGFVPD 526



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++   +    + F +  D G +  +I+ N ++ G    +   +   ++ ++   +++ N
Sbjct: 95  FVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELN 154

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN---MKSAFD 118
            I+F I+++  CK G+++ A  +   M   G   NV+TY+ LIDGY K      M  A  
Sbjct: 155 VISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADA 214

Query: 119 VYEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           + +EM    I PN       I G       + AM+++  M R G+ P+
Sbjct: 215 ILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPN 262



 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 45  EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
              + F++      K + I+   L+    KE    D   ++ +M+++  + NV++++ ++
Sbjct: 103 RGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVV 162

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNI---------------AGRPTEAMQLYDSMLRN 149
           +G  K   +  A DV E+M    +SPN+                G+  +A  +   M+  
Sbjct: 163 NGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAK 222

Query: 150 GIMPDGLLLSTLAD 163
           GI P+ +  + L D
Sbjct: 223 GICPNEVTYNILID 236


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 98/174 (56%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F +  +RG  P+++TY+T+I G   + ++DEA+QL  K+  +  + N
Sbjct: 218 LCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRAN 277

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T++ ++D   K GRM+DA ++  +M + G   + VTY+ LIDG+FK Q ++ A  +  
Sbjct: 278 TVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLR 337

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E    P++            +GR  EA+++ D M   G  P+ +  S++ D
Sbjct: 338 EMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVD 391



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ A+ +  Q+ D G  PD +TYNT+I G+    RL EAV L  ++      P+
Sbjct: 288 LLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPS 347

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L    C+ GR D+A  +   M  +G   N +TYS ++DG  K+  +  A   +E
Sbjct: 348 VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFE 407

Query: 122 EMCENN-ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M  +  ++P++            AG+  EA +  + M+R G +PD +  S L
Sbjct: 408 KMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSIL 460



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 13/185 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             K   L  A+ L  ++ + G  P ++TY T+  G C   R DEAV++ + +      PN
Sbjct: 323 FFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPN 382

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVY 120
           +IT++ ++D  CK GR+ +A   F KM      A +V+ YS LIDG  K+  +  A++  
Sbjct: 383 AITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFL 442

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           E M      P++            AGR    ++L+  M   G +PD +  +TL D   ++
Sbjct: 443 ERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRA 502

Query: 169 SGSQE 173
           S   E
Sbjct: 503 SRVDE 507



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 17/177 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ LF Q+ D+ + PD++TY  +I G     R+ EA  LFE+       P 
Sbjct: 5   LCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPT 64

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+  +ID  CK GR+++A  ++  M +  G +  VVTYS LIDG  +   +     + 
Sbjct: 65  VVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLL 124

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
           EEM     +PN              GR  EA  L + M  NG  P+    GL++  L
Sbjct: 125 EEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGL 181



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 2   LIKECHLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   +  AL  F ++  D  + P +I Y+ +I G C   ++DEA +  E++      P
Sbjct: 393 LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIP 452

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF+ILI+  C  GR+D    +F  M E+G   ++VTY+ L+D   ++  +  AFD++
Sbjct: 453 DVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLF 512

Query: 121 EEMCENNISPNIAGRPT 137
           ++M  + +SP+ + R T
Sbjct: 513 QQMRSDGLSPDRSTRRT 529



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 14/156 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  P ++TY+T+I G C  + +D+  +L E++      PN++T+  L++A   +GR  +A
Sbjct: 96  GFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEA 155

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE--MCENNISPNI------- 132
             +  +M   G    ++T+  +I G  K   +++AF V +E  M E+ +SP++       
Sbjct: 156 FSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215

Query: 133 -----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  R  +A  ++   L  G  P+ +  STL D
Sbjct: 216 DGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLID 251



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 33  IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +I G C   ++D+A+ LF+++    + P+ +T+  LID   K+ R+ +A  +F +   KG
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-NISPNIAGRPT------------EA 139
               VVTY+ +IDG  K   +++A  +Y++M  +    P +    T            + 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 140 MQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            +L + M   G  P+ +  +TL +  L    S+E
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKE 154



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 59/121 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +   ++   G  PD++T++ +I G C   R+D  ++LF  +      P+
Sbjct: 429 LCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPD 488

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  C+  R+D+A  +F +M   G   +  T   +I G  +    + A  + +
Sbjct: 489 MVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQD 548

Query: 122 E 122
           E
Sbjct: 549 E 549


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 15/165 (9%)

Query: 5   ECHLDAALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           E   + AL+L   + D   R   P++++YNT+I G+ +  ++D+A  LF  +T   + PN
Sbjct: 179 ENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPN 238

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+TI+ID  CK   +D A  +F +M++KG + N+VTY+CLI GY      K    + +
Sbjct: 239 VVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLK 298

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM  + + P+              G+ TEA +L+DSM+R GI PD
Sbjct: 299 EMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPD 343



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  +F Q+ D+G+ P+I+TY  +I GY S+ +  E V++ ++++   L+P+  T+ +
Sbjct: 255 VDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGL 314

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK+G+  +A  +F  M+ KG K +V  Y  ++ GY     +       + M  N 
Sbjct: 315 LLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNG 374

Query: 128 ISPN----------IAGRPT--EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ISPN           A +    EAM +++ M + G+ P+ +  +TL D
Sbjct: 375 ISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLID 422



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 48/219 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A +L   +   G  PDII+YN +I G+C + + DEA +L + +  V LKPN
Sbjct: 494 LCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPN 553

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY- 120
             T+  L+  +C++GR+DDA  +F +ML  G    VVTY+ ++ G FK++    A ++Y 
Sbjct: 554 ECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYL 613

Query: 121 ----------------------------------EEMCENNISPNIA------------G 134
                                             + +C  ++  +I             G
Sbjct: 614 NMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDG 673

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           R  +AM L+ ++  NG++PD      +A+ NL   GS E
Sbjct: 674 RKEDAMNLFATISANGLVPDVTTYRLIAE-NLIEEGSLE 711



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 86/154 (55%), Gaps = 12/154 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +LF ++ ++G+ P+++ +NTI+C  C+  R+ +A +L + +  V  +P+ I++  L
Sbjct: 466 EKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNAL 525

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C  G+ D+A+ +   ML  G K N  TY+ L+ GY +   +  A+ V++EM  N I
Sbjct: 526 IRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGI 585

Query: 129 SPNIAG------------RPTEAMQLYDSMLRNG 150
           +P +              R +EA +LY +M+ +G
Sbjct: 586 TPVVVTYNTILHGLFKTRRFSEAKELYLNMITSG 619



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 21/171 (12%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +   G+ P+   +N + C +     + EA+ +F K+    L PN + +  LIDA CK GR
Sbjct: 370 MVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGR 429

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           +DDA + F++M+ +G   N+V ++ L+ G       + A +++ EM    I PN+     
Sbjct: 430 VDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNT 489

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                   GR  +A +L D M R G  PD      +  YN    G   HC+
Sbjct: 490 IMCNLCTEGRVMKAQRLIDLMERVGTRPD------IISYNALIRG---HCL 531



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A KLF  +  +G++PD+  Y  I+ GY +   L E     + +    + PN
Sbjct: 319 LCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPN 378

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F I+  AF K+  + +A  +F+KM ++G   NVV Y+ LID   K   +  A   + 
Sbjct: 379 HYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFN 438

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    ++PNI              +  +A +L+  M+  GI P+ +  +T+
Sbjct: 439 QMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTI 490



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 13/157 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK F Q+ + G+ P+I+ + +++ G C++++ ++A +LF ++    + PN + F  +
Sbjct: 432 DAELK-FNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTI 490

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C EGR+  A  +   M   G + ++++Y+ LI G+        A  + + M    +
Sbjct: 491 MCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGL 550

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMP 153
            PN              GR  +A  ++  ML NGI P
Sbjct: 551 KPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITP 587



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A+ +F ++  +GL P+++ Y T+I   C L R+D+A   F ++    + PN +
Sbjct: 391 KKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIV 450

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            FT L+   C   + + A  +F +M+ +G   NVV ++ ++        +  A  + + M
Sbjct: 451 VFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLM 510

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 P+I             G+  EA +L D ML  G+ P+    +TL
Sbjct: 511 ERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTL 560



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +D A  +F ++   G+ P ++TYNTI+ G     R  EA +L+  +     + +  
Sbjct: 566 RDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIY 625

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I+++   K   +D+A  MF  +  K  + +++T++ +I    K    + A +++  +
Sbjct: 626 TYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATI 685

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             N + P++             G   E   ++  M ++G  P+ L+L+ L 
Sbjct: 686 SANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLV 736



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A +L+  +   G +  I TYN I+ G    N +DEA+++F+ L    L+ +
Sbjct: 599 LFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVD 658

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF I+I A  K+GR +DA  +F+ +   G   +V TY  + +   +  +++    ++ 
Sbjct: 659 IITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFS 718

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           EM ++  +PN         +L   +LR  I   G  LS + + N     S
Sbjct: 719 EMEKSGCAPNSLMLNFLVRRL---LLRGDISRAGAYLSKIDEKNFSLEAS 765



 Score = 42.4 bits (98), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 48/111 (43%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   + A+ LF  ++  GL PD+ TY  I         L+E   +F ++      PN
Sbjct: 669 LLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPN 728

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           S+    L+      G +  A    SK+ EK       T S LI  + + ++
Sbjct: 729 SLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSREEH 779



 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 61/217 (28%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL------DEAVQLFEKLT---CVQL 58
           +D ALKLF +         II +N ++    S +R       +  V  F ++    C ++
Sbjct: 31  VDDALKLFDEFLHHARPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDCCSKV 90

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFS-------------------------------- 86
            P+  T++IL+  FC+ GR++     F                                 
Sbjct: 91  APDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEAM 150

Query: 87  -----KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS---PNIA----- 133
                +M E G   NVV+Y+ L+ G+      + A ++   M +  +    PN+      
Sbjct: 151 GVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTV 210

Query: 134 -------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  G+  +A  L+  M   GI P+ +  + + D
Sbjct: 211 INGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVID 247


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L+ ++  +G+ PD++TYN +I G+C + ++ +A  LF K+    + PN  TF I
Sbjct: 228 VNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNI 287

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCKE R+ +A  + + M+++G K +V TY+ L+D Y   + +  A  ++  + +  
Sbjct: 288 LVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRG 347

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++PNI              +  EAM L+  M  N I+PD +  ++L D
Sbjct: 348 VNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLID 395



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 98/181 (54%), Gaps = 13/181 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +F  ++ RG+ P+I +Y+ +I G+C + ++DEA+ LF+++ C  + P+
Sbjct: 329 LVKE--VNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPD 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK G++  A  +  +M ++G   + +TY+ ++D   K+  +  A  +  
Sbjct: 387 VVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLT 446

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNG-------IMPDGLLLSTLADYNLQSSGSQEH 174
           +M +  I P+I    T    L D + +NG       +  D L+   + D N+ ++  Q  
Sbjct: 447 KMKDEGIQPDICTYTT----LVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGF 502

Query: 175 C 175
           C
Sbjct: 503 C 503



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 87/157 (55%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL+L  ++  + ++P+++ YNTII   C +  ++EA  L+ ++    + P+ +T+  LI
Sbjct: 195 AALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALI 254

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC  G+M DAT +F+KM+ +    NV T++ L+DG+ K + +K A +V   M +  I 
Sbjct: 255 SGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIK 314

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           P++                 +A  +++++ + G+ P+
Sbjct: 315 PDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPN 351



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL+   ++   G   + ++Y T+I G C + +   A+QL  ++    ++PN + + 
Sbjct: 157 QIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYN 216

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID+ CK   +++A  ++S+M+ KG   +VVTY+ LI G+     MK A D++ +M   
Sbjct: 217 TIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFE 276

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI+PN+              R  EA  +   M++ GI PD    ++L D
Sbjct: 277 NINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMD 325



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 74/134 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALKL  ++ DRG+  D ITYN+I+   C  +++D+A+ L  K+    ++P+  T+T L+D
Sbjct: 406 ALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVD 465

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR++DA ++F  +L KG   +V  Y+ +I G+        + D+  +M EN   P
Sbjct: 466 GLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIP 525

Query: 131 NIAGRPTEAMQLYD 144
           N          L+D
Sbjct: 526 NAVTYEIIICSLFD 539



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +  +  ++   G EP++IT  T+I G C   ++ +A+Q  +K+  +    N +++  LI+
Sbjct: 126 SFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLIN 185

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+   A  +  ++  K  + NVV Y+ +ID   K + +  AFD+Y EM    ISP
Sbjct: 186 GLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISP 245

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +            I G+  +A  L++ M+   I P+    + L D
Sbjct: 246 DVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVD 290



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A  +   +  +G++PD+ TYN+++  YC +  +++A  +F  ++   + PN  
Sbjct: 294 KERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIH 353

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++I+I  FCK  ++D+A  +F +M       +VVTY+ LIDG  K   +  A  + +EM
Sbjct: 354 SYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEM 413

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  +  +               +  +A+ L   M   GI PD    +TL D
Sbjct: 414 HDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVD 465



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++ D G++PDI TY T++ G C   RL++A  +FE L       +
Sbjct: 432 LCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILD 491

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T +I  FC  G  D++  + SKM E G   N VTY  +I   F       A  +  
Sbjct: 492 VNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLR 551

Query: 122 EM 123
           EM
Sbjct: 552 EM 553



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H    + L  Q+   G+  D++  + +I  +  L +   +  +  K+  +  +PN
Sbjct: 82  LVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPN 141

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT T LI   C +G++  A     K++  G   N V+Y  LI+G  K     +A  +  
Sbjct: 142 VITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLR 201

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            +    + PN+    T            EA  LY  M+  GI PD      +  YN   S
Sbjct: 202 RVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD------VVTYNALIS 255

Query: 170 G 170
           G
Sbjct: 256 G 256



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  +  +P I  +  I+      N     V L  ++    +  + +  +ILI+ F + G+
Sbjct: 63  LHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQ 122

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI 132
              +  + +K+L+ G + NV+T + LI G      +  A   ++++       N +S   
Sbjct: 123 NPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGT 182

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   G+ + A+QL   +    + P+ ++ +T+ D
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIID 220


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  L  A +  G +   G++P+++TYNTII GYCS  R++ A  +F+ + C  +KP
Sbjct: 200 VLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKP 259

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +S T+   I   CKEG++++A+ M  KM E G +   VTY+ LIDGY    N++ AFD  
Sbjct: 260 DSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYR 319

Query: 121 EEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++M    + P ++             +  EA  +   M   G++PD +  + L +
Sbjct: 320 DKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILIN 374



 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  +  ++ + GL P  +TYNT+I GYC+   L+ A    +K+    L P   
Sbjct: 273 KEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVS 332

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI A   + +MD+A  +  +M EKG   + VTY+ LI+GY +  N+K AF +++EM
Sbjct: 333 TYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEM 392

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I P               GR  +A  L++ ++R GI PD ++ + L D
Sbjct: 393 ISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALID 444



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +C +D A  +  +++++GL PD +TYN +I GYC    + +A  L +++    ++P 
Sbjct: 341 LFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPT 400

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI    K GRM  A  +F K++ KG   +++ ++ LIDG+  + NM  AF + +
Sbjct: 401 RVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLK 460

Query: 122 EMCENNISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + P+       + GR  E     A +L + M   GI PD +  +TL
Sbjct: 461 EMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTL 512



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +  A  LF ++  +G+ PD+I +N +I G+C+   +D A  + +++  +++ P
Sbjct: 410 VLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVP 469

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF  L+   C+EG+++ A  +  +M  +G K + ++Y+ LI GY K  +MK AF V 
Sbjct: 470 DEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVR 529

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +EM     +P        I G         A QL   M+  GI P+
Sbjct: 530 DEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPN 575



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 18/178 (10%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +K    + A  L+ ++    ++  ++T+N +I   C   +L +A +    +  + +KP
Sbjct: 165 LFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKP 224

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  +I  +C  GR++ A M+F  M  +G K +  TY   I G  K   ++ A  + 
Sbjct: 225 NVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGML 284

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           E+M E  + P               G    A    D M+R G+MP      T++ YN+
Sbjct: 285 EKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMP------TVSTYNM 336



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LI+ C      D A + F  +  +G+ P +   N ++  +   NR ++A  L+ ++  +
Sbjct: 126 LLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRM 185

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           ++K + +TF I+I+  CKEG++  A      M   G K NVVTY+ +I GY     ++ A
Sbjct: 186 RIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGA 245

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +++ M    + P+              G+  EA  + + M   G+ P  +  +TL D
Sbjct: 246 RMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLID 304



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++AA +L  ++  RG++PD I+YNT+I GY     + +A ++ +++  +   P  +
Sbjct: 483 REGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLL 542

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+  LI   CK    D A  +  +M+ KG   N  TY  LI+G
Sbjct: 543 TYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEG 585



 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 12/139 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           + Y+ +I   C L R D+A + F+ +    + P+      ++  F K  R + A +++++
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAE 181

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           M     K++VVT++ +I+   K   +K A +    M    I PN+             GR
Sbjct: 182 MFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGR 241

Query: 136 PTEAMQLYDSMLRNGIMPD 154
              A  ++D M   G+ PD
Sbjct: 242 VEGARMIFDLMKCRGVKPD 260


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 105/185 (56%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H++ A  L+ ++  +G+ P+++TY+ +I G+  + +L +A+ LF K+    +KP+  
Sbjct: 89  KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGY 148

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FCK+ +M +   +F+ M+++G   +VVTY+ L+DGY   + + +A  ++  M
Sbjct: 149 TFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTM 208

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  ++P+I              +  +AM L++ M    I+P+ +  ++L D  L  SG 
Sbjct: 209 AQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLID-GLSKSGR 267

Query: 172 QEHCI 176
             + +
Sbjct: 268 ISYAL 272



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 2/131 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +F  +   G+ PDI +YN +I G+C + ++D+A+ LF ++ C  + PN
Sbjct: 194 LVKE--VNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPN 251

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID   K GR+  A  +  +M ++G   N++TY+ +ID  FK+  +  A  +  
Sbjct: 252 VVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALIT 311

Query: 122 EMCENNISPNI 132
           +  +  I P++
Sbjct: 312 KFKDQGIQPSM 322



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A     +L   G   D ++Y T+I G C +     A+ L +++    ++ N++ + 
Sbjct: 22  QIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYN 81

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I   CK+  ++DA  ++S+M+ KG   NVVTYS LI G+F    +K A D++ ++   
Sbjct: 82  TVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILE 141

Query: 127 NISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI P+       + G     +  E   ++  M++ GI+PD +  ++L D
Sbjct: 142 NIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVD 190



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 73/129 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +     +F  +  +G+ PD++TYN+++ GY  +  ++ A  +F  +    + P+  
Sbjct: 159 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIR 218

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI+ FCK  ++D A  +F++M  K    NVVTY+ LIDG  KS  +  A  + ++M
Sbjct: 219 SYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQM 278

Query: 124 CENNISPNI 132
            +  + PNI
Sbjct: 279 HDRGVPPNI 287



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  P+ IT NT+I G C   ++ +A    +KL  +    + +++  LI   CK G    A
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---------- 131
             +  ++  K  + N V Y+ +I G  K +++  AFD+Y EM    ISPN          
Sbjct: 62  LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121

Query: 132 --IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + G+  +A+ L++ ++   I PDG   + L D
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVD 155



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 71/116 (61%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  + + P+++TYN++I G     R+  A+QL +++    + PN +T+  
Sbjct: 233 VDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNS 292

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +IDA  K  ++D A  + +K  ++G + ++ TY+ LIDG  K   +K A +++E++
Sbjct: 293 IIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 53/87 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL+L  Q+ DRG+ P+I+TYN+II      +++D+A+ L  K     ++P+
Sbjct: 262 LSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPS 321

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM 88
             T+TILID  CK GR+ DA  +F  +
Sbjct: 322 MYTYTILIDGLCKGGRLKDARNIFEDL 348


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT+I GY  L  LDE  +L   +     +P+  
Sbjct: 148 KEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ILI+  CKEG++D+A  +F++ML+ G   N VT++ LI G+ K++ +  A ++Y++M
Sbjct: 208 TYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               +SP++             G   +   L D M+ NG+ PD +  +TL D
Sbjct: 268 LSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLID 319



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   LD   +L   +   G +PD+ TY+ +I G C   +LDEA +LF ++    L PN 
Sbjct: 182 IKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LI   CK  ++D A  ++ +ML +G   +++TY+ LI G  K   +K   D+ +E
Sbjct: 242 VTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDE 301

Query: 123 MCENNISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGLLLSTL 161
           M  N + P+       I G   E     A++L + M++  I  D +  + L
Sbjct: 302 MIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTAL 352



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A +LF ++ D GL P+ +T+ T+I G+C   ++D A+++++++    L P+
Sbjct: 216 LCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +     +  +M+  G K + ++Y+ LIDG  K  +++ A ++  
Sbjct: 276 LITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRN 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
           +M + +I   ++A           GR  +A ++   ML  G+ PD
Sbjct: 336 KMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPD 380



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L     L  ++   GL+PD I+Y T+I G C    L+ A++L  K+    ++ +
Sbjct: 286 LCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K ++ K+A  +  
Sbjct: 346 DVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLR 405

Query: 122 EMCENNISPNIA 133
           EM  +   P + 
Sbjct: 406 EMQRDGPVPGVV 417



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+ ++F  LI+ + 
Sbjct: 123 FYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYI 182

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
           K G +D+   + S M   G + +V TYS LI+G  K   +  A +++ EM +N + PN  
Sbjct: 183 KLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGV 242

Query: 132 -----IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                I G     +   AM++Y  ML  G+ PD +  +TL
Sbjct: 243 TFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTL 282



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ AL+L  ++    +  D + Y  +I   C   R  +A ++  ++  V LKP++ 
Sbjct: 323 KEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+     A+ +  +M   GP   VVT
Sbjct: 383 TYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT+I GY  L  LDE  +L   +     +P+  
Sbjct: 148 KEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ILI+  CKEG++D+A  +F++ML+ G   N VT++ LI G+ K++ +  A ++Y++M
Sbjct: 208 TYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               +SP++             G   +   L D M+ NG+ PD +  +TL D
Sbjct: 268 LSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLID 319



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   LD   +L   +   G +PD+ TY+ +I G C   +LDEA +LF ++    L PN 
Sbjct: 182 IKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LI   CK  ++D A  ++ +ML +G   +++TY+ LI G  K   +K   D+ +E
Sbjct: 242 VTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDE 301

Query: 123 MCENNISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGLLLSTL 161
           M  N + P+       I G   E     A++L + M++  I  D +  + L
Sbjct: 302 MIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTAL 352



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A +LF ++ D GL P+ +T+ T+I G+C   ++D A+++++++    L P+
Sbjct: 216 LCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +     +  +M+  G K + ++Y+ LIDG  K  +++ A ++  
Sbjct: 276 LITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRN 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
           +M + +I   ++A           GR ++A ++   ML  G+ PD
Sbjct: 336 KMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPD 380



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L     L  ++   GL+PD I+Y T+I G C    L+ A++L  K+    ++ +
Sbjct: 286 LCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K ++ K+A  +  
Sbjct: 346 DVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLR 405

Query: 122 EMCENNISPNIA 133
           EM  +   P + 
Sbjct: 406 EMQRDGPLPGVV 417



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+ ++F  LI+ + 
Sbjct: 123 FYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYI 182

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
           K G +D+   + S M   G + +V TYS LI+G  K   +  A +++ EM +N + PN  
Sbjct: 183 KLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGV 242

Query: 132 -----IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                I G     +   AM++Y  ML  G+ PD +  +TL
Sbjct: 243 TFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTL 282



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ AL+L  ++    +  D + Y  +I   C   R  +A ++  ++  V LKP++ 
Sbjct: 323 KEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+     A+ +  +M   GP   VVT
Sbjct: 383 TYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLID 319



 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G +P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYVPSVV 417



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HL+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
 gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
          Length = 213

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 12/162 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  L   +   GL P+IITYN++I G C   +L  AV LF KL    + PN IT+  
Sbjct: 25  IDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNT 84

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CKEG+  +A  +  KM+E+G +  V+TYS LI G      M+ A  + ++M ENN
Sbjct: 85  LIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENN 144

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLL 157
           + PN             +G   E  +LYD M   G++P   +
Sbjct: 145 VDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTNWI 186



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 71/122 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ LF +L  +G+ P+ ITYNT+I  YC   +  EA +L +K+    ++P 
Sbjct: 54  LCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPT 113

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ILI   C +G M++A  +  +M+E     N +TY  LI GY KS NM+    +Y+
Sbjct: 114 VITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYD 173

Query: 122 EM 123
           EM
Sbjct: 174 EM 175



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD  TY+++I G  +   +DEA  L + +    L PN IT+  LI   CK G++  A  +
Sbjct: 7   PDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNL 66

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           F+K+  KG   N +TY+ LID Y K      AF + ++M E  I P +            
Sbjct: 67  FNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCT 126

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            G   EA++L D M+ N + P+ +   TL    ++S   +E
Sbjct: 127 QGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEE 167



 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 35/59 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L  + +++ A+KL  Q+ +  ++P+ ITY T+I GY     ++E  +L++++    L P
Sbjct: 124 LCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 182


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    + P+  
Sbjct: 154 KEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +MLEKG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQM 273

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 274 LSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLID 325



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A KLF ++ ++GL P+ +T+ T+I G+C    +D A+++++++    L P+
Sbjct: 222 LCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK+G +  A  +  +M   G K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 LVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 342 MMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++  GL+PD ITY T+I G C    LD A +  + +    ++ +
Sbjct: 292 LCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S M   G   +V TYS LI+G  K   M  A  +++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM E  + PN              G    AM++Y  ML   ++PD
Sbjct: 237 EMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPD 281



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 56/103 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +    +    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTR 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +LDAA+ L  ++  + + P+I TYN++I G C L + ++   L  ++  + + PN
Sbjct: 213 LCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPN 272

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF+ILID  CKEG+++DA  +   M+EKG + +++TYS ++DGY     +  A  V+ 
Sbjct: 273 VHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFN 332

Query: 122 EMCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
            + +  I PNI                 +AMQL+  + + G+ PD +  ST+
Sbjct: 333 VLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTI 384



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 96/176 (54%), Gaps = 18/176 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A ++F  L D+G++P+I +Y+ +I GYC    L +A+QLF +++   LKP+++T++
Sbjct: 323 QVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYS 382

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++    + GR+ DA  +F +ML  GP  ++  +S L+ GYFK   ++ A  ++ ++  N
Sbjct: 383 TILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERN 442

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
               NI+             R  EA  +++ +   G++PD      +  YN+  +G
Sbjct: 443 REDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPD------VRTYNVMITG 492



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 12/160 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A ++   + ++G+EPDIITY+ I+ GYC   ++D A ++F  L    +KPN
Sbjct: 283 LCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPN 342

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +++ILI+ +CK+  +  A  +F ++ +KG K + VTYS ++ G  +   +  A  +++
Sbjct: 343 IFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFD 402

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRN 149
           EM     +P+I             G   EAM L+  + RN
Sbjct: 403 EMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERN 442



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 79/129 (61%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L  A++LFG+++ +GL+PD +TY+TI+ G   + R+ +A ++F+++  V   P+  
Sbjct: 355 KKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDIC 414

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             + L+  + K G +++A ++FSK+       N+  Y+ +I+G  K+  ++ A  ++E++
Sbjct: 415 LHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKL 474

Query: 124 CENNISPNI 132
               + P++
Sbjct: 475 PSIGLIPDV 483



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 65/122 (53%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ LF +L     + +I  Y  +I G C  +R+ EA  +FEKL  + L P+  T+ +
Sbjct: 429 VEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNV 488

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC+EG  D+   +  KM + G  AN +TY+ ++ G+F+S  +       +EM    
Sbjct: 489 MITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRG 548

Query: 128 IS 129
            S
Sbjct: 549 FS 550



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H +  L L   +     +PD+ TY+ +I   C    LD A+ L  ++    + PN
Sbjct: 178 LSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPN 237

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LID  CK G+ +    + S+M+      NV T+S LIDG  K   ++ A +V  
Sbjct: 238 IFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMR 297

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E  + P+I             G+   A ++++ +   GI P+    S L +
Sbjct: 298 HMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILIN 351



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L  E  +  A+ LF +L    + EP+ + Y T++ G       ++ + L   +     KP
Sbjct: 142 LFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKP 201

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  T++I+IDA CK+  +D A  + ++M +K    N+ TY+ LIDG  K    +    + 
Sbjct: 202 DVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLL 261

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EM   NI+PN+             G+  +A ++   M+  G+ PD +  S + D
Sbjct: 262 SEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMD 316



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 36/167 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +I   H  A + LF ++   G+       N +   YC  +R+D A  +        +  N
Sbjct: 72  MINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFN 131

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM--------------------------------- 88
            +TF  L+     E ++ DA ++F K+                                 
Sbjct: 132 VVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLL 191

Query: 89  --LEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
             +E+G  K +V TYS +ID   K  N+ +A ++  EM + NI PNI
Sbjct: 192 RIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNI 238



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 48/104 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +F +L   GL PD+ TYN +I G+C     DE   +  K+       N
Sbjct: 458 LCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPAN 517

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +IT+ +++  F +  ++ +      +M  +G   +  T   LI+
Sbjct: 518 NITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLIN 561



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ LF ++      P +I ++ +     ++      V LF ++  + +  +     I
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +++C   R+D A  +    L+ G   NVVT++ L+ G F    +  A  +++++    
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           I       P E M  Y +++ NG+   G    TL+   +   G+ +
Sbjct: 163 IC-----EPNEVM--YGTVM-NGLSKRGHTEKTLSLLRIMEQGNTK 200


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 97/173 (56%), Gaps = 12/173 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA+ LF ++  +G++  ++TYN+++ G C   + ++ VQL + +T  ++ PN ITF +
Sbjct: 221 IDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNV 280

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID F KEG++ +A  ++ +M+ KG   N +TY+ L+DGY     +  A ++ + M  NN
Sbjct: 281 LIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN 340

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            SP+I              R  E M+L+  + + G++ + +  S L     QS
Sbjct: 341 CSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQS 393



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 81/132 (61%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE  L  A +L+ ++  +G+ P+ ITYN+++ GYC  NRL EA  + + +      P
Sbjct: 284 VFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSP 343

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TFT LI  +CK  R+D+   +F K+ ++G  AN VTYS L+ G+ +S  ++ A +++
Sbjct: 344 DIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELF 403

Query: 121 EEMCENNISPNI 132
           +EM    + P++
Sbjct: 404 QEMVSLGVLPDV 415



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 96/183 (52%), Gaps = 13/183 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  A+ L  ++ + G +P+++TYN+I+ G C       A+ L  K+    +K +  T
Sbjct: 148 ESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFT 207

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ +ID+ C++G +D A  +F +M  KG K+++VTY+ L+ G  K+        + ++M 
Sbjct: 208 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMT 267

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQSSGS 171
              I PN+             G+  EA +LY  M+  GI P+ +  ++L D Y +Q+  S
Sbjct: 268 SRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLS 327

Query: 172 QEH 174
           + +
Sbjct: 328 EAN 330



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 85/142 (59%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PDI+T+ ++I GYC + R+DE ++LF K++   L  N++T++IL+  FC+ G+++ A  +
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEEL 402

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           F +M+  G   +V+TY  L+DG   +  ++ A +++E++ ++ ++ +I            
Sbjct: 403 FQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
            G+  +A  L+ S+   G+ P+
Sbjct: 463 GGKVEDAWNLFCSLPCKGVKPN 484



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C    A  + G++   G EPD  T+NT+I G C  +++ EAV L  ++     +PN +T+
Sbjct: 114 CKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTY 173

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +++  CK G    A  +  KM E+  KA+V TYS +ID   +   + +A  +++EM  
Sbjct: 174 NSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 233

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             I  ++            AG+  + +QL   M    I+P+ +  + L D  ++    QE
Sbjct: 234 KGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQE 293



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 67/116 (57%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL++F  L    +  DI+ Y  II G C   ++++A  LF  L C  +KPN +T+T+
Sbjct: 431 LEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 490

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +I   CK+G + +A ++  KM E G + N  TY+ LI  + +  ++ ++  + EEM
Sbjct: 491 MISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEM 546



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 75/124 (60%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF ++   G+ PD++TY  ++ G C   +L++A+++FE L   ++  + + +TI
Sbjct: 396 LEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTI 455

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK G+++DA  +F  +  KG K NV+TY+ +I G  K  ++  A  +  +M E+ 
Sbjct: 456 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 515

Query: 128 ISPN 131
             PN
Sbjct: 516 NEPN 519



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D  +KLF +++ RGL  + +TY+ ++ G+C   +L+ A +LF+++  + + P+ +T+ 
Sbjct: 360 RVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYG 419

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+D  C  G+++ A  +F  + +     ++V Y+ +I+G  K   ++ A++++  +   
Sbjct: 420 ILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCK 479

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            + PN+             G  +EA  L   M  +G  P+    +TL   +L+
Sbjct: 480 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLR 532



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+  +I T N +I  +C   +   A  +  K+  +  +P++ TF  LI+  C E ++ +A
Sbjct: 95  GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEA 154

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQ 141
            ++ ++M+E G + NVVTY+ +++G  KS +   A D+  +M E N+  ++    T    
Sbjct: 155 VVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYST---- 210

Query: 142 LYDSMLRNG 150
           + DS+ R+G
Sbjct: 211 IIDSLCRDG 219



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A  LF  L  +G++P+++TY  +I G C    L EA  L  K+     +PN  
Sbjct: 462 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDC 521

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+  LI A  ++G +  +  +  +M   G  A+  +   +ID
Sbjct: 522 TYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 563


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 99/206 (48%), Gaps = 47/206 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D AL++   +  +G E DI TYNTI  G C LNR +EA +    +    + PN++
Sbjct: 402 KKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAV 461

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF------ 117
           +FTI+ID  CKEG + +A  +F  M +KG K NVVTY+ LIDGY K   +K A+      
Sbjct: 462 SFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEM 521

Query: 118 -------DVY----------------------EEMCENNISPNIA------------GRP 136
                  D+Y                       E+C   ++ +I             GR 
Sbjct: 522 ESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRS 581

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLA 162
            EA +LYD M+  G+ PD  + ++L 
Sbjct: 582 EEAFRLYDEMMAAGLTPDDRVYTSLV 607



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A  L  ++T +G++P+++TYNT++  Y  +   +   ++   +   ++  N
Sbjct: 225 LCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYN 284

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T+LI+ +   G++ +A  +F KMLE+G +A++  ++ +I    K  NMK AF +++
Sbjct: 285 AATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFD 344

Query: 122 EMCENNISPN 131
           E+ E  +  N
Sbjct: 345 ELNERGLVAN 354



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F ++ +RG+E DI  + +II   C L  +  A  LF++L    L  N+ T+  LI 
Sbjct: 304 AEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIH 363

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF---DVYEEM-CEN 126
             C  G++D A M+ ++M  +G   N+V ++ LI+GY K   +  A    DV E+   EN
Sbjct: 364 GTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFEN 423

Query: 127 NISP--NIAG------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I     IAG      R  EA +   +M+  G+ P+ +  + + D
Sbjct: 424 DIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMID 468



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A  LF +L +RGL  +  TY  +I G C+  +LD A  L  ++    L  N + F 
Sbjct: 335 NMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFN 394

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+ +CK+G +D+A  M   M +KG + ++ TY+ +  G  K    + A      M E 
Sbjct: 395 TLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEK 454

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + PN              G   EA +++  M + G  P+ +  +TL D
Sbjct: 455 GVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLID 503



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 18/172 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ---LFEKLTCVQLKPNSIT 64
            +   K+F  +   GL+ D    + I+C   +L R D+ V     F+K+   ++     +
Sbjct: 161 FEEGFKVFDYMVHNGLKID--DRSCIVC-LLALKRSDQMVMSLGFFKKMVEFKVDVTVYS 217

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            TI+ID  CK+GR++ A  +  +M  KG K NVVTY+ L++ Y K  + +   ++   M 
Sbjct: 218 MTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLME 277

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            + +  N A            G+  EA ++++ ML  G+  D  + +++  +
Sbjct: 278 MDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISW 329



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 12/157 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +L  F ++ +  ++  + +   +I G C   R++ A  L  ++T   +KPN +T+  L++
Sbjct: 199 SLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVN 258

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K    +    M   M       N  TY+ LI+ Y  S  +  A  V+E+M E  +  
Sbjct: 259 AYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEA 318

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDG 155
           +I             G    A  L+D +   G++ + 
Sbjct: 319 DIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANA 355



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 56/107 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A +L  ++   G+  DI TY T++ G C   +++EA+ L  ++    L  + +
Sbjct: 507 KKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIV 566

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
           T+T +I    KEGR ++A  ++ +M+  G   +   Y+ L+    K+
Sbjct: 567 TYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHKT 613


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A+  F ++   G+ PD+ TY++I+ G+C+L R++EA  LF+++    + PN
Sbjct: 90  LCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPN 149

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFTILID  CK+  + +A ++F  M EKG + +V TY+ L+DGY     M  A  ++ 
Sbjct: 150 KVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFN 209

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M     +PN+            +GR  EA  L   M    + PD    STL     Q  
Sbjct: 210 IMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVG 269

Query: 170 GSQE 173
             QE
Sbjct: 270 RPQE 273



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  +F  +T++GLEPD+ TYN ++ GYCS +++DEA +LF  +      PN
Sbjct: 160 LCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPN 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+  CK GR+D+A  + ++M  K    ++ TYS L+ G+ +    + A ++ +
Sbjct: 220 VRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLK 279

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EMC   + PN+             G   EA +L  +M  + I P+  + + L +
Sbjct: 280 EMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIE 333



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL+P ++T+NT++ G CS  ++ +AV+LF+++  +  +P+ IT++ +I+  CK G    A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  KM EKG K NVV Y+ +ID   K + +  A D + EM +  I P++         
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               GR  EA  L+  M+   ++P+ +  + L D
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILID 158



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+KLF ++   G EPD+ITY+TII G C +     A+QL +K+     KPN + +  +ID
Sbjct: 29  AVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIID 88

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK+  + +A   FS+M+++G   +V TYS ++ G+     +  A  ++++M E N+ P
Sbjct: 89  SLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIP 148

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N       I G       +EA  ++++M   G+ PD    + L D
Sbjct: 149 NKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVD 193



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L  +++ + L PDI TY+T++ G+C + R  EA +L +++    L PN I
Sbjct: 232 KSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLI 291

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++I++D  CK G +D+A  +   M E   + N+  Y+ LI+G      +++A +++  +
Sbjct: 292 TYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNL 351

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
               I P +             G   EA +L+  M  NG +P+
Sbjct: 352 FVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPN 394



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 68/130 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A +L   + +  +EP+I  Y  +I G C+  +L+ A +LF  L    ++P 
Sbjct: 300 LCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPT 359

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T++I    K G  ++A  +F +M   G   N  TY+ +I G+ ++ +  +A  + E
Sbjct: 360 VVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIE 419

Query: 122 EMCENNISPN 131
           EM     S +
Sbjct: 420 EMVGKGFSAD 429



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA +LF  L  +G++P ++TY  +I G       +EA +LF ++      PNS T+ +
Sbjct: 341 LEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNV 400

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +I  F + G   +A  +  +M+ KG  A+  T+  L D
Sbjct: 401 IIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  L   +   GL P+IITYN++I G C   +L  AV LF KL    + PN IT+  
Sbjct: 751 IDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNT 810

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CKEG+  +A  +  KM+E+G +  V+TYS LI G      M+ A  + ++M ENN
Sbjct: 811 LIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENN 870

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           + PN             +G   E  +LYD M   G++P
Sbjct: 871 VDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 908



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + AL L+ +   RGL  ++IT+NT+I G C + R+ EA +L +++  ++  P+
Sbjct: 474 LFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPD 533

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T+  L D +CK G++  AT + +KM   G   +V  ++  I G+F ++      D++ 
Sbjct: 534 SLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHS 593

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    +SPN+             G   EA  LY  M+ NG+ P+  + S L
Sbjct: 594 EMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSAL 645



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 73/129 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ LF +L  +G+ P+ ITYNT+I  YC   +  EA +L +K+    ++P 
Sbjct: 780 LCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPT 839

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ILI   C +G M++A  +  +M+E     N +TY  LI GY KS NM+    +Y+
Sbjct: 840 VITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYD 899

Query: 122 EMCENNISP 130
           EM    + P
Sbjct: 900 EMHIRGLLP 908



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  LF  L ++   PD  TY+++I G  +   +DEA  L + +    L PN
Sbjct: 710 LCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPN 769

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK G++  A  +F+K+  KG   N +TY+ LID Y K      AF + +
Sbjct: 770 IITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQ 829

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E  I P +             G   EA++L D M+ N + P+ +   TL    ++S 
Sbjct: 830 KMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSG 889

Query: 170 GSQE 173
             +E
Sbjct: 890 NMEE 893



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++  ++ D G+  ++  YNT+I G C L R++E  ++ +++  V ++P+  ++  
Sbjct: 340 MDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNT 399

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +C+EG M  A  M   M+  G  A  +TY+ L+ G+     +  A  ++  M +  
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++PN             AG+  +A+ L+   L  G+  + +  +T+
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTV 505



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++   K+  ++ D G+ PD  +YNT+I GYC    + +A ++   +    L   
Sbjct: 369 LCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAAT 428

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  L+  FC    +DDA  ++  ML++G   N ++ S L+DG FK+   + A ++++
Sbjct: 429 TLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWK 488

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E     ++ N+             GR  EA +L D M      PD L   TL D
Sbjct: 489 ETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFD 542



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +  A++   ++   GLE +++ Y+ ++  YC +   ++A ++ E L    L PN +
Sbjct: 230 RDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVV 289

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           T+T+L+  +CK+GRM++A  +  +M E G    + V Y  +I+GY +   M  A  V  E
Sbjct: 290 TYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNE 349

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M +  I  N+             GR  E  ++   M   G+ PD    +TL D
Sbjct: 350 MRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           + +N II G C   R+ +A  LFE L   +  P++ T++ LI      G +D+A  +   
Sbjct: 701 VMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDV 760

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGR 135
           ML  G   N++TY+ LI G  KS  +  A +++ ++    ISPN              G+
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGK 820

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            TEA +L   M+  GI P  +  S L  Y L + G  E  I
Sbjct: 821 TTEAFKLKQKMVEEGIQPTVITYSILI-YGLCTQGYMEEAI 860



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 14/186 (7%)

Query: 4   KECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K+  ++ A ++  ++ + G +  D + Y  +I GYC   R+D+A ++  ++    +  N 
Sbjct: 300 KDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNL 359

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I+  CK GRM++   +  +M + G + +  +Y+ LIDGY +  +M+ AF++   
Sbjct: 360 FVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRM 419

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M  N ++       T            +A++L+  ML+ G+ P+ +  STL D  L  +G
Sbjct: 420 MVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLD-GLFKAG 478

Query: 171 SQEHCI 176
             E  +
Sbjct: 479 KTEQAL 484



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  ++GQ+   G+ PD  T   +   YC   R+ +AV+  E++  + L+ N + +  ++D
Sbjct: 202 AAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMD 261

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            +C  G  +DA  +   +  KG   NVVTY+ L+ GY K   M+ A  V +EM E
Sbjct: 262 CYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKE 316



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 38/198 (19%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-- 61
           KE +L  A  L+ ++ + G+ P++   + ++  +    ++DEA  + +KL  + + P   
Sbjct: 616 KEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS 675

Query: 62  ------------------------SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
                                   ++ + ++I   CK GR+ DA  +F  +  K    + 
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDS 145
            TYS LI G   S ++  AF + + M    ++PNI            +G+ + A+ L++ 
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK 795

Query: 146 MLRNGIMPDGLLLSTLAD 163
           +   GI P+G+  +TL D
Sbjct: 796 LQSKGISPNGITYNTLID 813



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 39/201 (19%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +  +++ RGL P+++TY  +I G+C    L EA  L+ ++    + PN    + L+  F 
Sbjct: 591 IHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFY 650

Query: 74  KEGRMDDATMMFSKML--------------------------EKGPKANVVTYSCLIDGY 107
           KEG++D+A ++  K++                          +  P +  V ++ +I G 
Sbjct: 651 KEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGL 710

Query: 108 FKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
            KS  +  A  ++E +      P+             +G   EA  L D ML  G+ P+ 
Sbjct: 711 CKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNI 770

Query: 156 LLLSTLADYNLQSSGSQEHCI 176
           +  ++L  Y L  SG     +
Sbjct: 771 ITYNSLI-YGLCKSGKLSRAV 790



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A  L  ++   G  P +  +N+ I G+    +  +   +  +++   L PN +T+ 
Sbjct: 549 QLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYG 608

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  +CKEG + +A  ++ +M+  G   NV   S L+  ++K   +  A  V +++   
Sbjct: 609 ALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI 668

Query: 127 NISP 130
           ++ P
Sbjct: 669 DMIP 672



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 12/156 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L +AL +F  +   G  P + + N ++           A  ++ ++    + P+  T  
Sbjct: 163 QLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVA 222

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+  A+C++GR+  A     +M   G + N+V Y  ++D Y      + A  + E +   
Sbjct: 223 IMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRK 282

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNG 150
            +SPN+             GR  EA ++   M   G
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETG 318



 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  + +++ A+KL  Q+ +  ++P+ ITY T+I GY     ++E  +L++++    L P 
Sbjct: 850 LCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPT 909

Query: 62  S 62
           +
Sbjct: 910 N 910


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+  A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++A +  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ IT+T LID
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM    + P
Sbjct: 320 GSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKP 379

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMP 153
            I             G      +L   M R+G +P
Sbjct: 380 EIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 72/132 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A++  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYVPSVV 417



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVVLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ AL+   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 135 KEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVY 194

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML+KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 195 TYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 255 LSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLID 306



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 203 LCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L    CK+G +  A  +  +M  KG K + +TY+ LIDG  K  +M++AF+  +
Sbjct: 263 LITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQK 322

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ P+
Sbjct: 323 RMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPN 367



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 98  LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPS 157

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + + M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 158 VVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 217

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM +  + PN              GR   AM++Y  ML   + PD +  +TL  Y L   
Sbjct: 218 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLT-YGLCKK 276

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 277 GDLKQAH 283



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 67/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    ++ A +  +++    ++ +
Sbjct: 273 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLD 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K N  TY+ +I+ + K  ++ +   + +
Sbjct: 333 DVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLK 392

Query: 122 EM 123
           EM
Sbjct: 393 EM 394


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  ALK+F +L ++GL PD+ TY+++I G+C    +++A +L +++    + PN
Sbjct: 335 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+D  CK G +  A  +F  M EKG + + VTYS +IDGY KS+N+  AF ++ 
Sbjct: 395 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 454

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + P+              G   +AM L+  ML+ G     L  +TL D   +S 
Sbjct: 455 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT-LSFNTLIDGYCKSC 513

Query: 170 GSQE 173
             QE
Sbjct: 514 KIQE 517



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A K F ++ D GL P+   Y  +I G+     L EA+ +F  L  + + P+  
Sbjct: 267 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQ 326

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T +  I    K GR+ +A  +FS++ EKG   +V TYS LI G+ K   ++ AF++++EM
Sbjct: 327 TCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 386

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           C   I+PNI            +G    A +L+D M   G+ PD +  ST+ D   +S   
Sbjct: 387 CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENV 446

Query: 172 QE 173
            E
Sbjct: 447 AE 448



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A KL  ++T  GL+P+++ Y+T+I GY S  R++EA +L + ++C  + P+ 
Sbjct: 161 CHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDI 220

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I    K G+M++A+    ++  +G K + VT+   I GY K+  M  A   ++E
Sbjct: 221 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 280

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M ++ + PN             AG   EA+ ++  +   G++PD
Sbjct: 281 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPD 324



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  ++ A +L   ++  G+ PDI  YN II       +++EA     ++    LKP+++T
Sbjct: 198 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 257

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F   I  + K G+M +A   F +ML+ G   N   Y+ LI+G+FK+ N+  A  ++  + 
Sbjct: 258 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLH 317

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              + P++             GR  EA++++  +   G++PD    S+L
Sbjct: 318 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 366



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++E  +D  L++   +   G+  ++ITYN +I G C   ++++A ++ + +  +  KPN
Sbjct: 55  FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 114

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S TF +LI+ +C+E  M  A  +  +M ++    + V+Y  +I+G    +++  A  + E
Sbjct: 115 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 174

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M  + + PN+             GR  EA +L D M  +G+ PD
Sbjct: 175 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPD 219



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 30/188 (15%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A+ LF ++  +G     +++NT+I GYC   ++ EA QLF+++   Q+ P+ +
Sbjct: 477 KEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHV 535

Query: 64  TFTILIDAFCKEGRMDDATMMFS-----------------KMLEKGPKANVVTYSCLIDG 106
           T+T +ID  CK G+M++A ++F                  KM+ KG K + VTY  +I  
Sbjct: 536 TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYA 595

Query: 107 YFKSQNMKSAFDVYEEMCENNISPN----------IAGRP--TEAMQLYDSMLRNGIMPD 154
           + K  N+  AF + +E+    +             +  R   TEA +L D M   G+ P 
Sbjct: 596 HCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPS 655

Query: 155 GLLLSTLA 162
               STL 
Sbjct: 656 LAACSTLV 663



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++  AL+L  ++  R L P  ++Y  +I G C    L  A +L EK+T   LKPN +
Sbjct: 127 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 186

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LI  +  EGR+++A  +   M   G   ++  Y+ +I    K+  M+ A     E+
Sbjct: 187 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 246

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               + P+              G+ TEA + +D ML +G+MP+  L + L + + ++   
Sbjct: 247 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 306

Query: 172 QE 173
            E
Sbjct: 307 ME 308



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K  +L  AL +F  L   G+ PD+ T +  I G     R+ EA+++F +L    L P+ 
Sbjct: 301 FKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 360

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++ LI  FCK+G ++ A  +  +M  KG   N+  Y+ L+DG  KS +++ A  +++ 
Sbjct: 361 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 420

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLA 162
           M E  + P+     T            EA  L+  M   G+ P   + + L 
Sbjct: 421 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 29/199 (14%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA----------------- 46
           K C +  A +LF ++  + + PD +TY T+I  +C   +++EA                 
Sbjct: 511 KSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV 570

Query: 47  VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             LFEK+    +KP+ +T+ ++I A CKE  + +A  +  +++ KG       +  LI  
Sbjct: 571 FALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITA 630

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             K +++  A  + +EM E  + P++            AG+  EA ++++ +   G++PD
Sbjct: 631 LCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 690

Query: 155 GLLLSTLADYNLQSSGSQE 173
              L  L + NL  + S++
Sbjct: 691 TTTLIDLVNGNLNDTDSED 709



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 47/191 (24%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP----------------- 60
           + ++GL P+  TY  I  G C   R++EA   FE++    LKP                 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 61  ------------------NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
                             N IT+ +LI   CK G+M+ A  +   M+  G K N  T+  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP------------TEAMQLYDSMLRNG 150
           LI+GY +  NM  A ++ +EM + N+ P+                 + A +L + M  +G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 151 IMPDGLLLSTL 161
           + P+ ++ STL
Sbjct: 181 LKPNVVVYSTL 191



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 61/120 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +L  A KL  ++  +G+      ++ +I   C    L EA +L +++  + LKP+  
Sbjct: 598 KEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLA 657

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             + L+ +F + G+MD+AT +F  +   G   +  T   L++G     + + A ++ +++
Sbjct: 658 ACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 717



 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 46/88 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KL  ++ + GL+P +   +T++  +    ++DEA ++FE +  + L P+
Sbjct: 631 LCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 690

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML 89
           + T   L++    +   +DA  +  +++
Sbjct: 691 TTTLIDLVNGNLNDTDSEDARNLIKQLV 718


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y 
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYX 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLID 319



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A++++ ++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRK 335

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G +P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 XVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYVPSVV 417



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYXQMLSQSLSPDLITYNTL 282



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +   +T  GL P ++++NT+I GY  L  LDE  +L   +    ++P+  
Sbjct: 146 KEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVY 205

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML+KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 206 TYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 265

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 266 LSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLID 317



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D+G+ P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 214 LCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 273

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  +G K + +TY+ LIDG  K  +M++AF+  +
Sbjct: 274 LITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQK 333

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ P+
Sbjct: 334 RMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPN 378



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +   +T   L+P+
Sbjct: 109 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPS 168

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  LI+ + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 169 VVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 228

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 229 EMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 280


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  ALK+F +L ++GL PD+ TY+++I G+C    +++A +L +++    + PN
Sbjct: 534 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPN 593

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+D  CK G +  A  +F  M EKG + + VTYS +IDGY KS+N+  AF ++ 
Sbjct: 594 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 653

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + P+              G   +AM L+  ML+ G     L  +TL D   +S 
Sbjct: 654 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT-LSFNTLIDGYCKSC 712

Query: 170 GSQE 173
             QE
Sbjct: 713 KIQE 716



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A K F ++ D GL P+   Y  +I G+     L EA+ +F  L  + + P+  
Sbjct: 466 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQ 525

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T +  I    K GR+ +A  +FS++ EKG   +V TYS LI G+ K   ++ AF++++EM
Sbjct: 526 TCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 585

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           C   I+PNI            +G    A +L+D M   G+ PD +  ST+ D
Sbjct: 586 CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMID 637



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 13/166 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A+ LF ++  +G     +++NT+I GYC   ++ EA QLF+++   Q+ P+ +
Sbjct: 676 KEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHV 734

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID  CK G+M++A ++F +M E+    + VTY+ L+ GY K       F ++E+M
Sbjct: 735 TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 794

Query: 124 CENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLL 157
               + P+                  EA +L D ++  G++  G +
Sbjct: 795 VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI 840



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A KL  ++T  GL+P+++ Y+T+I GY S  R++EA +L + ++C  + P+ 
Sbjct: 360 CHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDI 419

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I    K G+M++A+    ++  +G K + VT+   I GY K+  M  A   ++E
Sbjct: 420 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 479

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M ++ + PN             AG   EA+ ++  +   G++PD
Sbjct: 480 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPD 523



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  ++ A +L   ++  G+ PDI  YN II       +++EA     ++    LKP+++T
Sbjct: 397 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 456

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F   I  + K G+M +A   F +ML+ G   N   Y+ LI+G+FK+ N+  A  ++  + 
Sbjct: 457 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLH 516

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              + P++             GR  EA++++  +   G++PD    S+L
Sbjct: 517 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 565



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++E  +D  L++   +   G+  ++ITYN +I G C   ++++A ++ + +  +  KPN
Sbjct: 254 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 313

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S TF +LI+ +C+E  M  A  +  +M ++    + V+Y  +I+G    +++  A  + E
Sbjct: 314 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 373

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M  + + PN+             GR  EA +L D M  +G+ PD
Sbjct: 374 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPD 418



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++  AL+L  ++  R L P  ++Y  +I G C    L  A +L EK+T   LKPN +
Sbjct: 326 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 385

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LI  +  EGR+++A  +   M   G   ++  Y+ +I    K+  M+ A     E+
Sbjct: 386 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 445

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               + P+              G+ TEA + +D ML +G+MP+  L + L + + ++   
Sbjct: 446 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 505

Query: 172 QE 173
            E
Sbjct: 506 ME 507



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K  +L  AL +F  L   G+ PD+ T +  I G     R+ EA+++F +L    L P+ 
Sbjct: 500 FKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 559

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++ LI  FCK+G ++ A  +  +M  KG   N+  Y+ L+DG  KS +++ A  +++ 
Sbjct: 560 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 619

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLA 162
           M E  + P+     T            EA  L+  M   G+ P   + + L 
Sbjct: 620 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 671



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A  LF ++ +R L  D +TY +++ GY  L +  E   LFEK+    +KP+ +
Sbjct: 745 KAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 804

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ++I A CKE  + +A  +  +++ KG       +  LI    K +++  A  + +EM
Sbjct: 805 TYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 864

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  + P++            AG+  EA ++++ +   G++PD   L  L + NL  + S
Sbjct: 865 GELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDS 924

Query: 172 QE 173
           ++
Sbjct: 925 ED 926



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 47/191 (24%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP----------------- 60
           + ++GL P+  TY  I  G C   R++EA   FE++    LKP                 
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 61  ------------------NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
                             N IT+ +LI   CK G+M+ A  +   M+  G K N  T+  
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP------------TEAMQLYDSMLRNG 150
           LI+GY +  NM  A ++ +EM + N+ P+                 + A +L + M  +G
Sbjct: 320 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 379

Query: 151 IMPDGLLLSTL 161
           + P+ ++ STL
Sbjct: 380 LKPNVVVYSTL 390



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 61/120 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +L  A KL  ++  +G+      ++ +I   C    L EA +L +++  + LKP+  
Sbjct: 815 KEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLA 874

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             + L+ +F + G+MD+AT +F  +   G   +  T   L++G     + + A ++ +++
Sbjct: 875 ACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 934



 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 46/88 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KL  ++ + GL+P +   +T++  +    ++DEA ++FE +  + L P+
Sbjct: 848 LCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 907

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML 89
           + T   L++    +   +DA  +  +++
Sbjct: 908 TTTLIDLVNGNLNDTDSEDARNLIKQLV 935



 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 22/106 (20%)

Query: 63  ITFTILIDAFCKEGRMDDATMMF------------------SKMLEKGPKANVVTYSCLI 104
           + F ILID++ + G +D+A  +F                    M EKG   N  TY+ + 
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNG 150
            G  +++ M  A   +EEM +  + P+          L D  +R G
Sbjct: 217 AGLCRAKRMNEAKLTFEEMQKTGLKPDY----NACSALIDGFMREG 258


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 319



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ SAF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRK 335

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
            M + NI  +              GR  +A ++   ML  G+ PD 
Sbjct: 336 RMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDA 381



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T L    C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 346 EVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGHVPSVV 417



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 111 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 171 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 231 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +   ++    +  D + Y  +  G C   R  +A ++  ++  V LKP++ 
Sbjct: 323 KEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDAR 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  ALK+F +L ++GL PD+ TY+++I G+C    +++A +L +++    + PN
Sbjct: 623 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPN 682

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+D  CK G +  A  +F  M EKG + + VTYS +IDGY KS+N+  AF ++ 
Sbjct: 683 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 742

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + P+              G   +AM L+  ML+ G     L  +TL D   +S 
Sbjct: 743 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATT-LSFNTLIDGYCKSC 801

Query: 170 GSQE 173
             QE
Sbjct: 802 KIQE 805



 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A K F ++ D GL P+   Y  +I G+     L EA+ +F +L  + + P+  
Sbjct: 555 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQ 614

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T +  I    K GR+ +A  +FS++ EKG   +V TYS LI G+ K   ++ AF++++EM
Sbjct: 615 TCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 674

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           C   I+PNI            +G    A +L+D M   G+ PD +  ST+ D
Sbjct: 675 CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMID 726



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 13/164 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A+ LF ++  +G     +++NT+I GYC   ++ EA QLF+++   Q+ P+ +
Sbjct: 765 KEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHV 823

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID  CK G+M++A ++F +M E+    + VTY+ L+ GY K       F ++E+M
Sbjct: 824 TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 883

Query: 124 CENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDG 155
               + P+                  EA +L D ++  G++  G
Sbjct: 884 VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG 927



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A KL  ++T  GL+P+++ Y+ +I  Y S  R++EA +L + ++C  + P+ 
Sbjct: 449 CHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDI 508

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I    K G+M++A+    ++  +G K + VT+   I GY K+  M  A   ++E
Sbjct: 509 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 568

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M ++ + PN             AG   EA+ ++  +   G++PD
Sbjct: 569 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPD 612



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  ++ A +L   ++  G+ PDI  YN II       +++EA     ++    LKP+++T
Sbjct: 486 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 545

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F   I  + K G+M +A   F +ML+ G   N   Y+ LI+G+FK+ N+  A  ++  + 
Sbjct: 546 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLH 605

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              + P++             GR  EA++++  +   G++PD    S+L
Sbjct: 606 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 654



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++  AL+L  ++  R L P  ++Y  +I G C    L  A +L EK+T   LKPN +
Sbjct: 415 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 474

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ILI A+  EGR+++A  +   M   G   ++  Y+ +I    K+  M+ A     E+
Sbjct: 475 VYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 534

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               + P+              G+ TEA + +D ML +G+MP+  L + L + + ++   
Sbjct: 535 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 594

Query: 172 QE 173
            E
Sbjct: 595 ME 596



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++E  +D  L++   +   G+  ++ITYN +I G C   ++++A ++ + +  +  KPN
Sbjct: 343 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPN 402

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S TF +LI+ +C+E  M  A  +  +M ++    + V+Y  +I+G    +++  A  + E
Sbjct: 403 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 462

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M  + + PN+             GR  EA +L D M  +G+ PD
Sbjct: 463 KMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPD 507



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K  +L  AL +F +L   G+ PD+ T +  I G     R+ EA+++F +L    L P+ 
Sbjct: 589 FKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 648

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++ LI  FCK+G ++ A  +  +M  KG   N+  Y+ L+DG  KS +++ A  +++ 
Sbjct: 649 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 708

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLA 162
           M E  + P+     T            EA  L+  M   G+ P   + + L 
Sbjct: 709 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 760



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   ++ A  LF ++ +R L  D +TY +++ GY  L +  E   LFEK+    +KP+ +
Sbjct: 834  KAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 893

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+ ++I A CKE  + +A  +  +++ KG       +  LI    K +++  A  + +EM
Sbjct: 894  TYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 953

Query: 124  CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             E  + P++            AG+  EA ++++ +   G++PD   L  L + NL  + S
Sbjct: 954  GELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDS 1013

Query: 172  QE 173
            ++
Sbjct: 1014 ED 1015



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L   + ++GL P+  TY  I  G C   R++EA   FE++    LKP+    + 
Sbjct: 279 IDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSA 338

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID F +EG +D+   +   M+  G   N++TY+ LI G  K   M+ A ++ + M    
Sbjct: 339 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLG 398

Query: 128 ISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGL 156
             PN       I G   E     A++L D M +  ++P  +
Sbjct: 399 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAV 439



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 68/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++  ++ ++GL P+   Y+ +I G C +  +DEAV+L   +    L PN
Sbjct: 238 LCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPN 297

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+TI+    C+  RM++A + F +M + G K +    S LIDG+ +  ++     + +
Sbjct: 298 TYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKD 357

Query: 122 EMCENNISPNI 132
            M    I  N+
Sbjct: 358 VMVSCGIPINL 368



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++   K++  + D  +  D+ TY  ++   C    L  A ++  ++    L PN
Sbjct: 203 LLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPN 262

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++++I+  C+ G +D+A  +   M EKG   N  TY+ +  G  +++ M  A   +E
Sbjct: 263 EFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFE 322

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNG 150
           EM +  + P+          L D  +R G
Sbjct: 323 EMQKTGLKPDY----NACSALIDGFMREG 347



 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 60/120 (50%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            KE +L  A KL  ++  +G+      ++ +I   C    L EA +L +++  + LKP+  
Sbjct: 904  KEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLA 963

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
                L+ +F + G+MD+AT +F  +   G   +  T   L++G     + + A ++ +++
Sbjct: 964  ACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 1023



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 46/88 (52%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L  A KL  ++ + GL+P +   NT++  +    ++DEA ++FE +  + L P+
Sbjct: 937  LCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 996

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKML 89
            + T   L++    +   +DA  +  +++
Sbjct: 997  TTTLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score = 39.3 bits (90), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 22/144 (15%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI-----LIDAFCKEGRMDDAT 82
           + ++ +I  Y  +  LDEA  +F        K +SI  ++     L+    K G M+   
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVF-----FVAKNDSILISLIRCNSLLKDLLKCGMMELFW 213

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----------- 131
            +++ ML+     +V TY+ L+    K+ +++ A  V  EM E  ++PN           
Sbjct: 214 KVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGM 273

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPD 154
              G   EA++L  SM   G++P+
Sbjct: 274 CQVGDIDEAVELKRSMGEKGLVPN 297


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 96/165 (58%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++PDI TY+++I G+C  +RLDEA  +FE +      PN
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI  FCK  R+++   +F +M ++G   N VTY+ LI G+F++++  +A  V++
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 457

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M    + PNI             G+  +AM +++ + R+ + PD
Sbjct: 458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 502



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL L  ++    +E D++ YNTII G C    +D+A+ LF ++    ++P+
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LI   C  GR  DA+ + S M+E+    NVVT+S LID + K   +  A  +Y+
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I P+I              R  EA  +++ M+     P+ +  STL
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  Q+  RG +PD++TY T++ G C    +D A+ L +K+   +++ + + +  +ID
Sbjct: 207 AVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIID 266

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   MDDA  +F++M  KG + +V TYS LI           A  +  +M E  I+P
Sbjct: 267 GLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINP 326

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G+  EA +LYD M++  I PD    S+L
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369



 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++ ++G+ PD+ TY+++I   C+  R  +A +L   +   ++ PN
Sbjct: 268 LCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPN 327

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            +TF+ LIDAF KEG                                   R+D+A  MF 
Sbjct: 328 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 387

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT--------- 137
            M+ K    NVVTYS LI G+ K++ ++   +++ EM +  +  N     T         
Sbjct: 388 LMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 447

Query: 138 ---EAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A  ++  M+  G+ P+ L  + L D
Sbjct: 448 DCDNAQMVFKQMVSVGVHPNILTYNILLD 476



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G +PD  T+ T+I G    N+  EAV L +++     +P+ 
Sbjct: 164 CHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 223

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +++  CK G +D A  +  KM +   +A+VV Y+ +IDG  K ++M  A +++ E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P++             GR ++A +L   M+   I P+ +  S L D
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID 336



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  ++LF +++ RGL  + +TY T+I G+      D A  +F+++  V + PN +
Sbjct: 410 KAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 469

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+D  CK G++  A ++F  +     + ++ TY+ +I+G  K+  ++  ++++  +
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               +SPN+             G   EA  L   M  +G +P+    +TL    L+
Sbjct: 530 SLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLR 585



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  +F Q+   G+ P+I+TYN ++ G C   +L +A+ +FE L    ++P+  T+ I+
Sbjct: 450 DNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIM 509

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG   NV+ Y+ +I G+ +  + + A  + ++M E+  
Sbjct: 510 IEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGP 569

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            PN     T    L  + LR+G
Sbjct: 570 LPNSGTYNT----LIRARLRDG 587



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LFG +      P I+ +N ++     +N+ +  + L E++  + +  +  T++I
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I+ FC+  ++  A  + +KM++ G + ++VT S L++GY  S+ +  A  + ++M E  
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P+            +  + +EA+ L D M++ G  PD +   T+ +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ +F  L    +EPDI TYN +I G C   ++++  +LF  L+   + PN
Sbjct: 478 LCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPN 537

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +  +I  FC++G  ++A  +  KM E GP  N  TY+ LI    +  + +++ ++ +
Sbjct: 538 VIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIK 597

Query: 122 EM 123
           EM
Sbjct: 598 EM 599



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +LF  L+ +G+ P++I YNT+I G+C     +EA  L +K+      PNS 
Sbjct: 515 KAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSG 574

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+  LI A  ++G  + +  +  +M   G   +  T
Sbjct: 575 TYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 610


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F ++  RGL P  +++NT+I G C    LDE  +L + +   ++ P+  
Sbjct: 235 KEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVF 294

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI   CKEGR+D A  +F +M ++G + N +T++ LIDG ++S+ M SA + Y +M
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQM 354

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P++             G   +A +L D M   G+ PD +  +TL D
Sbjct: 355 LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLID 406



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 47/214 (21%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D+A+  + Q+   G++PD++ YNT++ G C +  +++A +L +++  V +KP+ IT+T
Sbjct: 343 RMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYT 402

Query: 67  ILIDAFCKE-----------------------------------GRMDDATMMFSKMLEK 91
            LID +CKE                                   GR+ DA     +M+E 
Sbjct: 403 TLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA 462

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G K +  TY+ +IDGY K  N+K  F + +EM  N   P +             G+   A
Sbjct: 463 GMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA 522

Query: 140 MQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             L ++ML  G+ PD +  + L + + ++  +++
Sbjct: 523 NMLLEAMLNLGVTPDDITYNILLEGHCKNGKAED 556



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A +LF ++  RGL P+ IT+  +I G     R+D A+  + ++  + +KP+
Sbjct: 303 LCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPD 362

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L++  CK G ++ A  +  +M   G K + +TY+ LIDGY K  +++SA ++ +
Sbjct: 363 LVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRK 422

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E  +   N+A           GR  +A +    M+  G+ PD    + + D
Sbjct: 423 GMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVID 476



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD   +L   + +  + PD+ TY+ +I G C   RLD A QLF+++    L+PN
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPN 327

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITFT LID   +  RMD A   + +ML  G K ++V Y+ L++G  K  ++  A  + +
Sbjct: 328 GITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVD 387

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P+              G    AM++   M   G++ D +  + L
Sbjct: 388 EMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTAL 439



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 12/121 (9%)

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P    + ILI+ FCKEG + DA ++F+++ ++G +   V+++ LI+G  KS+N+   F +
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRL 280

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            + M EN I P++             GR   A QL+D M + G+ P+G+  + L D   +
Sbjct: 281 KKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYR 340

Query: 168 S 168
           S
Sbjct: 341 S 341



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            + ++ + G  P +  YN +I  +C    + +A  +F ++    L+P +++F  LI+  C
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
           K   +D+   +   M E     +V TYS LI G  K   +  A  +++EM +  + PN  
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 132 -----IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                I G     R   AM  Y  ML  G+ PD ++ +TL
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTL 369


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML+KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLID 319



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   C++G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRK 335

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ PD
Sbjct: 336 RMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPD 380



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 72/132 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  +  +ML  G K + +TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGQMPSVV 417



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F  +T   L+P+
Sbjct: 111 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + + M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 53/96 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    ++ D + Y  +I G C   R  +A ++  ++  V LKP++I
Sbjct: 323 KEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTI 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   + A+  F ++ D+G+ P+++TY++I+ G+C+L +L+EA  LF+++    + PN
Sbjct: 221 LCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPN 280

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
           ++TFTIL+D  CKEG                                   +MD+A  +F 
Sbjct: 281 TVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFD 340

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ KG   +V  Y+ LI+G+ KS+ +  A  +  EM + +++P+             AG
Sbjct: 341 IMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAG 400

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           RP  A +L+  M   G++PD +  S L D
Sbjct: 401 RPQVAQKLFKEMCSYGLLPDSITYSILLD 429



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 13/171 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+KLF ++   G  P +ITY TII G C +     A+QL +K+     KP+ + +  +ID
Sbjct: 160 AVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVID 219

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK+ R ++A   FS+M+++G   NVVTYS ++ G+     +  A  ++++M   N+ P
Sbjct: 220 SLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMP 279

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           N              G   EA ++++ M  NG+ PD    S L D Y LQS
Sbjct: 280 NTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQS 330



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  A    G++   GL+P  +T+ T++ G CS  ++ +AV+LF+++  +   P+ IT+T
Sbjct: 121 HVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYT 180

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I   CK G   +A  +  KM EKG K +VV Y+ +ID   K +    A   + EM + 
Sbjct: 181 TIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQ 240

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I PN+             G+  EA  L+  M+   +MP+ +  + L D
Sbjct: 241 GIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVD 289



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 21/186 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   AL+L  ++ ++G +PD++ YNT+I   C   R +EA+  F ++    + PN
Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN 245

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ ++  FC  G++++AT +F +M+ +    N VT++ L+DG  K   +  A  V+E
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFE 305

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M EN + P+            +  +  EA +L+D M+  G  P      ++  YN+  +
Sbjct: 306 MMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAP------SVRVYNILIN 359

Query: 170 GSQEHC 175
           G   HC
Sbjct: 360 G---HC 362



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 12/183 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +  +D A KLF  +  +G  P +  YN +I G+C   RL+EA  L  ++    L P+++T
Sbjct: 329 QSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVT 388

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ L+  FC+ GR   A  +F +M   G   + +TYS L+DG  K  ++  AF + + M 
Sbjct: 389 YSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQ 448

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           E+ I P+I             G+   A +L+ ++   GI P  +  + +    L+   S 
Sbjct: 449 ESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSN 508

Query: 173 EHC 175
           E C
Sbjct: 509 EAC 511



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+ A  L  ++ DR L PD +TY+T++ G+C   R   A +LF+++    L P+SI
Sbjct: 363 KSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSI 422

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  CK G +D+A  +   M E   + ++  Y+ LI G      +++A +++  +
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               I P++             G   EA +++  M+ NG +P+
Sbjct: 483 FVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPN 525



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A +L   + +  +EP I  YN +I G C+  +L+ A +LF  L    ++P+
Sbjct: 431 LCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPS 490

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T++I    KEG  ++A  MF KM+  G   N  TY+  I G+ ++ +  +A  + E
Sbjct: 491 VVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIE 550

Query: 122 EMCENNISPN 131
           EM     S +
Sbjct: 551 EMVGRGFSAD 560



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA +LF  L  +G++P ++TY  +I G       +EA ++F K+      PNS T+ +
Sbjct: 472 LEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNV 531

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I  F + G   +A  +  +M+ +G  A+  T+  L+D
Sbjct: 532 AIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 16/168 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+  F QL      P ++ +N ++            + L +++    ++PN  T TILI+
Sbjct: 53  AVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILIN 112

Query: 71  AFCKEGRMDDATMMFS---KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
             C   R D     FS   KM + G +   VT+  L++G      +  A  +++E+ +  
Sbjct: 113 CLCHSNR-DHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMG 171

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +P++             G  T A+QL   M   G  PD +  +T+ D
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVID 219


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A  L+ ++  RG+ PD+ITY T+ICG+C   +L EA  L  ++    + PN
Sbjct: 160 LCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPN 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LID  CKEG++ ++  + + M +KG K +VV YS L+DGY     ++ A  ++ 
Sbjct: 220 IYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFL 279

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +  ++P++              R  EAM L   ML   ++PD +  S+L D
Sbjct: 280 VMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLID 333



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A ++F  +   G+ PD+ +YN II G C   R+DEA+ L  ++    + P+++T++ 
Sbjct: 271 VQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSS 330

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+     +  +M  +G  AN+VTY+ L+DG  K+QN+  A  ++ +M E  
Sbjct: 331 LIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERG 390

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNG 150
           I PN              GR  +   L+  +L  G
Sbjct: 391 IQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKG 425



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  +  L   +T +G++PD++ Y+ ++ GYC +  + +A Q+F  +    + P+
Sbjct: 230 LCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPD 289

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ I+I+  CK  R+D+A  +  +ML K    + VTYS LIDG  K   + +  D+ +
Sbjct: 290 VYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTK 349

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM       N+    +            +A+ L+  M   GI P+    + L D
Sbjct: 350 EMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALID 403



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  +L    ++  +G + D ++Y  ++ G C +     A++L   +     +P+ + ++ 
Sbjct: 96  VKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYST 155

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK+  +D+A  ++S+M  +G   +V+TY+ LI G+  +  +  AF +  EM   N
Sbjct: 156 IIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKN 215

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+PNI             G+  E+  L   M + G+ PD ++ S L D
Sbjct: 216 INPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMD 263



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 67/130 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +   L L  ++  RG   +++TYN+++ G C    LD+A+ LF K+    ++PN
Sbjct: 335 LCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID  CK GR+     +F  +L KG   +V TY+ +I G  K      A  +  
Sbjct: 395 KYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKS 454

Query: 122 EMCENNISPN 131
           +M +N   PN
Sbjct: 455 KMEDNGCIPN 464



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     +  + G++   G +P+ I  NT++ G C    + +++   +K+     + + 
Sbjct: 56  CHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQ 115

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++ IL++  CK G    A  +   + ++  + +VV YS +IDG  K + +  A+D+Y E
Sbjct: 116 VSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSE 175

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P++            AG+  EA  L + M+   I P+    +TL D
Sbjct: 176 MNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLID 228



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++  + + PD +TY+++I G C L R+   + L +++       N
Sbjct: 300 LCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPAN 359

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK   +D A  +F KM E+G + N  TY+ LIDG  K   +K    +++
Sbjct: 360 LVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQ 419

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
            +       ++             G   EA+ +   M  NG +P+ +
Sbjct: 420 HLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAV 466



 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H    + L  Q+  +G+ PD++T + +I  +C L ++  +  +  K+  +  +PN
Sbjct: 20  LVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPN 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I    L+   C +G +  +     K++ +G + + V+Y  L++G  K    + A  +  
Sbjct: 80  TIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLR 139

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            + + +  P++    T            EA  LY  M   GI PD +  +TL
Sbjct: 140 TIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTL 191



 Score = 42.4 bits (98), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P II +  I+     +      + L +++    + P+ +T +ILI+ FC  G+M  +  +
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI------- 132
             K+L+ G + N +  + L+ G      +K +   ++++       + +S  I       
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G    A++L  ++      PD ++ ST+ D
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIID 158


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L+ ++   G+ PD++TY+ +I G+  + +L +A+ LF K+    +KP+  TF I
Sbjct: 194 VNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNI 253

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCK+G+M +   +F+ M+++G K NVVTY  L+DGY   + +  A  ++  M +  
Sbjct: 254 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGG 313

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++P+       I G     +  EAM L+  M    I+P+ +  ++L D
Sbjct: 314 VNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLID 361



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 20/169 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  +F  +   G+ PD  +YN +I G+C + ++DEA+ LF+K+ C  + PN +T+T
Sbjct: 298 QVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYT 357

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF--------D 118
            LID  CK G++  A  +  +M ++G   +++TYS ++D   K+  +  A          
Sbjct: 358 SLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQ 417

Query: 119 VYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
           V+E++     + +            + G   EA+ L   M  NG +PD 
Sbjct: 418 VFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDA 466



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 25/178 (14%)

Query: 11  ALKLFGQLTDRGLEPDIIT-------------YNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +  +F  +  +G +P++IT             Y T+I G C + +   A+QL  ++    
Sbjct: 114 SFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKL 173

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           ++PN + +  +ID+ CK   +++A  ++S+M+ +G   +VVTYS LI G+F    +K A 
Sbjct: 174 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAI 233

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           D++ +M   NI P++             G+  E   ++  M++ GI P+ +   +L D
Sbjct: 234 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMD 291



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 77/129 (59%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +     +F  +  +G++P+++TY +++ GYC + ++++A  +F  +    + P++ 
Sbjct: 260 KDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQ 319

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ I+I+ FCK  ++D+A  +F KM  K    NVVTY+ LIDG  KS  +  A  + +EM
Sbjct: 320 SYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEM 379

Query: 124 CENNISPNI 132
            +  + P+I
Sbjct: 380 HDRGVPPDI 388



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV--------QLFEKL 53
           L K   +  ALKL  ++ DRG+ PDIITY++I+   C  +++D+A+        Q+FE L
Sbjct: 363 LCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDL 422

Query: 54  TCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
                  +   +T++I  FC +G  ++A  + SKM + G   +  TY  +I   FK    
Sbjct: 423 FVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDEN 482

Query: 114 KSAFDVYEEM 123
             A  +  EM
Sbjct: 483 DMAEKLLREM 492



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 25/169 (14%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  +   P I  +  I+     +N    A+ L  ++    +  N +T  ILI+ F + G+
Sbjct: 51  LHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQ 110

Query: 78  MDDATMMFSKMLEKGPKANVVTYS-------------CLIDGYFKSQNMKSAFDVYEEMC 124
              +  +F+ +L+KG   NV+T +              LI+G  K    ++A  +   + 
Sbjct: 111 NPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVD 170

Query: 125 ENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              + PN+    T            EA  LY  M+  GI PD +  S L
Sbjct: 171 GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSAL 219


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L   L  FG++   G  P+++TYNT+I  YC + R+DEA  L + ++   ++PN I++ +
Sbjct: 26  LQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNV 85

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  C+EG M +A  +  +M  KG   + VTY+ L++GY K  N   A  ++ EM  N 
Sbjct: 86  IINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNG 145

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +SP++            A     AM+ +D M   G+ P+    +TL D
Sbjct: 146 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 193



 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 93/166 (56%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A ++  ++T+ G  P ++TYN  I G+C L R++EA+ + +++    L P+ ++++ 
Sbjct: 201 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC++G +D A  M  +M+EKG   + VTYS LI G  + + +  A D+ +EM +  
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+            + G   +A+ L+D M+  G +PD +  S L
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVL 366



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   AL +  ++   G+ P ++TY  +I   C    L+ A++ F+++    L+PN  
Sbjct: 127 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 186

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID F ++G +++A  + ++M E G   +VVTY+  I G+   + M+ A  V +EM
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM 246

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E  ++P++             G    A Q+   M+  G+ PD +  S+L
Sbjct: 247 VEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSL 296



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A++ F Q+  RGL P+  TY T+I G+     L+EA ++  ++T     P+ +
Sbjct: 162 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 221

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   I   C   RM++A  +  +M+EKG   +VV+YS +I G+ +   +  AF + +EM
Sbjct: 222 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 281

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E  +SP+       I G     R TEA  L   ML  G+ PD    +TL
Sbjct: 282 VEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTL 331



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 12/151 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P++ TYN +I G+CS+  L + +  F ++      PN +T+  LIDA+CK GR+D+A 
Sbjct: 6   VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 65

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +   M  KG + N+++Y+ +I+G  +  +MK A+++ EEM     +P+           
Sbjct: 66  GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 125

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              G   +A+ ++  M+RNG+ P  +  + L
Sbjct: 126 CKEGNFHQALVIHAEMVRNGVSPSVVTYTAL 156



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A ++  ++  +G  PD +TYNT++ GYC      +A+ +  ++    + P+
Sbjct: 90  LCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPS 149

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI++ CK   ++ A   F +M  +G + N  TY+ LIDG+ +   +  A+ +  
Sbjct: 150 VVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILN 209

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E+  SP++              R  EA+ +   M+  G+ PD +  ST+
Sbjct: 210 EMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI 261



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 77/131 (58%), Gaps = 5/131 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  LD A ++  ++ ++G+ PD +TY+++I G C + RL EA  L +++  + L P+  
Sbjct: 267 RKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEF 326

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD----- 118
           T+T LI+A+C EG ++ A  +  +M+ KG   + VTYS LI+G  K    + A       
Sbjct: 327 TYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL 386

Query: 119 VYEEMCENNIS 129
           +YEE   ++++
Sbjct: 387 IYEESVPSDVT 397



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L+ AL L  ++  +G  PD +TY+ +I G     R  EA +L  KL   +  P+ +T
Sbjct: 338 EGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVT 397

Query: 65  FTILID---------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +  LI+                FC +G M +A  +F  M+E+  K     Y+ +I G+ +
Sbjct: 398 YDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCR 457

Query: 110 SQNMKSAFDVYEEMCENNISPN 131
             N+  AF++Y+EM  +   P+
Sbjct: 458 GGNLPKAFNLYKEMIHSGFVPH 479



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 27/182 (14%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A  L  ++ D GL PD  TY T+I  YC    L++A+ L +++      P+++T++
Sbjct: 305 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 364

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID---------------GYFKSQ 111
           +LI+   K+ R  +A  +  K++ +    + VTY  LI+               G+    
Sbjct: 365 VLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKG 424

Query: 112 NMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLS 159
            M  A  V+E M E N  P  A            G   +A  LY  M+ +G +P  + + 
Sbjct: 425 LMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVI 484

Query: 160 TL 161
           TL
Sbjct: 485 TL 486



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 12/117 (10%)

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           ++ PN  T+ ILI  FC  G +      F +M   G   NVVTY+ LID Y K   +  A
Sbjct: 5   RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 64

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           F + + M    + PN+             G   EA ++ + M   G  PD +  +TL
Sbjct: 65  FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTL 121



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 51/112 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A ++F  + +R  +P    YN II G+C    L +A  L++++      P+++T   
Sbjct: 426 MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVIT 485

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           LI A  KEG  ++ + +    L             L++   K  NM++  +V
Sbjct: 486 LIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNV 537



 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTII--C-------------GYCSLNRLDEA 46
           L K+     A +L  +L      P  +TY+T+I  C             G+C    + EA
Sbjct: 370 LNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEA 429

Query: 47  VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            ++FE +     KP    + ++I   C+ G +  A  ++ +M+  G   + VT   LI  
Sbjct: 430 DRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 489

Query: 107 YFK 109
            FK
Sbjct: 490 LFK 492


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            L+ F ++   G  P+++TYNT+I GYC L R DEA      +    L+PN ITF ++I+
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C++GR+ + + +  +M  KG   + VTY+ L++GY K  N   A  ++ EM  N +SP
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+            AG    AM+ +D M   G+ P+    +T+ +
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIIN 166



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A++ F Q+  RGL P+  TY TII G+     LDEA ++  ++T     P+ +
Sbjct: 135 KAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIV 194

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+  C  GRM++A  +   M+ KG   +VV+YS +I G+ ++Q +  AF +  EM
Sbjct: 195 TYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEM 254

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P+       I G     R TEA  ++  ML   + PD    +TL +
Sbjct: 255 IGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLIN 306



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 21/180 (11%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A      +  +GLEP++IT+N II G C   RL E  ++  +++     P+ +T+  L
Sbjct: 35  DEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTL 94

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++ +CKEG    A ++ ++M+  G   NVVTY+ LI+   K+ N+  A + +++M    +
Sbjct: 95  VNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGL 154

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            PN     T            EA ++ + M R+G +P      ++  YN   +G   HC+
Sbjct: 155 CPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIP------SIVTYNALING---HCV 205



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L    ++  +++ +G  PD +TYNT++ GYC      +A+ L  ++    L PN
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPN 122

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI++ CK G ++ A   F +M  +G   N  TY+ +I+G+ +   +  A+ V  
Sbjct: 123 VVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLN 182

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  +   P+I             GR  EA+ L   M+  G++PD +  ST+
Sbjct: 183 EMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTI 234



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   AL L  ++   GL P+++TY ++I   C    L+ A++ F+++    L PN  
Sbjct: 100 KEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNER 159

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +I+ F ++G +D+A  + ++M   G   ++VTY+ LI+G+     M+ A  + ++M
Sbjct: 160 TYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDM 219

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
               + P++    T             A Q+   M+   ++PD +  S+L
Sbjct: 220 VGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSL 269



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 68/109 (62%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A ++  ++  + + PD +TY+++I G C   RL EA  +F+++  ++L P+  T+T 
Sbjct: 244 LDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTT 303

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           LI+A+CKEG ++ A  +  +M++KG   + VTY+ LI+G  K    K A
Sbjct: 304 LINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEA 352



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+ L   +  +G+ PD+++Y+TII G+     LD A Q+  ++    + P+++T++
Sbjct: 208 RMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYS 267

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C++ R+ +A  MF +ML      +  TY+ LI+ Y K  ++  A  +++EM + 
Sbjct: 268 SLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQK 327

Query: 127 NISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P            N   R  EA +L   +  +  +P  +  +TL +
Sbjct: 328 GFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIE 376



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 15/143 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ AL L  ++  +G  PD +TYN +I G     R  EA +L  KL      P+++
Sbjct: 310 KEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAV 369

Query: 64  TFTILID---------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
           T+  LI+                FC +G MD+A  +F  M+ K  K N   Y+ +I G+ 
Sbjct: 370 TYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHC 429

Query: 109 KSQNMKSAFDVYEEMCENNISPN 131
           +  N+  A+ +Y+EM   +  P+
Sbjct: 430 RIGNVLKAYKLYKEMVHVDFVPH 452



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 27/179 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A  +F ++    L PD  TY T+I  YC    L++A+ L +++      P+
Sbjct: 273 LCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPD 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID---------------G 106
           ++T+ +LI+   K+ R  +A  +  K+       + VTY+ LI+               G
Sbjct: 333 AVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKG 392

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           +     M  A  V+E M   N  PN A            G   +A +LY  M+    +P
Sbjct: 393 FCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVP 451



 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++F  + ++  +P+   YN II G+C +  + +A +L++++  V   P+++T   
Sbjct: 399 MDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLA 458

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ A   EG   +   +   +L      +      L++   K  NM   F++  EM ++ 
Sbjct: 459 LVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDG 518

Query: 128 ISPNIAGRPTEAM 140
           + P+  G PT A+
Sbjct: 519 LIPS-TGTPTNAI 530


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 325



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ SAF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRK 341

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
            M + NI  +              GR  +A ++   ML  G+ PD 
Sbjct: 342 RMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDA 387



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 EVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDAR 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 85/131 (64%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++   ++ DRG+ P+ +TY+TI+ G+C+L +LDEA QLF+++    + PN
Sbjct: 383 LCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPN 442

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TF+IL+D  C+EG + +A  +F  M EKG + N+ TY+ L++GY     M  A  V+E
Sbjct: 443 TLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFE 502

Query: 122 EMCENNISPNI 132
            M     +P++
Sbjct: 503 IMVGKGCAPDL 513



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A     ++ D+G+ PD++TY TI+ G C L +L+EA++LF+K+     KP+
Sbjct: 313 LYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPD 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +ID+ CK+  ++DA    S+M+++G   N VTYS ++ G+     +  A  +++
Sbjct: 373 VVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFK 432

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM   N+ PN              G  +EA  ++++M   G+ P+
Sbjct: 433 EMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPN 477



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D A+ ++G++   G++PD+IT+ T+I G C+  ++  AV+L+ ++     +P+ I++ 
Sbjct: 143 HVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYN 202

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  C  G  + A  +F KM + G K NVVTY+ +ID   K + +  A D   EM   
Sbjct: 203 TLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGR 262

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P+              G+  EA +L+  M +NG  PD +  + + D
Sbjct: 263 GIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIID 311



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 47/206 (22%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  A++L+ ++   G EPD+I+YNT+I G C+    + AV +F+K+     KPN +T
Sbjct: 176 EGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVT 235

Query: 65  FTILIDAFCKE-----------------------------------GRMDDATMMFSKML 89
           +  +ID+ CK+                                   G++++AT +F +M 
Sbjct: 236 YNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRME 295

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
           + G K +VVTY+ +ID  +K + +  A D   EM +  I P++             G+  
Sbjct: 296 QNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLN 355

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EA++L+  M + G  PD +  +T+ D
Sbjct: 356 EAIRLFKKMEQKGCKPDVVAYNTIID 381



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A+    ++  RG+ PD ITYN+I+ G C L +L+EA +LF+++     KP+
Sbjct: 243 LCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPD 302

Query: 62  SITFTILIDAFCKE-----------------------------------GRMDDATMMFS 86
            +T+ I+ID+  K+                                   G++++A  +F 
Sbjct: 303 VVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFK 362

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           KM +KG K +VV Y+ +ID   K + +  A +   EM +  I PN              G
Sbjct: 363 KMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLG 422

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  EA QL+  M+   +MP+ L  S L D
Sbjct: 423 QLDEATQLFKEMVGRNVMPNTLTFSILVD 451



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
            C ++ A K+F  +  +G  PD+ +YN +I GYC+  R+D+A  L  +++  +L PN++T
Sbjct: 491 RCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVT 550

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  ++   C  GR+ DA  +F KM   G    ++TYS L++G  K  ++  A  +++ M 
Sbjct: 551 YNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMK 610

Query: 125 ENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
           E  + P+            I G+   A  L+  +  +GI P G
Sbjct: 611 EKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPG 653



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A  +F  +T++G+EP+I TYN ++ GYC   +++EA ++FE +      P+
Sbjct: 453 LCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPD 512

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+ +C   RMD A  + ++M  K    N VTY+ ++ G      +  A ++++
Sbjct: 513 LHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFK 572

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +MC + + P +             G   EA++L+ SM    + PD +L + L +
Sbjct: 573 KMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIE 626



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 12/153 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+   + + N +I   C LN +D AV ++ K+  + ++P+ ITFT LI+  C EG++  A
Sbjct: 123 GVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVA 182

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
             ++++M+  G + +V++Y+ LI+G   S N   A  V+++M +N   PN+    T    
Sbjct: 183 VELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDS 242

Query: 138 --------EAMQLYDSMLRNGIMPDGLLLSTLA 162
                   +AM     M+  GI PD +  +++ 
Sbjct: 243 LCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIV 275



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++   G+ P ++TY+ ++ G C    LDEA++LF+ +   +L+P+ I +TILI+
Sbjct: 567 AQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIE 626

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE--EMCENNI 128
                G+++ A  +FSK+   G +    TY+ +I G  K      A++++   +M ++N+
Sbjct: 627 GMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMKHNV 686



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD ALKLF  + ++ LEPDII Y  +I G     +L+ A  LF KL+   ++P 
Sbjct: 593 LCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPP 652

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
             T+ ++I    KEG  D+A  +F K   K  K NV+
Sbjct: 653 GRTYNVMIKGLLKEGLSDEAYELFRKW--KMMKHNVI 687



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL  F ++      P I+ +   +     + +    V L  ++    +     +  I
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C+   +D A  ++ KM + G + +V+T++ LI+G      +K A ++Y EM  + 
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++            +G    A+ ++  M +NG  P+ +  +T+ D
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIID 241


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 325



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ SAF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRK 341

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
            M + NI  +              GR  +A ++   ML  G+ PD 
Sbjct: 342 RMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDA 387



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 EVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDAR 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +     +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L   L  FG++   G  P+++TYNT+I  YC + R+DEA  L + ++   ++PN I++ +
Sbjct: 230 LQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNV 289

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  C+EG M +A  +  +M  KG   + VTY+ L++GY K  N   A  ++ EM  N 
Sbjct: 290 IINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNG 349

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +SP++            A     AM+ +D M   G+ P+    +TL D
Sbjct: 350 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 397



 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 94/168 (55%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A ++  ++T+ G  P ++TYN  I G+C L R++EA+ + +++    L P+ ++++ 
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC++G +D A  M  +M+EKG   + VTYS LI G  + + +  A D+ +EM +  
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+            + G   +A+ L+D M+  G +PD +  S L +
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLIN 572



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   AL +  ++   G+ P ++TY  +I   C    L+ A++ F+++    L+PN  
Sbjct: 331 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 390

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID F ++G +++A  + ++M E G   +VVTY+  I G+   + M+ A  V +EM
Sbjct: 391 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM 450

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            E  ++P++    T             A Q+   M+  G+ PD +  S+L
Sbjct: 451 VEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSL 500



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A++ F Q+  RGL P+  TY T+I G+     L+EA ++  ++T     P+ +
Sbjct: 366 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 425

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   I   C   RM++A  +  +M+EKG   +VV+YS +I G+ +   +  AF + +EM
Sbjct: 426 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 485

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  +SP+       I G     R TEA  L   ML  G+ PD    +TL +
Sbjct: 486 VEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLIN 537



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A +++ ++    + P++ TYN +I G+CS+  L + +  F ++      PN +T+  LI
Sbjct: 197 SAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI 256

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           DA+CK GR+D+A  +   M  KG + N+++Y+ +I+G  +  +MK A+++ EEM     +
Sbjct: 257 DAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFT 316

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P+              G   +A+ ++  M+RNG+ P  +  + L +
Sbjct: 317 PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALIN 362



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A ++  ++  +G  PD +TYNT++ GYC      +A+ +  ++    + P+
Sbjct: 294 LCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPS 353

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI++ CK   ++ A   F +M  +G + N  TY+ LIDG+ +   +  A+ +  
Sbjct: 354 VVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILN 413

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E+  SP++              R  EA+ +   M+  G+ PD +  ST+
Sbjct: 414 EMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI 465



 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 77/131 (58%), Gaps = 5/131 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  LD A ++  ++ ++G+ PD +TY+++I G C + RL EA  L +++  + L P+  
Sbjct: 471 RKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEF 530

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD----- 118
           T+T LI+A+C EG ++ A  +  +M+ KG   + VTYS LI+G  K    + A       
Sbjct: 531 TYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL 590

Query: 119 VYEEMCENNIS 129
           +YEE   ++++
Sbjct: 591 IYEESVPSDVT 601



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L+ AL L  ++  +G  PD +TY+ +I G     R  EA +L  KL   +  P+ +T
Sbjct: 542 EGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVT 601

Query: 65  FTILID---------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +  LI+                FC +G M +A  +F  M+E+  K     Y+ +I G+ +
Sbjct: 602 YDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCR 661

Query: 110 SQNMKSAFDVYEEMCENNISPN 131
             N+  AF++Y+EM  +   P+
Sbjct: 662 GGNLPKAFNLYKEMIHSGFVPH 683



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 27/181 (14%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  L  ++ D GL PD  TY T+I  YC    L++A+ L +++      P+++T+++
Sbjct: 510 LTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSV 569

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID---------------GYFKSQN 112
           LI+   K+ R  +A  +  K++ +    + VTY  LI+               G+     
Sbjct: 570 LINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGL 629

Query: 113 MKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
           M  A  V+E M E N  P  A            G   +A  LY  M+ +G +P  + + T
Sbjct: 630 MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVIT 689

Query: 161 L 161
           L
Sbjct: 690 L 690



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 49/182 (26%)

Query: 29  TYNTIICGYCSLNRLDEAV-------------------------------------QLFE 51
            ++ ++  Y  LN +D+AV                                     +++ 
Sbjct: 144 VFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYR 203

Query: 52  KLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111
           ++   ++ PN  T+ ILI  FC  G +      F +M   G   NVVTY+ LID Y K  
Sbjct: 204 EMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 263

Query: 112 NMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
            +  AF + + M    + PN+             G   EA ++ + M   G  PD +  +
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 323

Query: 160 TL 161
           TL
Sbjct: 324 TL 325



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 58/124 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A ++F  + +R  +P    YN II G+C    L +A  L++++      P+++T   
Sbjct: 630 MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVIT 689

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A  KEG  ++ + +    L             L++   K  NM++  +V  +M ++ 
Sbjct: 690 LIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDG 749

Query: 128 ISPN 131
           + PN
Sbjct: 750 LLPN 753



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTII--C-------------GYCSLNRLDEA 46
           L K+     A +L  +L      P  +TY+T+I  C             G+C    + EA
Sbjct: 574 LNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEA 633

Query: 47  VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            ++FE +     KP    + ++I   C+ G +  A  ++ +M+  G   + VT   LI  
Sbjct: 634 DRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 693

Query: 107 YFK 109
            FK
Sbjct: 694 LFK 696


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD    +TL D
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 319



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 336 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 380



 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG +D A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
               + P+I             G   +  +L   M RNG  P      ++  YN+  +G
Sbjct: 373 LSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAP------SVVTYNVLMNG 425



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K ++ TY+ +I+ + K  ++     + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  N  +P++ 
Sbjct: 406 EMQRNGHAPSVV 417



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +C    +  A  +F+ +T   L+P+ +++  L++ + + G +D+ 
Sbjct: 131 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + S ML  G + +V TYS LI+G  K   M  A ++++EM    + PN          
Sbjct: 191 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
           +M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 KMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     KM+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +K+    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +M+DA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A +LF ++ D GL P+ +T+ T+I G+C   R+  A+++++++    L P+
Sbjct: 216 LCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++A    +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G +P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A    +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYVPSVV 417



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M+ A +++EEM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVXLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A     ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H++ A  L+ +   + + PD+ TYN +I G+C + +L +A+ LF K+T   + P+  
Sbjct: 345 KDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVY 404

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF+IL+D FCK+G + +A  + + M+++  K +VVTYS L+DGY     +  A  ++  M
Sbjct: 405 TFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTM 464

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
               ++ N+                 EAM+L+  M    I PD +  S+L D
Sbjct: 465 SHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLID 516



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL+L  ++  RG +PDIITYN+I+   C  + +D+A+ L  KL    ++P+
Sbjct: 518 LCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPD 577

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TIL+   C+ G+++DA  +F  +L KG   +V  Y+ +I G+        A  +  
Sbjct: 578 MNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLS 637

Query: 122 EMCENNISPNIAGRPTEAMQLY--------DSMLRNGIMPDGLLLSTLAD 163
           +M EN   P+        + L+        + +LR  IM  GLL++   D
Sbjct: 638 KMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIM-RGLLVALTDD 686



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 87/155 (56%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +F  ++ RG+  ++ +YN +I G+C +  +DEA++LF+++   Q+ P+ IT++ 
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+  A  +  +M  +G + +++TY+ ++D   K  ++  A  +  ++    
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I P++            +G+  +A ++++ +L  G
Sbjct: 574 IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKG 608



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++   G EPD IT  T I G+C   ++ +A+   +K+  +    + +++  LI+  CK G
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----- 131
               A  +  +   K  + +VV Y+ +IDG  K +++  AFD+Y E     I P+     
Sbjct: 313 ETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372

Query: 132 -------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  I G+  +A+ L++ M    I+PD    S L D
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVD 411



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++  A  +   +  + ++PD++TY++++ GYC +N +++A  +F  ++   +  N  
Sbjct: 415 KDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQ 474

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ I+I+ FCK   +D+A  +F +M  K    +V+TYS LIDG  KS  +  A ++ +EM
Sbjct: 475 SYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEM 534

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
                 P+I                 +A+ L   +   GI PD
Sbjct: 535 HYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPD 577



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL    ++   G   D ++Y T+I G C +     A++L  +     ++P+ + + 
Sbjct: 278 QIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYN 337

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID  CK+  ++DA  ++S+ + K    +V TY+ LI G+     +K A D++ +M   
Sbjct: 338 TIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSK 397

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI P++             G   EA  +   M++  I PD +  S+L D
Sbjct: 398 NIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMD 446


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++P I+TY+++I G+C  +RLDEA Q+FE +      P+
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++++ LI  FCK  R+D+   +F +M ++G   N VTY+ LI G F++ +   A ++++
Sbjct: 396 VVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFK 455

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM  + + PNI             G+  +AM +++ + R+ + P      T+  YN+   
Sbjct: 456 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYNIMIE 509

Query: 170 G 170
           G
Sbjct: 510 G 510



 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  L  ++    LEP ++ Y TII G C    +D+A+ LF+++    ++PN
Sbjct: 231 LCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI   C  GR  DA+ + S M+E+    +V T+S LID + K   +  A  +Y+
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 350

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I P+I              R  EA Q+++ M+     PD +  STL
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  +G +PD++TY  ++ G C     D A  L  K+   +L+P  + +T +ID
Sbjct: 205 AVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIID 264

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   MDDA  +F +M  KG + NVVTYS LI           A  +  +M E  I+P
Sbjct: 265 GLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G+  EA +LYD M++  I P  +  S+L
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+   G +P+ +T+NT+I G    N+  EAV L +++     +P+ 
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDL 221

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+ ++++  CK G  D A ++ +KM +   +  V+ Y+ +IDG  K+++M  A ++++E
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKE 281

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN+             GR ++A +L   M+   I PD    S L D
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++  +G+ P+++TY+++I   C+  R  +A +L   +   ++ P+
Sbjct: 266 LCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
             TF+ LIDAF KEG                                   R+D+A  MF 
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ K    +VV+YS LI G+ K++ +    +++ EM +  +  N             AG
Sbjct: 386 FMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAG 445

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A +++  M+ +G+ P+ +  +TL D
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 76/123 (61%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A ++F ++   G+ P+I+TYNT++ G C   +L++A+ +FE L   +++P   T+ I+
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG K +VV Y+ +I G+ +  + + A  +++EM E+  
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 567

Query: 129 SPN 131
            PN
Sbjct: 568 LPN 570



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  LD A+ LFG++      P II ++ ++     +N+ D  + L E++  + +  N 
Sbjct: 57  LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNH 116

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++ILI+ FC+  ++  A  +  KM++ G + N+VT S L++GY  S+ +  A  + ++
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M      PN            +  + +EA+ L D M+  G  PD
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPD 220



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  ++LF +++ RGL  + +TY T+I G       D A ++F+++    + PN +
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 467

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D  CK G+++ A ++F  +     +  + TY+ +I+G  K+  ++  +D++  +
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + P++             G   EA  L+  M  +G +P+    +TL    L+
Sbjct: 528 SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 65/122 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A+ +F  L    +EP I TYN +I G C   ++++   LF  L+   +KP+
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I  FC++G  ++A  +F +M E G   N   Y+ LI    +  + +++ ++ +
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595

Query: 122 EM 123
           EM
Sbjct: 596 EM 597



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  Q+ + G+  +  TY+ +I  +C  ++L  A+ +  K+  +  +PN +T + 
Sbjct: 97  FDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ +C   R+ +A  +  +M   G + N VT++ LI G F       A  + + M    
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKG 216

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G    A  L + M +  + P  L+ +T+ D
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIID 264



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++    LF  L+ +G++PD++ YNT+I G+C     +EA  LF+++      PNS 
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
            +  LI A  ++G  + +  +  +M   G   +  T
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 608


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMP 414



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGCMPSVV 417



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 92/201 (45%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALK+   +   G+E D+ TYNT+ CG C +NR+ EA  L   +    + PN +T+T 
Sbjct: 323 VDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTT 382

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------------ 115
           LI   CKEG M +A  +F +M  KG   +VVTY+ ++DGY K  +++             
Sbjct: 383 LISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKG 442

Query: 116 -----------------------AFDVYEEMCENNISPNIA------------GRPTEAM 140
                                  A  ++EEM      PN+             GR  EA 
Sbjct: 443 LVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAF 502

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           QLYD ML+ G+ PD  L S L
Sbjct: 503 QLYDDMLKAGLTPDDSLYSAL 523



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F +    G+EP+  TY  +I G+C + +++ A  L   +    +  N I F  +ID
Sbjct: 256 ASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMID 315

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++G +D+A  + + M + G + +V TY+ L  G  +   M  A  +   M E  + P
Sbjct: 316 GYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPP 375

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N              G   EA +L+  M   G MP  +  + + D  ++    +E
Sbjct: 376 NYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIRE 430



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++  + +  D+  Y  +I  YC    +  A ++F++     ++PN  T+ +LI+ FCK G
Sbjct: 227 EMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIG 286

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
           +M+ A M+ + M  +G   N + ++ +IDGY +   + +A  V   M +  I  ++    
Sbjct: 287 QMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYN 346

Query: 133 --------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                     R  EA  L   M+  G+ P+ +  +TL
Sbjct: 347 TLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTL 383



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK+  +  A +   ++  +GL PD+ TY +++ G+C   ++D A++LFE++     +PN 
Sbjct: 423 IKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNV 482

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           + +T LI    KEGR ++A  ++  ML+ G   +   YS L+ G   + N K
Sbjct: 483 VAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALV-GSLHTDNRK 533



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALKLF ++  RG EP+++ Y  +I G     R +EA QL++ +    L P+   ++ 
Sbjct: 463 VDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSA 522

Query: 68  LIDAFCKEGRMD 79
           L+ +   + R D
Sbjct: 523 LVGSLHTDNRKD 534



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 16/138 (11%)

Query: 31  NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM--MFSKM 88
           + ++ G+C   R+D+A  L +++    ++ N++ +  L+D + +  R DDA +  +   M
Sbjct: 136 SVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVR--RKDDARVQELLEIM 193

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
              G +A V TY+ L+D    + ++     V +EM   N++ ++            AG  
Sbjct: 194 ENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNV 253

Query: 137 TEAMQLYDSMLRNGIMPD 154
             A +++D  + NGI P+
Sbjct: 254 RRASEVFDECVGNGIEPN 271



 Score = 42.0 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 53/104 (50%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +L   + + G+E  + TY  ++    +   + +   + +++    +  +   +T +I+A+
Sbjct: 188 ELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAY 247

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           C+ G +  A+ +F + +  G + N  TY  LI+G+ K   M++A
Sbjct: 248 CRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAA 291


>gi|357499031|ref|XP_003619804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494819|gb|AES76022.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 344

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 94/156 (60%), Gaps = 4/156 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L+ ++  + + PD+ITY+ +I G+C + +L++ + LF K+T   + P+  TF I
Sbjct: 66  VNDAFDLYSEMVAKRISPDVITYSALISGFCIVGKLNDTIGLFNKMTAENINPDVYTFNI 125

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            +DAFCKEGR+ +A  + S M++ G K +VVTY+ L++GY   + M  A D++  M ++ 
Sbjct: 126 SVDAFCKEGRVKEAKYVLSMMMKHGIKPSVVTYNTLMNGYCLVKEMNMAKDIFNTMNQSG 185

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +   I     EA+ LY+ M     +PD +  S+L D
Sbjct: 186 VVKMI----DEAINLYEEMHCRKNIPDVVTYSSLVD 217



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 12/138 (8%)

Query: 36  GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
           G C + +   A+QL  ++    ++PN I ++ +ID  CK   ++DA  ++S+M+ K    
Sbjct: 24  GSCKVGQTRAALQLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKRISP 83

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           +V+TYS LI G+     +     ++ +M   NI+P++             GR  EA  + 
Sbjct: 84  DVITYSALISGFCIVGKLNDTIGLFNKMTAENINPDVYTFNISVDAFCKEGRVKEAKYVL 143

Query: 144 DSMLRNGIMPDGLLLSTL 161
             M+++GI P  +  +TL
Sbjct: 144 SMMMKHGIKPSVVTYNTL 161



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 33/183 (18%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYC-------------SLNR------LD 44
           KE  +  A  +   +   G++P ++TYNT++ GYC             ++N+      +D
Sbjct: 132 KEGRVKEAKYVLSMMMKHGIKPSVVTYNTLMNGYCLVKEMNMAKDIFNTMNQSGVVKMID 191

Query: 45  EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           EA+ L+E++ C +  P+ +T++ L+D     G+  D  + ++ +L+ G + ++ TY+  I
Sbjct: 192 EAINLYEEMHCRKNIPDVVTYSSLVDIMHDRGQPPD-IITYNSILD-GIRPDMYTYTIFI 249

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIM 152
            G  +S  +K A  V+E++     + ++             G   EA+ L   M  NG +
Sbjct: 250 KGLCQSGKLKDARKVFEDLLVKGYNLDVYTYTVMIQGFCDKGLFKEALALLSKMEDNGCI 309

Query: 153 PDG 155
           PD 
Sbjct: 310 PDA 312



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 32/160 (20%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+  + LF ++T   + PD+ T+N  +  +C   R+ EA  +   +    +KP+ +T+  
Sbjct: 101 LNDTIGLFNKMTAENINPDVYTFNISVDAFCKEGRVKEAKYVLSMMMKHGIKPSVVTYNT 160

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CEN 126
           L++ +C    M+ A  +F+ M + G    VV    +ID          A ++YEEM C  
Sbjct: 161 LMNGYCLVKEMNMAKDIFNTMNQSG----VVK---MID---------EAINLYEEMHCRK 204

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           NI P++             G+P + +  Y+S+L +GI PD
Sbjct: 205 NI-PDVVTYSSLVDIMHDRGQPPDIIT-YNSIL-DGIRPD 241



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D  CK G+   A  +  ++  K  + NV+ YS +IDG  K + +  AFD+Y EM    IS
Sbjct: 23  DGSCKVGQTRAALQLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKRIS 82

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           P+            I G+  + + L++ M    I PD
Sbjct: 83  PDVITYSALISGFCIVGKLNDTIGLFNKMTAENINPD 119



 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 41/85 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A K+F  L  +G   D+ TY  +I G+C      EA+ L  K+      P++  + I
Sbjct: 258 LKDARKVFEDLLVKGYNLDVYTYTVMIQGFCDKGLFKEALALLSKMEDNGCIPDAKIYEI 317

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG 92
           +I +  ++   D A  +  +M+ +G
Sbjct: 318 VILSLFEKDENDMAEKLLREMIARG 342


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 47/210 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ AL +F ++  +G+ P++ TYN+II G C  +       L  ++   ++ PN
Sbjct: 224 LFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPN 283

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            + FT L+DA CKEG                                    MD+A  +F 
Sbjct: 284 VVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFD 343

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ KG   NV++YS LI+GY K Q +  A  ++EEMC+  + PNI             G
Sbjct: 344 TMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVG 403

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           R  +A+ L+  M+ +G +PD +    L DY
Sbjct: 404 RLRDAIALFHEMVASGQIPDLVTYRILLDY 433



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F  +  +G  P++I+Y+T+I GYC + R+D+A+ LFE++   +L PN +T+  
Sbjct: 335 MDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNT 394

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+ DA  +F +M+  G   ++VTY  L+D   K++++  A  + + +  +N
Sbjct: 395 LIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSN 454

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++P+I             G    A  L+ S+   G+ PD
Sbjct: 455 LAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPD 493



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHL---DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL   D    +  ++   G +PD  T+ T+I G C   ++ EA+ LF+K+     +PN 
Sbjct: 120 CHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNG 179

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI   CK G    A  +   M++K  + NV+TY+ +ID  FK + +  A +++ E
Sbjct: 180 VTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSE 239

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISPN++                    L + M+ + IMP+ ++ +TL D
Sbjct: 240 MIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVD 292



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++   G +P+ +TY T+I G C +     A++L   +     +PN IT
Sbjct: 157 EGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVIT 216

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +ID   K+ ++++A  +FS+M+ KG   NV TY+ +I G  K    K    +  EM 
Sbjct: 217 YNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMV 276

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ I PN+             G  T A  + D M++ G+ PD +  + L D
Sbjct: 277 DSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMD 327



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+  D+ T   +I  +C LNR+D    +  K+  +  +P++ TFT
Sbjct: 89  HYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFT 148

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F KM+ +G + N VTY  LI G  K  N ++A  +   M + 
Sbjct: 149 TLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQK 208

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           N  PN+    T            EA+ ++  M+  GI P+
Sbjct: 209 NCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPN 248



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  R L P+I+TYNT+I G C + RL +A+ LF ++      P+ +T+ I
Sbjct: 370 IDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRI 429

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK   +D A  M   +       ++ +Y+ +IDG  +   +++A D++  +    
Sbjct: 430 LLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKG 489

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + P++             G   EA +L+  M  +G  PD         YNL + G
Sbjct: 490 LHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDD------CTYNLITRG 538



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ +   +    L PDI +YN +I G C +  L+ A  LF  L+   L P+
Sbjct: 434 LCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPD 493

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I+  C +G + +AT +F +M   G   +  TY+ +  G+ ++    SA  + +
Sbjct: 494 VWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQ 553

Query: 122 EMCENNISPN 131
           EM     S +
Sbjct: 554 EMLGRGFSAD 563



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA  LF  L+ +GL PD+ TY  +I G C    L EA +LF ++      P+  T+ +
Sbjct: 475 LEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNL 534

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +   F +      A  +  +ML +G  A+  T + +++
Sbjct: 535 ITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVE 572



 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KLF ++   G  PD  TYN I  G+   N    A+QL +++       ++ T T+
Sbjct: 510 LAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITL 569

Query: 68  LIDAFCKEG 76
           +++    +G
Sbjct: 570 IVEMLSDDG 578


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  + +RG+ PD+ +Y  +I GYC   R+DEAV LF ++ C  +  + + ++ LID
Sbjct: 348 ARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLID 407

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+  A  +FS +   GP  NV+TY+ LID + K Q++    ++++ MC   ++P
Sbjct: 408 GLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTP 467

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +            + R  EAM L   M    + PD +  ++L D
Sbjct: 468 TVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFD 512



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L+ ++ D G++PDI+TY ++I G+C   +  E  QL  ++    + PN  TF +LID
Sbjct: 243 ARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLID 302

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFC++G+M +A  MF+ M+++G + ++VT++ LI G+    N+  A  +++ + E  I P
Sbjct: 303 AFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILP 362

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++              R  EA+ L++ M    ++ D +L S+L D
Sbjct: 363 DVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLID 407



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 63/106 (59%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++LF  +  +GL P ++TYN +I GYC   R+ EA+ L   +    L P+SIT+  
Sbjct: 450 IDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNS 509

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
           L D  CK GR+ DA  +F  M   GP  +V TY+ L+D + K+Q++
Sbjct: 510 LFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A +LF  + + G  P++ITYN +I  +C +  +D  ++LF+ +    L P 
Sbjct: 409 LCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPT 468

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILI+ +CK  R+ +A  + S M  K    + +TY+ L DG  KS  +  A+++++
Sbjct: 469 VLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFK 528

Query: 122 EMCENNISPNIAGRPTEA 139
            M       ++ G P + 
Sbjct: 529 VM-------HVGGPPVDV 539



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+     +  +G+  D + Y T+I G C + R  +A QL +++    +KPN + + +
Sbjct: 170 VQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNM 229

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID+FCK+     A  ++ K+++ G   +++TY+ LI G+ ++        +  EM   N
Sbjct: 230 IIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKN 289

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I+PN+             G+  EA  +++ M++ G  PD +  +TL
Sbjct: 290 INPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTL 335



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     A  + G +  RG +P+ IT  T++ G C    + +A+   + +    +  + 
Sbjct: 130 CHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDE 189

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + +  LI+  CK GR  DA  +  +M  +  K N+V Y+ +ID + K +    A D+Y +
Sbjct: 190 VCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLK 249

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + +  I P+I             G+  E  QL   M+   I P+    + L D
Sbjct: 250 IVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLID 302



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K  H   A+ L  Q+  +G+ P I T +  I  YC L  +  A  +   +     +PN
Sbjct: 94  VVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPN 153

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT T ++   C  G +  A      +  +G   + V Y  LI+G  K      AF + +
Sbjct: 154 NITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQ 213

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PNI                 +A  LY  ++  GI PD L  ++L
Sbjct: 214 EMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSL 265



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF  L +    P +I +NTII     +     A+ L +++    + P+  T +I
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY------- 120
            I+ +C  G M  A  +   +L++G + N +T + ++ G   +  ++ A D +       
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184

Query: 121 ---EEMCENNISPNIA--GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              +E+C   +   +   GR  +A QL   M    + P+ ++ + + D
Sbjct: 185 MLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIID 232


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 12/180 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK+  +  A+ L   L  RG  PD++TYNT+I G C  NR+ EA  L +++  +   PN
Sbjct: 361 LIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPN 420

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T   ++   C+ GR+DDA  +  +M  K    NVV Y+ LIDG  KS  M  A  V +
Sbjct: 421 DVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLD 480

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M    ++ +              GR  EAM +YD M+  G +PDG    TL +  + +S
Sbjct: 481 AMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNS 540



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 19/188 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTII-CGYCSLNRLDEAVQLFEKLTCVQL 58
           L K  +L+ A +L  ++  RG +  PDI+TYNT+I  G C    ++EA+++ + +     
Sbjct: 142 LCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGP 201

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            P+ IT+  +I A C  GR+ +A  +   M       ++VT++ L+DG+ K+  +  A +
Sbjct: 202 APDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALE 258

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           V EEMC  NI P++             G+   A  L + ++R G +PD +  ++L D  L
Sbjct: 259 VLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVD-GL 317

Query: 167 QSSGSQEH 174
             SG  E 
Sbjct: 318 CKSGEIEE 325



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 21/172 (12%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++T+NT++ G+C    L  A+++ E++    + P+ IT+TIL++  C+ G++  A  +
Sbjct: 235 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 294

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMK---------SAFDVYEEMCENNISP----- 130
             +++ +G   +V+ Y+ L+DG  KS  ++         SA ++  EM   N+ P     
Sbjct: 295 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTY 354

Query: 131 NIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           NI        G  ++A+ L   ++  G +PD +  +TL D   +++  +E C
Sbjct: 355 NIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC 406



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+K  H     K++  L   G  P+++T+  +I G C   +   A++    L    + P
Sbjct: 36  ILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAP 95

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +   F  LI    K+G  D A  +F  M       ++ TY+ +I G  KS N++ A ++ 
Sbjct: 96  DVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELL 155

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDG 155
           EEM          G+    +  Y++++  GI  DG
Sbjct: 156 EEMIRR------GGKSAPDIVTYNTLINAGICKDG 184



 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 21/179 (11%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  AL++  ++    + PD+ITY  ++ G C + ++  A  L E++      P+ I
Sbjct: 249 KAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVI 308

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV---------TYSCLIDGYFKSQNMK 114
            +T L+D  CK G +++A  +  +M  +   A +V         TY+ ++ G  K  ++ 
Sbjct: 309 AYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSIS 368

Query: 115 SAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            A  +  ++      P++            A R  EA  L D M   G  P+ + L ++
Sbjct: 369 KAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSV 427



 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 13/127 (10%)

Query: 41  NRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           +R D A+Q F+        K +  ++  L+D   K G       ++  +L  G   N+VT
Sbjct: 5   SRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVT 64

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSML 147
           +  LI G  K+     A +    + E +++P++             G P +A++L+++M 
Sbjct: 65  FKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENME 124

Query: 148 RNGIMPD 154
            + + PD
Sbjct: 125 SSRVNPD 131


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  AL +FG++    +EPDI+TY+++I G C  +   E+  L  ++    ++P+
Sbjct: 324 LCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPD 383

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+I +D FCK+G + +A  + + M+E+G + NVVTY+ L+DGY     M  A  V++
Sbjct: 384 VVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFD 443

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P++            + R  EA QL+D M   G+ P+ +  +TL
Sbjct: 444 IMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTL 495



 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A K+F  + ++G  PD+++YN +I GYC   R+DEA QLF++++   L PNSIT T
Sbjct: 434 QMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHT 493

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+ GR   A  +F KM   G   +++TYS L+ G+ K  ++  A  ++E + ++
Sbjct: 494 TLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKS 553

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            + PN             AG+  +A +L+ S+    + PD
Sbjct: 554 QLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 13/174 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ LF  +   G+ P ++TYN++I G C+  +  +A  LF+++    +KP+ +TF+I
Sbjct: 260 VNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSI 319

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA CKEG + +A  +F KM++   + ++VTYS LI G  KS   K +  +  EM   N
Sbjct: 320 LVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRN 379

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           I P++             G  +EA  + + M+  G+ P+ +  ++L D Y L S
Sbjct: 380 IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHS 433



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 23/158 (14%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +   + +RGL P+++TYN+++ GYC  +++DEA ++F+ +      P+ +
Sbjct: 396 KKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVL 455

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI  +CK  R+D+A  +F +M  KG   N +T++ LI G                +
Sbjct: 456 SYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISG----------------L 499

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           C+       AGRP  A +L+  M  +G  PD +  STL
Sbjct: 500 CQ-------AGRPYAAKELFKKMGSHGCPPDLITYSTL 530



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL        + G++   G +P IIT+NT+I G C   R+ EA++  + +     +P  
Sbjct: 150 CHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTV 209

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T T++++  CK G+   A +   KM+E   +  VV+YS +ID   K++ +  A D++  
Sbjct: 210 YTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYH 269

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP +            +G+  +A  L+  ML   + PD +  S L D
Sbjct: 270 MRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD 322



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  H D+ + ++ ++   G+   + T   +I   C L+ +     +  K+  +  KP+
Sbjct: 114 LVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPS 173

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  LI+  C EGR+ +A      ++ +G +  V T++ +++G  K     +A    +
Sbjct: 174 IITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMK 233

Query: 122 EMCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E +  P +                 EA+ L+  M   GI P  +  ++L  Y + +S
Sbjct: 234 KMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLI-YGMCNS 292

Query: 170 GSQEH 174
           G  + 
Sbjct: 293 GQWKQ 297



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 23/147 (15%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D AL  F Q+      P I  +N ++     +   D  V ++ K+    +  +  T T
Sbjct: 84  NFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLT 143

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+  C    +     +  K+ + G K +++T++ LI+G                +C  
Sbjct: 144 ILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLING----------------LC-- 185

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMP 153
                I GR  EAM+  D ++  G  P
Sbjct: 186 -----IEGRIVEAMEQLDYIMSRGYQP 207


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 12/169 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L  A +  G +   G +P++++YNTII GY S   ++ A ++ + +    ++P+S T
Sbjct: 186 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYT 245

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI   CKEGR+++A+ +F KM+E G   N VTY+ LIDGY    +++ AF   +EM 
Sbjct: 246 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 305

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  I P+++            GR  EA  +   M + GI+PD +  + L
Sbjct: 306 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 354



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  LF ++ + GL P+ +TYNT+I GYC+   L+ A    +++    + P+  
Sbjct: 255 KEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVS 314

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+ A   EGRM +A  M  +M +KG   + +TY+ LI+GY +  N K AFD++ EM
Sbjct: 315 TYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEM 374

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I P                R  EA  L++ +L  G+ PD ++ + + D
Sbjct: 375 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMID 426



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 16/168 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   +  A  LF ++ D+G+ PD+I +N +I G+C+   ++ A  L +++    + P
Sbjct: 392 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPP 451

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF  L+   C+EG++++A M+  +M  +G K + ++Y+ LI GY +  ++K AF V 
Sbjct: 452 DEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVR 511

Query: 121 EEMCENNISP--------------NIAGRPTEAMQLYDSMLRNGIMPD 154
           +EM     +P              N  G   E  +L   M+  GI PD
Sbjct: 512 DEMLSIGFNPTLLTYNALIKCLCKNQEGDLAE--ELLKEMVNKGISPD 557



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A  +  ++  +G+ PD ITYN +I GY        A  L  ++    ++P 
Sbjct: 323 LFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPT 382

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI    +  RM +A  +F K+L++G   +V+ ++ +IDG+  + N++ AF + +
Sbjct: 383 HVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLK 442

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   ++ P+              G+  EA  L D M   GI PD +  +TL
Sbjct: 443 EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTL 494



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A  L  ++  RG++PD I+YNT+I GY     + +A  + +++  +   P  +
Sbjct: 465 REGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLL 524

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+  LI   CK    D A  +  +M+ KG   +  TY  LI+G
Sbjct: 525 TYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 567


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+  L  FG++   G  P+++TYNTII  YC L ++ EA +L   +    L PN I++ 
Sbjct: 218 NLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYN 277

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++I+  C+EG+M + + +  +M ++    + VT++ LI+GY    N   A  ++ EM +N
Sbjct: 278 VVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKN 337

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +SPN+            AG    AM+  D M   G+ P+G   +TL D
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386



 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +    ++  +++ R   PD +T+NT+I GYC++    +A+ L  ++    L PN
Sbjct: 283 LCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPN 342

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI++ CK G ++ A     +M ++G   N  TY+ LIDG+ +   +K A+ + +
Sbjct: 343 VVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMK 402

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM EN  +P I             GR  +A  L   M+  G +PD +  ST+
Sbjct: 403 EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454



 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A++   Q+ DRGL P+  TY T+I G+     L +A Q+ +++      P  I
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTII 414

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+  C  GRM+DA+ +  +M+E+G   +VV+YS +I G+ ++Q ++ AF +  EM
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEM 474

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               ISP++A             R  E   L+  ML  G+ PD +  ++L +
Sbjct: 475 VAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLIN 526



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 22/179 (12%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  LD AL+L  ++  +G  PDI+TYN +I G+   +R  EA +L  KL   +  PN IT
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 65  FTILID---------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +  LID                FC +G M++A  +   ML+KG K N   Y+ +I G+ K
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 110 SQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             N++ A+++Y+EM  +  +P+        M L  S+   G     + L+ L DY L+S
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPH----SVTIMALAKSLYHEG---KEVELNQLLDYTLKS 702



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 77/129 (59%), Gaps = 5/129 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +L  ++  +G+ PD+ TY+++I G C   RL E   LF+++  + L P+ +T+T 
Sbjct: 464 LEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-----VYEE 122
           LI+A+C EG +D A  +  +M++KG   ++VTY+ LI+G+ K    K A       +YEE
Sbjct: 524 LINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE 583

Query: 123 MCENNISPN 131
              N I+ N
Sbjct: 584 SVPNEITYN 592



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  L  ++ +RG  PD+++Y+TII G+C    L++A QL  ++    + P+  T++
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYS 487

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   CK+ R+ +   +F +ML  G   + VTY+ LI+ Y    ++  A  +++EM + 
Sbjct: 488 SLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQK 547

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             SP+I              R  EA +L   +L    +P+ +  +TL D
Sbjct: 548 GFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLID 596



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++ + G+ P++ TYN +I G+C+   L+  +  F ++      PN +T+  +IDA+C
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYC 249

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K  ++ +A  +   M  KG   N+++Y+ +I+G  +   MK   ++ EEM +    P+  
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRV 309

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       G   +A+ L+  M++NG+ P+ +  +TL +
Sbjct: 310 TFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN 351



 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 16/140 (11%)

Query: 40  LNRLDEAVQ-LFE--KLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
           +N +DE  + LF+  K +  Q K +S  F +++ +  +   ++ A  + +     G    
Sbjct: 107 VNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPG 166

Query: 97  VVTYSCLIDGYFKS-QNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           V++Y+ ++D   ++ Q++K A  +++EM E+ +SPN+            AG     +  +
Sbjct: 167 VLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFF 226

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
             M RNG +P+ +  +T+ D
Sbjct: 227 GEMERNGCLPNVVTYNTIID 246



 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 55/123 (44%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++   +  +G + +   YN II G+  +  +++A  L++++      P+S+T   
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMA 678

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L  +   EG+  +   +    L+            LI    K  NM + F+V ++M  + 
Sbjct: 679 LAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSG 738

Query: 128 ISP 130
           + P
Sbjct: 739 LLP 741


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  +DE  +L   +    ++P+  
Sbjct: 137 KEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVY 196

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  MF +ML+KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 197 TYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 256

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 257 LSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLID 308



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A ++F ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 205 LCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPD 264

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 265 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRK 324

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
            M +  I  +       I+G     R  +A ++   ML  G+ PD
Sbjct: 325 RMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPD 369



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F  +T   L+P+
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPS 159

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G MD+   + + M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 160 VVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFD 219

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM +  + PN              GR   AM++Y  ML   + PD +  +TL  Y L   
Sbjct: 220 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLI-YGLCKK 278

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 279 GDLKQAH 285



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 66/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 275 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+E R  DA  +  +ML  G K +  TY+ +I+ + K  ++ +   + +
Sbjct: 335 DVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLK 394

Query: 122 EM 123
           EM
Sbjct: 395 EM 396


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 103/179 (57%), Gaps = 13/179 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H++ A  L+ ++  +G+ P+++TY+ +I G+  + +L +A+ LF K+    +KP+  
Sbjct: 207 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGY 266

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FCK+ +M +   +F+ M+++G   +VVTY+ L+DGY   + + +A  ++  M
Sbjct: 267 TFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTM 326

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            +  ++P+I              +  +AM L++ M    I+P+ +  ++L D  L  SG
Sbjct: 327 AQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLID-GLSKSG 384



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 2/131 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +F  +   G+ PDI +YN +I G+C + ++D+A+ LF ++ C  + PN
Sbjct: 312 LVKE--VNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPN 369

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID   K GR+  A  +  +M ++G   N++TY+ +ID  FK+  +  A  +  
Sbjct: 370 VVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALIT 429

Query: 122 EMCENNISPNI 132
           +  +  I P++
Sbjct: 430 KFKDQGIQPSM 440



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C +  A     +L   G   D ++Y T+I G C +     A+ L +++    ++ N++ +
Sbjct: 139 CQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMY 198

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +I   CK+  ++DA  ++S+M+ KG   NVVTYS LI G+F    +K A D++ ++  
Sbjct: 199 NTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIIL 258

Query: 126 NNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            NI P+       + G     +  E   ++  M++ GI+PD +  ++L D
Sbjct: 259 ENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMD 308



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 71/119 (59%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  +G+ PD++TYN+++ GYC +  ++ A  +F  +    + P+  ++ ILI+ FC
Sbjct: 287 VFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFC 346

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           K  ++D A  +F++M  K    NVVTY+ LIDG  KS  +  A  + ++M +  + PNI
Sbjct: 347 KIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNI 405



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 16/178 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN----RLDEAVQLFEKLTCVQ 57
           L+K  H    L L  ++  RG++P++   N +I  +C L     ++ +A    +KL  + 
Sbjct: 96  LVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALG 155

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
              + +++  LI   CK G    A  +  ++  K  + N V Y+ +I G  K +++  AF
Sbjct: 156 FHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAF 215

Query: 118 DVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           D+Y EM    ISPN            + G+  +A+ L++ ++   I PDG   + L D
Sbjct: 216 DLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVD 273



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 20/165 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL+L  Q+ DRG+ P+I+TYN+II      +++D+A+ L  K     ++P+
Sbjct: 380 LSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPS 439

Query: 62  SITFTILID--------------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
             T+TILID                     FCK+G  D+A  + SKM +     N VTY 
Sbjct: 440 MYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYE 499

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSM 146
             I     +     A  ++ EM    +    A  P  +M+++ S+
Sbjct: 500 ITIRSLLDNNENDKAEKLFREMITRGLLNRSASYPCSSMKIHQSL 544



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  + + P+++TYN++I G     R+  A+QL +++    + PN +T+  
Sbjct: 351 VDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNS 410

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +IDA  K  ++D A  + +K  ++G + ++ TY+ LIDG  K +      + Y  M    
Sbjct: 411 IIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGF 470

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
                 G   EA+ L   M  +  +P+ +
Sbjct: 471 CK---KGLFDEALSLLSKMKDSSCIPNAV 496


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE ++DDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 325



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRK 341

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
            M + N   +              G+  +A ++   ML  G+ PD 
Sbjct: 342 RMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDA 387



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++     + +
Sbjct: 292 LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EG+  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   +  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 237 EMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 56/103 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A +   ++       D + Y  +I G C   +  +A ++  ++  V LKP++ 
Sbjct: 329 KDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDAR 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML+KG   N VT++ LI G+ K++ +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLID 319



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 336 RMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPD 380



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ D G    +  +N ++  +C    +  A  +F  +T   L+P+
Sbjct: 111 LMKLKYFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M  A  +++
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFD 230

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + PN       IAG     R   AM++Y  ML   + PD +  +TL
Sbjct: 231 EMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  +  +ML  G K +  TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGHVPSVV 417



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 51/96 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 323 KEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VV+
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVS 418


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 137 KDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 196

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE ++DDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 197 TYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQM 256

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 257 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 308



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 205 LCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 264

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 265 LITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRK 324

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
            M + N   +              G   +A ++   ML  G+ PD 
Sbjct: 325 RMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDA 370



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPS 159

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   +  A ++++
Sbjct: 160 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFD 219

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   + PD +  +TL  Y L   
Sbjct: 220 EMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI-YGLCKK 278

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 279 GDLKQAH 285



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++     + +
Sbjct: 275 LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EG   DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 335 DVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 394

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 395 EMQRDGHVPSVV 406



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 55/103 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A +   ++       D + Y  +I G C      +A ++  ++  V LKP++ 
Sbjct: 312 KDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDAR 371

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 372 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +M+DA  +F +ML  G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLID 319



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A +LF ++ + GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G +P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYVPSVV 417



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + +  + G    +  +N ++  +     +  A  +F+ +T   L+P+
Sbjct: 111 LMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + K G +D+   + + M   G + +V TYS LI+G  K   M+ A ++++
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFD 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  N + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 231 EMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HL+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +M++ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ AL +F  +  +G+ P+I TYN++I G C+ +R  EA  +  ++  + + PN
Sbjct: 272 LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 331

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF++LI+ FCKEG + +A  +   M E G + NVVTYS L++GY     +  A  +++
Sbjct: 332 IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFD 391

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P++            A R  EA QL++ M+  G+ PD +  +TL D
Sbjct: 392 VMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLID 445



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 10/168 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A +LF ++  +GL PDI++YNT+I G C L RL EA  LF+ +      P+  
Sbjct: 414 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLC 473

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D FCK+G +  A  +F  M     K N+V Y+ LID   KS+N+K A  ++ E+
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 533

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY-NLQSSG 170
               + PN+        Q+Y +++ NG+  +GLL   L  + N++  G
Sbjct: 534 FVQGLQPNV--------QIYTTII-NGLCKEGLLDEALEAFRNMEEDG 572



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  +  +G +PD+ +YN +I GYC   R+ EA QLF ++    L P+ +++  LID
Sbjct: 386 ARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLID 445

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GR+ +A  +F  ML  G   ++ TYS L+DG+ K   +  AF ++  M    + P
Sbjct: 446 GLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP 505

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+            +    EA +L+  +   G+ P+  + +T+ +
Sbjct: 506 NMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIIN 550



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A++LF  +  RG +PD+ TY TII G C +     A  LF K+     +P+
Sbjct: 202 LCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPD 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ +ID+ CK+ R+++A  +FS M  KG   N+ TY+ LI G       + A  +  
Sbjct: 262 VVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLN 321

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           EM   NI PNI             G   EA  +  +M   G+ P+ +  S+L + Y+LQ+
Sbjct: 322 EMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQA 381



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D    +  ++   GL+  I+T+NT+I G C + +  +AV+LF+ +     +P+  T+T
Sbjct: 172 RVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYT 231

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +F KM E G + +VVTYS +ID   K + +  A D++  M   
Sbjct: 232 TIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK 291

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPNI              R  EA  + + M+   IMP+ +  S L +
Sbjct: 292 GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 340



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 99/182 (54%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  A  +   +T+ G+EP+++TY++++ GY     + EA +LF+ +     KP+  
Sbjct: 344 KEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVF 403

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI+ +CK  R+ +A  +F++M+ +G   ++V+Y+ LIDG  +   ++ A D+++ M
Sbjct: 404 SYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNM 463

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             N   P++             G   +A +L+ +M    + P+ ++ + L D   +S   
Sbjct: 464 LTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNL 523

Query: 172 QE 173
           +E
Sbjct: 524 KE 525



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L  A +LF  +    L+P+++ YN +I   C    L EA +LF +L    L+PN  
Sbjct: 484 KQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQ 543

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +I+  CKEG +D+A   F  M E G   N  +Y+ +I G+ + ++   A  +  EM
Sbjct: 544 IYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEM 603

Query: 124 CENNISPNIA 133
            E     ++A
Sbjct: 604 REKGFVADVA 613



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA + L  Q+   GL PD  T + +I  +  L R+D    +  K+  + L+   +TF  L
Sbjct: 139 DAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTL 198

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+   A  +F  M+ +G + +V TY+ +I+G  K     +A  ++ +M E   
Sbjct: 199 INGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGC 258

Query: 129 SPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
            P++              R  EA+ ++  M   GI P+
Sbjct: 259 QPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPN 296



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A KLF +L  +GL+P++  Y TII G C    LDEA++ F  +      PN  
Sbjct: 519 KSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEF 578

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           ++ ++I  F +      A  +  +M EKG  A+V T
Sbjct: 579 SYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A KLF  L DRG++ ++ +YN +I GYC   ++DEA +LFE++    LKP+++T+ 
Sbjct: 301 QLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYN 360

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI A C+ GR+  A  +F +M   G    + TY  L+DG  K+ +++ A D+++ + + 
Sbjct: 361 TLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKT 420

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              PNI            AG+  EA + +D + +NG+ PD
Sbjct: 421 EHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPD 460



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 12/141 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + DRG  PD  T+  +I G C   ++ EA Q+ E +     +P+ +T+  L++  C  G+
Sbjct: 242 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQ 301

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           ++DAT +F  + ++G K NV +Y+ LI+GY K Q +  AF ++EEM    + P+      
Sbjct: 302 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNT 361

Query: 133 -------AGRPTEAMQLYDSM 146
                  +GR   A +L+  M
Sbjct: 362 LIGALCQSGRVRTAQKLFVEM 382



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++LF ++T++GL  D  TY  +I G C   +   A++L EK+     K +  T+ ++ID
Sbjct: 96  AVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKG-NCKGDVFTYGMIID 154

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK+G   +A  MFS+M+  G   +VV YS L+DG  +   +K A + ++EM    IS 
Sbjct: 155 SLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISA 214

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++            AG   E     + M+  G  PD    + L D
Sbjct: 215 DVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILID 259



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 73/132 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+ LF  +     +P+I  ++ ++ G C   +L+EA + F++++   L+P+
Sbjct: 401 LCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPD 460

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I + ILI+  C +G + +A  +  +M EKG   + +T++ +I    K   +  A  + E
Sbjct: 461 TIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLE 520

Query: 122 EMCENNISPNIA 133
           EM   N SP+ A
Sbjct: 521 EMRNRNFSPDEA 532



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 47/205 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTII---------------------CG------ 36
           K+  +D A +LF ++  +GL+P  +TYNT+I                     CG      
Sbjct: 333 KDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLS 392

Query: 37  -YCSL-------NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            YC L         L+EA+ LF+ +   + KPN   F+IL+D  C+ G++++A   F ++
Sbjct: 393 TYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 452

Query: 89  LEKGPKANVVTYSCLIDGY----FKSQNMKSAFDVYEEMC-ENNISPNI-------AGRP 136
            + G + + + Y+ LI+G       S+ +K  + + E+ C  ++I+ N+           
Sbjct: 453 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 512

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
            EA+QL + M      PD  + S L
Sbjct: 513 HEAIQLLEEMRNRNFSPDEAVTSML 537



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D+ TY  II   C      EA+ +F ++    + P+ + ++ L+D  C+ GR+ +A   F
Sbjct: 145 DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 204

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
            +M  +G  A+V TY+ LI G  ++   K        M +   SP+              
Sbjct: 205 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 264

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           G+  EA Q+ + M   G  PD L  +TL
Sbjct: 265 GKVGEAQQILELMHHKGKEPDILTYNTL 292



 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+KL  Q+ ++G  PD IT+N II      N + EA+QL E++      P+    ++
Sbjct: 477 LSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSM 536

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG 92
           L+     + +   A +     L+KG
Sbjct: 537 LLCLASFDPQWHAALVSLPNALQKG 561


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ AL +F  +  +G+ P+I TYN++I G C+ +R  EA  +  ++  + + PN
Sbjct: 55  LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 114

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF++LI+ FCKEG + +A  +   M E G + NVVTYS L++GY     +  A  +++
Sbjct: 115 IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFD 174

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P++            A R  EA QL++ M+  G+ PD +  +TL D
Sbjct: 175 VMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLID 228



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  +  +G +PD+ +YN +I GYC   R+ EA QLF ++    L P+ +++  LID
Sbjct: 169 ARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLID 228

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GR+ +A  +F  ML  G   ++ TYS L+DG+ K   +  AF ++  M    + P
Sbjct: 229 GLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP 288

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+            +    EA +L+  +   G+ P+
Sbjct: 289 NMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 324



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 75/129 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A +LF ++  +GL PDI++YNT+I G C L RL EA  LF+ +      P+  
Sbjct: 197 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLC 256

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D FCK+G +  A  +F  M     K N+V Y+ LID   KS+N+K A  ++ E+
Sbjct: 257 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 316

Query: 124 CENNISPNI 132
               + PN+
Sbjct: 317 FVQGLQPNM 325



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 13/164 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +  RG +PD+ TY TII G C +     A  LF+K+     +P+ +T++ +ID+ CK+ R
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           +++A  +FS M  KG   N+ TY+ LI G       + A  +  EM   NI PNI     
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
                   G   EA  +  +M   G+ P+ +  S+L + Y+LQ+
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQA 164



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 99/182 (54%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  A  +   +T+ G+EP+++TY++++ GY     + EA +LF+ +     KP+  
Sbjct: 127 KEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVF 186

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI+ +CK  R+ +A  +F++M+ +G   ++V+Y+ LIDG  +   ++ A D+++ M
Sbjct: 187 SYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNM 246

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             N   P++             G   +A +L+ +M    + P+ ++ + L D   +S   
Sbjct: 247 LTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNL 306

Query: 172 QE 173
           +E
Sbjct: 307 KE 308


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL    ++  RG++PD   YN ++ G C   +++EA  LFEK+   ++ PN
Sbjct: 124 LCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPN 183

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK  R++ A  +F +M  KG     V+Y+ LIDG+ K +++ +A DV++
Sbjct: 184 VVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFD 243

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  +N  PN+            +G+   A ++ D M++ G+ P+    S L D
Sbjct: 244 KMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLID 297



 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +LF ++  +G  P  ++YNT+I G+C    L  A  +F+K+      PN
Sbjct: 194 LCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPN 253

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LID   K G++  A  +   M++KG   NV TYSCLIDG+ K + +  A  + E
Sbjct: 254 VVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLE 313

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    I+P +            A +  +A +L+  M +    P  +  +TL
Sbjct: 314 QMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTL 365



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 13/163 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R   PD +TY  I+   C   R+D+A+   E++    +KP++  +  ++   C+E ++++
Sbjct: 108 RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE 167

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT--- 137
           A ++F KM+++    NVVTY+ LI+G  K+  +++A+++++EM      P      T   
Sbjct: 168 ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 227

Query: 138 ---------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
                     A  ++D M+R+  +P+ +  +TL D  L  SG 
Sbjct: 228 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLID-GLSKSGK 269



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 12/157 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA ++   +  +G+ P++ TY+ +I G+C + R+DEA +L E++    + P 
Sbjct: 264 LSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPT 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ IL+++ C+  +++DA  +F  M ++     VVTY+ L+      + +  A  +Y 
Sbjct: 324 VVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYA 383

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSM 146
           EM      P+             AG+  EA +L + M
Sbjct: 384 EMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  + D A KL   +  +  +   I Y+TII   C LNR++EA +L EK+      P+
Sbjct: 55  LCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA-RYAPPD 113

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  +++  CK  R+DDA     +M  +G K +   Y+ ++ G  + + ++ A  ++E
Sbjct: 114 ALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFE 173

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +  I+PN+            A R   A +L+  M   G +P  +  +TL D
Sbjct: 174 KMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 227



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+   +++  + + G       Y  +I   C +   DEA +L   +   + K  +I
Sbjct: 22  KAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAI 81

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ +I+  CK  R+++A  +  KM    P  + +TY  +++   K++ +  A    EEM
Sbjct: 82  AYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGPIVERLCKTKRIDDALATVEEM 140

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               I P+       ++G     +  EA  L++ M++  I P+ +  +TL
Sbjct: 141 ATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTL 190



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 17/161 (10%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R + P   T+NT+  G+    RL++  ++++ +        +  + ILI   CK G  D+
Sbjct: 4   RRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDE 63

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------NISPNI-- 132
           A  +   M  K  K   + YS +I+   K   ++ A ++ E+M            P +  
Sbjct: 64  AYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVER 123

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
                R  +A+   + M   GI PD  +      YN   SG
Sbjct: 124 LCKTKRIDDALATVEEMATRGIKPDAFI------YNFVLSG 158



 Score = 43.5 bits (101), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           CH   LD A +L+ ++  +G  PD ITY+T+  G     ++ EA +L EK+   +  P
Sbjct: 370 CHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 427


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  ALKLFG +  +G EP++ TYN +I G    +R++EA +LF  L    L+P+
Sbjct: 268 LAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPD 327

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T+ ID  CK GR++DA +M   M EKG   +VV+++ +I+G  K + +  A  +  
Sbjct: 328 AITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLS 387

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M     SPN             AG+  +AM  +  ML+ G+ P      T+  YN+   
Sbjct: 388 GMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKP------TVVTYNILVD 441

Query: 170 G 170
           G
Sbjct: 442 G 442



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 20/162 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL +   + ++G  PD++++N +I G C   R+DEA  L   +      PN
Sbjct: 338 LCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPN 397

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I+F  LI   C+ G+   A   F +ML++G K  VVTY+ L+DG  K++          
Sbjct: 398 AISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ--------- 448

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       GR  EA+ L+D+M+  G +PD +  S L D
Sbjct: 449 -----------EGRIKEAITLFDAMIEKGRVPDVVTYSALID 479



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 16/166 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYC-SLNRLDEAVQLFEKLTCVQLKP 60
           L K   +D A  L   + D+G  P++ITY+T+I G C  L RL+ A QL EK+     KP
Sbjct: 200 LCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKP 256

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +++  LI    +E  + +A  +F  +L +G +  V TY+ LIDG  K   +  AF+++
Sbjct: 257 DIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELF 316

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             + ++ + P+             AGR  +A+ +   M   G +PD
Sbjct: 317 SGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 362



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 15/172 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +  A  +F  +   G  P+ ITYN ++ G C+  R+ +A  L+E++      P+
Sbjct: 60  LCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPD 119

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+  FCK G++D+A  +F   +++G   +VVTY+ LI+G+ K+  +  A  + +
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQ 179

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M   ++ P++             GR  EA  L   ++  G  P+ +  STL
Sbjct: 180 RMVSESLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTL 228



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSL---NRLDEAVQLFEKLTCVQLKPNSITFTI 67
           A+  F ++  RG++P ++TYN ++ G C      R+ EA+ LF+ +      P+ +T++ 
Sbjct: 417 AMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSA 476

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID   K G++DDA  +   M  KG   NV TY+ LI G      +  A +++  M E  
Sbjct: 477 LIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKG 536

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P+     T            +A+ L+D  L  G++P   +  +L D
Sbjct: 537 CVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLID 584



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ A +   QL  +GL  DI T+N  I G C  +R+ +A  +F+ +      PN
Sbjct: 26  LLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPN 84

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L+   C  GRM DA  ++ +M++ G   +VVTY+ L+ G+ K   +  A  +++
Sbjct: 85  RITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFD 144

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              +    P++            A +  EA ++   M+   ++PD +  ++L +
Sbjct: 145 GAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVN 198



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 59/105 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L G +  +G  P++ TYN++I G C L+++DEA++LF  +      P+
Sbjct: 481 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPD 540

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           +IT+  +I A CK+  +D A  +F   LE G       Y  LIDG
Sbjct: 541 TITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDG 585



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A+ LF  + ++G  PD++TY+ +I G     +LD+A +L   +      PN  
Sbjct: 448 QEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVY 507

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   C   ++D+A  +F  M+EKG   + +TY  +I    K + +  A  +++  
Sbjct: 508 TYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGS 567

Query: 124 CENNISPN 131
            E  + P 
Sbjct: 568 LEAGVVPT 575



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 41/74 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+LF  + ++G  PD ITY TII   C    +D+A+ LF+      + P S  +  
Sbjct: 522 VDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFS 581

Query: 68  LIDAFCKEGRMDDA 81
           LID  C   R+D+A
Sbjct: 582 LIDGLCAVARVDEA 595


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 95/161 (59%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A ++F ++ + G+ PD+ +Y+ +I G+C   R+D+A ++F+++    + PN  +++I
Sbjct: 296 LDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSI 355

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID FCKEGR+D A  +F +M   G   +V +YS LIDG+ +  +M SA   +EEM  NN
Sbjct: 356 LIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNN 415

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGL 156
            SP+       I G     +   A++ +  M + G+ PD +
Sbjct: 416 FSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTI 456



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 12/139 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +N +I G C    LDEA ++F+++    + P+  +++ILID FC++GR+D A+ +F +M 
Sbjct: 283 FNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMR 342

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
             G   N+ +YS LIDG+ K   +  A +V+EEM  + I P++             G   
Sbjct: 343 NSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMD 402

Query: 138 EAMQLYDSMLRNGIMPDGL 156
            A++ ++ M  N   P   
Sbjct: 403 SAIKFWEEMTSNNFSPSAF 421



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A  LF +++  G  P+++TY   I  Y  LN+ ++A +L+EK+    + P+ I +T+
Sbjct: 611 MTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTM 670

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           LI AFC  G M+ A  +F +M ++G    NVV Y+CLI+ Y K      A  +YEEM   
Sbjct: 671 LIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAK 730

Query: 127 NIS 129
            +S
Sbjct: 731 GLS 733



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 16/173 (9%)

Query: 6   CHLD--AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NS 62
           C +D   A ++ G++   G  P+++TY T I G C +     A +L + L C + +P N+
Sbjct: 222 CSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNL-CRKNQPLNN 280

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             F  +I   C+ G +D+A+ +F +M   G   +V +YS LIDG+ +   +  A +V++E
Sbjct: 281 HCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKE 340

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M  + I PNI             GR  +A+++++ M  +GI+PD    S L D
Sbjct: 341 MRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILID 393



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL+L   +  R + PD++ Y+T+I  +      ++AV LF K+T V +  N  T+TIL
Sbjct: 507 EKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTIL 566

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ F  + +MD A  +F  M E     + + Y+ L+ G+  +  M  A  +++EM     
Sbjct: 567 INLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGC 626

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           SPN+              +  +A +LY+ M   G+ PD +L + L
Sbjct: 627 SPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTML 671



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  + + A+ LF ++T  G+  ++ TY  +I  + S  ++D A +LF+ +   ++ P+ I
Sbjct: 537 KRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQI 596

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T L+  FC  G M  A  +F +M  +G   NVVTY+C I+ Y K      A  +YE+M
Sbjct: 597 AYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKM 656

Query: 124 CENNISPN-------IA-----GRPTEAMQLYDSMLRNG 150
            E  + P+       IA     G    A  L+D M + G
Sbjct: 657 KERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEG 695



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D AL++F ++ + G+ PD+ +Y+ +I G+C    +D A++ +E++T     P++ 
Sbjct: 362 KEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAF 421

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI  + K  +  +A   F  M + G   + +  + ++  Y +  +   A  + E+ 
Sbjct: 422 NYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKF 481

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EN +  N                P +A+QL   ML+  ++PD +  STL
Sbjct: 482 QENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTL 531



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + AL L  +  + G+  +  +YN  I   C  +  ++A+QL   +    + P+ + ++ 
Sbjct: 471 FNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYST 530

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F K    + A M+F KM + G   NV TY+ LI+ +     M  A+ +++ M E+ 
Sbjct: 531 LISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESR 590

Query: 128 ISPN-IA-----------GRPTEAMQLYDSMLRNGIMPD 154
           + P+ IA           G  T A  L+D M R G  P+
Sbjct: 591 VYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPN 629



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 16/172 (9%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  +F +  D G+E +I++ N ++      NR+D    LFE L     +PN  T+TI
Sbjct: 152 LEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTI 211

Query: 68  LIDAFCK----EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++ FC+       +  A+ +  K+   G   NVVTY   I G  K      A+ + + +
Sbjct: 212 MMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNL 271

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           C  N   N              G   EA +++  M  +GI+PD    S L D
Sbjct: 272 CRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILID 323



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 12/164 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK F  +   G+ PD I  N I+  YC     ++A+ L EK     +  N  ++   I 
Sbjct: 439 ALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIH 498

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+    + A  +   ML++    +VV YS LI  + K  N + A  ++ +M +  I+ 
Sbjct: 499 RICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITF 558

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           N+              +   A +L+  M  + + PD +  ++L 
Sbjct: 559 NVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLV 602


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 99/172 (57%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ ++ AA K+F ++  +GL+P+++TYN++I G CS  +LDEA+ L +K++ + LKPN +
Sbjct: 311 RDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVV 370

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK+  + +A  M   + ++G   NV+T++ LID Y K+  M  AF +   M
Sbjct: 371 TYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMM 430

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + PN++            G   EA +L   M  NG+  D +  + L D
Sbjct: 431 LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVD 482



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  P +ITYNTII GYC   ++ +A  L +++   ++ PN ITF ILID FC++  +  A
Sbjct: 259 GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
             +F +M  +G + NVVTY+ LI+G   +  +  A  + ++M    + PN+         
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 138 --------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   EA ++ D + + G+ P+ +  +TL D
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLID 412



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L   + D G+ P++ TYN +I G+C    + EA +L +++    LK + +
Sbjct: 416 KAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+DA CK+G    A  +  +M E G   + +TY+ LIDGYF+  N  +A +V   M
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLM 535

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +     NI             G+  EA +L + ML  G++P+      L D
Sbjct: 536 EKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 587



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  +     ++ ++  R +  +++T++ +I G C + +  +A  + E +      P+
Sbjct: 204 LVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPS 263

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  +ID +CK G+M  A  +  +M+ K    N +T++ LIDG+ + +N+ +A  V+E
Sbjct: 264 VITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFE 323

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM    + PN+             G+  EA+ L D M   G+ P+
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   +D AL+ F +  D G     ++ N ++       R+     +++++   ++  N 
Sbjct: 170 VKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNV 229

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TF ++I+  CK G+   A  +   M   G   +V+TY+ +IDGY K+  M  A  + +E
Sbjct: 230 VTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKE 289

Query: 123 MCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN       I G       T A ++++ M R G+ P+ +  ++L +
Sbjct: 290 MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLIN 342



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 16/134 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A++L  ++ + GL P  +TYN +I GY        A+ +   +     + N
Sbjct: 484 LCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRAN 543

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LI  FC +G++++A  + ++MLEKG   N  TY  L D                
Sbjct: 544 IVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD---------------- 587

Query: 122 EMCENNISPNIAGR 135
           EM E    P+I G 
Sbjct: 588 EMMEKGFIPDIDGH 601



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           I  + ++  Y     +D A++ F++      + ++++   ++ +  KEGR+     ++ +
Sbjct: 160 IIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKE 219

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M+ +    NVVT+  +I+G  K    + A DV E+M     SP++            AG+
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGK 279

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +A  L   M+   I P+ +  + L D
Sbjct: 280 MFKADALLKEMVAKRIHPNEITFNILID 307


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+  L  FG++   G  P+++TYNTII  YC L ++ EA +L   +    L PN I++ 
Sbjct: 218 NLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYN 277

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++I+  C+EG+M + + +  +M ++    + VT++ LI+GY    N   A  ++ EM +N
Sbjct: 278 VVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKN 337

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +SPN+            AG    AM+  D M   G+ P+G   +TL D
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386



 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +    ++  +++ R   PD +T+NT+I GYC++    +A+ L  ++    L PN
Sbjct: 283 LCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPN 342

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI++ CK G ++ A     +M ++G   N  TY+ LIDG+ +   +K A+ + +
Sbjct: 343 VVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMK 402

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM EN  +P I             GR  +A  L   M+  G +PD +  ST+
Sbjct: 403 EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454



 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A++   Q+ DRGL P+  TY T+I G+     L +A Q+ +++      P  I
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTII 414

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+  C  GRM+DA+ +  +M+E+G   +VV+YS +I G+ ++Q ++ AF +  EM
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEM 474

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               ISP++A             R  E   L+  ML  G+ PD +  ++L +
Sbjct: 475 VAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLIN 526



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 22/179 (12%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  LD AL+L  ++  +G  PDI+TYN +I G+   +R  EA +L  KL   +  PN IT
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 65  FTILID---------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +  LID                FC +G M++A  +   ML+KG K N   Y+ +I G+ K
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 110 SQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             N++ A+++Y+EM  +  +P+        M L  S+   G     + L+ L DY L+S
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPH----SVTIMALAKSLYHEG---KEVELNQLLDYTLKS 702



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 77/129 (59%), Gaps = 5/129 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +L  ++  +G+ PD+ TY+++I G C   RL E   LF+++  + L P+ +T+T 
Sbjct: 464 LEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-----VYEE 122
           LI+A+C EG +D A  +  +M++KG   ++VTY+ LI+G+ K    K A       +YEE
Sbjct: 524 LINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE 583

Query: 123 MCENNISPN 131
              N I+ N
Sbjct: 584 SVPNEITYN 592



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  L  ++ +RG  PD+++Y+TII G+C    L++A QL  ++    + P+  T++
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYS 487

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   CK+ R+ +   +F +ML  G   + VTY+ LI+ Y    ++  A  +++EM + 
Sbjct: 488 SLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQK 547

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             SP+I              R  EA +L   +L    +P+ +  +TL D
Sbjct: 548 GFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLID 596



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++ + G+ P++ TYN +I G+C+   L+  +  F ++      PN +T+  +IDA+C
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYC 249

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K  ++ +A  +   M  KG   N+++Y+ +I+G  +   MK   ++ EEM +    P+  
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRV 309

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       G   +A+ L+  M++NG+ P+ +  +TL +
Sbjct: 310 TFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN 351



 Score = 43.9 bits (102), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 16/140 (11%)

Query: 40  LNRLDEAVQ-LFE--KLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
           +N +DE  + LF+  K +  Q K +S  F +++ +  +   ++ A  + +     G    
Sbjct: 107 VNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPG 166

Query: 97  VVTYSCLIDGYFKS-QNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           V++Y+ ++D   ++ Q++K A  +++EM E+ +SPN+            AG     +  +
Sbjct: 167 VLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFF 226

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
             M RNG +P+ +  +T+ D
Sbjct: 227 GEMERNGCLPNVVTYNTIID 246



 Score = 40.4 bits (93), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 55/123 (44%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++   +  +G + +   YN II G+  +  +++A  L++++      P+S+T   
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMA 678

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L  +   EG+  +   +    L+            LI    K  NM + F+V ++M  + 
Sbjct: 679 LAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSG 738

Query: 128 ISP 130
           + P
Sbjct: 739 LLP 741


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL    ++  RG++PD   YN ++ G C   +++EA  LFEK+   ++ PN
Sbjct: 19  LCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPN 78

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK  R++ A  +F +M  KG     V+Y+ LIDG+ K +++ +A DV++
Sbjct: 79  VVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFD 138

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  +N  PN+            +G+   A ++ D M++ G+ P+    S L D
Sbjct: 139 KMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLID 192



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +LF ++  +G  P  ++YNT+I G+C    L  A  +F+K+      PN
Sbjct: 89  LCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPN 148

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LID   K G++  A  +   M++KG   NV TYSCLIDG+ K + +  A  + E
Sbjct: 149 VVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLE 208

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    I+P +            A +  +A +L+  M +    P  +  +TL
Sbjct: 209 QMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTL 260



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 13/163 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R   PD +TY  I+   C   R+D+A+   E++    +KP++  +  ++   C+E ++++
Sbjct: 3   RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE 62

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT--- 137
           A ++F KM+++    NVVTY+ LI+G  K+  +++A+++++EM      P      T   
Sbjct: 63  ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 122

Query: 138 ---------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
                     A  ++D M+R+  +P+ +  +TL D  L  SG 
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLID-GLSKSGK 164



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 12/157 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA ++   +  +G+ P++ TY+ +I G+C + R+DEA +L E++    + P 
Sbjct: 159 LSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPT 218

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ IL+++ C+  +++DA  +F  M ++     VVTY+ L+      + +  A  +Y 
Sbjct: 219 VVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYA 278

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSM 146
           EM      P+             AG+  EA +L + M
Sbjct: 279 EMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           CH   LD A +L+ ++  +G  PD ITY+T+  G     ++ EA +L EK+   +  P
Sbjct: 265 CHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 322


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A+KL  ++ +RG  P+++TYN ++   C L+ +  A  + +K+      PN +TF 
Sbjct: 72  KLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFN 131

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D FCK G +DDA  +   M+ KG + NVVTYS LIDG  KSQ    A +V EEM  +
Sbjct: 132 SLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKAS 191

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++P+             A +  EA Q+   M  +G  PD ++ S++
Sbjct: 192 GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSI 238



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++TY+T+I G C  + L EA +L +++      P+ +T+T +ID  CK GR+++A  +
Sbjct: 301 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 360

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------I 132
              M   G   NVVTY+ LI G  K++ +  A  V EEM      PN            +
Sbjct: 361 LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCV 420

Query: 133 AGRPTEAMQLYDSML--RNGIMPDGLLLSTLADYNLQSSGSQE 173
           +GR  EA QL   M   R    PD     T+ +  + S   QE
Sbjct: 421 SGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQE 463



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++D A KL G +  +G+ P+++TY+ +I G C   +  EA ++ E++    + P++ 
Sbjct: 139 KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAF 198

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI   CK  ++++A  M  +M   G   +VV YS +I  + KS  +  A    +EM
Sbjct: 199 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 258

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNG-IMPDGLLLSTL 161
            +   SP++             G+  EA  + D M  +G ++PD +  ST+
Sbjct: 259 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTV 309



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AAL+L  ++   G  PD  T+  II    +   LD A+     + C    PN +T+T 
Sbjct: 6   LHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGC---DPNVVTYTA 62

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI AF +  ++++A  +  +M E+G   N+VTY+ L+D   K   + +A DV ++M E  
Sbjct: 63  LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +PN+             G   +A +L   M+  G+ P+ +  S L D
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 170



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A ++  ++   G  PD++ Y++II  +C   +L EA +  +++   +  P+
Sbjct: 207 LCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 266

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+  +ID  CK G++ +A ++  +M E G    +VVTYS +I+G  KS  +  A  + 
Sbjct: 267 VVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 326

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + MC+   +P++             GR  EA  L   M R G  P+ +  +TL
Sbjct: 327 DRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTL 379



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KL  ++   G  PD++TY TII G C   RL+EA  L + +      PN
Sbjct: 313 LCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI   CK  ++D+A  +  +M   G   N+VTY+ +++G   S  +K A  + +
Sbjct: 373 VVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQ 432

Query: 122 EMCENNI--SPNIA 133
            M +     SP+ A
Sbjct: 433 RMKDGRAECSPDAA 446



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA  +  ++ + G  P+++T+N+++ G+C    +D+A +L   +    ++PN
Sbjct: 102 LCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 161

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK  +  +A  +  +M   G   +  TYS LI G  K+  ++ A  +  
Sbjct: 162 VVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLR 221

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M  +  +P++            +G+  EA +    M +    PD +  +T+ D
Sbjct: 222 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 275


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P  ++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 129 KDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVY 188

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 189 TYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 248

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M R G+ PD +  +TL D
Sbjct: 249 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLID 300



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 197 LCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 256

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +   M  KG K + +TY+ LIDG  K   + SAF+  +
Sbjct: 257 LITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRK 316

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            + + NI  +              GR  +A ++   ML  G+ PD
Sbjct: 317 RLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPD 361



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 92  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 151

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 152 AVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFD 211

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 212 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI-YGLCKK 270

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 271 GDLKQAH 277



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 67/132 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L   ++ +GL+PD ITY T+I G C    L  A +  ++L    ++ +
Sbjct: 267 LCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLD 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G   +  TY+ +I+ + K  ++     + +
Sbjct: 327 DVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLK 386

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 387 EMQRDGHVPSVV 398



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 56/103 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L +A +   +L    +  D + Y  +I G C   R  +A ++  ++  V L P++ 
Sbjct: 304 KEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTG 363

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 364 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 94/169 (55%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+  L+ F ++      P+++TYNT+I  YC L R+DEA +L   +    L+PN +T+ 
Sbjct: 218 NLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYN 277

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++I+  C+ GR+++ + + ++M  KG   + VTY+ L++GY K  N   A  ++ EM  N
Sbjct: 278 MVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRN 337

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + P++            AG    AM+ +D M   G+ P+G+  ++L +
Sbjct: 338 GLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLIN 386



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +++ ++   G  P I+TYN ++ G+C   R++EA+ L   +    L P+ ++++ 
Sbjct: 394 MDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC+   +D A  M ++M+EKG   + +TYS LI G  + + +  A D+++EM   +
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+              G   EA+ L+D M++ G +PD +  + L +
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLIN 561



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A++ F Q+  RGL P+ +TY ++I G+     +DEA ++++++      P  +
Sbjct: 355 KAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIV 414

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L++  C  GRM++A  +   M  KG   +VV+YS +I G+ + Q +  AF +  EM
Sbjct: 415 TYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEM 474

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  +SP+       I G     R  EA  L+  ML   ++PD    ++L +
Sbjct: 475 VEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLIN 526



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +  ++  +G  PD +TYNT++ GYC +    +A+ L  ++    L P+ +T+T LI+  C
Sbjct: 295 VLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMC 354

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G ++ A   F +M  +G + N VTY+ LI+G+ +   M  A+ +++EM  +   P I 
Sbjct: 355 KAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIV 414

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      +GR  EA+ L   M   G+ PD +  ST+
Sbjct: 415 TYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTI 454



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +   AL L  ++   GL PD++TY ++I   C    L+ A++ F+++    L+PN +
Sbjct: 320 KVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGV 379

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI+ F ++G MD+A  ++ +M+  G    +VTY+ L++G+  S  M+ A  +   M
Sbjct: 380 TYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGM 439

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
               +SP++    T             A Q+   M+  G+ PD +  S+L
Sbjct: 440 EGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSL 489



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 17/170 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+ L   +  +GL PD+++Y+TII G+C    LD A Q+  ++    + P++IT++
Sbjct: 428 RMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYS 487

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C++ R+++A  +F +ML K    +  TY+ LI+GY K  ++  A ++++EM + 
Sbjct: 488 SLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKK 547

Query: 127 NISP------------NIAGRPTEAMQL-----YDSMLRNGIMPDGLLLS 159
              P            N   R  EA +L     YD  + NGI  D L+ S
Sbjct: 548 GFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIES 597



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 28/200 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L+ A  LF ++ ++ L PD  TY ++I GYC    L+EA+ L +++      P+
Sbjct: 493 LCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPD 552

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY-----SC----------LIDG 106
           ++T+ +LI+   K+ R  +A  +  K+       N +TY     SC          LI G
Sbjct: 553 TVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKG 612

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +     M  A  V+E M + N  PN A            G   +A +LY  M+  G +P 
Sbjct: 613 FCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPH 672

Query: 155 GLLLSTLADYNLQSSGSQEH 174
            + +  L    L S G  E 
Sbjct: 673 TVTIIALVK-ALYSEGMDEQ 691



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 23/153 (15%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K++ ++   G+  ++ +YN +I G+C+   L+  ++ FE++   +  PN +T+  +I 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+CK  R+D+A  +   M  +G + N++TY+ +I+G                +C      
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVING----------------LCR----- 285

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              GR  E   +   M R G  PDG+  +TL +
Sbjct: 286 --VGRIEETSGVLAEMDRKGFAPDGVTYNTLVN 316



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++F  +  R  +P+   YN II G+C    + +A +L++++      P+++T   
Sbjct: 619 MNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIA 678

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ A   EG  +   ++   +L     ++      L+    K  N+ + F++  EM ++ 
Sbjct: 679 LVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDG 738

Query: 128 ISPNIAGRPTEAMQ 141
             P+ A  P  A Q
Sbjct: 739 FLPSGAA-PANAGQ 751


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 99/172 (57%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ ++ AA K+F ++  +GL+P+++TYN++I G CS  +LDEA+ L +K++ + LKPN +
Sbjct: 311 RDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVV 370

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK+  + +A  M   + ++G   NV+T++ LID Y K+  M  AF +   M
Sbjct: 371 TYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMM 430

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + PN++            G   EA +L   M  NG+  D +  + L D
Sbjct: 431 LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVD 482



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  P +ITYNTII GYC   ++ +A  L +++   ++ PN ITF ILID FC++  +  A
Sbjct: 259 GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
             +F +M  +G + NVVTY+ LI+G   +  +  A  + ++M    + PN+         
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378

Query: 138 --------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   EA ++ D + + G+ P+ +  +TL D
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLID 412



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  +     ++ ++  R +  +++T++ +I G C + +  +A  + E +      P+
Sbjct: 204 LVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPS 263

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  +ID +CK G+M  A  +  +M+ K    N +T++ LIDG+ + +N+ +A  V+E
Sbjct: 264 VITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFE 323

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM    + PN+             G+  EA+ L D M   G+ P+
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 15/175 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A ++   +  RGL P++IT+NT+I  Y    R+D+A  L   +    + PN  
Sbjct: 381 KKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVS 440

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC+EG + +A  +  +M   G KA++VTY+ L+D   K    + A  + +EM
Sbjct: 441 TYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEM 500

Query: 124 C--------ENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                     N ++ N+        G+  EA +L + ML  G++P+      L D
Sbjct: 501 TLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 555



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   +D AL+ F +  D G     ++ N ++       R+     +++++   ++  N 
Sbjct: 170 VKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNV 229

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TF ++I+  CK G+   A  +   M   G   +V+TY+ +IDGY K+  M  A  + +E
Sbjct: 230 VTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKE 289

Query: 123 MCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN       I G       T A ++++ M R G+ P+ +  ++L +
Sbjct: 290 MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLIN 342



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           I  + ++  Y     +D A++ F++      + ++++   ++ +  KEGR+     ++ +
Sbjct: 160 IIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKE 219

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M+ +    NVVT+  +I+G  K    + A DV E+M     SP++            AG+
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGK 279

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +A  L   M+   I P+ +  + L D
Sbjct: 280 MFKADALLKEMVAKRIHPNEITFNILID 307



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 2   LIKECHLDAALKLFGQLT---DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           L K+     A++L  ++T    +G   +I+TYN +I G+C+  +L+EA +L  ++    L
Sbjct: 484 LCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL 543

Query: 59  KPNSITFTILIDAFCKEGRMDD 80
            PN  T+ IL D   ++G + D
Sbjct: 544 IPNRTTYDILRDEMMEKGFIPD 565


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A +L   LT +G+ PD+ T+N++I G C  N    A++LFE++      P+
Sbjct: 396 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPD 455

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LID+ C  GR+++A  +  +M   G   NVVTY+ LIDG+ K++ ++ A ++++
Sbjct: 456 EFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFD 515

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    IS N+              R  EA QL D ML  G+ PD    ++L  Y
Sbjct: 516 EMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTY 570



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++LF ++  +G  PD  TYN +I   CS  RL+EA+ L +++       N +T+  LID
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK  R+++A  +F +M  +G   NVVTY+ LIDG  K++ ++ A  + ++M    + P
Sbjct: 500 GFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKP 559

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +             AG   +A  +  +M  NG  PD +   TL
Sbjct: 560 DKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTL 602



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  AL++   +   G +PDI TYN++I G C L  ++EAV++  ++      PN++T+ 
Sbjct: 331 HVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYN 390

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   CKE ++++AT +   +  KG   +V T++ LI G   + N + A +++EEM   
Sbjct: 391 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTK 450

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+              GR  EA+ L   M  +G   + +  +TL D
Sbjct: 451 GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 73/125 (58%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ AL L  ++   G   +++TYNT+I G+C   R++EA ++F+++    +  N +T+ 
Sbjct: 471 RLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYN 530

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK  R+++A  +  +ML +G K +  TY+ L+  + ++ ++K A D+ + M  N
Sbjct: 531 TLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSN 590

Query: 127 NISPN 131
              P+
Sbjct: 591 GCEPD 595



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++  RG++PD+ T+N +I   C  +++  A+ + E++    L P+  TFT L+  F +EG
Sbjct: 201 RMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEG 260

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----- 131
            M+ A  +  +M+  G  ++ VT + L+ GY K   ++      +EM      P+     
Sbjct: 261 NMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFN 320

Query: 132 -------IAGRPTEAMQLYDSMLRNGIMPD 154
                    G    A+++ D ML+ G  PD
Sbjct: 321 SLVNGLCRIGHVKHALEILDVMLQEGFDPD 350



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+E +++ AL++  Q+   G     +T N ++ GYC   R++E +   ++++    +P+
Sbjct: 256 FIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPD 315

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  L++  C+ G +  A  +   ML++G   ++ TY+ LI G  K   ++ A ++  
Sbjct: 316 RFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILN 375

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           +M   + SPN     T            EA +L   +   GI+PD
Sbjct: 376 QMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 420



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A ++F ++  +G+  +++TYNT+I G C   R++EA QL +++    LKP+  
Sbjct: 503 KNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKF 562

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE- 122
           T+  L+  FC+ G +  A  +   M   G + + VTY  LI G  K+  ++ A  +    
Sbjct: 563 TYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTV 622

Query: 123 ------MCENNISPNIAG-----RPTEAMQLYDSMLRNGIMPDGL 156
                 +     +P I       R +EA++L+  M+  G  PD +
Sbjct: 623 QLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAV 667



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +L  Q+   GL+PD  TYN+++  +C    + +A  + + +T    +P+
Sbjct: 536 LCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPD 595

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T+  LI    K GR++ A+ +   +  KG      TY+ +I   F+ +    A  ++ 
Sbjct: 596 SVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFR 655

Query: 122 EMCENNISPNI------------AGRPT-EAMQLYDSMLRNGIMPD 154
           EM E    P+              G P  EA+     M   G +PD
Sbjct: 656 EMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPD 701



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +  A+ +  ++   GL PD  T+ T++ G+     ++ A+++ E++       +
Sbjct: 221 LCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSS 280

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T  +L+  +CKEGR+++      +M  +G + +  T++ L++G  +  ++K A ++ +
Sbjct: 281 NVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILD 340

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +    P+I             G   EA+++ + M+     P+ +  +TL
Sbjct: 341 VMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTL 392



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL+ D  TYN ++      N+L     +  ++    +KP+  TF ILI A C+  ++  A
Sbjct: 171 GLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPA 230

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-----ENNISPNI---- 132
            +M  +M   G   +  T++ L+ G+ +  NM  A  + E+M       +N++ N+    
Sbjct: 231 ILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHG 290

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               GR  E +   D M   G  PD    ++L +
Sbjct: 291 YCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVN 324


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 94/205 (45%), Gaps = 54/205 (26%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A K F  L +  +EPDI+TYNT+ICGYCSL RLDEA ++FE L      P
Sbjct: 502 LLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEMLKFTPFGP 561

Query: 61  NSITFTILI---------------------------DAFCKEGRMDDATMMFSKMLEKGP 93
           N++T TILI                           D  CK GR+D+AT +F + ++   
Sbjct: 562 NAVTLTILIHTLCKNSDMDGALRIISPSIISYSIIIDGLCKRGRVDEATNIFHQAIDAKI 621

Query: 94  KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMP 153
             +VV Y+ LI G  K   +  A  +YE                        MLRNG+ P
Sbjct: 622 LPDVVAYAILIRGCCKVGRLVEAALLYEH-----------------------MLRNGVKP 658

Query: 154 DGLLLSTLADYN----LQSSGSQEH 174
           D LL   L++Y     L S G   H
Sbjct: 659 DDLLQRALSEYKPPKWLMSKGVWVH 683



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A ++   + D G  P+++T+ T+I G+C    +D A +LF+ +    + P+ I ++
Sbjct: 158 QIEVASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYS 217

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K G +     +FS+ L KG K +VV +S  ID Y K   + +AFDVY+ M   
Sbjct: 218 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQ 277

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN+             GR  EA  +Y  +L+ G+ P  +  S+L D
Sbjct: 278 GISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLID 326



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L    KLF Q   +G++ D++ +++ I  Y     L  A  +++++ C  + PN +
Sbjct: 225 KAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVV 284

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI   C++GR+ +A  ++ ++L++G + +VVTYS LIDG+ K  N++S F +YE+M
Sbjct: 285 TYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDM 344

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +    P++         L D + + G+M   L  S 
Sbjct: 345 IKMGYPPDVVIYGV----LVDGLCKQGLMLHALRFSV 377



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +  A  ++ Q+  RGLEP ++TY+++I G+C    L     L+E +  +   P+
Sbjct: 293 LCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPD 352

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +L+D  CK+G M  A     K L +  + NVV ++ LIDG+ +      A  V+ 
Sbjct: 353 VVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFR 412

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    I P++A            GR  E + L+  M + G+ PD +   TL D
Sbjct: 413 LMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMD 466



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K  +L  A  ++ ++  +G+ P+++TY  +I G C   R+ EA  ++ ++    L+P+ 
Sbjct: 259 VKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSV 318

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T++ LID FCK G +     ++  M++ G   +VV Y  L+DG  K   M  A     +
Sbjct: 319 VTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVK 378

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               +I PN+              R  EA++++  M   GI PD   ++TL
Sbjct: 379 TLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTL 429



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  AL+   +   + + P+++ +N++I G+C LNR DEA+++F  +    +KP+
Sbjct: 363 LCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPD 422

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T T L+     EGR+ +   +F +M + G + + V +  L+D + K+        +++
Sbjct: 423 VATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFD 482

Query: 122 EMCENNISPNIA-----------GRPT-EAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I  +IA           G+   EA + ++++L   + PD +  +T+
Sbjct: 483 LMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTM 534



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 65/129 (50%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  L   L LF ++   GLEPD + + T++  +C   +    +QLF+ +   ++  + 
Sbjct: 434 VMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADI 493

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
               ++I+   K   +++A+  F+ +LE   + ++VTY+ +I GY   + +  A  ++E 
Sbjct: 494 AVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEM 553

Query: 123 MCENNISPN 131
           +      PN
Sbjct: 554 LKFTPFGPN 562


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A++   ++ +RG+ P+++TY++I+ G+C+L R +EA  LF+++    + P+
Sbjct: 127 LCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPD 186

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TF IL+D   KEG + +A  +F  M+EKG + NV TY+ L+DGY     M  A  ++ 
Sbjct: 187 TVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFN 246

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P++            +GR  EA  L   M    + PD +  STL
Sbjct: 247 IMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTL 298



 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   A  + G +   GL+P+ +T++T++ G  S  ++ +AV+LF+++  +  +P+ IT++
Sbjct: 27  HFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYS 86

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +  KM EKG K NVV YS +ID   K + +  A +   EM   
Sbjct: 87  TIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNR 146

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN+             GR  EA  L+  M+   +MPD +  + L D
Sbjct: 147 GISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVD 195



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +  +D A KLF  +  +G  P + +YN +I G+C   R+DEA  L  +++   L P+++T
Sbjct: 235 QSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVT 294

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ L+  FC++GR  DA  +  +M   G   +++TYS ++DG  K  ++  AF++ + M 
Sbjct: 295 YSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQ 354

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           E+ I PNI             G+   A +L+ ++   GI PD +  + +    L+   S 
Sbjct: 355 ESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSN 414

Query: 173 EHC 175
           E C
Sbjct: 415 EAC 417



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+KLF ++   G EPD+ITY+TII G C +     A+QL +K+     KPN + ++ +ID
Sbjct: 66  AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK+  + +A    S+M+ +G   NVVTYS ++ G+        A  ++++M E N+ P
Sbjct: 126 SLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMP 185

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +              G   EA  ++++M+  G+ P+
Sbjct: 186 DTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPN 221



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L  +++ + L PD +TY+T++ G+C   R  +A +L E++    L P+ +
Sbjct: 269 KSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLM 328

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++I++D  CK+G +D+A  +   M E   + N+  Y+ LI G      +++A +++  +
Sbjct: 329 TYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNL 388

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
               I P++             G   EA +L+  M  +G +P+
Sbjct: 389 FVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPN 431



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL  ++   GL PD++TY+ ++ G C    LDEA +L + +   +++PN   +TILI 
Sbjct: 311 AQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQ 370

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  G+++ A  +FS +  KG + +VVTY+ +I G  K      A +++ +M  +   P
Sbjct: 371 GMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLP 430

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N              G  + A +L + M+  G   D      L+D
Sbjct: 431 NSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ HLD A +L   + +  +EP+I  Y  +I G C+  +L+ A +LF  L    ++P+
Sbjct: 337 LCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPD 396

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T++I    K G  ++A  +F  M   G   N  TY+ +I G+ ++ +  +A  + E
Sbjct: 397 VVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIE 456

Query: 122 EMCENNISPN 131
           EM     S +
Sbjct: 457 EMVGRGFSAD 466



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA +LF  L  +G++PD++TY  +I G       +EA +LF  +      PNS T+ +
Sbjct: 378 LEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNV 437

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +I  F + G   +A  +  +M+ +G  A+  T+  L D
Sbjct: 438 IIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 16/121 (13%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFS---KMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           ++P+  T TILI+ FC     D     FS    M + G + N VT+S L++G      + 
Sbjct: 6   IRPDVYTLTILINCFCHSNH-DHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKII 64

Query: 115 SAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            A  +++EM +    P++             G  T A+QL   M   G  P+ ++ ST+ 
Sbjct: 65  DAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII 124

Query: 163 D 163
           D
Sbjct: 125 D 125


>gi|219885281|gb|ACL53015.1| unknown [Zea mays]
 gi|414866677|tpg|DAA45234.1| TPA: hypothetical protein ZEAMMB73_414823 [Zea mays]
          Length = 559

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+++   +   G EP I TYN+++ G C + RL+EA++L +KL    L P+
Sbjct: 223 LCKRGRVTKAMEVLDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPD 282

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTI++D FCK GR ++AT +F   +  G      TY+ L++G+ K  N   AF +  
Sbjct: 283 IYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLM 342

Query: 122 EMCENNISPNI---------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           EMC NN +  +               AG  + A Q Y  M R G   DG  L TLA
Sbjct: 343 EMCGNNDAACLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLA 398



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 21/163 (12%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD  ++ T +   C     DEA    +++     +P+  TF+ ++   CK GR+  A  +
Sbjct: 176 PDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 235

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
              M   G +  + TY+ L+ G      ++ A ++ +++ ++ ++P+I            
Sbjct: 236 LDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 295

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            GR  EA  ++   +  G+ P      T   YN   +G   HC
Sbjct: 296 VGRTEEATAIFHDAIGMGLSP------TTFTYNALLNG---HC 329


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A KLF ++  R ++P+I+TYN++I G+C  +RLDEA Q+F  +      P+ +
Sbjct: 322 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 381

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK  ++ D   +F  M  +G   N VTY+ LI G+F++ +  +A  V+++M
Sbjct: 382 TYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQM 441

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             + + PNI             G+  +AM +++ + ++ + PD      +  YN+ S G
Sbjct: 442 VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD------IYTYNIMSEG 494



 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++ ++G+ PD+ TY+++I   C+  R  +A +L   +   ++ PN
Sbjct: 250 LCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPN 309

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LIDAF KEG++ +A  +F +M+++    N+VTY+ LI+G+     +  A  ++ 
Sbjct: 310 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 369

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M   +  P++            A +  + M+L+  M R G++ + +  +TL     Q+S
Sbjct: 370 LMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D AL L  ++    +E D++ Y+T+I   C    +D+A+ LF ++    ++P+
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LI   C  GR  DA+ + S MLE+    NVVT++ LID + K   +  A  +++
Sbjct: 275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I PNI              R  EA Q++  M+    +PD +  +TL
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G +PD +T+ T++ G    N+  EAV L E++     +P+ 
Sbjct: 146 CHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDL 205

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +I+  CK G  D A  + +KM +   +A+VV YS +ID   K +++  A +++ E
Sbjct: 206 VTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P++             GR ++A +L   ML   I P+ +  ++L D
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLID 318



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 16/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  AL + G++   G  P I+T N+++ G+C  NR+ EAV L +++  +  +P+
Sbjct: 110 LCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPD 169

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TFT L+    +  +  +A  +  +M+ KG + ++VTY  +I+G  K      A ++  
Sbjct: 170 TVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLN 229

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYN 165
           +M +  I  ++    T            +A+ L+  M   GI PD      L+S L +Y 
Sbjct: 230 KMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 289

Query: 166 LQSSGSQ 172
             S  S+
Sbjct: 290 RWSDASR 296



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 81/142 (57%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  +F Q+   G+ P+I+TYNT++ G C   +L++A+ +FE L   +++P+  T+ I+
Sbjct: 432 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIM 491

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
            +  CK G+++D   +F  +  KG K +V+ Y+ +I G+ K    + A+ ++ +M E+  
Sbjct: 492 SEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGP 551

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            P+     T    L  + LR+G
Sbjct: 552 LPDSGTYNT----LIRAHLRDG 569



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 5/156 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A+ +F  L    +EPDI TYN +  G C   ++++   LF  L+   +KP+
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +  +I  FCK+G  ++A  +F KM E GP  +  TY+ LI  + +  +  ++ ++ +
Sbjct: 520 VIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIK 579

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
           EM     S   AG  +    L   ML +G +  G L
Sbjct: 580 EM----RSCRFAGDAS-TYGLVTDMLHDGRLDKGFL 610



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            ++LF  ++ RGL  + +TY T+I G+   +  D A  +F+++    + PN +T+  L+D
Sbjct: 399 GMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLD 458

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+++ A ++F  + +   + ++ TY+ + +G  K+  ++  +D++  +    + P
Sbjct: 459 GLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKP 518

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           ++             G   EA  L+  M  +G +PD    +TL   +L+
Sbjct: 519 DVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLR 567



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+  ++ TYN +I   C  ++L  A+ +  K+  +   P+ +T   L++ FC   R+ +A
Sbjct: 95  GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 154

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             +  +M+E G + + VT++ L+ G F+      A  + E M      P++         
Sbjct: 155 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               G P  A+ L + M +  I  D ++ ST+ D
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVID 248



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ LFG++      P I+ ++ ++     + + D  +   EK+  + +  N  T+ I
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  C+  ++  A  +  KM++ G   ++VT + L++G+     +  A  + ++M E  
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             P+               + +EA+ L + M+  G  PD
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 204



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 42  RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
           +LDEAV LF ++   +  P+ + F+ L+ A  K  + D       KM   G   N+ TY+
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRN 149
            +I+   +   +  A  +  +M +    P+I              R +EA+ L D M+  
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 150 GIMPDGLLLSTLADYNLQSSGSQE 173
           G  PD +  +TL     Q + + E
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASE 188


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++    L PD+ TY  +I G C+  RL EA +LF+++   ++ P+S+T+  LI 
Sbjct: 392 AMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIH 451

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCKE  ++ A  + S+M   G + N++T+S LIDGY K +N+K+A  +Y EM    I P
Sbjct: 452 GFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVP 511

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++    T            EA++LY  ML  GI P+    + L D
Sbjct: 512 DVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVD 556



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 80/132 (60%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ AL L  ++T  G+EP+IIT++T+I GYC +  +  A+ L+ ++T   + P+ +
Sbjct: 455 KEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVV 514

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LIDA  KE  M +A  ++S MLE G   N  T++CL+DG++K   +  A D Y E 
Sbjct: 515 TYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLEN 574

Query: 124 CENNISPNIAGR 135
            +     +I  R
Sbjct: 575 NQAATGKSIVQR 586



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L AA  LF  +   G++P++  YN +I G C    + EA+ L  ++  + L P+  
Sbjct: 350 KARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVF 409

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI+  C E R+ +A  +F +M  +    + VTY+ LI G+ K  N++ A D+  EM
Sbjct: 410 TYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEM 469

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             + + PNI    T             AM LY  M   GI+PD +  +TL D + + +  
Sbjct: 470 TSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANM 529

Query: 172 QE 173
           +E
Sbjct: 530 KE 531



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L  A +LF ++ +  + P  +TYN++I G+C    +++A+ L  ++T   ++PN
Sbjct: 418 LCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPN 477

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF+ LID +CK   +  A  ++ +M  KG   +VVTY+ LID +FK  NMK A  +Y 
Sbjct: 478 IITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYS 537

Query: 122 EMCENNISPN 131
           +M E  I PN
Sbjct: 538 DMLEAGIHPN 547



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++ A K+F  +   G+ P++ TY+ +I GYC    L +A  L++++   +L PN
Sbjct: 278 LCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPN 337

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  L+D FCK   +  A  +F  M++ G   N+  Y+CLI G  KS NM  A  +  
Sbjct: 338 VVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLS 397

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL-----ADY 164
           EM   N+SP++              R  EA +L+  M    I P  +  ++L      +Y
Sbjct: 398 EMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEY 457

Query: 165 NLQSS 169
           N++ +
Sbjct: 458 NIEKA 462



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 20/190 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ AA+ L+ ++T +G+ PD++TY T+I  +     + EA++L+  +    + PN  TF 
Sbjct: 493 NIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFA 552

Query: 67  ILIDAFCKEGRMDDATMMF--------SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            L+D F KEGR+ DA   +         K + +      V ++CLI+G  ++  +  A  
Sbjct: 553 CLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASR 612

Query: 119 VYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
            + +M    ++P+I              R T+ M L+  M++ GI+P+ ++   LA +  
Sbjct: 613 FFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILPNLMVNQLLAMFYQ 672

Query: 167 QSSGSQEHCI 176
           ++   +  C 
Sbjct: 673 ENGYLRSACF 682



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL  ++T  G++P++  Y   I   C  N+++EA ++FE +    + PN  T++ +ID +
Sbjct: 254 KLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGY 313

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           CK G +  A  ++ ++L      NVV +  L+DG+ K++ + +A  ++  M +  + PN+
Sbjct: 314 CKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNL 373

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       +G   EAM L   M    + PD    + L +
Sbjct: 374 YVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILIN 416



 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD      I+ G     R D     ++ +    L P+   +++L     K+G       +
Sbjct: 196 PDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKL 255

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             +M   G K NV  Y+  I    +   M+ A  ++E M  + + PN+            
Sbjct: 256 LDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCK 315

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G   +A  LY  +L   ++P+ ++  TL D
Sbjct: 316 TGNLRQAYGLYKEILVAELLPNVVVFGTLVD 346



 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 13  KLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           +LF  L D +  +  I  ++ +I  +  +   ++A+ +  ++ C    P+S     +++ 
Sbjct: 151 RLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEDALWVSREMRC---SPDSKACLAILNG 207

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             +  R D   + +  M+ +G   +V  YS L    FK         + +EM    + PN
Sbjct: 208 LVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPN 267

Query: 132 I------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +              +  EA ++++ M  +G++P+    S + D
Sbjct: 268 VYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMID 311


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  L+E  +L   +    ++P+  
Sbjct: 148 KEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 77/129 (59%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   L+   +L   +   G++PD+ TY+ +I G C  +++D+A +LF+++    L PN 
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK GR+D A  ++ +ML +    +++TY+ LI G  K  ++K A D+ +E
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 302 MSMKGLKPD 310



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGI 151
            M + NI   ++A           GR  +A ++   ML  G+
Sbjct: 336 IMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 377



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  + +    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYVPSVV 417



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +C    +  A  +F+ +T   L+P+ ++F  L++ + K G +++ 
Sbjct: 131 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +    +    +  D + Y  +I G C   R  +A ++  ++  V LK    
Sbjct: 323 KEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++    KLF ++  + + PD +TY ++I G C   ++ EA +LF ++    LKP+ +
Sbjct: 369 KSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEV 428

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID +CK G M +A  + ++M+EKG   NVVTY+ L+DG  K   +  A ++  EM
Sbjct: 429 TYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM 488

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  + PN+             G   +A++L + M   G  PD +  +T+ D
Sbjct: 489 SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMD 540



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 17/173 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE H      L  Q+  RG  PD+++Y+ I+ GYC + +L + ++L E+L    LKPN 
Sbjct: 268 VKEAH-----SLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQ 322

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  +I   CK GR+ +A  +   M  +    + V Y+ LI G+ KS N+   + +++E
Sbjct: 323 YTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDE 382

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P+             AG+  EA +L+  ML  G+ PD +  + L D
Sbjct: 383 MKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALID 435



 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 89/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  +++++GL+P++ TYN +I G C +  +++AV+L E++      P++IT+T 
Sbjct: 478 VDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTT 537

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++DA+CK G M  A  +   ML+KG +  +VT++ L++G+  S  ++    + + M +  
Sbjct: 538 IMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKG 597

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           I PN            I       +++Y  M   G++PD
Sbjct: 598 IMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPD 636



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 47/195 (24%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ------------------ 48
            L   LKL  +L  +GL+P+  TYN+II   C   R+ EA Q                  
Sbjct: 302 QLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYT 361

Query: 49  -----------------LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                            LF+++   ++ P+ +T+T +I   C+ G++ +A  +FS+ML K
Sbjct: 362 TLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSK 421

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA 139
           G K + VTY+ LIDGY K+  MK AF ++ +M E  ++PN+             G    A
Sbjct: 422 GLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIA 481

Query: 140 MQLYDSMLRNGIMPD 154
            +L   M   G+ P+
Sbjct: 482 NELLHEMSEKGLQPN 496



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A  L  Q+ ++GL P+++TY  ++ G C    +D A +L  +++   L+PN  
Sbjct: 439 KAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVC 498

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+  CK G ++ A  +  +M   G   + +TY+ ++D Y K   M  A ++   M
Sbjct: 499 TYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIM 558

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  + P I            +G   +  +L   ML  GIMP+    ++L
Sbjct: 559 LDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSL 608



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   + D+GL+P I+T+N ++ G+C    L++  +L + +    + PN+ TF  L+ 
Sbjct: 551 AHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMK 610

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C    M     ++  M  +G   +  TY+ LI G+ K++NMK A+ +++EM E   S 
Sbjct: 611 QYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSL 670

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
             A             +  EA +L++ M  +G + +  +     D N +  G+ E+ +
Sbjct: 671 TAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYE-EGNWENTL 727



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 65/116 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+   +L   + D+G+ P+  T+N+++  YC  N +   +++++ +    + P++ T+ I
Sbjct: 583 LEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNI 642

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           LI   CK   M +A  +  +M+EKG      +Y+ LI G++K +  + A  ++EEM
Sbjct: 643 LIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEM 698



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYC-SLNRLDEAVQLFEKLTCVQLK 59
           +L++   L  A KLF +L + G+   + + N  +     S + +  A ++F + + V + 
Sbjct: 190 VLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSEVGVC 249

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            N++++ I++   C+ G++ +A  +  +M  +G   +VV+YS ++DGY + + +     +
Sbjct: 250 WNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKL 309

Query: 120 YEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EE+    + PN              GR  EA Q+   M    I PD ++ +TL
Sbjct: 310 MEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTL 363



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 58/119 (48%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ A ++++  +  +G+ PD  TYN +I G+C    + EA  L +++        + ++ 
Sbjct: 617 NMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYN 676

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LI  F K  + ++A  +F +M   G  A    Y   +D  ++  N ++  ++ +E  E
Sbjct: 677 SLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIE 735



 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/88 (21%), Positives = 42/88 (47%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++  A  L  ++ ++G      +YN++I G+    + +EA +LFE++          
Sbjct: 649 KARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKE 708

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEK 91
            + I +D   +EG  ++   +  + +EK
Sbjct: 709 IYDIFVDVNYEEGNWENTLELCDEAIEK 736


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ AL +F  +  + + PDI TYN++I G C+  R  EA  L  ++T + + PN
Sbjct: 245 LCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF +L+DA CKEG++ +A  +F  M E G + +VVTYS L+ GY     +  A  +++
Sbjct: 305 IFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFD 364

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P+             A R  EA QL++ M+  G+ PD +  +TL
Sbjct: 365 AMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTL 416



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  +F ++   GL+PD +T+NT+I G C + +  +AV+ F+       +P   T+T
Sbjct: 145 RVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYT 204

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +F KM E G + NVVTY+ LID   K + +  A D++  M   
Sbjct: 205 TIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAK 264

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP+I              R  EA  L + M    IMP+    + L D
Sbjct: 265 RISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVD 313



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  +  +G +PD  +YN +I GYC   R+DEA QLF ++    L P+++ +  LI 
Sbjct: 359 ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIH 418

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GR+ +A  +F  M   G   ++ TYS L+DG+ K   +  AF ++  M    + P
Sbjct: 419 GLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKP 478

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +IA            G   +A +L+  +   G++P+  + +T+
Sbjct: 479 DIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTI 521



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 10/168 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +LF ++  +GL PD + YNT+I G C L RL EA  LF+ +      P+  
Sbjct: 387 KAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLF 446

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++L+D FCKEG +  A  +F  M     K ++  Y+ LID   K  N+K A  ++ E+
Sbjct: 447 TYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSEL 506

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY-NLQSSG 170
               + PN+        Q+Y +++ N +  +GLL   L  + N++  G
Sbjct: 507 FVQGLLPNV--------QIYTTIINN-LCKEGLLDEALEAFRNMEGDG 545



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T+ G+EPD++TY++++ GY     + EA +LF+ +     KP++ 
Sbjct: 317 KEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAF 376

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI  +CK  R+D+A  +F++M+ +G   + V Y+ LI G  +   ++ A D+++ M
Sbjct: 377 SYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNM 436

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N   P++             G   +A +L+  M    + PD  + + L D
Sbjct: 437 HSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILID 488



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A  LF  +   G  PD+ TY+ ++ G+C    L +A +LF  +    LKP+   + 
Sbjct: 425 RLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYN 484

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILIDA CK G + DA  +FS++  +G   NV  Y+ +I+   K   +  A + +  M  +
Sbjct: 485 ILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGD 544

Query: 127 NISPN 131
              P+
Sbjct: 545 GCPPD 549



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +L  A +LF  +    L+PDI  YN +I   C    L +A +LF +L    L PN  
Sbjct: 457 KEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQ 516

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +I+  CKEG +D+A   F  M   G   +  +Y+ +I G+ + ++   A  +  EM
Sbjct: 517 IYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEM 576



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A KLF +L  +GL P++  Y TII   C    LDEA++ F  +      P+  ++ 
Sbjct: 495 NLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYN 554

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           ++I  F +      A  +  +M ++G  A   T
Sbjct: 555 VIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+KL  ++ +RG  P+++TYN ++   C L+ +  A  + +K+      PN +TF  
Sbjct: 195 LEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNS 254

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCK G +DDA  +   M+ KG + NVVTYS LIDG  KSQ    A +V EEM    
Sbjct: 255 LVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRG 314

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++P+             A +  EA Q+   M  +G  PD ++ S++
Sbjct: 315 VTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSI 360



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++TY+T+I G C  + L EA +L +++      P+ +T+T +ID  CK GR+++A  +
Sbjct: 423 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 482

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------I 132
              M   G   NVVTY+ LI G  K++ +  A  V EEM      PN            +
Sbjct: 483 LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCV 542

Query: 133 AGRPTEAMQLYDSML--RNGIMPDGLLLSTLADYNLQSSGSQE 173
           +GR  EA QL   M   R    PD     T+ +  + S   QE
Sbjct: 543 SGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQE 585



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++D A KL G +  +G+ P+++TY+ +I G C   +  EA ++ E++    + P++ 
Sbjct: 261 KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAF 320

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI   CK  ++++A  M  +M   G   +VV YS +I  + KS  +  A    +EM
Sbjct: 321 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 380

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNG-IMPDGLLLSTL 161
            +   SP++             G+  EA  + + M  +G ++PD +  ST+
Sbjct: 381 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTV 431



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AAL+L  ++   G  PD  T+  II    +   LD A+     + C    PN +T+T 
Sbjct: 128 LHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGC---DPNVVTYTA 184

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI AF +  ++++A  +  +M E+G   N+VTY+ L+D   K   + +A DV ++M E  
Sbjct: 185 LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 244

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +PN+             G   +A +L   M+  G+ P+ +  S L D
Sbjct: 245 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 292



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A ++  ++   G  PD++ Y++II  +C   +L EA +  +++   +  P+
Sbjct: 329 LCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 388

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+  +ID  CK G++ +A ++  +M E G    +VVTYS +I+G  KS  +  A  + 
Sbjct: 389 VVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 448

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + MC+   +P++             GR  EA  L   M R G  P+ +  +TL
Sbjct: 449 DRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTL 501



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KL  ++   G  PD++TY TII G C   RL+EA  L + +      PN
Sbjct: 435 LCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 494

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI   CK  ++D+A  +  +M   G   N+VTY+ +++G   S  +K A  + +
Sbjct: 495 VVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQ 554

Query: 122 EMCENNI--SPNIA 133
            M +     SP+ A
Sbjct: 555 RMKDGRAECSPDAA 568



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA  +  ++ + G  P+++T+N+++ G+C    +D+A +L   +    ++PN
Sbjct: 224 LCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 283

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK  +  +A  +  +M  +G   +  TYS LI G  K+  ++ A  +  
Sbjct: 284 VVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLR 343

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M  +  +P++            +G+  EA +    M +    PD +  +T+ D
Sbjct: 344 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 397


>gi|212275248|ref|NP_001130560.1| uncharacterized protein LOC100191659 [Zea mays]
 gi|194689480|gb|ACF78824.1| unknown [Zea mays]
          Length = 558

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+++   +   G EP I TYN+++ G C + RL+EA++L +KL    L P+
Sbjct: 222 LCKRGRVTKAMEVLDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTI++D FCK GR ++AT +F   +  G      TY+ L++G+ K  N   AF +  
Sbjct: 282 IYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLM 341

Query: 122 EMCENNISPNI---------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           EMC NN +  +               AG  + A Q Y  M R G   DG  L TLA
Sbjct: 342 EMCGNNDAACLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLA 397



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD  ++ T +   C     DEA    +++     +P+  TF+ ++   CK GR+  A  +
Sbjct: 175 PDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 234

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
              ML  G +  + TY+ L+ G      ++ A ++ +++ ++ ++P+I            
Sbjct: 235 LDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 294

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            GR  EA  ++   +  G+ P      T   YN   +G   HC
Sbjct: 295 VGRTEEATAIFHDAIGMGLSP------TTFTYNALLNG---HC 328


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 95/176 (53%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            M   ++SP++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 266 LMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++ +    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++  +  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKLMLSQSLSPDLITYNTL 282



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 17/160 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  G +PD++T++T++ G C  +R+ EA+ LF ++     +PN +TFT 
Sbjct: 128 LPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMC----RPNVVTFTT 183

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G + N +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 184 LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMS 243

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR ++A  LY  M   GI PD
Sbjct: 244 HIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPD 283



 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 78/130 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ P+ ITY+++I G C  +RLDEA Q+F+ +      P+
Sbjct: 515 LINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPD 574

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  L+  +CK GR+DD   +F +M  +G  A+ +TY  LI G+ K  N+  A D+++
Sbjct: 575 VVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQ 634

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 635 EMISSGVYPD 644



 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L +E  +  A+ L  ++ + GL+P+ ITY TI+ G C +     A+ L  K+  +  +KP
Sbjct: 188 LCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKP 247

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + ++ +ID   K+GR  DA  ++++M EKG   ++ TY+C+IDG+  S     A  + 
Sbjct: 248 NVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLL 307

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +EM E  I+PN+                 EA +LYD ML  GI+P+ +  +++ D
Sbjct: 308 QEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMID 362



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 29/191 (15%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE     A +L+ ++  RG+ P+ ITYN++I G+C  NRLD A  +F  +      P+ 
Sbjct: 330 VKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDV 389

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            TF  LID +C   R+DD T +  +M E G  A+  TY+ LI G+    ++ +A D+ ++
Sbjct: 390 FTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQ 449

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLR-----------NGIMPDGLLLS 159
           M  + + P+I             G+  +A++++ +M +           NG+ PD     
Sbjct: 450 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPD----- 504

Query: 160 TLADYNLQSSG 170
            +  YN+  SG
Sbjct: 505 -VQTYNILISG 514



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A  L+ ++ ++G+ PD+ TYN +I G+CS  R  EA +L +++   ++ PN
Sbjct: 259 LWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPN 318

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI+A+ KE +  +A  ++ +ML +G   N +TY+ +IDG+ K   + +A  ++ 
Sbjct: 319 VVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFY 378

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP++            A R  +  +L   M   G++ D    +TL
Sbjct: 379 VMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTL 430



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +I G  +  +  EA +L++++    + PN+IT++ +I+  CK+ R+D+A
Sbjct: 500 GVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEA 559

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    +VVT++ L+ GY K+  +    +++ EM    I  +          
Sbjct: 560 TQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHG 619

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + + ++
Sbjct: 620 FRKVGNINGALDIFQEMISSGVYPDTITIRSM 651



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 23/181 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  PD+ T+NT+I GYC   R+D+  +L  ++T   L  ++ 
Sbjct: 366 KQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTT 425

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC  G ++ A  +  +M+  G   ++VT + L+DG   +  +K A ++++ M
Sbjct: 426 TYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAM 485

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY  M   GI+P+ +  S+
Sbjct: 486 QKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSS 545

Query: 161 L 161
           +
Sbjct: 546 M 546



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ LF  +      P +I +N ++     + R D  + L++K+   Q+  +  +F I
Sbjct: 58  LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC   ++  A   F K+ + G + +VVT+S L+ G      +  A D++ +MC  N
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPN 177

Query: 128 ISPNIA--------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             GR  EA+ L D M+ +G+ P+ +   T+ D
Sbjct: 178 VVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 221



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   PD++T+NT++ GYC   R+D+ ++LF ++    +  +
Sbjct: 550 LCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVAD 609

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ A  +F +M+  G   + +T   ++   +  + +K A  + E
Sbjct: 610 AITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLE 669

Query: 122 EM 123
           ++
Sbjct: 670 DL 671


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K   +  A ++Y+ M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M+  G+ PD +  +TL D
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLID 325



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M+ KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLK 411

Query: 122 EMCENNISPNIA 133
           EM  N   P++ 
Sbjct: 412 EMQRNGHVPSVV 423



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +  TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFD 236

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTL 288



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 15/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL   G++  +G  PD+ TY  +I   C  NRL EA +  E++    L PN
Sbjct: 21  LCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPN 80

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+T+LID  CK GR+D+A  + SKM +K  P A  VTY+ LI G  K++    A+D+ 
Sbjct: 81  VVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTA--VTYNSLISGLCKAERASEAYDLL 138

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM  +   P+I            + +  +A+++++ ++  G  PD +  S L D
Sbjct: 139 EEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLID 193



 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 10/178 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  ++ + G  PD++TY T++ G+C L RLD+A  L  ++T   L P+ +TFT 
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEM-CE 125
           L+D  C+E R+ DA  +  +M  K     V TY+ ++DGY ++  ++ A   + EEM C 
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP 356

Query: 126 NN-ISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            N +S NI         R +EAM+L +   R    PD ++ +T+ D   +     E C
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEAC 414



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 14/173 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++  + + P  +TYN++I G C   R  EA  L E++      P+
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPD 149

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LI  FCK  + DDA  +F +++ +G + +VVTYSCLIDG  K   +K A D++ 
Sbjct: 150 IFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFG 209

Query: 122 EMCEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M ++ +  PN              G+  EAM L + M   G  PD +  +TL
Sbjct: 210 RMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L KE  L  A+ LFG++   G   P+ +TYN++I G+C + ++DEA+ L E++      P
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T L++ FCK  R+DDA  + ++M  KG   +VVT++ L+DG  +   +  A  + 
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 121 EEMCENNISPNI 132
            EM   + SP +
Sbjct: 315 GEMRRKSCSPTV 326



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A  L  Q+T +GL PD++T+ +++ G C  NRL +AV +  ++      P   
Sbjct: 268 KLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVY 327

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++D +C+  ++++A     + ++  P  NVV+++ +I G  K      A ++ EE 
Sbjct: 328 TYNTILDGYCRANQLEEARKFMLEEMDCPP--NVVSFNIMIRGLCKVNRSSEAMELVEEA 385

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRN-GIMPDGLLLSTLA 162
                +P++    T            EA ++Y  ML   G +P+ +  STL 
Sbjct: 386 RRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLV 437



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKP 60
           L +E  L  A+ + G++  +   P + TYNTI+ GYC  N+L+EA + + E++ C    P
Sbjct: 301 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDC---PP 357

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N ++F I+I   CK  R  +A  +  +   +    +VV Y+ +IDG  + + +  A  VY
Sbjct: 358 NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVY 417

Query: 121 EEMCE 125
            +M E
Sbjct: 418 RKMLE 422



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D +TY ++I G C + RL++A+    K+      P+  T+T +I A C E R+ +A    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-----------AG 134
            +M  +    NVVTY+ LIDG  K   +  A  +  +M +  +   +           A 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAE 129

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           R +EA  L + M+ +G +PD    +TL
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTL 156



 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 11/120 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQLKPNSITFT 66
           A++L  +   R   PD++ Y T+I G C   ++DEA +++ K+     C+   PNSIT++
Sbjct: 378 AMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCL---PNSITYS 434

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+   C  G +D A       +EKG   N+ TY+ LID + K+   + A ++ ++M + 
Sbjct: 435 TLVTGLCNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 2   LIKECHLDAALKLFGQ-LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L +E  +D A +++ + L + G  P+ ITY+T++ G C+   LD A    EK  CV   P
Sbjct: 404 LCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEK-GCV---P 459

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           N  T+ +LIDAF K  R +DA  +   M+++G
Sbjct: 460 NIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+LF Q+ + G  PD+ TY  ++  +C + +  EA++ FE++    ++PN  T+T+
Sbjct: 276 IDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTV 335

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID FCK G+MD+   M S MLEKG  ++VV ++ LIDGY K   M+ A  V + M  N 
Sbjct: 336 LIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNK 395

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN       I G         AM L + M  N + P+ +  +TL
Sbjct: 396 VCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTL 441



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A   F  L   G   D  TY ++I GYC ++ L +A ++FE +       N +++T LI
Sbjct: 208 VAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLI 267

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC+ G++D+A  +F +M E G   +V TY+ L+  + +      A   +EEM EN I 
Sbjct: 268 HGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIE 327

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           PN+             G+  E M++  +ML  G++   +  + L D
Sbjct: 328 PNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALID 373



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  ++ +  L P+++TYNT+I G C    +D A +L   +      P+  TF  
Sbjct: 416 MDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCA 475

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--- 124
            ID  CK G+++ A  +F  + EK  +AN   Y+ LIDGY K++    A  +++ M    
Sbjct: 476 FIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEG 535

Query: 125 --ENNISPNI-------AGRPTEAMQLYDSM 146
              N+I+ N+        G+  +AM L D M
Sbjct: 536 CFPNSITFNVLLDGLRKEGKVEDAMSLVDVM 566



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF  + + G+EP++I++NT++  +C +  +  A   F  L       +S T+T LI  +C
Sbjct: 177 LFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYC 236

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K   + DA  +F  M ++G   N V+Y+ LI G+ +   +  A +++ +M E+   P++ 
Sbjct: 237 KIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVP 296

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                       G+ TEA++ ++ M+ NGI P+    + L DY
Sbjct: 297 TYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDY 339



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 4/149 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A K+F  +   G   + ++Y  +I G+C + ++DEA++LF ++      P+  T+T+
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTV 300

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ AFC+ G+  +A   F +M+E G + NV TY+ LID + K   M    ++   M E  
Sbjct: 301 LVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKG 360

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           +  ++   P  A  L D   + G+M D +
Sbjct: 361 LVSSVV--PFNA--LIDGYCKRGMMEDAI 385



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  +++   + ++GL   ++ +N +I GYC    +++A+ + + +   ++ PNS T+  
Sbjct: 346 MDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNE 405

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC++  MD A  + +KM E     N+VTY+ LI G  K++ + SA+ ++  M ++ 
Sbjct: 406 LICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDG 465

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P+              G+  +A Q+++S+       +  L + L D
Sbjct: 466 FVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALID 513



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A ++F  L ++  E +   Y  +I GYC   +  +A  LF+++      PN
Sbjct: 480 LCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPN 539

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SITF +L+D   KEG+++DA  +   M +   K  V TY+ LI+   +  +   A    +
Sbjct: 540 SITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLD 599

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  +   PN+             GR  EA ++   +   GI+ D  +   L +
Sbjct: 600 QMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVN 653



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 66/125 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D+A +L   +   G  PD  T+   I   C + ++++A Q+FE L     + N   +T 
Sbjct: 451 VDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTA 510

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK  +  DA ++F +ML +G   N +T++ L+DG  K   ++ A  + + M + +
Sbjct: 511 LIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFD 570

Query: 128 ISPNI 132
             P +
Sbjct: 571 AKPTV 575



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 73/219 (33%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------- 54
           +++E   D A     Q+   G +P+++TY   I  YC   RL EA ++  K+        
Sbjct: 585 ILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLD 644

Query: 55  ------------CV-QL---------------KPNSITFTILI-----DAFCKEG----- 76
                       C+ QL               +P+  T++IL+     + + KEG     
Sbjct: 645 SFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDL 704

Query: 77  -----RMDDA-----------TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
                 +D+A           TM+F KM+E+G   NV TYS LI G  K +++  AF ++
Sbjct: 705 NSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLF 764

Query: 121 EEMCENNISP--NIA----------GRPTEAMQLYDSML 147
             M E+ ISP  NI           G   EA++L DSM+
Sbjct: 765 NHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMM 803



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 57/110 (51%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ ++G  P++ TY+ +I G C +  L  A +LF  +    + P+      L+ + C
Sbjct: 728 LFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCC 787

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           K G  ++A  +   M+E    A++ +Y  L+ G F+  N + A +++  +
Sbjct: 788 KLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSL 837



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A+ L   +     +P + TY  +I      +  D A    +++     +PN
Sbjct: 550 LRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPN 609

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T  I A+C++GR+ +A  M  K+ E+G   +   Y  L++ Y     + SAF V  
Sbjct: 610 VVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLI 669

Query: 122 EMCENNISPN 131
            M +    P+
Sbjct: 670 RMFDTGCEPS 679



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 51/105 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL  A +LF  + + G+ P    +N+++   C L   +EA++L + +       +
Sbjct: 751 LCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAH 810

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             ++ +L+    ++G  + A  +F  +L  G   + V +  L+DG
Sbjct: 811 LESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDG 855


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   + AA K F ++  R + PD++TY  II G+C +  + EA +LF ++ C  L+P+ I
Sbjct: 786 KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDII 845

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT L++ +CK G + DA  + + M++ G   NVVTY+ LIDG  K  ++ SA ++  EM
Sbjct: 846 TFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 905

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + PNI            +G   EA++L       G+  D +  +TL D
Sbjct: 906 WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 957



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L KE  LD+A +L  ++   GL+P+I TYN+I+ G C    ++EAV+L  +     L  +
Sbjct: 889  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 948

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++T+T L+DA+CK G MD A  + ++ML KG +  +VT++ L++G+     ++    +  
Sbjct: 949  TVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1008

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
             M    I+PN            I      A  +Y  M   G+ PDG
Sbjct: 1009 WMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDG 1054



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 84/153 (54%), Gaps = 12/153 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G  PD+I+Y+T+I GYC    LD+  +L EK+    LKPNS T+  +I   C+  ++ +
Sbjct: 698 KGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAE 757

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A   FS+M+ +G   + + Y+ L+DG+ K  ++++A   + EM   +I+P++        
Sbjct: 758 AEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 817

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                G   EA +L+  ML  G+ PD +  + L
Sbjct: 818 GFCQIGDMVEAGKLFHEMLCRGLEPDIITFTEL 850



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 99/188 (52%), Gaps = 13/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L + C L  A + F ++  +G+ PD I Y T++ G+C    +  A + F ++    + P
Sbjct: 748 LLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITP 807

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T +I  FC+ G M +A  +F +ML +G + +++T++ L++GY K+ ++K AF V+
Sbjct: 808 DVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVH 867

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             M +   SPN+    T             A +L   M + G+ P+    +++ +  L  
Sbjct: 868 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVN-GLCK 926

Query: 169 SGSQEHCI 176
           SG+ E  +
Sbjct: 927 SGNIEEAV 934



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD   KL  ++  +GL+P+  TY +II   C + +L EA + F ++    + P++I +T 
Sbjct: 720 LDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTT 779

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCK G +  A+  F +M  +    +V+TY+ +I G+ +  +M  A  ++ EM    
Sbjct: 780 LVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRG 839

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+I            AG   +A ++++ M++ G  P+ +  +TL D
Sbjct: 840 LEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLID 887



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K  H+  A ++   +   G  P+++TY T+I G C    LD A +L  ++  + L+PN  
Sbjct: 856  KAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 915

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+  +++  CK G +++A  +  +    G  A+ VTY+ L+D Y KS  M  A ++  EM
Sbjct: 916  TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEM 975

Query: 124  CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
                + P I             G   +  +L + ML  GI P+    + L 
Sbjct: 976  LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLV 1026



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   +D A ++  ++  +GL+P I+T+N ++ G+C    L++  +L   +    + PN+ 
Sbjct: 961  KSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 1020

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            TF  L+  +C    +  AT ++  M  +G + +  TY  L+ G+  ++NMK A+ +++EM
Sbjct: 1021 TFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEM 1080

Query: 124  CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 S +++             +  EA +++D M R+G+  D  +    +D
Sbjct: 1081 KGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSD 1132



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 60/120 (50%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +L AA  ++  +  RG+EPD  TY  ++ G+C+   + EA  LF+++       +  T++
Sbjct: 1034 NLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYS 1093

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +LI  F K  +  +A  +F +M   G  A+   +    D  +K +   +  D  +E+ EN
Sbjct: 1094 VLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 1153


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 15/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL   G++  +G  PD+ TY  +I   C  NRL EA +  E++    L PN
Sbjct: 21  LCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPN 80

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+T+LID  CK GR+D+A  + SKM +K  P A  VTY+ LI G  K++    A+D+ 
Sbjct: 81  VVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTA--VTYNSLISGLCKAERASEAYDLL 138

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM  +   P+I            + +  +A+++++ ++  G  PD +  S L D
Sbjct: 139 EEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLID 193



 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 10/178 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  ++ + G  PD++TY T++ G+C L RLD+A  L  ++T   L P+ +TFT 
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEM-CE 125
           L+D  C+E R+ DA  +  +M  K     V TY+ ++DGY ++  ++ A   + EEM C 
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP 356

Query: 126 NN-ISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            N +S NI         R +EAM+L +   R    PD ++ +T+ D   +     E C
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEAC 414



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 14/173 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++  + + P  +TYN++I G C   R  EA  L E++      P+
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPD 149

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LI  FCK  + DDA  +F +++ +G + +VVTYSCLIDG  K   +K A D++ 
Sbjct: 150 IFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFG 209

Query: 122 EMCEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M ++ +  PN              G+  EAM L + M   G  PD +  +TL
Sbjct: 210 RMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L KE  L  A+ LFG++   G   P+ +TYN++I G+C + ++DEA+ L E++      P
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T L++ FCK  R+DDA  + ++M  KG   +VVT++ L+DG  +   +  A  + 
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 121 EEMCENNISPNI 132
            EM   + SP +
Sbjct: 315 GEMRRKSCSPTV 326



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 15/171 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A  L  Q+T +GL PD++T+ +++ G C  NRL +AV +  ++      P   
Sbjct: 268 KLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVY 327

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++D +C+  ++++A     + ++  P  NVV+++ +I G  K      A ++ EE 
Sbjct: 328 TYNTILDGYCRANQLEEARKFMLEEMDCPP--NVVSFNIMIRGLCKVNRSSEAMELVEEA 385

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRN-GIMPDGLLLSTL 161
                +P++    T            EA ++Y  ML   G +P+ +  STL
Sbjct: 386 RRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTL 436



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKP 60
           L +E  L  A+ + G++  +   P + TYNTI+ GYC  N+L+EA + + E++ C    P
Sbjct: 301 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDC---PP 357

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N ++F I+I   CK  R  +A  +  +   +    +VV Y+ +IDG  + + +  A  VY
Sbjct: 358 NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVY 417

Query: 121 EEMCE 125
            +M E
Sbjct: 418 RKMLE 422



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D +TY ++I G C + RL++A+    K+      P+  T+T +I A C E R+ +A    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-----------AG 134
            +M  +    NVVTY+ LIDG  K   +  A  +  +M +  +   +           A 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAE 129

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           R +EA  L + M+ +G +PD    +TL
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTL 156



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 11/120 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQLKPNSITFT 66
           A++L  +   R   PD++ Y T+I G C   ++DEA +++ K+     C+   PNSIT++
Sbjct: 378 AMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCL---PNSITYS 434

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C  G +D A       +EKG   N+ TY+ LID + K+   + A ++ ++M + 
Sbjct: 435 TLITGLCNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 2   LIKECHLDAALKLFGQ-LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L +E  +D A +++ + L + G  P+ ITY+T+I G C+   LD A    EK  CV   P
Sbjct: 404 LCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEK-GCV---P 459

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           N  T+ +LIDAF K  R +DA  +   M+++G
Sbjct: 460 NIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++PDI TY+++I G+C  +RLDEA  +FE +      PN
Sbjct: 336 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 395

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R+D+   +F +M ++G   N VTY+ LI G+F+++   +A  V++
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFK 455

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M  + + P+I             G+   A+ +++ + R+ + PD
Sbjct: 456 QMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPD 500



 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL L  ++    +EP ++ YNTII   C+   +++A+ LF ++    ++PN
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   C  GR  DA+ + S M+E+    NVVT+S LID + K   +  A  +Y+
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I P+I              R  EA  +++ M+     P+ +  +TL
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L GQ+ + G +PD  T+NT+I G    NR  EAV L +++     +P+ 
Sbjct: 162 CHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDL 221

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+ I+++  CK G +D A  +  KM +   +  VV Y+ +ID     +N+  A +++ E
Sbjct: 222 VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN+             GR ++A +L   M+   I P+ +  S L D
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID 334



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +      A+ L  ++  +G +PD++TY  ++ G C    +D A+ L +K+   +++P 
Sbjct: 196 LFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPG 255

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +IDA C    ++DA  +F++M  KG + NVVTY+ LI           A  +  
Sbjct: 256 VVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 315

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E  I+PN+             G+  EA +LYD M++  I PD    S+L
Sbjct: 316 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 47/204 (23%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ AL LF ++ ++G+ P+++TYN++I   C+  R  +A +L   +   ++ PN +TF+
Sbjct: 271 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 330

Query: 67  ILIDAFCKEG-----------------------------------RMDDATMMFSKMLEK 91
            LIDAF KEG                                   R+D+A  MF  M+ K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 390

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------------EA 139
               NVVTY+ LI G+ K++ +    +++ EM +  +  N     T             A
Sbjct: 391 DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNA 450

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
             ++  M+ +G++PD +  S L D
Sbjct: 451 QIVFKQMVSDGVLPDIMTYSILLD 474



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 16/185 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  AL +  ++   G EPDI+T N+++ G+C  NR+ +AV L  ++  +  +P+S 
Sbjct: 128 RRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSF 187

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI    +  R  +A  +  +M+ KG + ++VTY  +++G  K  ++  A  + ++M
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM 247

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQ 167
            +  I P +    T            +A+ L+  M   GI P+ +    L+  L +Y   
Sbjct: 248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307

Query: 168 SSGSQ 172
           S  S+
Sbjct: 308 SDASR 312



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 83/147 (56%), Gaps = 6/147 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +EC  D A  +F Q+   G+ PDI+TY+ ++ G C+  +++ A+ +FE L   +++P+  
Sbjct: 445 REC--DNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIY 502

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I+I+  CK G+++D   +F  +  KG K NVVTY+ ++ G+ +    + A  ++ EM
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNG 150
            E    P+     T    L  + LR+G
Sbjct: 563 KEEGPLPDSGTYNT----LIRAHLRDG 585



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  ++LF +++ RGL  + +TY T+I G+      D A  +F+++    + P+ +
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  C  G+++ A ++F  +     + ++ TY+ +I+G  K+  ++  +D++  +
Sbjct: 468 TYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+             G   EA  L+  M   G +PD    +TL   +L+
Sbjct: 528 SLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLR 583



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 68/116 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL +F  L    +EPDI TYN +I G C   ++++   LF  L+   +KPN +T+T 
Sbjct: 482 VETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 541

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  FC++G  ++A  +F +M E+GP  +  TY+ LI  + +  +  ++ ++  EM
Sbjct: 542 MMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + +  LD A+ LFG +      P I+ ++ ++     +N+ D  + L E++  + +  N 
Sbjct: 57  LNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNL 116

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++ILI+ FC+  ++  A  + +KM++ G + ++VT + L++G+     +  A  +  +
Sbjct: 117 YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176

Query: 123 MCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           M E    P+       I G     R +EA+ L D M+  G  PD
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPD 220



 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  Q+ + G+  ++ TY+ +I  +C  ++L  A+ +  K+  +  +P+ +T   
Sbjct: 97  FDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNS 156

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ FC   R+ DA  +  +M+E G + +  T++ LI G F+      A  + + M    
Sbjct: 157 LLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG 216

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G    A+ L   M +  I P  ++ +T+ D
Sbjct: 217 CQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIID 264


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK+  +  A+ L   L  RG  PD++TYNT+I G C  NR+ EA  L +++      PN
Sbjct: 421 LIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPN 480

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T   ++   C+ GR+DDA  +  +M  K    NVV Y+ LIDG  KS  M  A  V +
Sbjct: 481 DVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLD 540

Query: 122 EMCENN------------ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M                +S +  GR  EAM +YD M+  G +PDG    TL +  + +S
Sbjct: 541 AMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNS 600



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL++  ++    + PD+ITY  ++ G C + ++  A  L E++      P+ I +T 
Sbjct: 287 LPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTS 346

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK G +++A  +  +M  +G +  VV YS L+ GY ++ N+  A ++  EM   N
Sbjct: 347 LVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSIN 406

Query: 128 ISP-----NIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           + P     NI        G  ++A+ L   ++  G +PD +  +TL D   +++  +E C
Sbjct: 407 MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC 466



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 47/218 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           L K  +L+ A +L  ++  +G +  PDI+TYNT+I  +   +R+ EA    EK+    + 
Sbjct: 142 LCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGIN 201

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY------------------- 100
           P+ +T  IL+   CK+G +++A  +   M   GP  +V+TY                   
Sbjct: 202 PDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEI 261

Query: 101 ----SC---------LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
               SC         L+DG+ K+  +  A +V EEMC  NI P++             G+
Sbjct: 262 LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQ 321

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
              A  L + ++R G +PD +  ++L D  L  SG  E
Sbjct: 322 VQVAFYLLEEIVRQGYIPDVIAYTSLVD-GLCKSGEIE 358



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A KL  +++ RG    ++ Y++++ GYC    + +A ++  ++  + + P 
Sbjct: 351 LCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPP 410

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I++    K+G +  A  + S ++ +G   +VVTY+ LIDG  K+  ++ A D+ +
Sbjct: 411 LFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLAD 470

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM      PN              GR  +A  L   M R    P+ ++ ++L D   +S 
Sbjct: 471 EMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSD 530

Query: 170 GSQEHCI 176
              + C+
Sbjct: 531 RMDDACM 537



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+K  H     K++  L   G  P+++T+  +I G C   +   A++    L    + P
Sbjct: 36  ILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAP 95

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +   F +LI    K+G  D A  +F  M     K  +VTY+ +I G  KS N++ A ++ 
Sbjct: 96  DVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELL 155

Query: 121 EEMCEN--NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EEM       +P+I            A R  EA    + M   GI PD L  + L
Sbjct: 156 EEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNIL 210



 Score = 37.7 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 41  NRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           +R D A+Q F+        K +  ++  L+D   K G       ++  +L  G   N+VT
Sbjct: 5   SRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVT 64

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSML 147
           +  LI G  K+     A +    + E +++P++             G P +A++L+++M 
Sbjct: 65  FKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENME 124

Query: 148 RNGIMPDGLLLSTLADYNLQSSGSQE 173
            + + P+ +  +T+    L  SG+ E
Sbjct: 125 SSRVKPEIVTYNTVIS-GLCKSGNLE 149


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D A +L   L + G+ P++   N +I   C   R  EA +LF  +    L+PN
Sbjct: 310 LRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPN 369

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILI + CK G MDDA  MF +M EKG +  V  Y+ LI+GY +  N   A  +  
Sbjct: 370 EVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLN 429

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  ++P+ A            G    AM+L+  M RNG+  +    +TL
Sbjct: 430 EMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTL 481



 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 71/121 (58%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++ ++GL P   +Y+ +I G C    L  A++L  ++    +  N  TFT LI 
Sbjct: 424 ARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLIS 483

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK+G MD+A  +F KM++     N VT++ +I+GY +  N++ AF +Y++M +  ++P
Sbjct: 484 GFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTP 543

Query: 131 N 131
           +
Sbjct: 544 D 544



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL +F ++ ++G+   +  YN++I GYC  +   +A  L  ++    L P+
Sbjct: 380 LCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPS 439

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + +++ LI   C++G +  A  +  +M   G   NV T++ LI G+ K  NM  A  +++
Sbjct: 440 AASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFD 499

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M ++++ PN              G   +A QLYD M+  G+ PD     +L
Sbjct: 500 KMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSL 551



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  AL  + ++   G  P+++TY  +I   C    L  A  L E++   +  PNS 
Sbjct: 662 KEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSF 721

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   +D    EG ++ A ++ + +LE G  AN VT++ LI G+ K+  ++ A D+ +  
Sbjct: 722 TYNCFLDFLANEGELEKAKVLHATILE-GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNN 780

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            E+   P+              G   +A QL++ ML  G+ PD
Sbjct: 781 TESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPD 823



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L +A++L  ++   G+  ++ T+ T+I G+C    +DEA +LF+K+    + PN
Sbjct: 450 LCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPN 509

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ++I+ +C+ G +  A  ++ +M+++G   +  TY  LI     +     A +  +
Sbjct: 510 EVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVD 569

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++  N +  N              GR TE   ++D M   G+  D
Sbjct: 570 DLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLD 614



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 102/252 (40%), Gaps = 83/252 (32%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP--- 60
           K+ ++D A +LF ++ D  + P+ +T+N +I GYC +  + +A QL++++    L P   
Sbjct: 487 KDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNY 546

Query: 61  --------------------------------NSITFTILIDAFCKEGRMDDA------- 81
                                           NS + T L+  FCKEGR+ +        
Sbjct: 547 TYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEM 606

Query: 82  ----------------------------TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
                                       +++F +M EKG K + V ++C+ID + K +N+
Sbjct: 607 RARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENI 666

Query: 114 KSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             A + +++M  +  SPN+            +G  + A  L + ML    +P+    +  
Sbjct: 667 VQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCF 726

Query: 162 ADYNLQSSGSQE 173
            D+ L + G  E
Sbjct: 727 LDF-LANEGELE 737



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++   + +RG+  D +TY T++ G+C    L+ A+++ + +  +   P+  + + ++D
Sbjct: 249 AVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVD 308

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K G +D A  +   + E G   N+   + LID   K +  + A  ++  M    + P
Sbjct: 309 GLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEP 368

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPDGL 156
           N     T A+ L  S+ + G+M D L
Sbjct: 369 N---EVTYAI-LIHSLCKRGMMDDAL 390



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 67/132 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK      A  LF ++       D   Y   I  YC +  LD A  L  ++    +K +
Sbjct: 170 LIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGS 229

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ + +L+   C+  R+ +A  + + M+E+G  A+ VTY  L+ G+ +++ ++ A ++ +
Sbjct: 230 AVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTD 289

Query: 122 EMCENNISPNIA 133
           +M   +  P++A
Sbjct: 290 DMLSLHFVPSVA 301



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A  L  ++  +G++   + YN ++ G C  NR+ EAV++   +    +  + +T+ 
Sbjct: 210 NLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYR 269

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  FC+   ++ A  M   ML      +V + S ++DG  K  ++  AF +   + E 
Sbjct: 270 TLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGEL 329

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+              R  EA +L+  M   G+ P+ +  + L
Sbjct: 330 GMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAIL 376



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 9/126 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L+ A  L   + + G   + +T+NT+I G+C   ++  A+ L +  T     P+
Sbjct: 730 LANEGELEKAKVLHATILE-GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPD 788

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD--- 118
            I+++ +I+  CK G ++ A  ++++ML KG K ++V Y+ LI    +  N+   FD   
Sbjct: 789 CISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILI----RWCNIHGEFDKGL 844

Query: 119 -VYEEM 123
            +Y +M
Sbjct: 845 GIYSDM 850



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A+ L    T+ G  PD I+Y+TII   C +  +++A QL+ ++    LKP+ +
Sbjct: 766 KAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIV 825

Query: 64  TFTILIDAFCKEGRMDDATMMFSKML 89
            + ILI      G  D    ++S M+
Sbjct: 826 AYNILIRWCNIHGEFDKGLGIYSDMV 851



 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 23/133 (17%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           T + I+     + +   A  LF+++   +   +   +T  I A+C+   +D A  + ++M
Sbjct: 162 TASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRM 221

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLR 148
             KG K + V Y+ L+ G                +C NN       R  EA+++ +SM+ 
Sbjct: 222 ESKGVKGSAVPYNVLMYG----------------LCRNN-------RVLEAVEVKNSMVE 258

Query: 149 NGIMPDGLLLSTL 161
            GI+ D +   TL
Sbjct: 259 RGIVADEVTYRTL 271


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P +++YNT++ GY  L  L+E  +L   +    ++P+  
Sbjct: 148 KEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A +VY++M
Sbjct: 208 TYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLID 319



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G ++ A  +  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 276 LITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 336 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPD 380



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 72/132 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  L  +++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 286 LCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +  +P++ 
Sbjct: 406 EMQRDGHAPSVV 417



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  + +     + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 111 LVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +++   + S M   G + +V TYS LI+G  K   M  A +++E
Sbjct: 171 VVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFE 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 231 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLI-YGLCKK 289

Query: 170 GS--QEH 174
           G+  Q H
Sbjct: 290 GALNQAH 296



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++    LKP++ 
Sbjct: 323 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 101/182 (55%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD AL    ++   G++P ++ YN +I GYC L R+D A +L  ++   ++KP+ +
Sbjct: 340 KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 399

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ +I  +CK G +D A  +  KML+KG   + +TYS LI G  + + +  A +++E M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + P+              G   +A+ L+D M+R G++PD +  S L +   +S+ +
Sbjct: 460 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSART 519

Query: 172 QE 173
           +E
Sbjct: 520 KE 521



 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A K+F ++   GL PD+++YNT++ GYC +  L E++ +F ++T   L P+
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI A CK G ++ A  + ++M E+G + N VT++ LIDG+ K   +  A    E
Sbjct: 293 VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVE 352

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  I P++             GR   A +L   M    + PD +  ST+
Sbjct: 353 EMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 12/162 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +L  ++  + ++PD++TY+TII GYC +  LD A QL +K+    + P++IT++
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 437

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+E R++DA  +F  ML+ G + +  TY+ LIDG+ K  N++ A  +++EM   
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            + P++            + R  EA +L   +     +PD +
Sbjct: 498 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 539



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A+ L  Q+ +RGL  + +T+  +I G+C    LD+A+   E++    ++P+ +
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI+ +CK GRMD A  +  +M  K  K +VVTYS +I GY K  N+ SAF + ++M
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 424

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + P+       I G     R  +A +L+++ML+ G+ PD    +TL D
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476



 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 13/174 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + + +  L +A +    +   G+ P++ TYN ++   C+  RL+EAV +   +      P
Sbjct: 126 LALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAP 185

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDV 119
           N++T+  L+ AFC+ G +D A  + S M E+G  K N+VT++ +++G  K+  M+ A  V
Sbjct: 186 NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 245

Query: 120 YEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           ++EM    ++P++    T            E++ ++  M + G++PD +  ++L
Sbjct: 246 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 299



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 27/180 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+ A +LF  +   G++PD  TY T+I G+C    +++A+ L +++    + P+
Sbjct: 443 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP---------------KANVVTYSCLIDG 106
            +T+++LI+   K  R  +A  +  K+  + P               KA   +   L+ G
Sbjct: 503 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKG 562

Query: 107 YFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           +     MK A  VY+ M + N   +              G   +A+  +  MLR+G  P+
Sbjct: 563 FCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622



 Score = 43.1 bits (100), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 53/119 (44%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++  + DR  + D   Y+ +I G+C    + +A+   +++      PNS +   L+   
Sbjct: 574 KVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 633

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            +EG + +A      +L   P A+      LID   K  N+ +  DV   M  + + P+
Sbjct: 634 FEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPS 692



 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 50/156 (32%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ AL L  ++  +G+ PD++TY+ +I G     R  EA +L  KL      P++I
Sbjct: 480 KEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 539

Query: 64  --------------------------------------------------TFTILIDAFC 73
                                                              ++ILI   C
Sbjct: 540 KYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC 599

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           + G +  A     +ML  G   N  +   L+ G F+
Sbjct: 600 RGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFE 635


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 150 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 209

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y+ M
Sbjct: 210 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRM 269

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 270 LSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 321



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 218 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPD 277

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 278 LITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRK 337

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 338 RMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPN 382



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++    +  +
Sbjct: 288 LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLD 347

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K N  TY+ +I+ + K  ++     + +
Sbjct: 348 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLK 407

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 408 EMQRDGHVPSVV 419



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       +  + + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 113 LMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 172

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 173 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 232

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 233 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLI-YGLCKK 291

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 292 GDLKQAH 298



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 56/103 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKPN  
Sbjct: 325 KEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXR 384

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 385 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 135 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 194

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 195 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M    + PD +  +TL D
Sbjct: 255 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLID 306



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 203 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  K  K + +TY+ LIDG  K  ++ SAF+  +
Sbjct: 263 LITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRK 322

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ PD
Sbjct: 323 RMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPD 367



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 158 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 217

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 218 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 269



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ + L+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 273 LCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 333 EVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLK 392

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 393 EMQRDGHVPSVV 404



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP+S 
Sbjct: 310 KEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSR 369

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 370 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 99/208 (47%), Gaps = 48/208 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L    KLF Q+ D G+ PD I YN +I GY    R+DEA +L+E++  V L+P+  
Sbjct: 20  KQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIY 79

Query: 64  TFTILIDAFCKEGRMDDA------------------------------------TMMFSK 87
           T+  L++AFCKE +M +A                                     M+F K
Sbjct: 80  TYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHK 139

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-NIA-----------GR 135
           M+E+G  AN V Y+ LI+G  K +N++ A+ + EEM      P NI            G+
Sbjct: 140 MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGK 199

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +EA Q +DSM   G  PD +  + L D
Sbjct: 200 VSEAKQFFDSMPSRGYSPDVVAYNGLLD 227



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   D A+KLF  +  +G  PD +TYN+I+ G    + +DEA ++F+K+      PN
Sbjct: 229 LYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPN 288

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I++   C+  ++DDA  +  +M + G   +VVTY+ L+DG  K+  +  A +++ 
Sbjct: 289 GATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 348

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +N  +P+I              +  +A  L+D M+   ++PD +  + L D
Sbjct: 349 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMD 402



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++ ++D A ++F ++   G  P+  TY+ ++ G+C   ++D+A ++ E+++ +   P+
Sbjct: 264 LARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPD 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ IL+D  CK   +D A  +FS M++ G   ++V+YS +++G  K+  +  A  +++
Sbjct: 324 VVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFD 383

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M E  + P++            AG+  EA  L D M  +G  PD +  +TL
Sbjct: 384 RMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTL 435



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +++ A KL  ++  +G  PD ITYNTI+ G C + ++ EA Q F+ +      P+
Sbjct: 159 LCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPD 218

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L+DA  KEG+ D+A  +F  ++ KG   + VTY+ ++ G  +  NM  A ++++
Sbjct: 219 VVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 278

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  +  +PN             A +  +A ++ + M + G +PD +  + L D
Sbjct: 279 KMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLD 332



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 87/159 (54%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+  +++  G  PD++TYN ++ G C  N +D+A +LF  +      P+ +++++
Sbjct: 305 VDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSV 364

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  CK  ++ DA ++F +M+E+    +VVT++ L+DG  K+  +  A D+ ++M  + 
Sbjct: 365 VLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSG 424

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +P+              GR  +A +L  +M   G + D
Sbjct: 425 CAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 77/143 (53%), Gaps = 13/143 (9%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R   P+  T+  ++  +C   +L +  +LFE++    + P+ I + ILID + K+GR+D+
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------- 133
           A  ++ +M+  G + ++ TY+ L++ + K   MK A ++++ M E    P++        
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 134 -----GRPTEAMQ-LYDSMLRNG 150
                G+ TEA++ L+  M+  G
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERG 144



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +LF  + D G  PDI++Y+ ++ G C  N++ +A  LF+++   +L P+ +TF I
Sbjct: 340 VDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNI 399

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK G++D+A  +  +M   G   + V Y+ L++G  K      A  + + M E  
Sbjct: 400 LMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459

Query: 128 ISPNIAGRPTEA 139
              +    P  A
Sbjct: 460 FLSDCFKAPLRA 471



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 21/174 (12%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ +RG   + + YN +I G C    ++ A +L E++      P++IT+  ++   C
Sbjct: 136 LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLC 195

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           + G++ +A   F  M  +G   +VV Y+ L+D  +K      A  +++++      P+  
Sbjct: 196 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 134 ---------GRPT---EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
                     R +   EA +++  M+ +G  P+G      A Y++  SG   HC
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNG------ATYSIVLSG---HC 300


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+L   +  +G+  D+ TYN +  G C L+R DEA  +   +    +KPN +TFT+
Sbjct: 408 MDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTM 467

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I+ +CKEG + +A  +F  M +KG   N++TY+ LID Y K + +K A  +  EM    
Sbjct: 468 FIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKG 527

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGI 151
           + P+            I GR  EA++L++ M   GI
Sbjct: 528 LLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGI 563



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  +   + ++G++P+++T+   I  YC    L EA +LF  +      PN IT+  L
Sbjct: 444 DEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTL 503

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           IDA+CK+ ++  A  + S+M+ KG   ++ TYS LI G      +  A  ++ EM    I
Sbjct: 504 IDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGI 563

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + N+A            GR  EA +LYD M++ G++PD  + ++L 
Sbjct: 564 TRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++AA  L  ++  +G++ +++ +NT + GYC   ++DEA++L   +    +  +  
Sbjct: 369 KAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVF 428

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL +  CK  R D+A  + + M+EKG K NVVT++  I+ Y K  N+  A  ++ +M
Sbjct: 429 TYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDM 488

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            +    PNI    T            +A ++   M+  G++PD    S+L
Sbjct: 489 EKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSL 538



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A  LF +++ R + P+  TY  +I G C   +++ A  L  ++    +  N + F 
Sbjct: 337 NMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFN 396

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             +D +C+ G+MD+A  + + M +KG  A+V TY+ L +G  K      A  +   M E 
Sbjct: 397 TTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEK 456

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQSSGSQE 173
            + PN+             G   EA +L+  M + G +P+ +  +TL D Y  +    Q 
Sbjct: 457 GVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQA 516

Query: 174 HCI 176
           H I
Sbjct: 517 HKI 519



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K+F ++ ++ +E D+  Y+++I     L  +  A  LF++++   + PN+ T+  
Sbjct: 303 IEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGA 362

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK G+M+ A ++  +M  KG   N+V ++  +DGY +   M  A  +   M +  
Sbjct: 363 LIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKG 422

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           I+ ++              R  EA  + +SM+  G+ P+
Sbjct: 423 INADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPN 461



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 76/135 (56%), Gaps = 7/135 (5%)

Query: 1   MLIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNR---LDEAVQLFEKLTCV 56
           +L +   ++ A +L  ++  +G+ +P++ TYNT++  Y        +DE ++L EK    
Sbjct: 225 VLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEK---E 281

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           Q+  +  T++ILI  +   G +++A  +F +M EK  + +V  YS +I    +  NMK A
Sbjct: 282 QVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRA 341

Query: 117 FDVYEEMCENNISPN 131
           F +++EM + +I PN
Sbjct: 342 FALFDEMSQRDIVPN 356



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 63/106 (59%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A K+  ++ ++GL PD+ TY+++I G C + R+DEA++LF ++    +  N  
Sbjct: 509 KKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVA 568

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           T+T +I    KEGR D+A  ++ +M++ G   +   ++ L+  + K
Sbjct: 569 TYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHK 614



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 19/172 (11%)

Query: 1   MLIKEC-HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           + +K C  +D  ++ F ++ +    E  + +   +I   C    +++A +L +++    +
Sbjct: 188 LALKRCGEVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGI 247

Query: 59  -KPNSITFTILIDAFCKEGRMDDATM-MFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKS 115
            KPN  T+  L++A+   GR D   +    K++EK     +V TYS LI  Y  S +++ 
Sbjct: 248 VKPNVFTYNTLLNAYV--GRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEE 305

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDG 155
           A  ++EEM E NI  ++             G    A  L+D M +  I+P+ 
Sbjct: 306 AEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNA 357



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           + TY+ +I  Y S   ++EA ++FE++    ++ +   ++ +I    + G M  A  +F 
Sbjct: 287 VATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFD 346

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M ++    N  TY  LI G  K+  M++A  +  EM    +  N+             G
Sbjct: 347 EMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRG 406

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  EA++L   M + GI  D    + LA+
Sbjct: 407 KMDEALRLQAIMEKKGINADVFTYNILAN 435


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 101/182 (55%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD AL    ++   G++P ++ YN +I GYC L R+D A +L  ++   ++KP+ +
Sbjct: 198 KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 257

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ +I  +CK G +D A  +  KML+KG   + +TYS LI G  + + +  A +++E M
Sbjct: 258 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 317

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + P+              G   +A+ L+D M+R G++PD +  S L +   +S+ +
Sbjct: 318 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSART 377

Query: 172 QE 173
           +E
Sbjct: 378 KE 379



 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A K+F ++   GL PD+++YNT++ GYC +  L E++ +F ++T   L P+
Sbjct: 91  LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 150

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI A CK G ++ A  + ++M E+G + N VT++ LIDG+ K   +  A    E
Sbjct: 151 VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVE 210

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  I P++             GR   A +L   M    + PD +  ST+
Sbjct: 211 EMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 262



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 12/162 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +L  ++  + ++PD++TY+TII GYC +  LD A QL +K+    + P++IT++
Sbjct: 236 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 295

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+E R++DA  +F  ML+ G + +  TY+ LIDG+ K  N++ A  +++EM   
Sbjct: 296 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 355

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            + P++            + R  EA +L   +     +PD +
Sbjct: 356 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 397



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A+ L  Q+ +RGL  + +T+  +I G+C    LD+A+   E++    ++P+ +
Sbjct: 163 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 222

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI+ +CK GRMD A  +  +M  K  K +VVTYS +I GY K  N+ SAF + ++M
Sbjct: 223 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 282

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + P+       I G     R  +A +L+++ML+ G+ PD    +TL D
Sbjct: 283 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 334



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 86/157 (54%), Gaps = 13/157 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +   G+ P++ TYN ++   C+  RL+EAV +   +      PN++T+  L+ AFC+ G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 78  MDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP 136
           +D A  + S M E+G  K N+VT++ +++G  K+  M+ A  V++EM    ++P++    
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 137 T------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           T            E++ ++  M + G++PD +  ++L
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 157



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITF 65
            L+ A+ + G +   G  P+ +TYNT++  +C    LD A ++   +      KPN +TF
Sbjct: 25  RLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTF 84

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +++  CK GRM+ A  +F +M+ +G   +VV+Y+ L+ GY K   +  +  V+ EM +
Sbjct: 85  NSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ 144

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + P++            AG   +A+ L   M   G+  + +  + L D
Sbjct: 145 RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 194



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 27/180 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+ A +LF  +   G++PD  TY T+I G+C    +++A+ L +++    + P+
Sbjct: 301 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 360

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP---------------KANVVTYSCLIDG 106
            +T+++LI+   K  R  +A  +  K+  + P               KA   +   L+ G
Sbjct: 361 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKG 420

Query: 107 YFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           +     MK A  VY+ M + N   +              G   +A+  +  MLR+G  P+
Sbjct: 421 FCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 480



 Score = 42.7 bits (99), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 53/119 (44%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++  + DR  + D   Y+ +I G+C    + +A+   +++      PNS +   L+   
Sbjct: 432 KVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 491

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            +EG + +A      +L   P A+      LID   K  N+ +  DV   M  + + P+
Sbjct: 492 FEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPS 550



 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 50/156 (32%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ AL L  ++  +G+ PD++TY+ +I G     R  EA +L  KL      P++I
Sbjct: 338 KEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 397

Query: 64  --------------------------------------------------TFTILIDAFC 73
                                                              ++ILI   C
Sbjct: 398 KYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC 457

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           + G +  A     +ML  G   N  +   L+ G F+
Sbjct: 458 RGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFE 493


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 101/182 (55%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD AL    ++   G++P ++ YN +I GYC L R+D A +L  ++   ++KP+ +
Sbjct: 340 KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 399

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ +I  +CK G +D A  +  KML+KG   + +TYS LI G  + + +  A +++E M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + P+              G   +A+ L+D M+R G++PD +  S L +   +S+ +
Sbjct: 460 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSART 519

Query: 172 QE 173
           +E
Sbjct: 520 KE 521



 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A K+F ++   GL PD+++YNT++ GYC +  L E++ +F ++T   L P+
Sbjct: 233 LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI A CK G ++ A  + ++M E+G + N VT++ LIDG+ K   +  A    E
Sbjct: 293 VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVE 352

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  I P++             GR   A +L   M    + PD +  ST+
Sbjct: 353 EMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 91/161 (56%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++  + ++PD++TY+TII GYC +  LD A QL +K+    + P++IT++ 
Sbjct: 379 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+E R++DA  +F  ML+ G + +  TY+ LIDG+ K  N++ A  +++EM    
Sbjct: 439 LIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           + P++            + R  EA +L   +     +PD +
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 539



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A+ L  Q+ +RGL  + +T+  +I G+C    LD+A+   E++    ++P+ +
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI+ +CK GRMD A  +  +M  K  K +VVTYS +I GY K  N+ SAF + ++M
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 424

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + P+       I G     R  +A +L+++ML+ G+ PD    +TL D
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 13/174 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + + +  L +A +    +   G+ P++ TYN ++   C+  RL+EAV +   +      P
Sbjct: 126 LALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAP 185

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDV 119
           N++T+  L+ AFC+ G +D A  + S M E+G  K N+VT++ +++G  K+  M+ A  V
Sbjct: 186 NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 245

Query: 120 YEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           ++EM    ++P++    T            E++ ++  M + G++PD +  ++L
Sbjct: 246 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 299



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 76/123 (61%), Gaps = 4/123 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +LD+A +L  ++  +G+ PD ITY+++I G C   RL++A +LFE +  + ++P+  
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----FDV 119
           T+T LID  CKEG ++ A  +  +M+ KG   +VVTYS LI+G  KS   K A    F +
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529

Query: 120 YEE 122
           Y E
Sbjct: 530 YHE 532



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 27/180 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+ A +LF  +   G++PD  TY T+I G+C    +++A+ L +++    + P+
Sbjct: 443 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP---------------KANVVTYSCLIDG 106
            +T+++LI+   K  R  +A  +  K+  + P               KA   +   L+ G
Sbjct: 503 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKG 562

Query: 107 YFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           +     MK A  VY+ M + N   +              G   +A+  +  MLR+G  P+
Sbjct: 563 FCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622



 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++  + DR  + D   Y+ +I G+C    + +A+   +++      PNS +   L+   
Sbjct: 574 KVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGL 633

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE---EMCENNIS 129
            +EG + +A      +L   P A+      LID      N K   D ++   E+  +  S
Sbjct: 634 FEEGMVVEADNAIQDLLTCCPLADAEASKALID-----LNRKEGMDYFQAQGEIWYSESS 688

Query: 130 PNI 132
           P++
Sbjct: 689 PSV 691



 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 50/156 (32%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ AL L  ++  +G+ PD++TY+ +I G     R  EA +L  KL      P++I
Sbjct: 480 KEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 539

Query: 64  --------------------------------------------------TFTILIDAFC 73
                                                              ++ILI   C
Sbjct: 540 KYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC 599

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           + G +  A     +ML  G   N  +   L+ G F+
Sbjct: 600 RGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFE 635


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 94/167 (56%), Gaps = 12/167 (7%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             L+ A KLF  L DRG++ ++ +YN +I GYC   ++DEA + FE++    LKP+++T+ 
Sbjct: 1240 QLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYN 1299

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             LI A C+ GR+  A  +F +M   G    + TY  L+DG  K+ +++ A D+++ + + 
Sbjct: 1300 TLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKT 1359

Query: 127  NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               PNI            AG+  EA + +D + +NG+ PD +  + L
Sbjct: 1360 EHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNIL 1406



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 12/141 (8%)

Query: 18   LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
            + DRG  PD  T+  +I G C   ++ EA Q+ E +     +P+ +T+  L++  C  G+
Sbjct: 1181 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQ 1240

Query: 78   MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
            ++DAT +F  + ++G K NV +Y+ LI+GY K Q +  AF  +EEM    + P+      
Sbjct: 1241 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNT 1300

Query: 133  -------AGRPTEAMQLYDSM 146
                   +GR   A +L+  M
Sbjct: 1301 LIGALCQSGRVRTAQKLFVEM 1321



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 11   ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            A++LF ++T +GL  D  TY  +I G C   +   A++L EK+     K +  T+ ++ID
Sbjct: 1035 AVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKG-NCKGDVFTYGMIID 1093

Query: 71   AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            A CK+G   +A  MFS+M+  G   +VV YS L+DG  +   +K A + ++EM    IS 
Sbjct: 1094 ALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISA 1153

Query: 131  NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++            AG   E     + M+  G  PD    + L D
Sbjct: 1154 DVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILID 1198



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 73/132 (55%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K  HL+ A+ LF  +     +P+I  ++ ++ G C   +L+EA + F++++   L+P+
Sbjct: 1340 LCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPD 1399

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +I + ILI+  C +G + +A  +  +M EKG   + +T++ +I    K   +  A  + E
Sbjct: 1400 TIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLE 1459

Query: 122  EMCENNISPNIA 133
            EM   N SP+ A
Sbjct: 1460 EMRNRNFSPDEA 1471



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 47/205 (22%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTII---------------------CG------ 36
            K+  +D A + F ++  +GL+P  +TYNT+I                     CG      
Sbjct: 1272 KDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLS 1331

Query: 37   -YCSL-------NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
             YC L         L+EA+ LF+ +   + KPN   F+IL+D  C+ G++++A   F ++
Sbjct: 1332 TYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 1391

Query: 89   LEKGPKANVVTYSCLIDGY----FKSQNMKSAFDVYEEMC-ENNISPNI-------AGRP 136
             + G + + + Y+ LI+G       S+ +K  + + E+ C  ++I+ N+           
Sbjct: 1392 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 1451

Query: 137  TEAMQLYDSMLRNGIMPDGLLLSTL 161
             EA+QL + M      PD  + S L
Sbjct: 1452 HEAIQLLEEMRNRNFSPDEAVTSML 1476



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 11/161 (6%)

Query: 14   LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            ++ ++ D G++PD+ T N +I   CSL  +     +F        +P+++T T L+    
Sbjct: 968  MYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVW 1027

Query: 74   KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM---CENNI-- 128
             E  + DA  +F +M +KG   +  TY  LI+G  K++    A  ++E+M   C+ ++  
Sbjct: 1028 MENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFT 1087

Query: 129  ------SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  +    G  TEA+ ++  M+  GI+PD ++ S+L D
Sbjct: 1088 YGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMD 1128



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 26   DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
            D+ TY  II   C      EA+ +F ++    + P+ + ++ L+D  C+ GR+ +A   F
Sbjct: 1084 DVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 1143

Query: 86   SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
             +M  +G  A+V TY+ LI G  ++   K        M +   SP+              
Sbjct: 1144 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 1203

Query: 134  GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            G+  EA Q+ + M   G  PD L  +TL
Sbjct: 1204 GKVGEAQQILELMRHKGKEPDILTYNTL 1231



 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%)

Query: 8    LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            L  A+KL  Q+ ++G  PD IT+N II      N + EA+QL E++      P+    ++
Sbjct: 1416 LSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSM 1475

Query: 68   LIDAFCKEGRMDDATMMFSKMLEKG 92
            L+     + +   A +     L+KG
Sbjct: 1476 LLCLASFDPQWHAALVSLPNALQKG 1500


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++P I+TY+++I G+C  +RLDEA Q+FE +      P+
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R+++   +F +M ++G   N VTY+ LI G F++ +   A ++++
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 455

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM  + + PNI             G+  +AM +++ + R+ + P      T+  YN+   
Sbjct: 456 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYNIMIE 509

Query: 170 G 170
           G
Sbjct: 510 G 510



 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  L  ++    LEP ++ YNTII G C    +D+A+ LF+++    ++PN
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI   C  GR  DA+ + S M+E+    +V T+S LID + K   +  A  +Y+
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 350

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I P+I              R  EA Q+++ M+     PD +  +TL
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402



 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  +G +PD++TY  ++ G C     D A  L  K+   +L+P  + +  +ID
Sbjct: 205 AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 264

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   MDDA  +F +M  KG + NVVTYS LI           A  +  +M E  I+P
Sbjct: 265 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G+  EA +LYD M++  I P  +  S+L
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++  +G+ P+++TY+++I   C+  R  +A +L   +   ++ P+
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
             TF+ LIDAF KEG                                   R+D+A  MF 
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AG 134
            M+ K    +VVTY+ LI G+ K + ++   +V+ EM +     N ++ NI       AG
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A +++  M+ +G+ P+ +  +TL D
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 76/123 (61%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A ++F ++   G+ P+I+TYNT++ G C   +L++A+ +FE L   +++P   T+ I+
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG K +VV Y+ +I G+ +  + + A  +++EM E+  
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 567

Query: 129 SPN 131
            PN
Sbjct: 568 LPN 570



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  AL + G++   G EP+I+T ++++ GYC   R+ EAV L +++     +PN++
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI       +  +A  +  +M+ KG + ++VTY  +++G  K  +   AF++  +M
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQ 167
            +  + P +    T            +A+ L+  M   GI P+ +    L+S L +Y   
Sbjct: 248 EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307

Query: 168 SSGSQ 172
           S  S+
Sbjct: 308 SDASR 312



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  LD A+ LFG++      P II ++ ++     +N+ D  + L E++  + +  N 
Sbjct: 57  LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++ILI+ FC+  ++  A  +  KM++ G + N+VT S L++GY  S+ +  A  + ++
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M      PN            +  + +EAM L D M+  G  PD
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD 220



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++  +++F +++ RGL  + +TYN +I G       D A ++F+++    + PN +T+ 
Sbjct: 411 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 470

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D  CK G+++ A ++F  +     +  + TY+ +I+G  K+  ++  +D++  +   
Sbjct: 471 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 530

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            + P++             G   EA  L+  M  +G +P+    +TL    L+
Sbjct: 531 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 65/122 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A+ +F  L    +EP I TYN +I G C   ++++   LF  L+   +KP+
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I  FC++G  ++A  +F +M E G   N   Y+ LI    +  + +++ ++ +
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595

Query: 122 EM 123
           EM
Sbjct: 596 EM 597



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  Q+ + G+  +  TY+ +I  +C  ++L  A+ +  K+  +  +PN +T + 
Sbjct: 97  FDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ +C   R+ +A  +  +M   G + N VT++ LI G F       A  + + M    
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G    A  L + M +  + P  L+ +T+ D
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 264



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++    LF  L+ +G++PD++ YNT+I G+C     +EA  LF+++      PNS 
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
            +  LI A  ++G  + +  +  +M   G   +  T
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 608


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             +KE  L  A KL+ ++  R ++P I+TY+++I G+C  +RLDEA Q+FE +      P+
Sbjct: 950  FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 1009

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +T+  LI  FCK  R+++   +F +M ++G   N VTY+ LI G F++ +   A ++++
Sbjct: 1010 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 1069

Query: 122  EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            EM  + + PNI             G+  +AM +++ + R+ + P      T+  YN+   
Sbjct: 1070 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYNIMIE 1123

Query: 170  G 170
            G
Sbjct: 1124 G 1124



 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL + G++   G EPD +T  +++ G+C  NR+ +AV L +K+  +  KP+ + +  +ID
Sbjct: 242 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 301

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK  R++DA   F ++  KG + NVVTY+ L++G   S     A  +  +M +  I+P
Sbjct: 302 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 361

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G+  EA +L++ M+R  I PD +  S+L
Sbjct: 362 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 404



 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K    D A  L  ++    LEP ++ YNTII G C    +D+A+ LF+++    ++PN
Sbjct: 845  LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +T++ LI   C  GR  DA+ + S M+E+    +V T+S LID + K   +  A  +Y+
Sbjct: 905  VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 964

Query: 122  EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EM + +I P+I              R  EA Q+++ M+     PD +  +TL
Sbjct: 965  EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ + G +PDI+ YN II   C   R+++A   F+++    ++PN +T+T L++
Sbjct: 277 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 336

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R  DA  + S M++K    NV+TYS L+D + K+  +  A +++EEM   +I P
Sbjct: 337 GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 396

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I              R  EA Q++D M+  G + D +  +TL
Sbjct: 397 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 439



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  +G +PD++TY  ++ G C     D A  L  K+   +L+P  + +  +ID
Sbjct: 819 AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 878

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   MDDA  +F +M  KG + NVVTYS LI           A  +  +M E  I+P
Sbjct: 879 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 938

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G+  EA +LYD M++  I P  +  S+L
Sbjct: 939 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 981



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 47/209 (22%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K  H+D AL LF ++  +G+ P+++TY+++I   C+  R  +A +L   +   ++ P+
Sbjct: 880  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 939

Query: 62   SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
              TF+ LIDAF KEG                                   R+D+A  MF 
Sbjct: 940  VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 999

Query: 87   KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AG 134
             M+ K    +VVTY+ LI G+ K + ++   +V+ EM +     N ++ NI       AG
Sbjct: 1000 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 1059

Query: 135  RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                A +++  M+ +G+ P+ +  +TL D
Sbjct: 1060 DCDMAQEIFKEMVSDGVPPNIMTYNTLLD 1088



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 80/131 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   +  A +LF ++    ++PDI+TY+++I G C  +R+DEA Q+F+ +       +
Sbjct: 373 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 432

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LI+ FCK  R++D   +F +M ++G  +N VTY+ LI G+F++ ++  A + + 
Sbjct: 433 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 492

Query: 122 EMCENNISPNI 132
           +M    ISP+I
Sbjct: 493 QMDFFGISPDI 503



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 76/123 (61%)

Query: 9    DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
            D A ++F ++   G+ P+I+TYNT++ G C   +L++A+ +FE L   +++P   T+ I+
Sbjct: 1062 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 1121

Query: 69   IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
            I+  CK G+++D   +F  +  KG K +VV Y+ +I G+ +  + + A  +++EM E+  
Sbjct: 1122 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 1181

Query: 129  SPN 131
             PN
Sbjct: 1182 LPN 1184



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  AL + G++   G EP+I+T ++++ GYC   R+ EAV L +++     +PN++
Sbjct: 742 RRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 801

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI       +  +A  +  +M+ KG + ++VTY  +++G  K  +   AF++  +M
Sbjct: 802 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 861

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQ 167
            +  + P +    T            +A+ L+  M   GI P+ +    L+S L +Y   
Sbjct: 862 EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 921

Query: 168 SSGSQ 172
           S  S+
Sbjct: 922 SDASR 926



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K    D  + L  ++   G+  D+ T+N +I  +C   ++  A+ +  K+  +  +P+
Sbjct: 198 IVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPD 257

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T   L++ FC+  R+ DA  +  KM+E G K ++V Y+ +ID   K++ +  AFD ++
Sbjct: 258 RVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFK 317

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+    I PN+            + R ++A +L   M++  I P+ +  S L D
Sbjct: 318 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLD 371



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  + + P++ITY+ ++  +    ++ EA +LFE++  + + P+ +T++ LI+
Sbjct: 347 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 406

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R+D+A  MF  M+ KG  A+VV+Y+ LI+G+ K++ ++    ++ EM +  +  
Sbjct: 407 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS 466

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
           N             AG   +A + +  M   GI PD     +LL  L D
Sbjct: 467 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 515



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  LD A+ LFG++      P II ++ ++     +N+ D  + L E++  + +  N 
Sbjct: 671 LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 730

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++ILI+ FC+  ++  A  +  KM++ G + N+VT S L++GY  S+ +  A  + ++
Sbjct: 731 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 790

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M      PN            +  + +EAM L D M+  G  PD
Sbjct: 791 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD 834



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A   F ++  +G+ P+++TY  ++ G C+ +R  +A +L   +   ++ PN
Sbjct: 303 LCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPN 362

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+DAF K G++ +A  +F +M+      ++VTYS LI+G      +  A  +++
Sbjct: 363 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 422

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M       ++            A R  + M+L+  M + G++ + +  +TL
Sbjct: 423 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 474



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A ++F  +  +G   D+++YNT+I G+C   R+++ ++LF +++   L  N++T+ 
Sbjct: 413 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 472

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F + G +D A   FS+M   G   ++ TY+ L+ G   +  ++ A  ++E+M + 
Sbjct: 473 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 532

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +I             G+  EA  L+ S+   G+ PD +  +T+
Sbjct: 533 EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 579



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  +KLF +++ RGL  + +TYNT+I G+     +D+A + F ++    + P+  
Sbjct: 445 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 504

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+   C  G ++ A ++F  M ++    ++VTY+ +I G  K+  ++ A+ ++  +
Sbjct: 505 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 564

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLS 159
               + P+I    T            E   LY  M + G+M +   LS
Sbjct: 565 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 612



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             ++  +++F +++ RGL  + +TYN +I G       D A ++F+++    + PN +T+ 
Sbjct: 1025 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 1084

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             L+D  CK G+++ A ++F  +     +  + TY+ +I+G  K+  ++  +D++  +   
Sbjct: 1085 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 1144

Query: 127  NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             + P++             G   EA  L+  M  +G +P+    +TL    L+
Sbjct: 1145 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 1197



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L+ A+ +F  L    +EP I TYN +I G C   ++++   LF  L+   +KP+
Sbjct: 1090 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 1149

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             + +  +I  FC++G  ++A  +F +M E G   N   Y+ LI    +  + +++ ++ +
Sbjct: 1150 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 1209

Query: 122  EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
            EM     S   AG  +  + L  +ML +G +    L
Sbjct: 1210 EM----RSCGFAGDAS-TIGLVTNMLHDGRLDKSFL 1240



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  Q+ + G+  +  TY+ +I  +C  ++L  A+ +  K+  +  +PN +T + 
Sbjct: 711 FDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 770

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ +C   R+ +A  +  +M   G + N VT++ LI G F       A  + + M    
Sbjct: 771 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 830

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G    A  L + M +  + P  L+ +T+ D
Sbjct: 831 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIID 878



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 26/174 (14%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A  LF  L+ +GL+PDI+TY T++ G C+   L E   L+ K+    L  N  
Sbjct: 550 KTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDC 609

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLE--------KGPKANVVTYSCLIDGYFKSQNMKS 115
           T +        +G +  +  +  KML         K  K+ V   +  +    ++ + K+
Sbjct: 610 TLS--------DGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSL---LRAFSGKT 658

Query: 116 AFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL----LLSTLADYN 165
           ++D  E++  N +S     +  +A+ L+  M+++   P  +    LLS +A  N
Sbjct: 659 SYDYREKLSRNGLSEL---KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMN 709


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 136 KERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY 195

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 196 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQM 255

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  + L D
Sbjct: 256 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALID 307



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 204 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPD 263

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 264 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRK 323

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDG 155
            M + NI   ++A           GR  +A ++   ML  G+ PD 
Sbjct: 324 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDA 369



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 99  LMKLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPS 158

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 159 VVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 218

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   A+++Y  ML   ++PD +  +TL  Y L   
Sbjct: 219 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLI-YGLCKK 277

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 278 GDLKQAH 284



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY  +I G C    LD A +  +++    ++ +
Sbjct: 274 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLD 333

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 334 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 393

Query: 122 E 122
           E
Sbjct: 394 E 394


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 100/174 (57%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A  L+ ++  RG+ P++ITY+T+I G+C   +L EA  L  ++    + PN
Sbjct: 160 LCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPN 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TIL+DA CKEG++ +A  + + M ++G K NVV+Y+ L+DGY     +++A  ++ 
Sbjct: 220 VYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFH 279

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +  ++PN+            + R  EAM L   +L   ++P+ +  S+L D
Sbjct: 280 TMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLID 333



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +  +G+ P++ +YN +I   C   R+DEA+ L  ++    + PN++T++ LID
Sbjct: 274 AKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLID 333

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK GR+  A  +  +M  +G  A+VVTY+ L+D   K+QN+  A  ++ +M E  I P
Sbjct: 334 GFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQP 393

Query: 131 N------------IAGRPTEAMQLYDSMLRNG 150
           N              GR   A +L+  +L  G
Sbjct: 394 NKYTYTALIDGLCKGGRHKNAQKLFQHLLVKG 425



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  L   +T  G++P++++YNT++ GYC +  +  A Q+F  +    + PN
Sbjct: 230 LCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPN 289

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ I+ID  CK  R+D+A  +  ++L K    N VTYS LIDG+ K   + SA D+ +
Sbjct: 290 VYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLK 349

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM       ++    +            +A  L+  M   GI P+    + L D
Sbjct: 350 EMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALID 403



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++  + + P+ +TY+++I G+C L R+  A+ L +++       +
Sbjct: 300 LCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPAD 359

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L+DA CK   +D AT +F KM E+G + N  TY+ LIDG  K    K+A  +++
Sbjct: 360 VVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQ 419

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            +       N+             G   EA+ +   M  NG +PD +
Sbjct: 420 HLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAV 466



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  +L    ++  +G + D ++Y T++ G C +     A++L   +     +PN + +  
Sbjct: 96  VKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNT 155

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK+  +++A  ++S+M  +G   NV+TYS LI G+  +  +  AF +  EM   N
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN 215

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+PN+             G+  EA  L   M + G+ P+ +  +TL D
Sbjct: 216 INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMD 263



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   A+ LF Q+  +G+EPD+ T N +I  +C L ++  +  +  K+  +  +PN
Sbjct: 20  LVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPN 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT   L+   C +G +  +     K++ +G + + V+Y+ L++G  K    +SA  +  
Sbjct: 80  TITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLR 139

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            + + +  PN+    T            EA  LY  M   GI P+ +  STL
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTL 191



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A  LF ++ +RG++P+  TY  +I G C   R   A +LF+ L     + N
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRIN 429

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ++I   CKEG +D+A  M SKM E G   + VT+  +I   F+      A  +  
Sbjct: 430 VWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLH 489

Query: 122 EMCENNI----------SPNIAGRPTEAMQLYDSMLRNGIM 152
           EM   ++          SPN      +A +L   M+  G++
Sbjct: 490 EMIAKDLLRFRDFHGERSPN---ENDKAEKLLHEMIAKGLL 527


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  A K+F ++T R L+P ++++NT+I GYC +  LDE  +L  ++   + +P+  
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVF 311

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI+A CKE +MD A  +F +M ++G   N V ++ LI G+ ++  +    + Y++M
Sbjct: 312 TYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM 371

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P+I             G    A  + D M+R G+ PD +  +TL D
Sbjct: 372 LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLID 423



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++  RGL P+ + + T+I G+     +D   + ++K+    L+P+
Sbjct: 320 LCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPD 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L++ FCK G +  A  +   M+ +G + + +TY+ LIDG+ +  ++++A ++ +
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRK 439

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +N I  +              GR  +A +    MLR GI PD +  + + D
Sbjct: 440 EMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMD 493



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 12/185 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L AA  +   +  RGL PD ITY T+I G+C    ++ A+++ +++    ++ + +
Sbjct: 392 KNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRV 451

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F+ L+   CKEGR+ DA     +ML  G K + VTY+ ++D + K  + ++ F + +EM
Sbjct: 452 GFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEM 511

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             +   P++             G+   A  L D+ML  G++PD +  +TL + + + + S
Sbjct: 512 QSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANS 571

Query: 172 QEHCI 176
            +  I
Sbjct: 572 SKRYI 576



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            + ++ D G   ++  +N ++  +C    + +A ++F+++T   L+P  ++F  LI+ +C
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYC 286

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
           K G +D+   +  +M +   + +V TYS LI+   K   M  A  +++EMC+  + PN  
Sbjct: 287 KVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDV 346

Query: 132 -----IAGRPTEA-----MQLYDSMLRNGIMPDGLLLSTLAD 163
                I G           + Y  ML  G+ PD +L +TL +
Sbjct: 347 IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVN 388


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD+A  +F +ML++G   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                SP+              G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLID 319



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A KLF ++ DRGL P+ +T+ T+I G+C   +LD A+++++++      P+
Sbjct: 216 LCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 XITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRK 335

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ PD
Sbjct: 336 RMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPD 380



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   LD   +L   +   G++PD+ TY+ +I G C  +++DEA +LF+++    L PN 
Sbjct: 182 IKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK G++D A  ++ +ML +G   + +TY+ LI G  K  ++  A D+ +E
Sbjct: 242 VTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDE 301

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 302 MSMKGLKPD 310



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 27/171 (15%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I EC   A+L  F  L DR               +C    +  A  +F+ +T   L+P+ 
Sbjct: 127 ILECRYPASLYFFNILMDR---------------FCKEGEIRLAQSVFDGITKWGLRPSV 171

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++F  L++ + K G +D+   + S M   G + +V TYS LI+G  K   M  A  +++E
Sbjct: 172 VSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDE 231

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M +  + PN              G+   AM++Y  ML  G  PD +  +TL
Sbjct: 232 MLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTL 282



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 70/129 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++T LI   CKEGR  DA  M  +ML  G K +  TY+ ++  + K+ ++K    + +
Sbjct: 346 DVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLK 405

Query: 122 EMCENNISP 130
           EM  +   P
Sbjct: 406 EMQRDGHVP 414



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D ++Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+TI++  FCK G +   + +  +M   G    V+T
Sbjct: 383 TYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F ++T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +M+DA  +F +M+  G   N VT++ LIDG+ K+ ++  A + Y+EM
Sbjct: 208 TYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A +LFG++   GL P+ +T+ T+I G+C    +D A++ ++++      P+
Sbjct: 216 LCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++A    +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           G+  +A ++   ML  G+ PD
Sbjct: 336 RMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPD 380



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            + ++ + G    +  +N ++  +C    +  A  +F+++T   L+P+ ++F  L++ + 
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYI 182

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
           + G +D+   + S M   G + +V TYS LI+G  K   M  A +++ EM  N + PN  
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGV 242

Query: 132 ----------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G    AM+ Y  MLR G  PD +  +TL
Sbjct: 243 TFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTL 282



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 70/129 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A+   +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EG+  DA  M  +ML  G K +  TY+ +I+ + K  ++K+   + +
Sbjct: 346 DVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLK 405

Query: 122 EMCENNISP 130
           EM  +   P
Sbjct: 406 EMQRDGHVP 414



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ AL    ++    +  D + Y  +I G C   +  +A ++  ++  V LKP++ 
Sbjct: 323 KEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G    VVT
Sbjct: 383 TYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F ++ ++G+   ++TYN +I G C   +  EAV+L  K+  V L PN +T+ I
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC  G+MD A  +F+++   G    +VTY+ LI GY K +N+  A D+ +EM E  
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I+P+                  +A +++  M ++G++PD    S L
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVL 444



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++LF QL   GL P ++TYNT+I GY  +  L  A+ L +++    + P+ +T+TI
Sbjct: 349 MDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTI 408

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDAF +    + A  M S M + G   +V TYS LI G     NMK A  +++ + E +
Sbjct: 409 LIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMH 468

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + PN              G    A++L + M+ +G++P+
Sbjct: 469 LQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPN 507



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++IK C    +     +L   L + GL P+++ Y T+I G C    +  A  LF K+  +
Sbjct: 163 IMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRL 222

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L PN  T+++L++ F K+G   +   M+  M   G   N   Y+CLI  Y     +  A
Sbjct: 223 GLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKA 282

Query: 117 FDVYEEMCENNIS 129
           F V+ EM E  I+
Sbjct: 283 FKVFAEMREKGIA 295



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++   GL P+  TY+ ++ G+       E  Q++E +    + PN+  +  LI 
Sbjct: 212 AKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLIS 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G +D A  +F++M EKG    V+TY+ LI G  + +    A  +  ++ +  +SP
Sbjct: 272 EYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSP 331

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           NI             G+   A++L++ +  +G+ P      TL  YN   +G
Sbjct: 332 NIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP------TLVTYNTLIAG 377



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI+  + D A  +F +L  + +  D  ++  +I G C      +  +L   L    L P
Sbjct: 133 LLIRSNYFDKAWWIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSP 191

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + +T LID  CK G +  A  +F KM   G   N  TYS L++G+FK    +  F +Y
Sbjct: 192 NVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMY 251

Query: 121 EEMCENNISPN 131
           E M  + I PN
Sbjct: 252 ENMKRSGIVPN 262



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 65/125 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A ++   +   GL PD+ TY+ +I G C    + EA +LF+ L  + L+PNS+ +  +
Sbjct: 420 EKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTM 479

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +CKEG    A  + ++M+  G   NV ++   I    + +  K A  +  +M  + +
Sbjct: 480 IHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGL 539

Query: 129 SPNIA 133
            P+++
Sbjct: 540 KPSVS 544



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL     +   G  P   T+N ++C     N  D+A  +F +L   ++  ++ +F I+
Sbjct: 106 DQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKS-KVVLDAYSFGIM 164

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C+ G       + + + E G   NVV Y+ LIDG  K  N+  A +++ +M    +
Sbjct: 165 IKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGL 224

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
            PN              G   E  Q+Y++M R+GI+P+ 
Sbjct: 225 VPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNA 263



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A KLF  L +  L+P+ + YNT+I GYC       A++L  ++    + PN  +F  
Sbjct: 454 MKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCS 513

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
            I   C++ +  +A ++  +M+  G K +V  Y
Sbjct: 514 TIGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++P I+TY+++I G+C  +RLDEA Q+FE +      P+
Sbjct: 131 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 190

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R+++   +F +M ++G   N VTY+ LI G F++ +   A ++++
Sbjct: 191 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 250

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM  + + PNI             G+  +AM +++ + R+ + P      T+  YN+   
Sbjct: 251 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYNIMIE 304

Query: 170 G 170
           G
Sbjct: 305 G 305



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  L  ++    LEP ++ YNTII G C    +D+A+ LF+++    ++PN
Sbjct: 26  LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 85

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI   C  GR  DA+ + S M+E+    +V T+S LID + K   +  A  +Y+
Sbjct: 86  VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 145

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I P+I              R  EA Q+++ M+     PD +  +TL
Sbjct: 146 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 197



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++  +G+ P+++TY+++I   C+  R  +A +L   +   ++ P+
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
             TF+ LIDAF KEG                                   R+D+A  MF 
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 180

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AG 134
            M+ K    +VVTY+ LI G+ K + ++   +V+ EM +     N ++ NI       AG
Sbjct: 181 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 240

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A +++  M+ +G+ P+ +  +TL D
Sbjct: 241 DCDMAQEIFKEMVSDGVPPNIMTYNTLLD 269



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           + L  ++  +G +PD++TY  ++ G C     D A  L  K+   +L+P  + +  +ID 
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            CK   MDDA  +F +M  KG + NVVTYS LI           A  +  +M E  I+P+
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 132 I------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +             G+  EA +LYD M++  I P  +  S+L
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 162



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 76/123 (61%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A ++F ++   G+ P+I+TYNT++ G C   +L++A+ +FE L   +++P   T+ I+
Sbjct: 243 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 302

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG K +VV Y+ +I G+ +  + + A  +++EM E+  
Sbjct: 303 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 362

Query: 129 SPN 131
            PN
Sbjct: 363 LPN 365



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 89/179 (49%), Gaps = 13/179 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++  +++F +++ RGL  + +TYN +I G       D A ++F+++    + PN +T+ 
Sbjct: 206 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 265

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D  CK G+++ A ++F  +     +  + TY+ +I+G  K+  ++  +D++  +   
Sbjct: 266 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 325

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            + P++             G   EA  L+  M  +G +P+    +TL    L+  G +E
Sbjct: 326 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR-DGDRE 383



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A+ +F  L    +EP I TYN +I G C   ++++   LF  L+   +KP+
Sbjct: 271 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 330

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I  FC++G  ++A  +F +M E G   N   Y+ LI    +  + +++ ++ +
Sbjct: 331 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 390

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
           EM     S   AG  +  + L  +ML +G +    L
Sbjct: 391 EM----RSCGFAGDAS-TIGLVTNMLHDGRLDKSFL 421


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 136 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 195

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 196 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 255

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 256 LSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLID 307



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 204 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 263

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G ++ A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 264 LITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRK 323

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GRP +A ++   ML  G+ PD
Sbjct: 324 RMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPD 368



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 99  LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 158

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 159 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 218

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 219 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI-YGLCKK 277

Query: 170 G--SQEH 174
           G  +Q H
Sbjct: 278 GDLNQAH 284



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 70/131 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 274 LCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD 333

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T +I   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 334 DVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLK 393

Query: 122 EMCENNISPNI 132
           EM  N   P++
Sbjct: 394 EMQRNGHVPSV 404



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LDAA +   ++    +  D + Y  II G C   R  +A ++  ++  V LKP++ 
Sbjct: 311 KEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTG 370

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +V TY+ L++G
Sbjct: 371 TYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K+  ++   G  P ++TYN ++ GYC L R+ EAV +   +    L P+ ++++ 
Sbjct: 398 MNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYST 457

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC+E  +  A  M  +M+EKG   + VTYS LI G    Q +  AFD++ EM    
Sbjct: 458 VIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRG 517

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+            + G  ++A++L+D M++ G +PD +  S L
Sbjct: 518 LPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVL 563



 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +L   L L  ++  +GL P+++TY T+I   C    L  AV++F+++    L+PN  
Sbjct: 324 KEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNER 383

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID FC++G M++A  + S+M+  G   +VVTY+ L+ GY     ++ A  +   M
Sbjct: 384 TYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGM 443

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            E  + P++    T            +A Q+ + M+  G++PD +  S+L
Sbjct: 444 VERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSL 493



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A+++F Q+  RGL P+  TY T+I G+C    ++EA ++  ++      P+ +
Sbjct: 359 KAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVV 418

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+  +C  GR+ +A  +   M+E+G   +VV+YS +I G+ + + +  AF + EEM
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM 478

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E  + P+       I G     +  EA  L+  M+R G+ PD +  ++L
Sbjct: 479 VEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSL 528



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +L  ++  +GL PD +TYNT++ G+C    L + + L  ++    L PN +T+T LI+  
Sbjct: 298 ELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCM 357

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           CK G +  A  +F +M  +G + N  TY+ LIDG+ +   M  A+ V  EM  +  SP++
Sbjct: 358 CKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSV 417

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        GR  EA+ +   M+  G+ PD +  ST+
Sbjct: 418 VTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTV 458



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++ +  L+  L    ++   G+ P+++TYNT+I   C   ++ EA+ L   +    +  N
Sbjct: 217 VVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAAN 276

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++  +I+  C +GRM +   +  +M  KG   + VTY+ L++G+ K  N+     +  
Sbjct: 277 LISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLS 336

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    +SPN+            AG  + A++++D M   G+ P+    +TL D
Sbjct: 337 EMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLID 390



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 5/133 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  L  A ++  ++ ++G+ PD +TY+++I G C   +L EA  LF ++    L P+ +
Sbjct: 464 RERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEV 523

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV---- 119
           T+T LI+A+C +G +  A  +  +M+++G   + VTYS LI+G  K    K A  +    
Sbjct: 524 TYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKL 583

Query: 120 -YEEMCENNISPN 131
            YEE   ++++ N
Sbjct: 584 FYEESVPDDVTYN 596



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL+L  ++  RG  PD +TY+ +I G     R   A +L  KL   +  P+ +T+  
Sbjct: 538 LSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNT 597

Query: 68  LID---------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           LI+                FC +G M++A  +F  ML++  K N   Y+ +I G+ +  N
Sbjct: 598 LIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGN 657

Query: 113 MKSAFDVYEEM 123
           +  A+++Y E+
Sbjct: 658 VHKAYNLYMEL 668



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 57/124 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++F  +  R  +P+   YN +I G+     + +A  L+ +L       +++    
Sbjct: 623 MNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIA 682

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ A  +EG  D+ + +   +L      +      L++  FK  NM +  +V  EM ++ 
Sbjct: 683 LVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDG 742

Query: 128 ISPN 131
           + P+
Sbjct: 743 LLPD 746



 Score = 43.1 bits (100), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR-----MDDATM 83
            ++ ++     L  + +A+ L          P  +++  ++DA  +         DDA  
Sbjct: 134 VFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAER 193

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------ 137
           +F  M+  G   NV TY+ +I G     +++       +M +  ISPN+    T      
Sbjct: 194 VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253

Query: 138 ------EAMQLYDSMLRNGI 151
                 EAM L  +M   G+
Sbjct: 254 KKKKVKEAMALLRAMAVGGV 273


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A K+  ++   GL PD++TY  +ICG+C +  ++E+ +L EK+    LK + +T+T+
Sbjct: 356 ISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTV 415

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ + CK GR+D+A ++  +M   G K +++TYS LI G  K   ++ A ++YEEMC   
Sbjct: 416 LLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKR 475

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I PN              G  +EA   +DS+ ++ +  + +L + + D
Sbjct: 476 IYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMID 523



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++   GL+PD++TY+ +I G C    ++EA++L+E++   ++ PN
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPN 479

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S   + +I    ++G + +A M F  + +      ++ Y+ +IDGY K  N+  A   Y+
Sbjct: 480 SFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYK 539

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ E  ISP I             G+  EA++L D++  +G++P  +  +TL +
Sbjct: 540 QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMN 593



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ + Q+ ++G+ P I+T+N++I G+C   +L EAV+L + +    L P S+T+T L++
Sbjct: 534 AVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMN 593

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+EG M     M  +M  K  K   +TY+ ++ G  K   +  +  + + M    + P
Sbjct: 594 GYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFP 653

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +     T            +A QL++ ML++ + P  +  + L +
Sbjct: 654 DQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLIN 698



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 86/165 (52%), Gaps = 5/165 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A+KL   +   GL P  +TY T++ GYC    +     +  ++    +KP  I
Sbjct: 562 KKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQI 621

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T+++   CKEGR+ ++  +   M  +G   + +TY+ +I  + K+ +++ AF ++ +M
Sbjct: 622 TYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQM 681

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDG-LLLSTLADYNLQ 167
            ++++ P+    P     L + +   G + D   LL TL D +++
Sbjct: 682 LQHSLQPS----PVTYNVLINGLCVYGNLKDADRLLVTLQDQSIR 722



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +  A   F  +T   +  +II YN +I GY  L  + EAV+ ++++    + P 
Sbjct: 490 LFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPT 549

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI  FCK+G++ +A  +   +   G     VTY+ L++GY +  +M S FD+  
Sbjct: 550 IVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLH 609

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    I P               GR  E++QL   M   G+ PD +  +T+
Sbjct: 610 EMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTV 661



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  +++L   +  RGL PD ITYNT+I  +C  + L +A QL  ++    L+P+
Sbjct: 630 LCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPS 689

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LI+  C  G + DA  +   + ++  +   V Y+ +I  +    ++++A   + 
Sbjct: 690 PVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFH 749

Query: 122 EMCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPD 154
           +M E     +I                T+A   +  ML +GI PD
Sbjct: 750 QMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPD 794



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A   F  +   GL PD+ +YN ++ G C    ++EA++    +    ++P+ +T+ I
Sbjct: 286 VDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI 345

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L + F   G +  A  +  +ML  G   ++VTY+ LI G+ +  N++ +F + E+M    
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           +  +I            +GR  EA+ L   M   G+ PD L  S L  + L   G+ E  
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLI-HGLCKRGAVEEA 464

Query: 176 I 176
           I
Sbjct: 465 I 465



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H D    ++ ++   G+  +  T   +I G C  +RL +AV    +    +  P+ ++F 
Sbjct: 215 HTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFN 274

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  FCK G +D A   F  M++ G   +V +Y+ L+ G   + +M+ A +   +M  +
Sbjct: 275 ALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENH 334

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            + P+I             G  + A ++   ML NG+ PD
Sbjct: 335 GVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPD 374



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 25/174 (14%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +  ++    L+  I TYN+++    +L   D    ++ ++    +  N  T  ILID
Sbjct: 187 ALFVLAKMKVLNLQVSIATYNSLLY---NLRHTDIMWDVYNEIKASGVPQNEYTNPILID 243

Query: 71  AFCKEGRMDDATMMFSKM--LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             C++ R+ DA     +    E GP  +VV+++ L+ G+ K  ++  A   +  M +  +
Sbjct: 244 GLCRQSRLQDAVTFLRETGGEEFGP--SVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL 301

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            P+            +AG   EA++  + M  +G+ PD      +  YN+ ++G
Sbjct: 302 LPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD------IVTYNILANG 349



 Score = 43.1 bits (100), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 55/123 (44%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +L   L D+ +    + Y TII  +C+   +  A+  F ++     + +   ++ 
Sbjct: 706 LKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSA 765

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK   + DA   F  ML  G   +      +++ + +S +  S F+++  M +  
Sbjct: 766 VINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCG 825

Query: 128 ISP 130
           + P
Sbjct: 826 LLP 828


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K C    AL LF ++TDRG+ P+ I Y+ ++ G C   ++ +A +LF K+       +
Sbjct: 208 LCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRD 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ +L++ FCK G +DDA  +   + + G    V+ Y CLI+G F+++  + A   Y+
Sbjct: 268 LITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQ 327

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M   NI P++             GR TEA+ L   M   G+ PD +  + L
Sbjct: 328 KMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNAL 379



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL ++ Q+    L PD++TY  +I G C   +  +A+ LF+++T   + PN I ++I++ 
Sbjct: 182 ALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLS 241

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+  ++ DA  +FSKM   G   +++TY+ L++G+ KS  +  AF + + + ++    
Sbjct: 242 GLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHIL 301

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + G            R  EA   Y  MLR  I PD +L + +
Sbjct: 302 GVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIM 344



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 74/122 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  AL L G++T+RGL PD I YN +I G+C +  LDEA  L  +++     PN
Sbjct: 348 LSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPN 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T++ILI   CK G ++ A  +F +M + G   +VVT++ LI+G  K+  ++ A  ++ 
Sbjct: 408 NHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFY 467

Query: 122 EM 123
           +M
Sbjct: 468 QM 469



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL  QL D G+ PDI TYN +I G+C    ++ A +LF+++      P+S+T+  LID
Sbjct: 510 AYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLID 569

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              + GR +DA  +F +M++KG      TY  ++    +  N+  A  V+
Sbjct: 570 GLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVW 619



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 93/184 (50%), Gaps = 27/184 (14%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI---- 63
           ++ A  +F ++   G  P ++T+N++I G C  NRL+EA  LF ++  V+ KP+      
Sbjct: 424 INKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVR-KPSLFLRLS 482

Query: 64  ----------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
                     +  ++++  C+ G +  A  +  ++++ G   ++ TY+ LI+G+ K  N+
Sbjct: 483 QGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNI 542

Query: 114 KSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             AF +++EM      P+             AGR  +A+++++ M++ G +P+     T+
Sbjct: 543 NGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTI 602

Query: 162 ADYN 165
             ++
Sbjct: 603 MTWS 606



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +LD A  L   LT  G    +I Y  +I G     R +EA   ++K+    +KP+ +
Sbjct: 280 KSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVM 339

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +TI+I    +EGR+ +A  +  +M E+G + + + Y+ LI G+     +  A  +  E+
Sbjct: 340 LYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEI 399

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +++  PN              G   +A  ++  M + G +P  +  ++L +
Sbjct: 400 SKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLIN 451



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 62/130 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIKE   +   K+  +L +  ++     ++ +I  Y      ++AV+ F  +     KP+
Sbjct: 103 LIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPD 162

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F +++    ++     A  ++++ML+     +VVTY  LI G  K+   + A  +++
Sbjct: 163 LFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFD 222

Query: 122 EMCENNISPN 131
           EM +  I PN
Sbjct: 223 EMTDRGILPN 232



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A KLF ++  +G  PD +TY T+I G     R ++A+++FE++      P S T+ 
Sbjct: 541 NINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYK 600

Query: 67  ILIDAFCKEGRMDDATMMFSKMLE 90
            ++   C+E  +  A  ++ K L 
Sbjct: 601 TIMTWSCRENNISLALSVWMKYLR 624



 Score = 43.1 bits (100), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 12/133 (9%)

Query: 41  NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           N  +   ++ ++L    +K +S  F++LI+A+ + G  + A   F  M +   K ++  +
Sbjct: 107 NAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAF 166

Query: 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLR 148
           + ++    + +    A  VY +M + N++P++              +  +A+ L+D M  
Sbjct: 167 NLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTD 226

Query: 149 NGIMPDGLLLSTL 161
            GI+P+ ++ S +
Sbjct: 227 RGILPNQIIYSIV 239


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L+ Q+  + + PD+ TYN +I G+ ++++L+ A+ LF K+    + PN  TF I
Sbjct: 217 VNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNI 276

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCKEG+++DA ++ + M++   K +VVTY+ L+DGY     +  A D+++ M    
Sbjct: 277 LVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGG 336

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  N+    T            EA+ L++ M    I+P+ +  S+L D
Sbjct: 337 VIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLID 384



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  AL    ++  +G   D ++Y T+I G C + R+  A+QL +++    ++PN++ + 
Sbjct: 146 HIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYN 205

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++ID  CK   ++DA  ++S+M+ K    +V TY+ LI G+     +  A D++ +M + 
Sbjct: 206 MIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKE 265

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI+PN+             G+  +A  +   M+++ I PD +  ++L D
Sbjct: 266 NINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMD 314



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +F  +   G+  ++  Y T++ G+C +  +DEA+ LFE++ C ++ PN +T++ 
Sbjct: 322 VNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSS 381

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+  A  +  +M ++G   N+VTYS ++D   K+ ++  A  +   + +  
Sbjct: 382 LIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQG 441

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I P++            +GR  +A  +++ +L  G
Sbjct: 442 IRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKG 476



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALKL  ++ DRG  P+I+TY++I+   C  + +D+A+ L   L    ++P+  T+TILI 
Sbjct: 395 ALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIK 454

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GR++DA  +F  +L KG   +V  Y+ +I G+        A  +  +M +N   P
Sbjct: 455 GLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIP 514

Query: 131 NIAGRPTEAMQLYD 144
           N        + L++
Sbjct: 515 NAKTYELVILSLFE 528



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A  +   +    ++PD++TYN+++ GYCS+N++++A  +F+ +    +  N  
Sbjct: 283 KEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQ 342

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +++ FCK   +D+A  +F +M  +    NVVTYS LIDG  K   +  A  + +EM
Sbjct: 343 IYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEM 402

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
            +    PNI    +            +A+ L  ++   GI PD
Sbjct: 403 HDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPD 445



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ LF ++    + P++ T+N ++ G+C   ++++A  +   +    +KP+ +T+  
Sbjct: 252 LNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNS 311

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +C   +++ A  +F  M   G  ANV  Y+ +++G+ K + +  A +++EEM    
Sbjct: 312 LMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRK 371

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I PN+             GR   A++L D M   G  P+ +  S++ D
Sbjct: 372 IIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILD 419



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +  +F ++  +G  P  IT+NT+I G C    + +A+   +K+       + +++  LI+
Sbjct: 115 SFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLIN 174

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+  A  +  ++  K  + N V Y+ +ID   K++ +  AFD+Y +M    I P
Sbjct: 175 GLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICP 234

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++              +   A+ L++ M +  I P+    + L D
Sbjct: 235 DVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVD 279



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D A+ L   L D+G+ PD+ TY  +I G C   RL++A  +FE L       +
Sbjct: 421 LCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLD 480

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T++I  FC +G  D A  + SKM + G   N  TY  +I   F+     +A  +  
Sbjct: 481 VYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLR 540

Query: 122 EM 123
           EM
Sbjct: 541 EM 542



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AAL+L  ++  + ++P+ + YN II   C    +++A  L+ ++   ++ P+
Sbjct: 176 LCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPD 235

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI  F    +++ A  +F+KM ++    NV T++ L+DG+ K   +  A  V  
Sbjct: 236 VFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLA 295

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +++I P++              +  +A  ++DSM   G++ +  + +T+ +
Sbjct: 296 IMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVN 349



 Score = 42.7 bits (99), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  +   P    +N I+           A+ L +++    ++ +  TF ILI+ F + G 
Sbjct: 52  LLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGL 111

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------ 131
              +  +F+K+L+KG     +T++ LI G     ++  A   ++++       +      
Sbjct: 112 NSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGT 171

Query: 132 ------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   GR T A+QL   +    + P+ ++ + + D
Sbjct: 172 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIID 209



 Score = 39.3 bits (90), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  +F  L  +G   D+  Y  +I G+C     D+A+ L  K+      PN+ T+ +
Sbjct: 462 LEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYEL 521

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG 92
           +I +  ++   D A  +  +M+ +G
Sbjct: 522 VILSLFEKDENDTAEKLLREMIVRG 546


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+     N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D  L P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF   +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A K   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ AA KLF ++  + + PD I Y  +ICG C   ++ EA ++F K+    ++P+ +T+T
Sbjct: 95  NIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYT 154

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G M+ A  + ++M++ G   NVVTY+ L DG  K   + +A ++  EMC  
Sbjct: 155 TLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGK 214

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  NI            +G   +A++L + M   G+ PD +  +TL D
Sbjct: 215 GLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMD 263



 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 84/133 (63%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +D A ++  ++ ++G+ PD + Y T+I G+C L  +  A +LF+++   ++ P
Sbjct: 54  LLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVP 113

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + I +T +I   C+ G+M +A  +F+KM  +G + + VTY+ LIDGY KS  M+ AF ++
Sbjct: 114 DFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLH 173

Query: 121 EEMCENNISPNIA 133
            +M ++ ++PN+ 
Sbjct: 174 NQMVQSGLTPNVV 186



 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 12/155 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           RG  PD+++Y+T+I GYC    L + ++L +++    LKPN  T+  +I   CK G++DD
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A  +  +M+ +G   + V Y+ LIDG+ K  N+++A+ +++EM +  I P+         
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                G+  EA ++++ M   G+ PD +  +TL D
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLID 158



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L  ++  +GL+ +I TYN+++ G C    + +AV+L E++    + P+
Sbjct: 195 LCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPD 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITFT L+DA+CK G M  A  +  +ML++G +  V+T++ L++G+  S  ++    +  
Sbjct: 255 TITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLA 314

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            M E  I PN            I        ++Y  M   G+MPD
Sbjct: 315 WMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPD 359



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ DRGL+P +IT+N ++ G+C    L++  +L   +    + PN+ T+  L+ 
Sbjct: 274 AHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMK 333

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C    M   T ++  M  +G   +  TY+ LI G+ K++NMK A+ +++EM E   + 
Sbjct: 334 QYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNL 393

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +             + +EA +L++ M R G+  D  + +   D
Sbjct: 394 TASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVD 438



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 64/116 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+   +L   + ++G+ P+  TYN+++  YC  N +    ++++ +    + P+S T+ I
Sbjct: 306 LEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNI 365

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           LI   CK   M +A  +  +M EKG      +Y+ +I G+FK + +  A +++EEM
Sbjct: 366 LIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEM 421



 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 60/114 (52%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +++  +  RG+ PD  TYN +I G+C    + EA  L +++        + ++  +I  F
Sbjct: 346 EIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGF 405

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            K+ ++ +A  +F +M  +G  A+   Y+  +D  +   NM++A ++ +E  EN
Sbjct: 406 FKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIEN 459


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++S ++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L  +
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSAD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L  D+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   +  D +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSADLITYNTL 282



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|195650415|gb|ACG44675.1| hypothetical protein [Zea mays]
          Length = 558

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+++   +   G EP I TYN+++ G C + RL+EA++L +KL    L P+
Sbjct: 222 LCKRGRVTKAMEVLDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTI++D FCK GR ++AT +F   +  G      TY+ L++G  K  N   AF +  
Sbjct: 282 IYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGXCKEGNPLKAFALLM 341

Query: 122 EMCENNISPNI---------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           EMC NN +  +               AG  + A Q Y  M R G   DG  L TLA
Sbjct: 342 EMCGNNDAACLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLA 397



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 12/141 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD  ++ T +   C     DEA    +++     +P+  TF+ ++   CK GR+  A  +
Sbjct: 175 PDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 234

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
              ML  G +  + TY+ L+ G      ++ A ++ +++ ++ ++P+I            
Sbjct: 235 LDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCK 294

Query: 133 AGRPTEAMQLYDSMLRNGIMP 153
            GR  EA  ++   +  G+ P
Sbjct: 295 VGRTEEATAIFHDAIGMGLSP 315


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K C    AL LF ++TDRG+ P+ I Y+ ++ G C   ++ +A +LF K+       +
Sbjct: 208 LCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRD 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ +L++ FCK G +DDA  +   + + G    V+ Y CLI+G F+++  + A   Y+
Sbjct: 268 LITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQ 327

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M   NI P++             GR TEA+ L   M   G+ PD +  + L
Sbjct: 328 KMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNAL 379



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+++     AL ++ Q+    L PD++TY  +I G C   +  +A+ LF+++T   + PN
Sbjct: 173 LVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPN 232

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I ++I++   C+  ++ DA  +FSKM   G   +++TY+ L++G+ KS  +  AF + +
Sbjct: 233 QIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQ 292

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + ++     + G            R  EA   Y  MLR  I PD +L + +
Sbjct: 293 LLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIM 344



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 74/122 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  AL L G++T+RGL PD I YN +I G+C +  LDEA  L  +++     PN
Sbjct: 348 LSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPN 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T++ILI   CK G ++ A  +F +M + G   +VVT++ LI+G  K+  ++ A  ++ 
Sbjct: 408 NHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFY 467

Query: 122 EM 123
           +M
Sbjct: 468 QM 469



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL  QL D G+ PDI TYN +I G+C    ++ A +LF+++      P+S+T+  LID
Sbjct: 510 AYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLID 569

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              + GR +DA  +F +M++KG      TY  ++    +  N+  A  V+
Sbjct: 570 GLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVW 619



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 93/184 (50%), Gaps = 27/184 (14%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI---- 63
           ++ A  +F ++   G  P ++T+N++I G C  NRL+EA  LF ++  V+ KP+      
Sbjct: 424 INKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVR-KPSLFLRLS 482

Query: 64  ----------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
                     +  ++++  C+ G +  A  +  ++++ G   ++ TY+ LI+G+ K  N+
Sbjct: 483 QGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNI 542

Query: 114 KSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             AF +++EM      P+             AGR  +A+++++ M++ G +P+     T+
Sbjct: 543 NGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTI 602

Query: 162 ADYN 165
             ++
Sbjct: 603 MTWS 606



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 65/128 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +LD A  L   LT  G    +I Y  +I G     R +EA   ++K+    +KP+ +
Sbjct: 280 KSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVM 339

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +TI+I    +EGR+ +A  +  +M E+G + + + Y+ LI G+     +  A  +  E+
Sbjct: 340 LYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEI 399

Query: 124 CENNISPN 131
            +++  PN
Sbjct: 400 SKHDCFPN 407



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +    + A   + ++    ++PD++ Y  +I G     R+ EA+ L  ++T   L+P+
Sbjct: 313 LFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPD 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I +  LI  FC  G +D+A  +  ++ +     N  TYS LI G  K+  +  A  +++
Sbjct: 373 TICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFK 432

Query: 122 EMCENNISPNIA 133
           EM +    P++ 
Sbjct: 433 EMEKLGCLPSVV 444



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 62/130 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIKE   +   K+  +L +  ++     ++ +I  Y      ++AV+ F  +     KP+
Sbjct: 103 LIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPD 162

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F +++    ++     A  ++++ML+     +VVTY  LI G  K+   + A  +++
Sbjct: 163 LFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFD 222

Query: 122 EMCENNISPN 131
           EM +  I PN
Sbjct: 223 EMTDRGILPN 232



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A KLF ++  +G  PD +TY T+I G     R ++A+++FE++      P S T+ 
Sbjct: 541 NINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYK 600

Query: 67  ILIDAFCKEGRMDDATMMFSKMLE 90
            ++   C+E  +  A  ++ K L 
Sbjct: 601 TIMTWSCRENNISLALSVWMKYLR 624



 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 65/133 (48%), Gaps = 12/133 (9%)

Query: 41  NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           N  +   ++ ++L    +K +S  F++LI+A+ + G  + A   FS M +   K ++  +
Sbjct: 107 NAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAF 166

Query: 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLR 148
           + ++    + +    A  VY +M + N++P++              +  +A+ L+D M  
Sbjct: 167 NLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTD 226

Query: 149 NGIMPDGLLLSTL 161
            GI+P+ ++ S +
Sbjct: 227 RGILPNQIIYSIV 239


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  GL PD++T+ T++ G C  +R+ EA+  F ++     +PN +TFT 
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTT 189

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G +   +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVS 249

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR ++A  L+  M   GI PD
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F  +      PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI+ +CK GR+DD   +F +M  +G  A+ + Y  LI G+ K  N+  A D+++
Sbjct: 581 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 640

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 641 EMISSGVYPD 650



 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA   LF ++ ++G+ PD+ TYN++I G+CS  R  +A QL +++   ++ P+ +T+ 
Sbjct: 271 HSDAQ-NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+AF KEG+  +A  ++ +ML +G   N +TY+ +IDG+ K   + +A D++  M   
Sbjct: 330 ALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATK 389

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             SP++            A R  + M+L   M R G++ + +  +TL
Sbjct: 390 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTL 436



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 23/183 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  RG+ P+ ITYN++I G+C  +RLD A  +F  +      P+
Sbjct: 335 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFT LID +C   R+DD   +  +M  +G  AN VTY+ LI G+    ++ +A D+ +
Sbjct: 395 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 454

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLR-----------NGIMPDGLLL 158
           +M  + + P+I             G+  +A++++ +M +           NG+ PD L  
Sbjct: 455 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 514

Query: 159 STL 161
           + L
Sbjct: 515 NIL 517



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD++TYN +ICG  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 506 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    NVVT++ LI+GY K+  +    +++ EM    I  +          
Sbjct: 566 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 625

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    A+ ++  M+ +G+ PD + +  +
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNM 657



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F  +  +G  PD+ T+ T+I GYC   R+D+ ++L  ++    L  N++
Sbjct: 372 KQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTV 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC  G ++ A  +  +M+  G   ++VT + L+DG   +  +K A ++++ M
Sbjct: 432 TYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAM 491

Query: 124 CE-----------NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 492 QKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 161 LAD 163
           + D
Sbjct: 552 MID 554



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 48/207 (23%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL  F Q+ +    P+++T+ T++ G C   R+ EAV L +++    L+P  IT
Sbjct: 162 EDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT 221

Query: 65  ------------------------------------FTILIDAFCKEGRMDDATMMFSKM 88
                                               ++ +ID+ CK+GR  DA  +F++M
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
            EKG   ++ TY+ +I G+  S     A  + +EM E  ISP++             G+ 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA +LYD ML  GI+P+ +  +++ D
Sbjct: 342 FEAAELYDEMLPRGIIPNTITYNSMID 368



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 23/155 (14%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + L+ ++  + +  DI ++N +I  +CS ++L  A+  F K+T + L P+ +TFT L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL 155

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C E R+ +A   F +M E   + NVVT++ L++G                +C    
Sbjct: 156 LHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNG----------------LCRE-- 197

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                GR  EA+ L D M+ +G+ P  +   T+ D
Sbjct: 198 -----GRIVEAVALLDRMMEDGLQPTQITYGTIVD 227



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ Y+ II   C   R  +A  LF ++    + P+  T+  +I  FC  GR  DA  +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG--- 134
             +MLE+    +VVTY+ LI+ + K      A ++Y+EM    I PN       I G   
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 372

Query: 135 --RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             R   A  ++  M   G  PD    +TL D
Sbjct: 373 QDRLDAAEDMFYLMATKGCSPDVFTFTTLID 403



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 69/122 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+++T+NT+I GYC   R+D+ ++LF ++    +  +
Sbjct: 556 LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVAD 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I +  LI  F K G ++ A  +F +M+  G   + +T   ++ G++  + ++ A  + E
Sbjct: 616 AIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLE 675

Query: 122 EM 123
           ++
Sbjct: 676 DL 677


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF ++  +G+  +IITYN +I G+C+  R D+  +L   +   ++ PN
Sbjct: 371 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 430

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF++LID+F KEG++ +A  +  +M+ +G   + +TY+ LIDG+ K  ++  A  + +
Sbjct: 431 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 490

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      PNI            A R  + ++L+  M   G++ D +  +TL
Sbjct: 491 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 542



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 76/132 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A +L  ++  RG+ PD ITY ++I G+C  N LD+A Q+ + +      PN
Sbjct: 441 FVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 500

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILI+ +CK  R+DD   +F KM  +G  A+ VTY+ LI G+ +   +  A ++++
Sbjct: 501 IRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQ 560

Query: 122 EMCENNISPNIA 133
           EM    + PNI 
Sbjct: 561 EMVSRKVPPNIV 572



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 91/162 (56%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HLD A ++   +  +G +P+I T+N +I GYC  NR+D+ ++LF K++   +  +++
Sbjct: 478 KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 537

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC+ G+++ A  +F +M+ +    N+VTY  L+DG   +   + A +++E++
Sbjct: 538 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 597

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            ++ +  +I            A +  +A  L+ S+   G+ P
Sbjct: 598 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 639



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL+L  ++ + G +PD+IT NT++ G C   +  EA+ L +K+     +PN++T
Sbjct: 269 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 328

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +++  CK G+   A  +  KM E+  K + V YS +IDG  K  ++ +AF+++ EM 
Sbjct: 329 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 388

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
              I+ NI            AGR  +  +L   M++  I P+ +  S L D  ++    +
Sbjct: 389 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 448

Query: 173 E 173
           E
Sbjct: 449 E 449



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 12/175 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  L+LF +++ RG+  D +TYNT+I G+C L +L+ A +LF+++   ++ PN +
Sbjct: 513 KANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIV 572

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+D  C  G  + A  +F K+ +   + ++  Y+ +I G   +  +  A+D++  +
Sbjct: 573 TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 632

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
               + P +             G  +EA  L+  M  +G  PDG   + L   +L
Sbjct: 633 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL 687



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 68/121 (56%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L  ++ +R ++ D + Y+ II G C    LD A  LF ++    +  N IT+ ILI 
Sbjct: 345 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIG 404

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC  GR DD   +   M+++    NVVT+S LID + K   ++ A ++++EM    I+P
Sbjct: 405 GFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 464

Query: 131 N 131
           +
Sbjct: 465 D 465



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL++F ++    +E DI  YN II G C+ +++D+A  LF  L    +KP   T+ I+
Sbjct: 588 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 647

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           I   CK+G + +A ++F KM E G   +  TY+ LI  +    +   +  + EE+
Sbjct: 648 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 702



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K    D  L L  Q+  +G+  ++ T + +I  +C   +L  A     K+  +  +PN
Sbjct: 196 IAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPN 255

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITF+ LI+  C EGR+ +A  +  +M+E G K +++T + L++G   S     A  + +
Sbjct: 256 TITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLID 315

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M E    PN             +G+   AM+L   M    I  D +  S + D
Sbjct: 316 KMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 369



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF  +      P +I ++ +        + D  + L +++    +  N  T +I+
Sbjct: 168 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 227

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ FC+  ++  A     K+++ G + N +T+S LI+G      +  A ++ + M E   
Sbjct: 228 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 287

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGL 156
            P+            ++G+  EAM L D M+  G  P+ +
Sbjct: 288 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAV 327



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  LF  L  +G++P + TYN +I G C    L EA  LF K+      P+  T+ I
Sbjct: 622 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNI 681

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A   +G    +  +  ++   G   +  T   +ID    S +  + F  Y    ++ 
Sbjct: 682 LIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID--MLSDDKANYFSKYHNCSKST 739

Query: 128 ISPNIAGRPTEAMQLYDSMLR 148
              N   +P+++   +  +LR
Sbjct: 740 SFWNQPEKPSDSWN-WKCLLR 759


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D ALK+F   ++    PD++ Y+T+I G C   RLDEA +LFEK+     +P+
Sbjct: 276 LCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPD 335

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT L+D  CK  R+ +A  +   M ++    NV+TYS LIDG  K+  ++ A +V++
Sbjct: 336 VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 395

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    I PN+    +             A+ L + M   G +PD +  +TL D
Sbjct: 396 RMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLID 449



 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A +LFG +  +   PD+ITY+ +I G+C L R+D A  LF+ +    + P+
Sbjct: 451 LCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 510

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ L++ +C  G +DDA  +  +M+      +V TY+ L+DG+ K   M  A  V +
Sbjct: 511 VVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLK 570

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +    PN+            AG+PT A +L + M+ NG+ P+ +   +L
Sbjct: 571 RMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSL 622



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++F ++  RG+EP+++TYN++I G+C  N +D A+ L E++T     P+
Sbjct: 381 LCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD 440

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LID  CK GR  +A  +F  M  K    +V+TYSCLI G+ K + +  A  +++
Sbjct: 441 IITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFD 500

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +  + P++            AG   +A +L + M+ +   PD    ++L D
Sbjct: 501 DMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 554



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 93/166 (56%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++ +RGL+PD  +Y+T++ G C   ++D A+++FE  +     P+ + ++ 
Sbjct: 247 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 306

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK GR+D+A  +F KM E   + +VVT++ L+DG  K   ++ A  V E M + N
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 366

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +PN+             G+  +A +++  M+  GI P+ +  ++L
Sbjct: 367 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSL 412



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 15/172 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++ + G  PD   YN +I   C      +A+  F  + C   + N
Sbjct: 69  LCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMEC---EKN 125

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+TI+ID  CK  R+ +AT  F+KM +KG   N  TY+ LI+G+ K   +  A+ + +
Sbjct: 126 VITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 185

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E+ ++PN+    T             A +L+  M+ NG MP+ +  +TL
Sbjct: 186 EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTL 237



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 12/150 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E ++IT+  +I G C  NRL EA   F K+      PN  T+ +LI+ FCK  ++  A +
Sbjct: 123 EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 182

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
           +  +M E G   NVVTYS +I G+ +   + +A+ ++ +M EN   PN+           
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 242

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             G   EA +L D M   G+ PD     TL
Sbjct: 243 RNGLMDEAYELLDEMRERGLQPDKFSYDTL 272



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A KLF ++ +   EPD++T+  ++ G C  +RL EA Q+ E +      PN
Sbjct: 311 LCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 370

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS-------------------- 101
            IT++ LID  CK G++ DA  +F +M+ +G + NVVTY+                    
Sbjct: 371 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 430

Query: 102 ---------------CLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG----- 134
                           LIDG  K+     A  ++ +M     +P+       I G     
Sbjct: 431 EMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE 490

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           R   A  L+D ML+  ++PD +  STL +
Sbjct: 491 RIDMARTLFDDMLKQAVLPDVVTFSTLVE 519



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A   F ++  +G  P+  TYN +I G+C ++++  A  L +++    L PN
Sbjct: 136 LCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPN 195

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ +I  FC++ ++D A  +F +M+E G   N+VTY+ L+ G  ++  M  A+++ +
Sbjct: 196 VVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLD 255

Query: 122 EMCENNISPN 131
           EM E  + P+
Sbjct: 256 EMRERGLQPD 265



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 13/159 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++      PD+ TY +++ G+C + R+ EA ++ +++     +PN +T+T 
Sbjct: 527 VDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTA 586

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE--EMCE 125
           LIDAFC+ G+   A  +  +M+  G + NV+TY  LI G+  + +++ A  + E  E  E
Sbjct: 587 LIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDE 646

Query: 126 NNISPNIA-----------GRPTEAMQLYDSMLRNGIMP 153
           N  +   A           GR + A++L +++ ++G  P
Sbjct: 647 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPP 685



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 10/156 (6%)

Query: 9   DAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           DAAL+ F   +  +G + ++ TYN +        R+DE   + +      + PN  T+ +
Sbjct: 5   DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CEN 126
           +I   CK G +D A  +  +M E GP  +   Y+ +I    K++N   A D +  M CE 
Sbjct: 65  VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK 124

Query: 127 N-ISPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           N I+  I       A R  EA   +  M + G +P+
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPN 160



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILI 69
           A +L  ++   G++P++ITY ++I G+C    L+EA ++ E+L   +  K +   + +++
Sbjct: 600 AYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMM 659

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D  C+ GRM  A  +   + + G       Y  LI G  + + +  A +V EEM  +  S
Sbjct: 660 DGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKS 719

Query: 130 -PNI------------AGRPTEAMQLYDSMLRN 149
            PN              GR  EA  L D +L N
Sbjct: 720 RPNAEAYEAVIQELAREGRHEEANALADELLGN 752



 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KP 60
           L +   + AAL+L   +   G  P    Y  +I G C    L +A+++ E++T  +  +P
Sbjct: 662 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRP 721

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKML 89
           N+  +  +I    +EGR ++A  +  ++L
Sbjct: 722 NAEAYEAVIQELAREGRHEEANALADELL 750


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 98/172 (56%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A  L+ ++  + + PD++TY+++I G+C + +L  AV LF ++    + PN  
Sbjct: 210 KDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVY 269

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF+ILID FCKEG++ +A  + + M++K  K +VVTY+ L+DGY   + +  A  ++  M
Sbjct: 270 TFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVM 329

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  ++P++                 EAM+L++ M    I P+ +  ++L D
Sbjct: 330 AQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVD 381



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 90/160 (56%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  LF  +  RG+ PD+ +Y+ +I G+C +  +DEA++LFE++ C Q+ PN +T+ 
Sbjct: 318 QVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYN 377

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D  CK GR   A  +  +M ++G  +N++TY+ ++D   K+ ++  A  +  ++ E 
Sbjct: 378 SLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEK 437

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            I P+I             GR  +A ++++ +L  G  P+
Sbjct: 438 GIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPN 477



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 66/120 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  H+D A+ L  ++ ++G++PDI TY  +I G C + RLD+A ++FE L      PN  
Sbjct: 420 KNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIY 479

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI+ FC +G  D+   M SKM + G   N +TY  LI   F+      A  +  EM
Sbjct: 480 TYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREM 539



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL+L  ++ DRG   +IITYN+I+   C  N +D+A+ L  K+    ++P+
Sbjct: 383 LCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPD 442

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T+LI+  CK GR+DDA  +F  +L KG   N+ TY+ LI+G+           +  
Sbjct: 443 IFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLS 502

Query: 122 EMCENNISPN 131
           +M +N   PN
Sbjct: 503 KMKDNGCIPN 512



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 14/171 (8%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E H   AL    ++  +G + D ++Y T+I G C +     AVQL  ++    ++PN + 
Sbjct: 143 EVH--KALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVM 200

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ +ID+ CK+  ++DA  ++ +M+ K    +VVTYS LI G+     +K A D++  M 
Sbjct: 201 YSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMI 260

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +NI+PN+             G+  EA  +   M++  +  D +  ++L D
Sbjct: 261 SDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMD 311



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KLF ++  + + P+++TYN+++ G C   R   A++L +++       N IT+  
Sbjct: 354 VDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNS 413

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++DA CK   +D A ++ +K+ EKG + ++ TY+ LI+G  K   +  A  V+E++    
Sbjct: 414 ILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKG 473

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            SPNI             G   E + +   M  NG +P+ +    L
Sbjct: 474 YSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEIL 519



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  +  +F ++  +G  PD +T+  +I G C    + +A+   +K+     + + +++ 
Sbjct: 108 HIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYG 167

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  C+ G    A  +  ++  K  + NVV YS +ID   K + +  AFD+Y EM   
Sbjct: 168 TLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSK 227

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP+            + G+   A+ L++ M+ + I P+    S L D
Sbjct: 228 RISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILID 276



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 83/157 (52%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA++L  ++  + + P+++ Y+TII   C    +++A  L+ ++   ++ P+ +T++ LI
Sbjct: 181 AAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLI 240

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC  G++  A  +F++M+      NV T+S LIDG+ K   ++ A +V   M + N+ 
Sbjct: 241 SGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVK 300

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            ++              +  +A  L++ M + G+ PD
Sbjct: 301 LDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPD 337



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +   +  + ++ D++TYN+++ GYC + ++++A  LF  +    + P+  
Sbjct: 280 KEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVW 339

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++I+I+ FCK   +D+A  +F +M  K    NVVTY+ L+DG  KS     A ++ +EM
Sbjct: 340 SYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEM 399

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +     NI                 +A+ L   +   GI PD    + L +
Sbjct: 400 HDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLIN 451



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A K+F  L  +G  P+I TY ++I G+C+    DE + +  K+      PN
Sbjct: 453 LCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPN 512

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +IT+ ILI +  ++   D A  +  +M+ +G
Sbjct: 513 AITYEILIHSLFEKDENDKAEKLLREMIARG 543



 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P  I +  I+       +   A+ L +++    +KP+ IT  +L++ F + G +  +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 85  FSKMLEKGPKANVVTYSCLIDG-----------YFKSQNMKSAFDVYEEMCENNISPNI- 132
           F+K+L+KG   + VT++ LI G           YF  + +   F + +++    +   + 
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQL-DQVSYGTLINGLC 174

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             G    A+QL   +    + P+ ++ ST+ D
Sbjct: 175 RVGETKAAVQLLRRVDGKLVRPNVVMYSTIID 206


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALKLFG +  +G EP++ TYN +I G    +R++EA +LF  L    L+P++IT+T+ ID
Sbjct: 167 ALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR++DA +M   M EKG   +VV+++ +I+G  K + +  A  +   M     SP
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSP 286

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           N             AG+  +AM  +  ML+ G+ P      T+  YN+   G
Sbjct: 287 NAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKP------TVVTYNILVDG 332



 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 16/173 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD ALK+F     RG  PD++TYN +I G+C  ++LDEA ++ +++    L P+ +
Sbjct: 57  KVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVV 116

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS-QNMKSAFDVYEE 122
           T+  L++  CK GR+D+A M+   +++KG   NV+TYS LI G  +  + +  A  ++  
Sbjct: 117 TYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGS 173

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + +    P +              R  EA +L+  ++++G+ PD +  +   D
Sbjct: 174 VLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 15/177 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A +LF  L   GLEPD ITY   I G C   R+++A+ + + +      P+
Sbjct: 193 LLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 252

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++   +I+  CKE R+D+A ++ S M  KG   N ++++ LI G  ++   K A   ++
Sbjct: 253 VVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFK 312

Query: 122 EMCENNISPNIA---------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  + P +                GR  EA+ L+D+M+  G +PD +  S L D
Sbjct: 313 EMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALID 369



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 15/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  L   +  +G  P+ I++NT+ICG C   +  +A+  F+++    +KP 
Sbjct: 263 LCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPT 322

Query: 62  SITFTILIDAFCK---EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +T+ IL+D  CK   EGR+ +A  +F  M+EKG   +VVTYS LIDG  K+  +  A  
Sbjct: 323 VVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARR 382

Query: 119 VYEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +   M      PN       I+G     +  EA++L+ +M+  G +PD +   T+
Sbjct: 383 LLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTI 437



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 85/157 (54%), Gaps = 16/157 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L+ ++   G  PD++TYNT++ G+C +  LDEA+++F+        P+ +T+  LI+
Sbjct: 29  AQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALIN 88

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK  ++D+A  +  +M+ +    +VVTY+ L++G  K+  +  A  +   + +   SP
Sbjct: 89  GFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSP 145

Query: 131 NIAGRPT-------------EAMQLYDSMLRNGIMPD 154
           N+    T             EA++L+ S+L+ G  P+
Sbjct: 146 NVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPE 182



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 15/156 (9%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +   G  P+ ITYN ++ G C+  R+ +A  L+E++      P+ +T+  L+  FCK G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           +D+A  +F   +++G   +VVTY+ LI+G+ K+  +  A  + + M   N+ P++     
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   GR  EA  L   ++  G  P+ +  STL
Sbjct: 121 LVNGLCKNGRVDEARML---IVDKGFSPNVITYSTL 153



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYC-SLNRLDEAVQLFEKLTCVQLKP 60
           L K   +D A  L   + D+G  P++ITY+T+I G C  L  + EA++LF  +     +P
Sbjct: 125 LCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEP 181

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              T+ ILID   KE R+++A  +FS +++ G + + +TY+  IDG  K+  ++ A  + 
Sbjct: 182 EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLML 241

Query: 121 EEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++M E    P++              R  EA  L   M   G  P+ +  +TL
Sbjct: 242 KDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL 294



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A+ LF  + ++G  PD++TY+ +I G     +LD+A +L   +      PN  
Sbjct: 338 QEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVY 397

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           T+  LI   C   ++D+A  +F  M+EKG   + +TY  +I
Sbjct: 398 TYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L G +  +G  P++ TYN++I G C L ++DEA++LF  +      P+
Sbjct: 371 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPD 430

Query: 62  SITFTILIDA 71
           +IT+  +I A
Sbjct: 431 TITYGTIISA 440


>gi|115452873|ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group]
 gi|108708021|gb|ABF95816.1| expressed protein [Oryza sativa Japonica Group]
 gi|113548508|dbj|BAF11951.1| Os03g0336000 [Oryza sativa Japonica Group]
 gi|125543773|gb|EAY89912.1| hypothetical protein OsI_11461 [Oryza sativa Indica Group]
 gi|215712300|dbj|BAG94427.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 545

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKP 60
           L K   +  A+++F  +   G EP I TYN++I G C + RL+EA+ L  KL    +  P
Sbjct: 208 LCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTP 267

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  TFTI++D FCK GR D+AT +F   +  G    + TY+ L++G+ K  N   A+ + 
Sbjct: 268 DIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLL 327

Query: 121 EEMCENNISPN-------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            EMC N   P               AG  + A Q Y  M R G   DG  L TLA
Sbjct: 328 MEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLA 382



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 22/180 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D+A+ LF  L   G+ PD  +Y T +   C     DEA +  +++     +P   TF+ +
Sbjct: 145 DSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAV 204

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-N 127
           +   CK GR+  A  +F  M   G +  + TY+ LI G      ++ A D+  ++ E+  
Sbjct: 205 VGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPK 264

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +P+I             GR  EA  ++   +RNG+ P      T+  YN   +G   HC
Sbjct: 265 QTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSP------TIFTYNALLNG---HC 315



 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YN I+         D AV LF  L    + P++ ++   +   C++G  D+A     +M+
Sbjct: 131 YNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMV 190

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
            +G +  V T+S ++    K   +  A +V++ M      P I             GR  
Sbjct: 191 ARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLE 250

Query: 138 EAMQLYDSM 146
           EA+ L + +
Sbjct: 251 EALDLLNKL 259


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D ALK+F   ++    PD++ Y+T+I G C   RLDEA +LFEK+     +P+
Sbjct: 157 LCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPD 216

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT L+D  CK  R+ +A  +   M ++    NV+TYS LIDG  K+  ++ A +V++
Sbjct: 217 VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 276

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    I PN+    +             A+ L + M   G +PD +  +TL D
Sbjct: 277 RMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLID 330



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A +LFG +  +   PD+ITY+ +I G+C L R+D A  LF+ +    + P+
Sbjct: 332 LCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 391

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ L++ +C  G +DDA  +  +M+      +V TY+ L+DG+ K   M  A  V +
Sbjct: 392 VVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLK 451

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +    PN+            AG+PT A +L + M+ NG+ P+ +   +L
Sbjct: 452 RMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSL 503



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++F ++  RG+EP+++TYN++I G+C  N +D A+ L E++T     P+
Sbjct: 262 LCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD 321

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LID  CK GR  +A  +F  M  K    +V+TYSCLI G+ K + +  A  +++
Sbjct: 322 IITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFD 381

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +  + P++            AG   +A +L + M+ +   PD    ++L D
Sbjct: 382 DMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 435



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 93/166 (56%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++ +RGL+PD  +Y+T++ G C   ++D A+++FE  +     P+ + ++ 
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK GR+D+A  +F KM E   + +VVT++ L+DG  K   ++ A  V E M + N
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +PN+             G+  +A +++  M+  GI P+ +  ++L
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSL 293



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 12/150 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E ++IT+  +I G C  NRL EA   F K+      PN  T+ +LI+ FCK  ++  A +
Sbjct: 4   EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 63

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
           +  +M E G   NVVTYS +I G+ +   + +A+ ++ +M EN   PN+           
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             G   EA +L D M   G+ PD     TL
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTL 153



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A KLF ++ +   EPD++T+  ++ G C  +RL EA Q+ E +      PN
Sbjct: 192 LCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 251

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS-------------------- 101
            IT++ LID  CK G++ DA  +F +M+ +G + NVVTY+                    
Sbjct: 252 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 311

Query: 102 ---------------CLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG----- 134
                           LIDG  K+     A  ++ +M     +P+       I G     
Sbjct: 312 EMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE 371

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           R   A  L+D ML+  ++PD +  STL +
Sbjct: 372 RIDMARTLFDDMLKQAVLPDVVTFSTLVE 400



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A   F ++  +G  P+  TYN +I G+C ++++  A  L +++    L PN
Sbjct: 17  LCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPN 76

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ +I  FC++ ++D A  +F +M+E G   N+VTY+ L+ G  ++  M  A+++ +
Sbjct: 77  VVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLD 136

Query: 122 EMCENNISPN 131
           EM E  + P+
Sbjct: 137 EMRERGLQPD 146



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 13/159 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++      PD+ TY +++ G+C + R+ EA ++ +++     +PN +T+T 
Sbjct: 408 VDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTA 467

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE--EMCE 125
           LIDAFC+ G+   A  +  +M+  G + NV+TY  LI G+  + +++ A  + E  E  E
Sbjct: 468 LIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDE 527

Query: 126 NNISPNIA-----------GRPTEAMQLYDSMLRNGIMP 153
           N  +   A           GR + A++L +++ ++G  P
Sbjct: 528 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPP 566



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 12/118 (10%)

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           ++ + N IT+TI+ID  CK  R+ +AT  F+KM +KG   N  TY+ LI+G+ K   +  
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 116 AFDVYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           A+ + +EM E+ ++PN+    T             A +L+  M+ NG MP+ +  +TL
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTL 118



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILI 69
           A KL  ++   G++P++ITY ++I G+C    L+EA ++ E+L   +  K +   + +++
Sbjct: 481 AYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMM 540

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D  C+ GRM  A  +   + + G       Y  LI G  + + +  A +V EEM  +  S
Sbjct: 541 DGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKS 600

Query: 130 -PNI------------AGRPTEAMQLYDSMLRN 149
            PN              GR  EA  L D +L N
Sbjct: 601 RPNAEAYEAVIQELAREGRHEEANALADELLGN 633



 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KP 60
           L +   + AAL+L   +   G  P    Y  +I G C    L +A+++ E++T  +  +P
Sbjct: 543 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRP 602

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKML 89
           N+  +  +I    +EGR ++A  +  ++L
Sbjct: 603 NAEAYEAVIQELAREGRHEEANALADELL 631


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F ++  RGL P  +++NT+I G C    LDE  +L + +   ++ P+  
Sbjct: 235 KEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVF 294

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI   CKEGR+D A  +F +M ++G + N +T++ LIDG  +S+ + SA + Y +M
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQM 354

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P++             G   +A +L D M   G+ PD +  +TL D
Sbjct: 355 LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLID 406



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 97/184 (52%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A KL  ++   G++PD ITY T+I GYC    L+ A+++ + +    +  +
Sbjct: 373 LCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLD 432

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ FT LI  FC++GR+ DA     +M+E G K +  TY+ +IDGY K  N+K  F + +
Sbjct: 433 NVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLK 492

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM  N   P +             G+   A  L ++ML  G+ PD +  + L + + ++ 
Sbjct: 493 EMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552

Query: 170 GSQE 173
            +++
Sbjct: 553 KAED 556



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A +LF ++  RGL P+ IT+  +I G C   R+D A+  + ++  + +KP+
Sbjct: 303 LCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPD 362

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L++  CK G ++ A  +  +M   G K + +TY+ LIDGY K  +++SA ++ +
Sbjct: 363 LVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRK 422

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E  +   N+A           GR  +A +    M+  G+ PD    + + D
Sbjct: 423 GMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVID 476



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD   +L   + +  + PD+ TY+ +I G C   RLD A QLF+++    L+PN
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPN 327

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITFT LID  C+  R+D A   + +ML  G K ++V Y+ L++G  K  ++  A  + +
Sbjct: 328 GITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVD 387

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P+              G    AM++   M   G++ D +  + L
Sbjct: 388 EMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTAL 439



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 12/116 (10%)

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P    + ILI+ FCKEG + DA ++F+++ ++G +   V+++ LI+G  KS+N+   F +
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRL 280

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + M EN I P++             GR   A QL+D M + G+ P+G+  + L D
Sbjct: 281 KKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALID 336



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            + ++ + G  P +  YN +I  +C    + +A  +F ++    L+P +++F  LI+  C
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
           K   +D+   +   M E     +V TYS LI G  K   +  A  +++EM +  + PN  
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 132 -----IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                I G     R   AM  Y  ML  G+ PD ++ +TL
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTL 369


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 96/167 (57%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+   G  PD+ITY T+I G+C    +DEAV L + ++    KPN++++TI
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C  GR  DA  + S+M+++G   N VT++ LI+   K   ++ A ++ ++M  N 
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  GI P+ ++ S++A
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HL+ A ++  ++   GL+P+++ YNT++ G CS  R  EA +L  ++       + +
Sbjct: 298 KEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDV 357

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FC+ G +D    +  +ML  G   +V+TY+ +I+G+ K   +  A  + + M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN             AGR  +A +L   M++ G  P+ +  +TL ++
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A+ L   ++  G +P+ ++Y  ++ G CS  R  +A +L  ++      PN +
Sbjct: 403 KEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPV 462

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI+  CK+G ++ A  +  +ML  G   ++++YS +IDG  K+   + A ++   M
Sbjct: 463 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               ISPN              GR  + +Q++D++    I  D +L + +
Sbjct: 523 VNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  +L   G E DI++YN ++ G C   R  +  +L +++  V   PN +TF  
Sbjct: 197 VDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNT 256

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G  +    + ++M E G   ++  Y+ +IDG  K  +++ A ++   M    
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           + PN+            A R  EA +L   M +     D +  + L D+  Q+
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQN 369



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + +EA++L   +    + PN
Sbjct: 471 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  +EGR++    MF  + +   +++ V Y+ +I    K      A D + 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 122 EMCENNISPN 131
            M  N   PN
Sbjct: 591 YMVSNGCMPN 600



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  +++ +G  P    Y+ I+   C       +V++ E +       ++    ++++
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLN 189

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C++G +D+A  +  K+   G +A++V+Y+ ++ G   ++      ++ +EM   + +P
Sbjct: 190 AICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAP 249

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI             G      ++   M  +G  PD  + +T+ D
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIID 294



 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++ YN ++ GYC   R  +          V + PN+ TF  ++   C  GR+ DA  +  
Sbjct: 79  VVAYNAMVAGYC---RAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +M  KG       Y  +++   +S   +++  V E M
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM 172



 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P+  T+  ++ G C+  R+ +A+++ ++++     P    + ++++A C+ G   ++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM----CENNI-SPN------ 131
            +   M  KG   +    + +++   +   +  A  +  ++    CE +I S N      
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +A R  +  +L D M+R    P+ +  +TL  Y
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  L  A KL+ ++  R ++P+I TY+++I G+C L+RL EA Q+ E +      PN
Sbjct: 333 FVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPN 392

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ FCK  R+D    +F +M ++G   N VTY+ LI G+F++++  +A  V++
Sbjct: 393 VVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 452

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M    + PNI             G+  +AM +++ + R+ + PD
Sbjct: 453 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 497



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D AL L  ++    +E +++ Y+T+I   C     D+A+ LF ++    ++PN
Sbjct: 228 LCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 287

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ LI   C  GR  DA+ + S M+E+    N+VT+S LID + K   +  A  +YE
Sbjct: 288 VITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYE 347

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM + +I PNI              R  EA Q+ + M+R   +P+ +  +TL +
Sbjct: 348 EMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLIN 401



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  RG +PD++TY  ++ G C     D A+ L  K+   +++ N + ++ +ID
Sbjct: 202 AVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVID 261

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK    DDA  +F++M  KG + NV+TYS LI           A  +  +M E  I+P
Sbjct: 262 SLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINP 321

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  +A +LY+ M++  I P+    S+L +
Sbjct: 322 NLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLIN 366



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
           G++   G EPDI+T N+++ G+C  NR+ +AV L +++  +  KP+++TFT LI      
Sbjct: 137 GKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLH 196

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGR 135
            +  +A  +  +M+++G + ++VTY  +++G  K  +   A ++  +M    I  N+   
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256

Query: 136 PT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQSSGSQ 172
            T            +A+ L+  M   G+ P+ +    L+S L +Y   S  S+
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASR 309



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H D AL LF ++ ++G+ P++ITY+++I   C+  R  +A +L   +   ++ PN
Sbjct: 263 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPN 322

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            +TF+ LIDAF K+G                                   R+ +A  M  
Sbjct: 323 LVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLE 382

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT--------- 137
            M+ K    NVVTY+ LI+G+ K++ +    +++ EM +  +  N     T         
Sbjct: 383 LMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 442

Query: 138 ---EAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A  ++  M+  G+ P+ L  + L D
Sbjct: 443 DCDNAQMVFKQMVSVGVHPNILTYNILLD 471



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 63/111 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  ++LF +++ RGL  + +TY T+I G+      D A  +F+++  V + PN +
Sbjct: 405 KAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 464

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           T+ IL+D  CK G++  A ++F  +     + ++ TY+ +I+G  K+   K
Sbjct: 465 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWK 515



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + +  LD A+ LFG +      P II ++ ++     +N+ D  +   EK+  + +  N 
Sbjct: 54  LSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNL 113

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ ILI+ FC+  R+  A  +  KM++ G + ++VT + L++G+     +  A  + ++
Sbjct: 114 YTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQ 173

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M E    P+            +  + +EA+ L D M++ G  PD
Sbjct: 174 MVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPD 217


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F ++T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +M+DA  +F +M+  G   N VT++ LIDG+ K+ ++  A + Y+EM
Sbjct: 208 TYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A +LF ++   GL P+ +T+ T+I G+C    +D A++ ++++      P+
Sbjct: 216 LCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CKEG +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF   +
Sbjct: 276 LITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           G+   A ++   ML  G+ PD
Sbjct: 336 RMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPD 380



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K  +  +    + ++ + G    +  +N ++  +C    +  A  +F+++T   L+P+
Sbjct: 111 FMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFD 230

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  N + PN              G    AM+ Y  MLR G  PD +  +TL
Sbjct: 231 EMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTL 282



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EG+   A  M  +ML  G K +  TY+ +I+ + K  ++K    + +
Sbjct: 346 DVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLK 405

Query: 122 EMCENNISP 130
           EM  +   P
Sbjct: 406 EMQRDGHVP 414



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A K   ++    +  D + Y  +I G C   +   A ++  ++  V LKP++ 
Sbjct: 323 KEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G    VVT
Sbjct: 383 TYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A K+F  +  RGL+PDI TY++++ GY     L E   LF+ +    ++P+
Sbjct: 313 LCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPD 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F  LI A  K+G++D+A ++FSKM ++G K N VTYS LI+GY K   M++A  +++
Sbjct: 373 HYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQ 432

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           EM  N +SPN              GR   A + Y  ++++G
Sbjct: 433 EMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSG 473



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++  ++   G+ P+  TY +++ G+CS  +L EA++  EK+    ++PN
Sbjct: 243 LCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPN 302

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++  +D  CK GR  +A  +F  M+++G K ++ TYS L+ GY     +     +++
Sbjct: 303 VVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFD 362

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M ++++ P+              G+  EAM ++  M + G+ P+ +  STL
Sbjct: 363 LMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTL 414



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL+L   + D G    P++++Y+T+I G       D+A   + ++   ++ PN + ++ +
Sbjct: 180 ALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSI 239

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A CK   MD A  +  +M++ G   N  TY+ L+ G+  S  +  A    E+MC N +
Sbjct: 240 IAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGV 299

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            PN+             GR TEA +++DSM++ G+ PD    S+L
Sbjct: 300 EPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSL 344



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    D A   + ++ DR + P+++ Y++II   C    +D+A+++ +++    + PN
Sbjct: 208 LLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPN 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T L+  FC  G++ +A     KM   G + NVVTYS  +D   K+     A  +++
Sbjct: 268 CFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFD 327

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P+I             G   E   L+D M+++ + PD  + +TL
Sbjct: 328 SMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTL 379



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 22/188 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL----FEKLTCVQLKPNS 62
            LD      G +  +G   + I +N ++ G C+  R D+A+ +      +L+CV   PN 
Sbjct: 105 RLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCV---PNV 161

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + TI++   C E R  +A  +   M + G     NVV+YS +IDG  K  +   A+  Y
Sbjct: 162 FSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATY 221

Query: 121 EEMCENNISPNIA-----------GRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            EM +  I PN+            G+  + AM+++D M++NG+ P+    ++L  +   S
Sbjct: 222 REMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLV-HGFCS 280

Query: 169 SGSQEHCI 176
           SG     I
Sbjct: 281 SGQLTEAI 288



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 20/164 (12%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-----CVQLKPNSITFTILIDAF 72
           +T+    P++ ++  I+ G C  NR  EA++L   +      C+   PN ++++ +ID  
Sbjct: 152 MTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCL---PNVVSYSTVIDGL 208

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G  D A   + +ML++    NVV YS +I    K Q M  A +V++ M +N ++PN 
Sbjct: 209 LKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNC 268

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                       +G+ TEA++  + M  NG+ P+ +  S+  DY
Sbjct: 269 FTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDY 312



 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 19/171 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT---CVQLKPNSITFTI 67
           AL +F +L  RG+   I + N  +      N    AV  F ++       + P   T+ I
Sbjct: 37  ALDVFDELLRRGIGAPIRSLNGALADVARDNPA-AAVSRFNRMARAGASMVTPTVHTYGI 95

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C  GR+D        +++KG +   + ++ L+ G    +    A D V   M E 
Sbjct: 96  LIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTEL 155

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRN--GIMPDGLLLSTLAD 163
           +  PN+              R  EA++L   M  +  G +P+ +  ST+ D
Sbjct: 156 SCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVID 206


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  L  A  L+ ++  RG+EP+ ITYN++I G C+  RLDEA Q+ + +      P+
Sbjct: 345 LVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPD 404

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ILI+ FCK  ++DD   +F KM  +G  A+ VTYS LI G+ +S+ +  A  V++
Sbjct: 405 IWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQ 464

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM    + P I    T A+ L D +  NG + + L
Sbjct: 465 EMVSQGVHPGIM---TYAI-LLDGLCDNGELEEAL 495



 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD AL  F ++  +G++ ++ TYN++I  +CS  R D+  QL   +   ++ PN
Sbjct: 275 LCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPN 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LID+  KEG++ +A  ++++M+ +G + N +TY+ LI G    + +  A  + +
Sbjct: 335 VVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMD 394

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P+I            A +  + M+L+  M   G++ D +  STL
Sbjct: 395 LMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTL 446



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A+ L  ++   G +P+  TY  I+   C       A+ L  K+   ++KP+ +T+T
Sbjct: 210 RVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYT 269

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+ID  CK+GR+DDA   FS+M  KG KANV TY+ LI  +           +  +M   
Sbjct: 270 IIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITR 329

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I+PN+             G+ TEA  LY+ M+  GI P+ +  ++L
Sbjct: 330 KITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSL 376



 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +  +AL L  ++  R ++P ++TY  II   C   RLD+A+  F ++    +K N  
Sbjct: 242 KSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVF 301

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI +FC  GR DD   +   M+ +    NVVT+S LID   K   +  A D+Y EM
Sbjct: 302 TYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEM 361

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
               I PN       I G     R  EA Q+ D M+  G  PD
Sbjct: 362 ITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPD 404



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 91/176 (51%), Gaps = 18/176 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A ++   +  +G +PDI TYN +I G+C   ++D+ ++LF K++   +  +++T++
Sbjct: 385 RLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYS 444

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--C 124
            LI  FC+  ++  A  +F +M+ +G    ++TY+ L+DG   +  ++ A  + ++M  C
Sbjct: 445 TLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKC 504

Query: 125 ENNISPNI----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +  +   I          A +  +A  L+ S+   G+  D      +  YN+  SG
Sbjct: 505 KMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRD------IQSYNIMLSG 554



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 16/181 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A    G++   G EP+ +T+NT++ G C   R+ EAV+L + +   Q  P+ IT   
Sbjct: 141 LGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNT 200

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  C + R+ +A  + ++M+  G + N  TY  +++   KS N  SA D+  +M    
Sbjct: 201 IVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRK 260

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL----LLSTLADYNLQSSGS 171
           I P++             GR  +A+  +  M   GI  +      L+ +   +     G+
Sbjct: 261 IKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGA 320

Query: 172 Q 172
           Q
Sbjct: 321 Q 321



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A K+F ++  +G+ P I+TY  ++ G C    L+EA+ + +++   +++ +   + I
Sbjct: 456 LIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNI 515

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   ++DDA  +F  +  KG K ++ +Y+ ++ G  K  ++  A  ++ +M E+ 
Sbjct: 516 IIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDG 575

Query: 128 ISPN-----------IAGRP-TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             P+           + G   T ++QL + M R G   D   +  + D  + SSG
Sbjct: 576 YEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMD--MLSSG 628



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +    D  L L  Q+  +G+  D+ T N +I  +C   +L  A     K+  +  +P
Sbjct: 99  LLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEP 158

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++TF  L++  C EGR+ +A  +   M+      +++T + +++G      +  A D+ 
Sbjct: 159 NTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLI 218

Query: 121 EEMCENNISPN 131
             M  N   PN
Sbjct: 219 ARMMANGCQPN 229



 Score = 42.4 bits (98), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 23/155 (14%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF  +      P +I +N +        + D  + L +++    +  +  T  I+
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIM 131

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ FC+  ++  A     K+ + G + N VT++ L++G                +C    
Sbjct: 132 INCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNG----------------LC---- 171

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              + GR  EA++L D M+ +  +PD + L+T+ +
Sbjct: 172 ---LEGRVFEAVELVDCMVLSQHVPDLITLNTIVN 203



 Score = 40.4 bits (93), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  LF ++ + G EPD  TYNT+I  +   N +  +VQL E++       +
Sbjct: 555 LCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSD 614

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
           + T  I++D     G +D +   F  ML  GP
Sbjct: 615 ASTVKIVMDML-SSGELDKS---FLNMLS-GP 641


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 137 KDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 196

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE + DDA  +F +ML KG   N V ++ LIDG+ K+  +  A ++Y++M
Sbjct: 197 TYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQM 256

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 257 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLID 308



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE   D A +LF ++  +GL P+ + + T+I G+C   R+D A+++++++    L P+ I
Sbjct: 207 KESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLI 266

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ SAF+  + M
Sbjct: 267 TYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRM 326

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
            + N   +              GR  +A ++   ML  G+ PD 
Sbjct: 327 IQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDA 370



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++     + +
Sbjct: 275 LCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 335 EVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 394

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 395 EMQRDGHVPSVV 406



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 159

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K      A ++++
Sbjct: 160 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFD 219

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 220 EMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 271



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +   ++       D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 312 KEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDAR 371

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 372 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD +TY+++I G C  +RLDEA Q+F+ +      PN
Sbjct: 313 LINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI  +CK G +DD   +F +M  +G  AN +TY  LI G+ K  N+  + D+++
Sbjct: 373 IVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQ 432

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 433 EMISSGVYPD 442



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 17/160 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG+LT  G  P ++T+NT++ G C  +R+ EA+ LF ++     KPN +TFT 
Sbjct: 31  LPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMC----KPNVVTFTT 86

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G + N +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 87  LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS 146

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I P++             GR T+A  L+  M   GI PD
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPD 186



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 24/180 (13%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA   LF ++ D+G+ PDI+TY+ +I G+CS  +  EA +L +++   ++ P+ +TF+
Sbjct: 168 HTDAQ-NLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFS 226

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE- 125
            LI+A  KEG ++ A  +  +M+  G   NVVT + L+DG   S  +K A ++++ M + 
Sbjct: 227 GLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286

Query: 126 ----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                     N + P++             G+  EA +LY+ M   GI+PD +  S++ +
Sbjct: 287 MMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L +E  +  A+ L  ++ + GL+P+ ITY TI+ G C +     A+ L  K+  +  +KP
Sbjct: 91  LCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKP 150

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + ++ +ID   K+GR  DA  +F +M +KG   ++VTYSC+I+G+  S     A  + 
Sbjct: 151 DVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLL 210

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +EM    ISP++             G    A  L   M+ +G+ P+ +  +TL D
Sbjct: 211 QEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +I G  +  +  EA +L+E++    + P+++T++ +I+  CK+ R+D+A
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    N+VT++ LI GY K+  +    +++ EM    I  N          
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    ++ ++  M+ +G+ PD + +  +
Sbjct: 418 FRKVGNINGSLDIFQEMISSGVYPDTITIRNM 449



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 23/183 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--- 58
           L+KE  L++A  L  ++   G+ P+++T NT++ G C   +L +A+++F+ +    +   
Sbjct: 232 LVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDID 291

Query: 59  --------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
                   +P+  T+ ILI     EG+  +A  ++ +M  +G   + VTYS +I+G  K 
Sbjct: 292 ATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQ 351

Query: 111 QNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLL 158
             +  A  +++ M   + SPNI            AG   + ++L+  M R GI+ + +  
Sbjct: 352 SRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITY 411

Query: 159 STL 161
            TL
Sbjct: 412 ITL 414



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+I+T+NT+I GYC    +D+ ++LF ++    +  N
Sbjct: 348 LCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ +  +F +M+  G   + +T   ++ G +  + +K A  + E
Sbjct: 408 AITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLE 467

Query: 122 EM 123
           E+
Sbjct: 468 EL 469



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 93/185 (50%), Gaps = 30/185 (16%)

Query: 10  AALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +AL L  ++ +   ++PD++ Y+ II G     R  +A  LF ++    + P+ +T++ +
Sbjct: 134 SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ FC  G+  +A  +  +ML +    +VVT+S LI+   K  ++ SA D+ +EM  + +
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 129 SPNI------------AGRPTEAMQLYDSMLR-----------NGIMPDGLLLSTLADYN 165
            PN+            +G+  +A++++ +M +           NG+ PD      +  YN
Sbjct: 254 CPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPD------VQTYN 307

Query: 166 LQSSG 170
           +  SG
Sbjct: 308 ILISG 312



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           +Q+  +  +F ILI  FC   ++  A   F K+ + G    +VT++ L+ G      +  
Sbjct: 9   LQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSE 68

Query: 116 AFDVYEEMCENNISPNIA--------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           A D++ +MC+ N+             GR  EA+ L D M+ +G+ P+ +   T+ D
Sbjct: 69  ALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +  AA+++F ++  +G+   ++TYN++I G CS  +++E V+L E++  + L PN I
Sbjct: 276 KNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEI 335

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  ++  FCK+G M DA      M E+  + +VV Y+ LIDGY +   M+ A  V E M
Sbjct: 336 TFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAM 395

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  ISPN+            +G    A  L D M   GI  D
Sbjct: 396 AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 438



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    +D A K F     R + PDI T+NT+I G C + +L +A  + + +    L P+
Sbjct: 166 LVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPS 225

Query: 62  SITFTILIDAFCKE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
             T+  LID +CK+   G M    M+  +M+E G     VT+  LI+GY K+ N  +A  
Sbjct: 226 VATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVR 285

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           V+EEM +  I+ ++             G+  E ++L + M   G+ P+
Sbjct: 286 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 15/160 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D  LK   ++ + G+ P  +T+  +I GYC  +    AV++FE++    +  + +T+ 
Sbjct: 247 HVDMLLK---EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++++   +  +M + G   N +T+ C++ G+ K   M  A D  + M E 
Sbjct: 304 SLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTER 363

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N+ P++             G+  +AM + ++M + GI P+
Sbjct: 364 NVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPN 403



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 4/145 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A  L  ++ ++G+E D++TYN +I   C    + +AV+L ++++ V L+PN +T+  +I
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC +G +  A  + ++M +   +ANVVTY+  I  + +   M  A D+  EM +  + 
Sbjct: 482 QGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541

Query: 130 PNIAGRPTEAMQLYDSMLRNGIMPD 154
           PN  G   E ++  + M+  G  PD
Sbjct: 542 PN--GITYETIK--EGMMEKGYTPD 562



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ +   +  +G+ P++ TYN +I G+        A  L +++    ++ + +T+ +
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A C +G +  A  +  +M E G + N +TY+ +I G+    N+KSA+++   M +  
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              N+             G+  EA  L + ML   ++P+G+   T+ +
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKE 552



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P   + N ++ G     R+D A + F      ++ P+  TF  +I   C+ G++  A  
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV---YEEMCENNISP 130
           +   +   G   +V TY+ LIDGY K     + + V    +EM E  ISP
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISP 262


>gi|125586172|gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group]
          Length = 523

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKP 60
           L K   +  A+++F  +   G EP I TYN++I G C + RL+EA+ L  KL    +  P
Sbjct: 208 LCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTP 267

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  TFTI++D FCK GR D+AT +F   +  G    + TY+ L++G+ K  N   A+ + 
Sbjct: 268 DIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLL 327

Query: 121 EEMCENNISPN-------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            EMC N   P               AG  + A Q Y  M R G   DG  L TLA
Sbjct: 328 MEMCGNAACPPDRISFSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLA 382



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 22/180 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D+A+ LF  L   G+ PD  +Y T +   C     DEA +  +++     +P   TF+ +
Sbjct: 145 DSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAV 204

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-N 127
           +   CK GR+  A  +F  M   G +  + TY+ LI G      ++ A D+  ++ E+  
Sbjct: 205 VGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPK 264

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +P+I             GR  EA  ++   +RNG+ P      T+  YN   +G   HC
Sbjct: 265 QTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSP------TIFTYNALLNG---HC 315



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 46/103 (44%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YN I+         D AV LF  L    + P++ ++   +   C++G  D+A     +M+
Sbjct: 131 YNDILSALAMAGDHDSAVALFRALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMV 190

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            +G +  V T+S ++    K   +  A +V++ M      P I
Sbjct: 191 ARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTI 233


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD +TY+++I G C  +RLDEA Q+F+ +      PN
Sbjct: 313 LINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI  +CK G +DD   +F +M  +G  AN +TY  LI G+ K  N+  + D+++
Sbjct: 373 IVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQ 432

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 433 EMISSGVYPD 442



 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 17/160 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG+LT  G  P ++T+NT++ G C  +R+ EA+ LF ++     KPN +TFT 
Sbjct: 31  LPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMC----KPNVVTFTT 86

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +M+E G + N +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 87  LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS 146

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I P++             GR T+A  L+  M   GI PD
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPD 186



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 24/180 (13%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA   LF ++ D+G+ PDI+TY+ +I G+CS  +  EA +L +++   ++ P+ +TF+
Sbjct: 168 HTDAQ-NLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFS 226

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE- 125
            LI+A  KEG ++ A  +  +M+  G   NVVT + L+DG   S  +K A ++++ M + 
Sbjct: 227 GLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286

Query: 126 ----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                     N + P++             G+  EA +LY+ M   GI+PD +  S++ +
Sbjct: 287 MMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L +E  +  A+ L  ++ + GL+P+ ITY TI+ G C +     A+ L  K+  +  +KP
Sbjct: 91  LCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKP 150

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + ++ +ID   K+GR  DA  +F +M +KG   ++VTYSC+I+G+  S     A  + 
Sbjct: 151 DVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLL 210

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +EM    ISP++             G    A  L   M+ +G+ P+ +  +TL D
Sbjct: 211 QEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +I G  +  +  EA +L+E++    + P+++T++ +I+  CK+ R+D+A
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
           T MF  M  K    N+VT++ LI GY K+  +    +++ EM    I  N          
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G    ++ ++  M+ +G+ PD + +  +
Sbjct: 418 FRKVGNINGSLDIFQEMISSGVYPDTITIRNM 449



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 23/183 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--- 58
           L+KE  L++A  L  ++   G+ P+++T NT++ G C   +L +A+++F+ +    +   
Sbjct: 232 LVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDID 291

Query: 59  --------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
                   +P+  T+ ILI     EG+  +A  ++ +M  +G   + VTYS +I+G  K 
Sbjct: 292 ATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQ 351

Query: 111 QNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLL 158
             +  A  +++ M   + SPNI            AG   + ++L+  M R GI+ + +  
Sbjct: 352 SRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITY 411

Query: 159 STL 161
            TL
Sbjct: 412 ITL 414



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   P+I+T+NT+I GYC    +D+ ++LF ++    +  N
Sbjct: 348 LCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K G ++ +  +F +M+  G   + +T   ++ G +  + +K A  + E
Sbjct: 408 AITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLE 467

Query: 122 EM 123
           E+
Sbjct: 468 EL 469



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 93/185 (50%), Gaps = 30/185 (16%)

Query: 10  AALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +AL L  ++ +   ++PD++ Y+ II G     R  +A  LF ++    + P+ +T++ +
Sbjct: 134 SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ FC  G+  +A  +  +ML +    +VVT+S LI+   K  ++ SA D+ +EM  + +
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 129 SPNI------------AGRPTEAMQLYDSMLR-----------NGIMPDGLLLSTLADYN 165
            PN+            +G+  +A++++ +M +           NG+ PD      +  YN
Sbjct: 254 CPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPD------VQTYN 307

Query: 166 LQSSG 170
           +  SG
Sbjct: 308 ILISG 312



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           +Q+  +  +F ILI  FC   ++  A   F K+ + G    +VT++ L+ G      +  
Sbjct: 9   LQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSE 68

Query: 116 AFDVYEEMCENNISPNIA--------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           A D++ +MC+ N+             GR  EA+ L D M+ +G+ P+ +   T+ D
Sbjct: 69  ALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124


>gi|219885451|gb|ACL53100.1| unknown [Zea mays]
          Length = 437

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+++   +   G EP I TYN+++ G C + RL+EA++L +KL    L P+
Sbjct: 101 LCKRGRVTKAMEVLDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPD 160

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTI++D FCK GR ++AT +F   +  G      TY+ L++G+ K  N   AF +  
Sbjct: 161 IYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLM 220

Query: 122 EMCENNISPNI---------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           EMC NN +  +               AG  + A Q Y  M R G   DG  L TLA
Sbjct: 221 EMCGNNDAACLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLA 276



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 12/143 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + PD  ++ T +   C     DEA    +++     +P+  TF+ ++   CK GR+  A 
Sbjct: 52  VAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAM 111

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +   M   G +  + TY+ L+ G      ++ A ++ +++ ++ ++P+I          
Sbjct: 112 EVLDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGF 171

Query: 133 --AGRPTEAMQLYDSMLRNGIMP 153
              GR  EA  ++   +  G+ P
Sbjct: 172 CKVGRTEEATAIFHDAIGMGLSP 194


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A   + ++  + + P ++TYNT+ICG C + +L +A+ L  K+    + P   TF+I
Sbjct: 225 VNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSI 284

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DAFCKEG++ +A  +F  M++K  K N+VTY+ L++GY     +  A  ++  M +  
Sbjct: 285 LVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIG 344

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++P++                 EAM+L++ M    I PD +  ++L D
Sbjct: 345 VAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLID 392



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 92/155 (59%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +F  +   G+ PD+ +Y+ +I G+C +  +DEA++LFE++ C Q+ P+ +T+  
Sbjct: 330 VNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNS 389

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+  A  +  +M ++G   N++TY+ L+D   K+ ++  A ++  ++ ++N
Sbjct: 390 LIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHN 449

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I P++            +GR  +A ++++ +L NG
Sbjct: 450 IQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNG 484



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 66/108 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  ALKL G++ DRG  P+IITYN+++   C  + +D+A++L  KL    ++P+
Sbjct: 394 LCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPS 453

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
             T+ ILI+  CK GR+ DA  +F  +L  G   +V TY+ +I G+ K
Sbjct: 454 VCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCK 501



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   +  +F  +  +G EPD IT  T+I G C    + +A+   +K+  +  + N +++ 
Sbjct: 119 HNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYR 178

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK G+   A  M  ++  K  + +VV Y+ +IDG  K + +  AFD Y EM   
Sbjct: 179 TLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAK 238

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P +             G+  +A+ L   M+   I P     S L D
Sbjct: 239 RICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVD 287



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D A++L  +L D  ++P + TYN +I G C   RL +A ++FE +       +
Sbjct: 429 LCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNID 488

Query: 62  SITFTILIDAFCKEG 76
             T+  +I  FCK+G
Sbjct: 489 VYTYNTMIKGFCKKG 503



 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 49/106 (46%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  +   P II +  I+      N     V L  ++    +  N +T +ILI+ F + G 
Sbjct: 60  LHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGH 119

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
              +  +FS +L+KG + + +T + LI G     ++  A   ++++
Sbjct: 120 NSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKV 165


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE + DDA  +F +ML KG   N V ++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLID 325



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE   D A +LF ++  +GL P+ + + T+I G+C   R+D A+++++++    L P+ I
Sbjct: 224 KESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLI 283

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++  AF+  + M
Sbjct: 284 TYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRM 343

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
            + N   +              GR  +A ++   ML  G+ PD 
Sbjct: 344 IQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDA 387



 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKI 318

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG +D A     +M+++  + + V Y+ LI G         A  +  EM
Sbjct: 319 TYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREM 378

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
               + P+              G   +  +L   M R+G +P      ++  YN+  +G
Sbjct: 379 LSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP------SVVTYNVLMNG 431



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++     + +
Sbjct: 292 LCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 XVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K      A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 237 EMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 96/167 (57%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+   G  PD+ITY T+I G+C    +DEAV L + ++    KPN++++TI
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C  GR  DA  + S+M+++G   N VT++ LI+   K   ++ A ++ ++M  N 
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  GI P+ ++ S++A
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + KE HL+ A ++  ++   GL+P+++ YNT++ G CS  R  EA +L  ++       +
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF IL+D FC+ G +D    +  +ML  G   +V+TY+ +I+G+ K   +  A  + +
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M      PN             AGR  +A +L   M++ G  P+ +  +TL ++
Sbjct: 416 SMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A+ L   ++  G +P+ ++Y  ++ G CS  R  +A +L  ++      PN +
Sbjct: 403 KEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPV 462

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI+  CK+G ++ A  +  +ML  G   ++++YS +IDG  K+   + A ++   M
Sbjct: 463 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               ISPN              GR  + +Q++D++    I  D +L + +
Sbjct: 523 VNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  +L   G E DI++YN ++ G C   R  +  +L +++  V   PN +TF  
Sbjct: 197 VDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNT 256

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G  +    + ++M E G   ++  Y+ +IDG  K  +++ A ++   M    
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           + PN+            A R  EA +L   M +     D +  + L D+  Q+
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQN 369



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + +EA++L   +    + PN
Sbjct: 471 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  +EGR++    MF  + +   +++ V Y+ +I    K      A D + 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 122 EMCENNISPN 131
            M  N   PN
Sbjct: 591 YMVSNGCMPN 600



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  +++ +G  P    Y+ I+   C       +V++ E +       ++    ++++
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLN 189

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C++G +D+A  +  K+   G +A++V+Y+ ++ G   ++      ++ +EM   + +P
Sbjct: 190 AICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAP 249

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI             G      ++   M  +G  PD  + +T+ D
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIID 294



 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++ YN ++ GYC   R  +          V + PN+ TF  ++   C  GR+ DA  +  
Sbjct: 79  VVAYNAMVAGYC---RAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +M  KG       Y  +++   +S   +++  V E M
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM 172



 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P+  T+  ++ G C+  R+ +A+++ ++++     P    + ++++A C+ G   ++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM----CENNI-SPN------ 131
            +   M  KG   +    + +++   +   +  A  +  ++    CE +I S N      
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +A R  +  +L D M+R    P+ +  +TL  Y
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L+ ++  + + P+++T+N++I G+C + +L EAV L  +++   + PN  TF ILID
Sbjct: 213 AYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILID 272

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKEG +  AT + S M+++G + NVVTY+ L+DGYF  + +  A  V+  +    ++P
Sbjct: 273 GLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTP 332

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+                 EA++L+  M    + P+ +  S+L D
Sbjct: 333 NVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLID 377



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 90/154 (58%), Gaps = 6/154 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +F  ++ RG+ P++ +Y+ +I G C    +DEAV+LF+++    + PN
Sbjct: 311 LVKE--VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPN 368

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T++ LID  CK GR+ D   +  ++  +G  AN++TY+ L++G  K+  +  A  +  
Sbjct: 369 TVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLT 428

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDG 155
           +M +  I P+++   T    L D + +NG + D 
Sbjct: 429 KMKDEGIQPDMSTYTT----LVDGLCKNGRLKDA 458



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  +G+EP+++TY +++ GY  +  +++A  +F  ++   + PN
Sbjct: 274 LCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPN 333

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +++++I+  CK   +D+A  +F +M  K    N VTYS LIDG  KS  +   +D+ +
Sbjct: 334 VHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLID 393

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+       NI              +  +A+ L   M   GI PD    +TL D
Sbjct: 394 EINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVD 447



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++ D G++PD+ TY T++ G C   RL +A ++++ L C     N
Sbjct: 414 LCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLN 473

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T++I+  CKEG  D+A  + S+M + G   + VTY  LI   FK+     A  +  
Sbjct: 474 IRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLR 533

Query: 122 EM 123
           EM
Sbjct: 534 EM 535



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+KLF ++  + + P+ +TY+++I G C   R+ +   L +++       N
Sbjct: 344 LCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPAN 403

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L++  CK  ++D A  + +KM ++G + ++ TY+ L+DG  K+  +K A  +Y+
Sbjct: 404 IITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQ 463

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++       NI             G   EA+ L   M  NG MPD +   TL
Sbjct: 464 DLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETL 515



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K     AAL+L  ++    L  PD+I Y  II  +C    + +A  L+ ++   ++ P
Sbjct: 168 LCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYP 227

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +TF  LI  FC  G++ +A  + ++M       NV T++ LIDG  K   +K A  V 
Sbjct: 228 NVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVL 287

Query: 121 EEMCENNISPNIA 133
             M +  + PN+ 
Sbjct: 288 SVMIKQGVEPNVV 300



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 77/148 (52%), Gaps = 4/148 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A+ L  +++   + P++ T+N +I G C    + +A  +   +    ++PN +T+T
Sbjct: 244 QLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYT 303

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D +     ++ A  +F+ +  +G   NV +YS +I+G  K++ +  A  +++EM   
Sbjct: 304 SLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLK 363

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPD 154
           N++PN     +    L D + ++G + D
Sbjct: 364 NMTPNTVTYSS----LIDGLCKSGRISD 387



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 48/210 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   A+    Q+  +G++P++ T+N +I  +  L +L+ A  +  K+  +  +P+
Sbjct: 63  LVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPD 122

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG----------------------------- 92
           ++T   L+   C  G++ +A      ++ K                              
Sbjct: 123 TVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLR 182

Query: 93  -------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IA 133
                   + +V+ Y+ +ID + K + +  A+D+Y EM    I PN            I 
Sbjct: 183 KIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIV 242

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           G+  EA+ L + M  N + P+    + L D
Sbjct: 243 GQLKEAVGLLNEMSLNNVNPNVYTFNILID 272



 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 24/158 (15%)

Query: 7   HLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           +LD A+  F  +       P I  +N I+     +N    A+   +++    ++P   TF
Sbjct: 32  NLDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTF 91

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            ILI+ F    +++ A  M +K+L+ G + + VT + L+ G                +C 
Sbjct: 92  NILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRG----------------LCL 135

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N       G+  EA+  +D ++R     D +   TL +
Sbjct: 136 N-------GKVKEALNFHDHVIRKRFHLDQVSYGTLIN 166


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  L+E  +L + +    ++P+  
Sbjct: 152 KEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVY 211

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDD   +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 212 TYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 271

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 272 LSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 323



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D   +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 220 LCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 279

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+   
Sbjct: 280 LVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRX 339

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 340 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 384



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 76/129 (58%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   L+   +L   +   G++PD+ TY+ +I G C  +++D+  +LF+++    L PN 
Sbjct: 186 IKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNG 245

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK GR+D A  ++ +ML +    ++VTY+ LI G  K  ++K A D+ +E
Sbjct: 246 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDE 305

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 306 MSMKGLKPD 314



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD++TYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 257 KNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 316

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 317 TYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 376

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
               + P I             G      +L   M R+G +P      ++  YN+  +G
Sbjct: 377 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP------SVVTYNVLMNG 429



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +   ++    ++ +
Sbjct: 290 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLD 349

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 350 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMK 409

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 410 EMQRDGYVPSVV 421



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +C    +  A  +F+ +T   L+P+ ++F  L++ + K G +++ 
Sbjct: 135 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEX 194

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             +   M   G + +V TYS LI+G  K   M    ++++EM +  + PN          
Sbjct: 195 FRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDG 254

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 255 HCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTL 286


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF ++  +G+  +IITYN +I G+C+  R D+  +L   +   ++ PN
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF++LID+F KEG++ +A  +  +M+ +G   + +TY+ LIDG+ K  ++  A  + +
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 392

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      PNI            A R  + ++L+  M   G++ D +  +TL
Sbjct: 393 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 444



 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 76/132 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A +L  ++  RG+ PD ITY ++I G+C  N LD+A Q+ + +      PN
Sbjct: 343 FVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 402

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILI+ +CK  R+DD   +F KM  +G  A+ VTY+ LI G+ +   +  A ++++
Sbjct: 403 IRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQ 462

Query: 122 EMCENNISPNIA 133
           EM    + PNI 
Sbjct: 463 EMVSRKVPPNIV 474



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 91/162 (56%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HLD A ++   +  +G +P+I T+N +I GYC  NR+D+ ++LF K++   +  +++
Sbjct: 380 KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 439

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC+ G+++ A  +F +M+ +    N+VTY  L+DG   +   + A +++E++
Sbjct: 440 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            ++ +  +I            A +  +A  L+ S+   G+ P
Sbjct: 500 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 541



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL+L  ++ + G +PD+IT NT++ G C   +  EA+ L +K+     +PN++T
Sbjct: 171 EGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +++  CK G+   A  +  KM E+  K + V YS +IDG  K  ++ +AF+++ EM 
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 290

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
              I+ NI            AGR  +  +L   M++  I P+ +  S L D  ++    +
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 350

Query: 173 E 173
           E
Sbjct: 351 E 351



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 12/175 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  L+LF +++ RG+  D +TYNT+I G+C L +L+ A +LF+++   ++ PN +
Sbjct: 415 KANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIV 474

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+D  C  G  + A  +F K+ +   + ++  Y+ +I G   +  +  A+D++  +
Sbjct: 475 TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 534

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
               + P +             G  +EA  L+  M  +G  PDG   + L   +L
Sbjct: 535 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL 589



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 68/121 (56%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L  ++ +R ++ D + Y+ II G C    LD A  LF ++    +  N IT+ ILI 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIG 306

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC  GR DD   +   M+++    NVVT+S LID + K   ++ A ++++EM    I+P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 366

Query: 131 N 131
           +
Sbjct: 367 D 367



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL++F ++    +E DI  YN II G C+ +++D+A  LF  L    +KP   T+ I+
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           I   CK+G + +A ++F KM E G   +  TY+ LI  +    +   +  + EE+
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 604



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L L  Q+  +G+  ++ T + +I  +C   +L  A     K+  +  +PN+ITF+ L
Sbjct: 105 DLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTL 164

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C EGR+ +A  +  +M+E G K +++T + L++G   S     A  + ++M E   
Sbjct: 165 INGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN             +G+   AM+L   M    I  D +  S + D
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF  +      P +I ++ +        + D  + L +++    +  N  T +I+
Sbjct: 70  DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ FC+  ++  A     K+++ G + N +T+S LI+G      +  A ++ + M E   
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGL 156
            P+            ++G+  EAM L D M+  G  P+ +
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAV 229



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  LF  L  +G++P + TYN +I G C    L EA  LF K+      P+  T+ I
Sbjct: 524 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNI 583

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           LI A   +G    +  +  ++   G   +  T   +ID     +  KS  D+
Sbjct: 584 LIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDM 635


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 143 KDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVY 202

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE  MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 203 TYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQM 262

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P+J             G   +A  L D M   G+ PD    +TL D
Sbjct: 263 LSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLID 314



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 211 LCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPD 270

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L+   CK+G ++ A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 271 JITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRK 330

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 331 RMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPD 375



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  L  ++  +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 281 LCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD 340

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 341 DVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLK 400

Query: 122 EMCENNISPNIA 133
           EM  N   P + 
Sbjct: 401 EMQRNGHVPXVV 412



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 106 LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPS 165

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 166 VVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFD 225

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 226 EMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLV-YGLCKK 284

Query: 170 G--SQEH 174
           G  +Q H
Sbjct: 285 GDLNQAH 291



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LDAA +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 318 KEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTG 377

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G    VVTY+ L++G
Sbjct: 378 TYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 94/162 (58%), Gaps = 9/162 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A  L+ ++  + + P ++TYNT+ICG C + +L +A+ L  K+    + P 
Sbjct: 162 LCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPT 221

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF+ILIDAFCKEG+M +A  +F+ M+++  K N+VTY+ L+DG+     +K A  ++ 
Sbjct: 222 VYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFN 281

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +            EAM L++ M    I PD ++ ++L D
Sbjct: 282 TMIK---------MVDEAMNLFEEMHFKQIYPDMVIYNSLID 314



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 68/121 (56%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK  G++  RG  PDI TYN+++   C    +D+A++L  KL    ++P+  T+ ILI+
Sbjct: 325 ALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILIN 384

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+ DA  +F  +L KG   +V TY+ +I G+ K         +  +M ++  SP
Sbjct: 385 GLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSP 444

Query: 131 N 131
           +
Sbjct: 445 D 445



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 9/155 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  + + PD++ YN++I G C   R   A++   ++      P+  T+  
Sbjct: 287 VDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNS 346

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA CK   +D A  + +K+ ++G + +V TY+ LI+G  KS  +K A  V+E++    
Sbjct: 347 LLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLL--- 403

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
               + G  T+    Y++M++ G    GL   TLA
Sbjct: 404 ----VKGYNTDVYT-YNAMIK-GFCKKGLFDETLA 432



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 26/177 (14%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN--------------RLDEAVQL 49
           KE  +  A  +F  +    ++P+I+TYN+++ G+  +N               +DEA+ L
Sbjct: 234 KEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNL 293

Query: 50  FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           FE++   Q+ P+ + +  LID  CK GR   A     +M  +G   ++ TY+ L+D   K
Sbjct: 294 FEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCK 353

Query: 110 SQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + ++  A ++  ++ +  I P++            +GR  +A ++++ +L  G   D
Sbjct: 354 NYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTD 410



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +  +F  +  +G   D IT+ T+I G C    + +A+   +K+     K N +++  LI+
Sbjct: 66  SFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLIN 125

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+   A     ++  K  + +VV Y+ +IDG  K + +  AF++Y EM    I P
Sbjct: 126 GLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICP 185

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++    T            +A+ L   M+   I P     S L D
Sbjct: 186 SVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILID 230



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H    + L  Q+   GL  +++T + +I  Y  L +   +  +F  +       +
Sbjct: 22  LVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVFANILKKGYGSD 81

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITFT LI   C +G +  A     K++ +G K N V+Y  LI+G  K    ++A +   
Sbjct: 82  AITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLR 141

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            +    + P++    T            +A  LY  M+   I P  +  +TL
Sbjct: 142 RIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTL 193



 Score = 42.4 bits (98), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A K+F  L  +G   D+ TYN +I G+C     DE + +  K+      P+
Sbjct: 386 LCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPD 445

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +    I+I +   +G  D A   F +M+ +G
Sbjct: 446 AKNCEIIIRSLFDKGENDKAG-KFREMIVRG 475



 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  +   P I  +  I+      N     V L  ++    L  N +T +ILI+ + + G+
Sbjct: 3   LHHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQ 62

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------ 131
              +  +F+ +L+KG  ++ +T++ LI G      +  A   ++++       N      
Sbjct: 63  NALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGT 122

Query: 132 ------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   G+   A++    +    + PD ++ +T+ D
Sbjct: 123 LINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIID 160


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY     LDE   L   +    ++P+  
Sbjct: 135 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVY 194

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 195 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              ++SP++             G   +A  L D M   G+ PD +  +TL
Sbjct: 255 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 304



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 75/129 (58%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+   LD    L   +   G++PD+ TY+ +I G C  +++D+A +LF+++    L PN 
Sbjct: 169 IRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNG 228

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK GR+D A  ++ +ML +    +++TY+ LI G  K  ++K A  + +E
Sbjct: 229 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDE 288

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 289 MSVKGLKPD 297



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 203 LCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LI+G  K  ++ SAF+  +
Sbjct: 263 LITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRK 322

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
            M + NI  +              GR  +A ++   ML  G+ PD 
Sbjct: 323 RMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDA 368



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 273 LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLD 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 333 EVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLK 392

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 393 EMQRDGHVPSVV 404



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 158 VVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 217

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   + PD +  +TL
Sbjct: 218 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 269



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 310 KEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDAR 369

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK G +   + +  +M   G   +VVTY+ L++G
Sbjct: 370 TYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 96/167 (57%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+   G  PD+ITY T+I G+C    +DEAV L + ++    KPN++++TI
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C  GR  DA  + S+M+++G   N VT++ LI+   K   ++ A ++ ++M  N 
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  GI P+ ++ S++A
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + KE HL+ A ++  ++   GL+P+++ YNT++ G CS  R  EA +L  ++       +
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF IL+D FC+ G +D    +  +ML  G   +V+TY+ +I+G+ K   +  A  + +
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M      PN             AGR  +A +L   M++ G  P+ +  +TL ++
Sbjct: 416 SMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A+ L   ++  G +P+ ++Y  ++ G CS  R  +A +L  ++      PN +
Sbjct: 403 KEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPV 462

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI+  CK+G ++ A  +  +ML  G   ++++YS +IDG  K+   + A ++   M
Sbjct: 463 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               ISPN              GR  + +Q++D++    I  D +L + +
Sbjct: 523 VNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  +L   G E DI++YN ++ G C   R  +  +L +++  V   PN +TF  
Sbjct: 197 VDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNT 256

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G  +    + ++M E G   ++  Y+ +IDG  K  +++ A ++   M    
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           + PN+            A R  EA +L   M +     D +  + L D+  Q+ 
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + +EA++L   +    + PN
Sbjct: 471 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  +EGR++    MF  + +   +++ V Y+ +I    K      A D + 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 122 EMCENNISPN 131
            M  N   PN
Sbjct: 591 YMVSNGCMPN 600



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 60/116 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL+L   + ++G+ P+ I Y++I C      R+++ +Q+F+ +    ++ +++ +  +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           I + CK    D A   F+ M+  G   N  TY+ LI G       K A ++  E+C
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELC 628



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++  +++F  + D  +  D + YN +I   C     D A+  F  +      PN
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 600

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+T+LI     EG   +A  + S++  +G
Sbjct: 601 ESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  +++ +G  P    Y+ I+   C       +V++ E +       ++    ++++
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLN 189

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C++G +D+A  +  K+   G +A++V+Y+ ++ G   ++      ++ +EM   + +P
Sbjct: 190 AICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAP 249

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI             G      ++   M  +G  PD  + +T+ D
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIID 294



 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++ YN ++ GYC   R  +          V + PN+ TF  ++   C  GR+ DA  +  
Sbjct: 79  VVAYNAMVAGYC---RAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +M  KG       Y  +++   +S   +++  V E M
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM 172



 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P+  T+  ++ G C+  R+ +A+++ ++++     P    + ++++A C+ G   ++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM----CENNI-SPN------ 131
            +   M  KG   +    + +++   +   +  A  +  ++    CE +I S N      
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +A R  +  +L D M+R    P+ +  +TL  Y
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 96/167 (57%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+   G  PD+ITY T+I G+C    +DEAV L + ++    KPN++++TI
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C  GR  DA  + S+M+++G   N VT++ LI+   K   ++ A ++ ++M  N 
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 491

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  GI P+ ++ S++A
Sbjct: 492 CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIA 538



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + KE HL+ A ++  ++   GL+P+++ YNT++ G CS  R  EA +L  ++       +
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF IL+D FC+ G +D    +  +ML  G   +V+TY+ +I+G+ K   +  A  + +
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M      PN             AGR  +A +L   M++ G  P+ +  +TL ++
Sbjct: 416 SMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A+ L   ++  G +P+ ++Y  ++ G CS  R  +A +L  ++      PN +
Sbjct: 403 KEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPV 462

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI+  CK+G ++ A  +  +ML  G   ++++YS +IDG  K+   + A ++   M
Sbjct: 463 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               ISPN              GR  + +Q++D++    I  D +L + +
Sbjct: 523 VNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  +L   G E DI++YN ++ G C   R  +  +L +++  V   PN +TF  
Sbjct: 197 VDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNT 256

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G  +    + ++M E G   ++  Y+ +IDG  K  +++ A ++   M    
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYG 316

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           + PN+            A R  EA +L   M +     D +  + L D+  Q+ 
Sbjct: 317 LKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + +EA++L   +    + PN
Sbjct: 471 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  +EGR++    MF  + +   +++ V Y+ +I    K      A D + 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 122 EMCENNISPN 131
            M  N   PN
Sbjct: 591 YMVSNGCMPN 600



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 60/116 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL+L   + ++G+ P+ I Y++I C      R+++ +Q+F+ +    ++ +++ +  +
Sbjct: 513 EEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAV 572

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           I + CK    D A   F+ M+  G   N  TY+ LI G       K A ++  E+C
Sbjct: 573 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELC 628



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++  +++F  + D  +  D + YN +I   C     D A+  F  +      PN
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 600

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+T+LI     EG   +A  + S++  +G
Sbjct: 601 ESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  +++ +G  P    Y+ I+   C       +V++ E +       ++    ++++
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLN 189

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C++G +D+A  +  K+   G +A++V+Y+ ++ G   ++      ++ +EM   + +P
Sbjct: 190 AICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAP 249

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI             G      ++   M  +G  PD  + +T+ D
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIID 294



 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++ YN ++ GYC   R  +          V + PN+ TF  ++   C  GR+ DA  +  
Sbjct: 79  VVAYNAMVAGYC---RAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +M  KG       Y  +++   +S   +++  V E M
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAM 172



 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P+  T+  ++ G C+  R+ +A+++ ++++     P    + ++++A C+ G   ++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM----CENNI-SPN------ 131
            +   M  KG   +    + +++   +   +  A  +  ++    CE +I S N      
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +A R  +  +L D M+R    P+ +  +TL  Y
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD AL   G++T+ G++  +  Y+++I G+C L +L  A  LF+++    LKPN +
Sbjct: 402 KRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVV 461

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI  +CKEG + +A  ++ +M  KG   N  T++ LI G   +  M  A  ++ EM
Sbjct: 462 IYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEM 521

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            E N+ PN              G    A +L D M+  G++PD
Sbjct: 522 VEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD 564



 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ ++ +A  L  ++   G+ P +  YN +I   C   +LDEA  LF  +    L PN
Sbjct: 330 LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPN 389

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ILID+FCK G++D A     KM E G KA V  YS LI G+ K   +++A  +++
Sbjct: 390 DVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFD 449

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  N + PN+             G    A +LY  M   GI P+    + L
Sbjct: 450 EMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 19/177 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---- 59
           KE +   A +L  ++ ++GL PD  TY  +I G CS  R+ EA +    L   Q K    
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEI 601

Query: 60  ----PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
               PN +T+T LI+  CK G MD A ++  +ML      N  TY+C +D      N++ 
Sbjct: 602 EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEK 661

Query: 116 AFDVYEEMCE----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           A  +++ + E    N ++ NI        GR  EA ++  +M+ +GI PD +  ST+
Sbjct: 662 AIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTI 718



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A +L+ ++T +G+ P+  T+  +I G C  NR+ EA +LF ++    + PN +
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEV 531

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+ +LI+  CKEG    A  +  +M+EKG   +  TY  LI G
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISG 574



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E +++ A++L   L + G   + +TYN +I G+C L R+ EA ++   +    + P+
Sbjct: 653 LTSEGNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 711

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I+++ +I  +C+ G + +A  ++  ML +G   + V Y+ LI G   +  +  AF++ +
Sbjct: 712 CISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRD 771

Query: 122 EMCENNISPNIA 133
           +M    + PN A
Sbjct: 772 DMMRRGVKPNRA 783



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++ G++   G +  + TYN  I G C   R+ EAV++   L+   L+ +  T+  L+ 
Sbjct: 234 AREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVL 293

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK    +    M ++M+E G   +    S L+DG  K  N+ SAFD+  ++ +  ++P
Sbjct: 294 GLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAP 353

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G+  EA  L+++M   G+ P+ +  S L D
Sbjct: 354 SLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILID 398



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            +A  ++  ++ + G  P     + ++ G      +  A  L  K+    + P+   +  
Sbjct: 301 FEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNA 360

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI++ CK+G++D+A  +F+ M  KG   N VTYS LID + K   +  A     +M E  
Sbjct: 361 LINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVG 420

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I   +             G+   A  L+D M+ NG+ P+ ++ ++L
Sbjct: 421 IKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSL 466



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A ++   + D G+ PD I+Y+TII  YC    L EA++L+E +    + P+++ + 
Sbjct: 692 RIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYN 751

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            LI   C  G +  A  +   M+ +G K N  TY+ LI G     ++ S  D +
Sbjct: 752 FLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYF 805



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+KL+  + +RG+ PD + YN +I G C    L +A +L + +    +KPN  T+  
Sbjct: 728 LKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNS 787

Query: 68  LIDAFCKEGRMDDATMMFS 86
           LI   C    +      FS
Sbjct: 788 LIHGTCLMSSVSSTADYFS 806



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D G+ P I T + ++ G   + +   A+ LF+++    L+P+   +T ++ + C+   
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
              A  +  +M   G   +V TY+  I G  K+Q +  A ++   +    +  ++    T
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 138 EAM------------QLYDSMLRNGIMPDGLLLSTLAD 163
             +            ++ + M+  G +P    +S L D
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVD 328


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD AL   G++T+ G++  +  Y+++I G+C L +L  A  LF+++    LKPN +
Sbjct: 402 KRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVV 461

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI  +CKEG + +A  ++ +M  KG   N  T++ LI G   +  M  A  ++ EM
Sbjct: 462 IYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEM 521

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            E N+ PN              G    A +L D M+  G++PD
Sbjct: 522 VEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD 564



 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ ++ +A  L  ++   G+ P +  YN +I   C   +LDEA  LF  +    L PN
Sbjct: 330 LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPN 389

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ILID+FCK G++D A     KM E G KA V  YS LI G+ K   +++A  +++
Sbjct: 390 DVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFD 449

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  N + PN+             G    A +LY  M   GI P+    + L
Sbjct: 450 EMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   A +L  ++ ++GL PD  TY  +I G CS  R+ EA +    L   Q K N +
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEM 601

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F+ L+  +CKEGR+DDA     +ML +G   ++V YS LI G  + Q+ +S  D+ ++M
Sbjct: 602 CFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQM 661

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + P+             AG    A  L+D M+  G +P+ +  + L +
Sbjct: 662 HDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALIN 713



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A +L+ ++T +G+ P+  T+  +I G C  NR+ EA +LF ++    + PN +
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEV 531

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV---- 119
           T+ +LI+  CKEG    A  +  +M+EKG   +  TY  LI G   +  +  A +     
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDL 591

Query: 120 ------YEEMCENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   EMC + +       GR  +A+     ML  G+  D +  S L
Sbjct: 592 QGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVL 641



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           + L  Q+ D+GL PD + Y T+I        L  A  L++ +      PN +T+T LI+ 
Sbjct: 655 IDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALING 714

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----NN 127
            CK G MD A ++  +ML      N  TY+C +D      N++ A  +++ + E    N 
Sbjct: 715 LCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANT 774

Query: 128 ISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++ NI        GR  EA ++  +M+ +GI PD +  ST+
Sbjct: 775 VTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTI 815



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 46/197 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL---------- 53
           K  +L  A  L+  +   G  P+++TY  +I G C +  +D+A  L  ++          
Sbjct: 682 KAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQN 741

Query: 54  ----------------TCVQLK--------PNSITFTILIDAFCKEGRMDDATMMFSKML 89
                             +QL          N++T+ ILI  FCK GR+ +A  +   M+
Sbjct: 742 TYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMI 801

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPT 137
           + G   + ++YS +I  Y +  ++K A  ++E M    ++P+            + G  T
Sbjct: 802 DSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELT 861

Query: 138 EAMQLYDSMLRNGIMPD 154
           +A +L D M+R G+ P+
Sbjct: 862 KAFELRDDMMRRGVKPN 878



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E +++ A++L   L + G   + +TYN +I G+C L R+ EA ++   +    + P+
Sbjct: 750 LTSEGNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 808

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I+++ +I  +C+ G + +A  ++  ML +G   + V Y+ LI G   +  +  AF++ +
Sbjct: 809 CISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRD 868

Query: 122 EMCENNISPNIA 133
           +M    + PN A
Sbjct: 869 DMMRRGVKPNRA 880



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++ G++   G +  + TYN  I G C   R+ EAV++   L+   L+ +  T+  L+ 
Sbjct: 234 AREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVL 293

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK    +    M ++M+E G   +    S L+DG  K  N+ SAFD+  ++ +  ++P
Sbjct: 294 GLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAP 353

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G+  EA  L+++M   G+ P+ +  S L D
Sbjct: 354 SLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILID 398



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    +A  ++  ++ + G  P     + ++ G      +  A  L  K+    + P+
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPS 354

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI++ CK+G++D+A  +F+ M  KG   N VTYS LID + K   +  A     
Sbjct: 355 LFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLG 414

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E  I   +             G+   A  L+D M+ NG+ P+ ++ ++L
Sbjct: 415 KMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSL 466



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A ++   + D G+ PD I+Y+TII  YC    L EA++L+E +    + P+++ + 
Sbjct: 789 RIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYN 848

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            LI   C  G +  A  +   M+ +G K N  TY+ LI G
Sbjct: 849 FLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 19/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD AL    ++  RG+  D++ Y+ +I G          + L +++    L+P+++
Sbjct: 612 KEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNV 671

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +IDA  K G +  A  ++  M+ +G   NVVTY+ LI+G  K   M  A  +  EM
Sbjct: 672 LYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREM 731

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             +N  PN              G   +A+QL+D +L      +G L +T+  YN+   G
Sbjct: 732 LASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL------EGFLANTVT-YNILIRG 783



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D G+ P I T + ++ G   + +   A+ LF+++    L+P+   +T ++ + C+   
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
              A  +  +M   G   +V TY+  I G  K+Q +  A ++   +    +  ++    T
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 138 EAM------------QLYDSMLRNGIMPDGLLLSTLAD 163
             +            ++ + M+  G +P    +S L D
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVD 328


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    + P+  
Sbjct: 151 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVY 210

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y+ M
Sbjct: 211 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRM 270

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 271 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 322



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 219 LCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPD 278

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 279 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRK 338

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 339 RMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPD 383



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 289 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 348

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 349 DVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLK 408

Query: 122 EMCENNISPNIA 133
           EM  N  +P++ 
Sbjct: 409 EMQRNGHAPSVV 420



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 114 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 173

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G   +V TYS LI+G  K   M  A ++++
Sbjct: 174 VVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFD 233

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 234 EMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTL 285



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 326 KEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 385

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 386 TYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++ +
Sbjct: 146 FVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CK  +MDDA  +F +ML+ G   N VT++ LIDG+ K++ +  A ++Y+
Sbjct: 206 VYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYK 265

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           +M   ++SP++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G     ++L   M R+G MP
Sbjct: 373 LSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDGYMP 414



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + +  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYMPSVV 417



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +     +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG 134
             + + M   G +++V TYS LI+G  K+  M  A ++++EM +N + PN       I G
Sbjct: 191 FRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 135 -----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                R   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNRRVDVAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 48/96 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FC++G +     +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCEKGDVWTGLKLLKEMQRDGYMPSVVT 418


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   G+ PD+ TYN +I  Y  +  +D+A +LFE +     KP+ +T+  LI+   
Sbjct: 392 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 451

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K G +D+A M+F +M EKG   +V TYS LI+ + KS  ++ A  +++EM     +PNI 
Sbjct: 452 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 511

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  EA +LY++M + G++PD +  S L
Sbjct: 512 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 59/102 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF ++ ++G +PD+ TY+ +I  +   N+++ A  LF+++      PN
Sbjct: 450 LGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPN 509

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + G+ ++A  ++  M ++G   + +TYS L
Sbjct: 510 IVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 64/129 (49%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   +    +++ ++  +G + DI  YN ++        +D+A Q+FE +      P++
Sbjct: 139 LRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 198

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+TILI    K GR       F +M+ KG   N++ ++ +I+   K++ +     V  +
Sbjct: 199 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSK 258

Query: 123 MCENNISPN 131
           M EN+  PN
Sbjct: 259 MVENDCQPN 267



 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  +  +   PD  TY  +I       R  + +  F+++       N
Sbjct: 173 LAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLN 232

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I F  +I+A  K   +D    + SKM+E   + N  TYS  +D
Sbjct: 233 LIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLD 276



 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 47/111 (42%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL     TY  I+  +     + +  Q++E++     K +   + +L+DA  K G +D A
Sbjct: 123 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 182

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
             +F  M +K    +  TY+ LI    K+         ++EM       N+
Sbjct: 183 FQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNL 233



 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 44/187 (23%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI---- 67
           L  F ++  +G   ++I +NTII        +D+ + +  K+     +PN  T++I    
Sbjct: 218 LSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDI 277

Query: 68  ----------------------------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
                                       L+ + CK G   +A  +F +M     K +   
Sbjct: 278 LATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDA 337

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------GRPTEA---MQLYDSML 147
           +  +++    ++    A D+   M E  I  ++          G+  +      L+D M 
Sbjct: 338 FVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMK 397

Query: 148 RNGIMPD 154
            NGI+PD
Sbjct: 398 TNGIIPD 404


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   G+ PD+ TYN +I  Y  +  +D+A +LFE +     KP+ +T+  LI+   
Sbjct: 392 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 451

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K G +D+A M+F +M EKG   +V TYS LI+ + KS  ++ A  +++EM     +PNI 
Sbjct: 452 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 511

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  EA +LY++M + G++PD +  S L
Sbjct: 512 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 59/102 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF ++ ++G +PD+ TY+ +I  +   N+++ A  LF+++      PN
Sbjct: 450 LGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPN 509

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + G+ ++A  ++  M ++G   + +TYS L
Sbjct: 510 IVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 64/129 (49%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   +    +++ ++  +G + DI  YN ++        +D+A Q+FE +      P++
Sbjct: 139 LRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 198

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+TILI    K GR       F +M+ KG   N++ ++ +I+   K++ +     V  +
Sbjct: 199 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSK 258

Query: 123 MCENNISPN 131
           M EN+  PN
Sbjct: 259 MVENDCQPN 267



 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  +  +   PD  TY  +I       R  + +  F+++       N
Sbjct: 173 LAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLN 232

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I F  +I+A  K   +D    + SKM+E   + N  TYS  +D
Sbjct: 233 LIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLD 276



 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 47/111 (42%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL     TY  I+  +     + +  Q++E++     K +   + +L+DA  K G +D A
Sbjct: 123 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 182

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
             +F  M +K    +  TY+ LI    K+         ++EM       N+
Sbjct: 183 FQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNL 233



 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 44/187 (23%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI---- 67
           L  F ++  +G   ++I +NTII        +D+ + +  K+     +PN  T++I    
Sbjct: 218 LSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDI 277

Query: 68  ----------------------------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
                                       L+ + CK G   +A  +F +M     K +   
Sbjct: 278 LATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDA 337

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------GRPTEA---MQLYDSML 147
           +  +++    ++    A D+   M E  I  ++          G+  +      L+D M 
Sbjct: 338 FVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMK 397

Query: 148 RNGIMPD 154
            NGI+PD
Sbjct: 398 TNGIIPD 404


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 26/189 (13%)

Query: 1   MLIK---ECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV--------- 47
           +LIK   +CH L  +L  FG+LT  G +PD++T+NT++ G C  +R+ EA+         
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 48  -QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             LF+++  + L P  ITF  LI+  C EGR+ +A  + +KM+ KG   +VVTY  +++G
Sbjct: 206 GSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 265

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             K  + KSA ++  +M E +I P++             G  ++A  L+  ML  GI P+
Sbjct: 266 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 325

Query: 155 GLLLSTLAD 163
               + + D
Sbjct: 326 VFTYNCMID 334



 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++  +GL  D++TY TI+ G C +     A+ L  K+    +KP+ + ++ +ID
Sbjct: 240 AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIID 299

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G   DA  +FS+MLEKG   NV TY+C+IDG+        A  +  +M E  I+P
Sbjct: 300 RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINP 359

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G+  EA +L D ML   I PD +  +++
Sbjct: 360 DVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 402



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ H   A  LF ++ ++G+ P++ TYN +I G+CS  R  +A +L   +   ++ P+
Sbjct: 301 LCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 360

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI A  KEG++ +A  +  +ML +    + VTY+ +I G+ K      A  +++
Sbjct: 361 VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFD 420

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP++            A R  E MQL   + R G++ +    +TL
Sbjct: 421 LMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 468



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+AA  LF ++   G+ PD IT N ++ G+C   +L+EA++LFE +   ++  +++ + 
Sbjct: 477 NLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYN 536

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I   CK  ++D+A  +F  +   G + +V TY+ +I G+     +  A  ++ +M +N
Sbjct: 537 IIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDN 596

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+             AG   ++++L   M  NG   D   +  +AD
Sbjct: 597 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 645



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  +++ RGL  +  TYNT+I G+C ++ L+ A  LF+++    + P++IT  I
Sbjct: 443 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 502

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  FC+  ++++A  +F  +       + V Y+ +I G  K   +  A+D++  +  + 
Sbjct: 503 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 562

Query: 128 ISPNIA----------GRP--TEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++           G+   ++A  L+  M  NG  PD    +TL
Sbjct: 563 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 608



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 22/179 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A  +F    D    PD++T+NTII  YC   R+DE +QL  +++   L  N+ 
Sbjct: 408 KHNRFDDAKHMF----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTT 463

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE-- 121
           T+  LI  FC+   ++ A  +F +M+  G   + +T + L+ G+ +++ ++ A +++E  
Sbjct: 464 TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVI 523

Query: 122 EMCE---NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +M +   + ++ NI         +  EA  L+ S+  +G+ PD      +  YN+  SG
Sbjct: 524 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD------VQTYNVMISG 576



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 16/166 (9%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL L  ++ +  ++PD++ Y+ II   C      +A  LF ++    + PN  T+  +I
Sbjct: 274 SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 333

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D FC  GR  DA  +   M+E+    +V+T++ LI    K   +  A  + +EM    I 
Sbjct: 334 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 393

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P+               R  +A  ++D M      PD +  +T+ D
Sbjct: 394 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIID 435



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  LF  L   G+EPD+ TYN +I G+C  + + +A  LF K+     +P++ 
Sbjct: 544 KGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNS 603

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+  LI    K G +D +  + S+M   G   +  T   + D
Sbjct: 604 TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 645



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 19/157 (12%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+  F  +         +  N +I  +  +NR D A+ L+ K+   ++  N  +F I
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-EN 126
           LI  FC   ++  +   F K+ + G + +VVT++ L+ G                +C E+
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHG----------------LCLED 190

Query: 127 NISPNIA--GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            IS  +A  G   E   L+D M+  G+ P  +  +TL
Sbjct: 191 RISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTL 227


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ H   A  LF ++ D+G+ P+++TYN +I G CS  +  +A QL   +    + P+
Sbjct: 90  LCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPD 149

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI+AF KEG++ +A  ++ +ML +    + +TY+ LIDG+ K   +  A  +++
Sbjct: 150 VVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFD 209

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SPN+            A R  + ++L   MLR G++PD +  +TL
Sbjct: 210 LMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTL 261



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A  L  ++ + G +P+ +TY TI+ G C +   D A+ L  K+    +K +
Sbjct: 20  LCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKAD 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T +ID  CK+G    A  +F++M +KG   NV+TY+C+IDG         A  +  
Sbjct: 80  VVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLR 139

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M E+N+ P++             G+ +EA +LY  ML   I PD +  ++L D
Sbjct: 140 DMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLID 193



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 73/122 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +  A +L+ ++  R + PD ITYN++I G+C  +RLD+A  +F+ +      PN
Sbjct: 160 FVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPN 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT   LI   C+  R+DD   +  +ML +G   + V+Y+ LI G+ ++ ++ +A D+++
Sbjct: 220 VITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQ 279

Query: 122 EM 123
           EM
Sbjct: 280 EM 281



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 12/156 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + ++G + D++ +NT++ G C   R+ EA  L +++     +PN +T+  +++  CK G 
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
            D A  +  KM E   KA+VV Y+ +ID   K  +   A +++ EM +  I PN+     
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   G+ T+A QL   M+ + + PD +  + L
Sbjct: 121 MIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNAL 156



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A  +F  +  +G  P++IT NT+I G C   R+D+ ++L  ++    L P+S+
Sbjct: 197 KHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSV 256

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEK 91
           ++  LI  FC+ G ++ A  +F +M+ +
Sbjct: 257 SYNTLIHGFCQAGDLNAAQDLFQEMISQ 284


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L  A  L+ ++   GL+PD ITY  +I  +C   RL EA  +F+ +    L P+
Sbjct: 522 LCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPS 581

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+T+ I A+C+ G +  A   F KMLE+G + N VTY+ LI    +      A+  + 
Sbjct: 582 AVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFH 641

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM E  +SPN              G   EA++LY  M ++GI PD
Sbjct: 642 EMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPD 686



 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + +  +++AA   F ++   GL PD+ITYN++I GYC    L EA+ LF  L    L P+
Sbjct: 347 MFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPS 406

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ IL+D +C+ G +++A     +M+E+G + +V TY+ L++G  K +N+    + ++
Sbjct: 407 VLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFD 466

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P+            I G  +EA QL + M+  GI  D +  +   D
Sbjct: 467 EMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLD 520



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  RG+  D +TYN  + G C    L +A  L+ K+    L+P+ IT+T LI 
Sbjct: 496 AFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIH 555

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C+ GR+ +A  +F  ML  G   + VTY+  I  Y +  N+ SA+  +++M E  + P
Sbjct: 556 AHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRP 615

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N              GR   A Q +  ML  G+ P+    + L D N +    +E
Sbjct: 616 NEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEE 670



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 14/157 (8%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            AL+L  ++ + G+ P ++TYNTII G      ++ A   F ++  + L P+ IT+  LI
Sbjct: 322 GALQL--EMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLI 379

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           + +CK G + +A  +F  +   G   +V+TY+ L+DGY +  +++ A    +EM E    
Sbjct: 380 NGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQ 439

Query: 130 PNIA--------GRPTEAM----QLYDSMLRNGIMPD 154
           P+++         R    +    + +D ML  G+ PD
Sbjct: 440 PDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPD 476



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 62/109 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +  +L +A   F ++ + G+ P+ +TYN +I   C + R + A Q F ++    L PN  
Sbjct: 594 RRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKY 653

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           T+T+LID  CKEG  ++A  ++S+M + G   +  T++ L  G+ + Q+
Sbjct: 654 TYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQS 702



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +   ++ ++G +PD+ TY  ++ G   +  L    + F+++    L+P+   +  
Sbjct: 423 LEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNT 482

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I A    G   +A  +   M+ +G  ++ VTY+  +DG  KS N+K A+ ++ +M  + 
Sbjct: 483 RISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDG 542

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           + P+              GR  EA  ++D ML +G+ P  +
Sbjct: 543 LQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAV 583



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 26/185 (14%)

Query: 2   LIKECHL-----------DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF 50
            IKEC+L           D    ++ ++   G+EP I+TYNT++  +    R+D+A +L 
Sbjct: 195 FIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLL 254

Query: 51  EKLTCVQLK--PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            ++        P+ +T+ ++I+   ++G ++ A  +  +M     KA+  T++ LI GYF
Sbjct: 255 REMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAFTFNPLITGYF 313

Query: 109 KSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
              +++ A  +  EM    I P +            +G    A   +  M   G++PD +
Sbjct: 314 ARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLI 373

Query: 157 LLSTL 161
             ++L
Sbjct: 374 TYNSL 378



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 54/220 (24%)

Query: 2   LIKECHLDAALKLFGQLTDR--GLEPDIITYNTIICGYCSLNRLDEAVQLF--------- 50
             +E  +D A KL  ++  R  G  P  +TYN +I G      L++A QL          
Sbjct: 241 FFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKA 300

Query: 51  ------------------EKLTCVQLK-------PNSITFTILIDAFCKEGRMDDATMMF 85
                             EK   +QL+       P  +T+  +I    + G ++ A M F
Sbjct: 301 SAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKF 360

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
            +M   G   +++TY+ LI+GY K+ N+K A  ++ ++    ++P++             
Sbjct: 361 VEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRL 420

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           G   EA +    M+  G  PD      ++ Y +  +GS++
Sbjct: 421 GDLEEARRFKQEMVEQGCQPD------VSTYTILMNGSRK 454



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L  F ++   G+ P I   N ++       R D+   ++ ++  + ++P+ +T+  L+D+
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDS 240

Query: 72  FCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           F +EGR+D A  +  +M  +  G   + VTY+ +I+G  +   ++ A  + + M
Sbjct: 241 FFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM 294


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A KL+  +  R ++PDI TYN+++ G+C  +RLD+A Q+FE +      P+
Sbjct: 340 FVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R++D T +F +M  +G   + VTY+ LI G F   +  +A  V++
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 459

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M  + + P+I             G+  +A++++D M ++ I  D  + +T+
Sbjct: 460 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 511



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D AL L  ++    +E D++ +NTII   C    +D+A+ LF+++    ++PN
Sbjct: 235 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 294

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI   C  GR  DA+ + S M+EK    N+VT++ LID + K      A  +Y+
Sbjct: 295 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYD 354

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M + +I P+I              R  +A Q+++ M+     PD +  +TL
Sbjct: 355 DMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  RG +P+++TY  ++ G C     D A+ L  K+   +++ + + F  +ID
Sbjct: 209 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIID 268

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK   +DDA  +F +M  KG + NVVTYS LI           A  +  +M E  I+P
Sbjct: 269 SLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 328

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  EA +LYD M++  I PD    ++L +
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 373



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++  +G+ P+++TY+++I   CS  R  +A QL   +   ++ PN
Sbjct: 270 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN 329

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            +TF  LIDAF KEG                                   R+D A  MF 
Sbjct: 330 LVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFE 389

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT--------- 137
            M+ K    +VVTY+ LI G+ KS+ ++   +++ EM    +  +     T         
Sbjct: 390 FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 449

Query: 138 ---EAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A +++  M+ +G+ PD +  S L D
Sbjct: 450 DCDNAQKVFKQMVSDGVPPDIMTYSILLD 478



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G  PD IT+ T+I G    N+  EAV L +++     +PN 
Sbjct: 166 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 225

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+ ++++  CK G  D A  + +KM     +A+VV ++ +ID   K +++  A ++++E
Sbjct: 226 VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 285

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN+             GR ++A QL   M+   I P+ +  + L D
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 338



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F Q+   G+ PDI+TY+ ++ G C+  +L++A+++F+ +   ++K +   +T +
Sbjct: 452 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 511

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G++DD   +F  +  KG K NVVTY+ +I G    + ++ A+ + ++M E+  
Sbjct: 512 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 571

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            PN     T    L  + LR+G
Sbjct: 572 LPNSGTYNT----LIRAHLRDG 589



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 16/185 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   +  AL L G++   G EP I+T ++++ GYC   R+ +AV L +++  +  +P++I
Sbjct: 132 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI       +  +A  +  +M+++G + N+VTY  +++G  K  +   A ++  +M
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 251

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQ 167
               I  ++    T            +A+ L+  M   GI P+ +    L+S L  Y   
Sbjct: 252 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 311

Query: 168 SSGSQ 172
           S  SQ
Sbjct: 312 SDASQ 316



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + +  LD A+ LFG +      P I+ +N ++     + + D  + L EK+  +++    
Sbjct: 61  LHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGL 120

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ ILI+ FC+  ++  A  +  KM++ G + ++VT S L++GY   + +  A  + ++
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M E    P+            +  + +EA+ L D M++ G  P+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 224



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +LF +++ RGL  D +TY T+I G       D A ++F+++    + P+ +
Sbjct: 412 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 471

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  C  G+++ A  +F  M +   K ++  Y+ +I+G  K+  +   +D++  +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+    T            EA  L   M  +G +P+    +TL   +L+
Sbjct: 532 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR 587



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL++F  +    ++ DI  Y T+I G C   ++D+   LF  L+   +KPN +T+  
Sbjct: 486 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 545

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +I   C +  + +A  +  KM E GP  N  TY+ LI  + +  +  ++ ++  EM
Sbjct: 546 MISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TYN +I  +C  +++  A+ L  K+  +  +P+ +T + L++ +C   R+ DA  +  +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
           +E G + + +T++ LI G F       A  + + M +    PN+             G  
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             A+ L + M    I  D ++ +T+ D
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIID 268



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D    LF  L+ +G++P+++TYNT+I G CS   L EA  L +K+      PNS 
Sbjct: 517 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSG 576

Query: 64  TFTILIDAFCKEG 76
           T+  LI A  ++G
Sbjct: 577 TYNTLIRAHLRDG 589


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++  +G+  D++TYNT+I G+C + +L EA+ L  ++    + PN  T+ IL+D
Sbjct: 218 AYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CKEG++ +A  + + ML+   K +V+TYS L+DGYF    +K A  V+  M    ++P
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTP 337

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++                 EA+ L+  M +  ++P  +  S+L D
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 74/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +     L  ++ DRG   D+ITY+++I G C    LD A+ LF K+   +++PN
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTIL+D  CK GR+ DA  +F  +L KG   NV TY+ +I+G+ K   ++ A  +  
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLS 503

Query: 122 EMCENNISPN 131
           +M +N   PN
Sbjct: 504 KMEDNGCIPN 513



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  ++  G+ PD+ TY  +I G+C    +DEA+ LF+++    + P  +T++ LID
Sbjct: 323 AQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+     +  +M ++G  A+V+TYS LIDG  K+ ++  A  ++ +M +  I P
Sbjct: 383 GLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRP 442

Query: 131 NI------------AGRPTEAMQLYDSMLRNG 150
           NI             GR  +A +++  +L  G
Sbjct: 443 NIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +    ++PD+ITY+T++ GY  +  + +A  +F  ++ + + P+
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPD 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILI+ FCK   +D+A  +F +M +K     +VTYS LIDG  KS  +   +D+ +
Sbjct: 339 VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLID 398

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM +        G+P + +  Y S++ +G+  +G L   +A +N
Sbjct: 399 EMRDR-------GQPADVIT-YSSLI-DGLCKNGHLDRAIALFN 433



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL LF ++  + + P I+TY+++I G C   R+     L +++       + IT++ 
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSS 414

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G +D A  +F+KM ++  + N+ T++ L+DG  K   +K A +V++++    
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              N+             G   EA+ +   M  NG +P+     T+
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETI 520



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL    +L  +G + + ++Y T+I G C +     A++   K+     KP+ + + 
Sbjct: 144 QVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYN 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +IDA CK   + +A  +FS+M  KG  A+VVTY+ LI G+     +K A  +  EM   
Sbjct: 204 TIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLK 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I+PN+             G+  EA  +   ML+  + PD +  STL D
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 64/122 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ LF ++ D+ + P+I T+  ++ G C   RL +A ++F+ L       N
Sbjct: 419 LCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLN 478

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ++I+  CK+G +++A  M SKM + G   N  T+  +I   FK      A  +  
Sbjct: 479 VYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLR 538

Query: 122 EM 123
           +M
Sbjct: 539 QM 540



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   A+ L  +L  +G++PD+IT N +I  +C + ++     +  K+      P+++T  
Sbjct: 74  HYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLN 133

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C +G++  A     K+L +G + N V+Y+ LI+G  K  + ++A     ++   
Sbjct: 134 TLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGR 193

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              P++    T            EA  L+  M   GI  D +  +TL
Sbjct: 194 LTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTL 240



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+  F ++      P II +N I+  +  +     AV L  +L    ++P+ IT  
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+ FC  G++     + +K+L++G   + VT + LI G      +K A   ++++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 127 NISPN 131
               N
Sbjct: 159 GFQLN 163



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F  L  +G   ++ TYN +I G+C    L+EA+ +  K+      PN
Sbjct: 454 LCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 513

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           + TF  +I A  K+   D A  +  +M+ +G
Sbjct: 514 AFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
           S+  +D+AV  F ++ C++  P  I F  ++D+F K      A  +  ++  KG + +++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLI 95

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSM 146
           T + LI+ +     +   F V  ++ +    P+            + G+  +A+  +D +
Sbjct: 96  TLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKL 155

Query: 147 LRNGIMPDGLLLSTLAD 163
           L  G   + +  +TL +
Sbjct: 156 LAQGFQLNQVSYATLIN 172


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   G  PDI TYN +I  +  +  +DEA+ +FE+L     KP+ I++  LI+   
Sbjct: 464 LFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLG 523

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K G +D+A + F +M EKG   +VVTYS L++ + K++ ++ A+ ++EEM      PNI 
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                       GR  EA+ LY  M + G+ PD +  + L      S G   
Sbjct: 584 TYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVLERLQSVSHGKSR 635



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 73/124 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ +F +L     +PDII+YN++I        +DEA   F+++    L P+ +T++ 
Sbjct: 493 VDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYST 552

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ F K  R++ A  +F +ML KG + N+VTY+ L+D   K+     A D+Y +M +  
Sbjct: 553 LMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQG 612

Query: 128 ISPN 131
           ++P+
Sbjct: 613 LTPD 616



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 61/102 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ ++GL PD++TY+T++  +    R++ A  LFE++     +PN
Sbjct: 522 LGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPN 581

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   K GR  +A  ++SKM ++G   + +TY+ L
Sbjct: 582 IVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVL 623



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  ++ ++   G + DI  YN ++    +L + ++A Q+FE +     + +  T+TI+I 
Sbjct: 222 AFDVYCEIRRGGHKLDIFAYNMLLD---ALAKDEKACQVFEDMKKRHCRRDEYTYTIMIR 278

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              + G+ D+A  +F++M+ +G   NVV Y+ L+    K + +  A  V+  M E    P
Sbjct: 279 TMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRP 338

Query: 131 N 131
           N
Sbjct: 339 N 339



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+  A +LF  +    ++ +  +Y +++   C   +  EA+++  K+    +  +
Sbjct: 382 LSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTD 441

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  +  A  K  ++     +F KM + GP  ++ TY+ LI  + +   +  A +++E
Sbjct: 442 TMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFE 501

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+  ++  P+I             G   EA   +  M   G+ PD +  STL +
Sbjct: 502 ELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLME 555



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 78/168 (46%), Gaps = 21/168 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF ++   GL  +++ YNT++        +D+A+Q+F ++     +PN  T+++L
Sbjct: 287 DEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLL 346

Query: 69  IDAFCKEG---RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           ++    EG   R+D    +  + + +G       YS L+    K  ++  A  ++ +M  
Sbjct: 347 LNLLVAEGQLVRLDGVVEISKRYMTQG------IYSYLVRTLSKLGHVSEAHRLFCDMWS 400

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +                AG+  EA+++   +   G++ D ++ +T+
Sbjct: 401 FPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTV 448



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A ++F  +  R    D  TY  +I     + + DEAV LF ++    L  N + +  L
Sbjct: 252 EKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTL 311

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +    K   +D A  +FS+M+E G + N  TYS L++
Sbjct: 312 MQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLN 348



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 18/160 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD  +++  +   +G+      Y+ ++     L  + EA +LF  +    +K    ++ 
Sbjct: 358 RLDGVVEISKRYMTQGI------YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYM 411

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++++ C  G+  +A  M SK+ EKG   + + Y+ +     K + +    D++E+M ++
Sbjct: 412 SMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKD 471

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             SP+I             G   EA+ +++ + R+   PD
Sbjct: 472 GPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPD 511



 Score = 42.7 bits (99), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 26  DIITYNTIICGYCSLN---RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           D   YN II      N   R D    + + +    +  N  T  ILI  F   G  +D  
Sbjct: 132 DPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFF---GNTEDLQ 188

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           M    + +   K N  TY CL+  Y +S++   AFDVY E+
Sbjct: 189 MCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEI 229


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 12/154 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L AA+  F ++ D+GL+P +++Y ++I GYC+  +L EA +L+ ++T   + PN+ TFT
Sbjct: 451 NLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFT 510

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI A  +  RM DA  +F +MLE+    N VTY+ +I+G+ K  N   AF++  +M + 
Sbjct: 511 TLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQK 570

Query: 127 NISPNI------------AGRPTEAMQLYDSMLR 148
            + P+              GR  EA +  D + R
Sbjct: 571 GLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHR 604



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+   G++   G++  +  YN++I G+C L  L  AV  F+++    LKP  +++T 
Sbjct: 417 LDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTS 476

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C +G++ +A  ++ +M  KG   N  T++ LI   F++  M  AF +++EM E N
Sbjct: 477 LISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQN 536

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + PN              G   +A +L + M++ G++PD
Sbjct: 537 MMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPD 575



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 21/186 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   D A  LF ++ ++GL  + +TY+ +I  +C   +LD A+    K+    +K  
Sbjct: 376 LCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKIT 435

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI+  CK G +  A   F +M++KG K  VV+Y+ LI GY     +  AF +Y 
Sbjct: 436 VYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYH 495

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    I+PN             A R T+A +L+D ML   +MP+ +       YN+   
Sbjct: 496 EMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEV------TYNVMIE 549

Query: 170 GSQEHC 175
           G   HC
Sbjct: 550 G---HC 552



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++   G  P +  YN +I   C   + DEA  LF+++    L  N +T++ILID
Sbjct: 350 AFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILID 409

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +FC+ G++D A     KM+  G K  V  Y+ LI+G+ K  N+ +A   ++EM +  + P
Sbjct: 410 SFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKP 469

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +             G+  EA +LY  M   GI P+    +TL
Sbjct: 470 TVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTL 512



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 11/170 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IKE    A   L   + D+ L PD + Y ++I GY     + +A  +++ +      PN 
Sbjct: 657 IKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNI 716

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+T LI+  CK G MD A +++ +ML      N VTY C +D   +  +M+ A  ++ +
Sbjct: 717 VTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHND 776

Query: 123 MCE----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M +    N +S NI        GR  EA +L D M+ N I PD +  ST+
Sbjct: 777 MLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTI 826



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   A +L  Q+  +GL PD  TY  +I   CS  R+ EA +  + L     K N +
Sbjct: 553 KEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEM 612

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ L+  +CKEGR+ DA  +  +M+++G   ++V Y+ LIDG  K Q+  + F + + M
Sbjct: 613 CYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNM 672

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + P+             AG   +A  ++D M+  G  P+ +  +TL +
Sbjct: 673 HDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLIN 724



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A  ++  + D G  P+I+TY T+I   C    +D+A  L++++      PN +
Sbjct: 693 KAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHV 752

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   +D   +EG M+ A  + + ML KG  AN V+Y+ L+ G+ K   ++ A  + +EM
Sbjct: 753 TYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEM 811

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            +N I P+              G    A++ +D+ML  G+ PD L
Sbjct: 812 IDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTL 856



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++ A++L   +  +GL  + ++YN ++ G+C L R++EA +L +++    + P+
Sbjct: 761 LAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPD 819

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ +I   C+ G +D A   +  ML KG K + + Y+ LI G   +  +  AF++ +
Sbjct: 820 CITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRD 879

Query: 122 EMCENNISPNIA 133
           +M    + PN A
Sbjct: 880 DMIRRGVKPNQA 891



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D  L LFG++   G+ PDI  Y  +I  +C L    +A ++ +++    L  N
Sbjct: 203 LAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDL--N 260

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LI   CK  R+ +A  + + +++KG  A+ VTY  L+ G  K Q  +    V +
Sbjct: 261 VVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMD 320

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E    P  A            G+  +A  L + + + G MP   + + L +
Sbjct: 321 EMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALIN 374



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 19/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  AL +  ++  RG++ D++ Y  +I G            L + +   +L+P+ +
Sbjct: 623 KEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKV 682

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +ID + K G +  A  ++  M+++G   N+VTY+ LI+   K+  M  A  +++EM
Sbjct: 683 IYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEM 742

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             +N +PN              G   +A+QL++ ML+      GLL +T++ YN+   G
Sbjct: 743 LVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK------GLLANTVS-YNILVRG 794



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A KL  ++ D  + PD ITY+TII   C    LD A++ ++ +    LKP+++ +  
Sbjct: 801 VEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNF 860

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           LI   C  G +  A  +   M+ +G K N  T+  L  G
Sbjct: 861 LIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHG 899



 Score = 42.0 bits (97), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +  +LD A++ +  + ++GL+PD + YN +I G C    L +A +L + +    +KPN  
Sbjct: 832 RRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQA 891

Query: 64  T 64
           T
Sbjct: 892 T 892


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +  A +L   +   G+ PD + Y T+I G+C L  +  A +LF+++   ++ P
Sbjct: 321 LLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVP 380

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T +I   CK G+M +A  MF++ML KG + + VTY+ LIDGY K+  MK AF V+
Sbjct: 381 DIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVH 440

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +M +  ++PN+             G    A +L   M R G+ P+    +T+ +
Sbjct: 441 NQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVN 495



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 21/186 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L  +++ +GL+P++ TYNTI+ G C +  +++ V+L E++      P+
Sbjct: 462 LCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPD 521

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T L+DA+CK G M  A  +   ML K  +  +VT++ L++G+  S  ++    + E
Sbjct: 522 TITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIE 581

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M E  I PN            I        ++Y +M   G+MPD         YN+   
Sbjct: 582 WMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDS------NTYNILIK 635

Query: 170 GSQEHC 175
           G   HC
Sbjct: 636 G---HC 638



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F ++  +GLEPD +TY  +I GYC    + EA  +  ++    L PN +T+T L D
Sbjct: 401 AREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALAD 460

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G +D A  +  +M  KG + NV TY+ +++G  K  N++    + EEM      P
Sbjct: 461 GLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYP 520

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +              G   +A +L   ML   + P      TL  +N+  +G
Sbjct: 521 DTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQP------TLVTFNVLMNG 566



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   + ++ L+P ++T+N ++ G+C    L++  +L E +    + PN+ TF  L+ 
Sbjct: 541 AHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMK 600

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C +  M   T ++  M ++G   +  TY+ LI G+ K++NMK A+ +++EM E   S 
Sbjct: 601 QYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSV 660

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
             A             +  EA +L++ M ++G++ +  +     D N +    +
Sbjct: 661 TAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWE 714



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 17/173 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E H      L  Q+TDRG  PD+++Y  ++ GYC +  LD+ ++L ++L    LKP+ 
Sbjct: 258 VREAH-----NLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDE 312

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I   CK G + +A  +   M + G   + V Y+ +I G+ K  N+ +A  +++E
Sbjct: 313 YIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDE 372

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P+I            +G+  EA ++++ ML  G+ PD +  + L D
Sbjct: 373 MRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALID 425



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 65/121 (53%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+   +L   + ++G+ P+  T+N+++  YC  N +    ++++ +    + P+S T+ I
Sbjct: 573 LEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNI 632

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK   M +A  +  +M+EKG      TY  LI G++K +    A  ++EEM ++ 
Sbjct: 633 LIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHG 692

Query: 128 I 128
           +
Sbjct: 693 L 693



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ A  +++  + DRG+ PD  TYN +I G+C    + EA  L +++        + T+ 
Sbjct: 607 NMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYD 666

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LI  F K  +  +A  +F +M + G  A    Y   +D  ++  N    +++  E+C+
Sbjct: 667 ALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGN----WEITLELCD 721



 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGY-CSLNRLDEAVQLFEKLTCVQLK 59
           +L++   +  A KLF +L   G+   + + N  +    C+   +  AV++FE+   + + 
Sbjct: 180 VLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFPELGVC 239

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            N+++  I++   C+ G++ +A  +  +M ++G   +VV+Y  ++ GY +   +     +
Sbjct: 240 WNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKL 299

Query: 120 YEEMCENNISP------NIA------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +E+    + P      NI       G   EA QL   M + G+ PD ++ +T+
Sbjct: 300 VDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTV 353


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   G  PDI TYN +I  +  +  +DEA+ +FE+L     KP+ I++  LI+   
Sbjct: 464 LFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLG 523

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A + F +M EKG   +VVTYS L++ + K++ ++ A+ ++EEM      PNI 
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
                      +GR  EA+ LY  M + G+ PD +  + L      S G
Sbjct: 584 TYNILLDCLEKSGRTAEAVDLYTKMKQQGLTPDSITYTVLERLQSGSHG 632



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 73/124 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ +F +L     +PDII+YN++I        +DEA   F+++    L P+ +T++ 
Sbjct: 493 VDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYST 552

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ F K  R++ A  +F +ML KG + N+VTY+ L+D   KS     A D+Y +M +  
Sbjct: 553 LMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYTKMKQQG 612

Query: 128 ISPN 131
           ++P+
Sbjct: 613 LTPD 616



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 61/102 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ ++GL PD++TY+T++  +    R++ A  LFE++     +PN
Sbjct: 522 LGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPN 581

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   K GR  +A  +++KM ++G   + +TY+ L
Sbjct: 582 IVTYNILLDCLEKSGRTAEAVDLYTKMKQQGLTPDSITYTVL 623



 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  ++ ++   G + DI  YN ++    +L + ++A Q+FE +     + +  ++TI+I 
Sbjct: 222 AFDVYCEIRRGGHKLDIFAYNMLLD---ALAKDEKACQVFEDMKKRHCRRDEYSYTIMIR 278

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              + G+ D+A  +F++M+ +G   NVV Y+ L+    K + +  A  V+  M E    P
Sbjct: 279 TMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRP 338

Query: 131 N 131
           N
Sbjct: 339 N 339



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+  A +LF  +    ++ +  +Y +++   C   +  EA+++  K+    +  +
Sbjct: 382 LSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTD 441

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  +  A  K  ++     +F KM + GP  ++ TY+ LI  + +   +  A +++E
Sbjct: 442 TMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFE 501

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+  ++  P+I             G   EA   +  M   G+ PD +  STL +
Sbjct: 502 ELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLME 555



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 78/168 (46%), Gaps = 21/168 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF ++   GL  +++ YNT++        +D+A+Q+F ++     +PN  T++++
Sbjct: 287 DEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLV 346

Query: 69  IDAFCKEG---RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           ++    EG   R+D    +  + + +G       YS L+    K  ++  A  ++ +M  
Sbjct: 347 LNLLVAEGQLVRLDGIVEISKRYMTQG------IYSYLVRTLSKLGHVSEAHRLFCDMWS 400

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +                AG+  EA+++   +   G++ D ++ +T+
Sbjct: 401 FPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTV 448



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 44/198 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTII---CGYCSLNRLD------------- 44
           +L K   +D A+++F ++ + G  P+  TY+ ++        L RLD             
Sbjct: 314 VLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGIVEISKRYMTQG 373

Query: 45  ----------------EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                           EA +LF  +    +K    ++  ++++ C  G+  +A  M SK+
Sbjct: 374 IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKI 433

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
            EKG   + + Y+ +     K + +    D++E+M ++  SP+I             G  
Sbjct: 434 HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEV 493

Query: 137 TEAMQLYDSMLRNGIMPD 154
            EA+ +++ + R+   PD
Sbjct: 494 DEAINIFEELERSDCKPD 511



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A ++F  +  R    D  +Y  +I     + + DEAV LF ++    L  N + +  L
Sbjct: 252 EKACQVFEDMKKRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTL 311

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +    K   +D A  +FS+M+E G + N  TYS +++
Sbjct: 312 MQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLN 348



 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 26  DIITYNTIICGYCSLN---RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           D   YN II      N   R D    + + +    +  N  T  ILI  F   G  +D  
Sbjct: 132 DPFLYNRIILILSRSNLSDRFDRVRSILDSMVKSNVHGNISTVNILIGFF---GDTEDLQ 188

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           M    + + G K N  TY CL+  Y +S++   AFDVY E+
Sbjct: 189 MCLRLVKKWGLKMNSFTYKCLLQAYLRSRDSSKAFDVYCEI 229


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A KL+  +  R ++PDI TYN+++ G+C  +RLD+A Q+FE +      P+
Sbjct: 302 FVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 361

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R++D T +F +M  +G   + VTY+ LI G F   +  +A  V++
Sbjct: 362 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 421

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  + + P+I             G+  +A++++D M ++ I  D  + +T+ +
Sbjct: 422 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 475



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D AL L  ++    +E D++ +NTII   C    +D+A+ LF+++    ++PN
Sbjct: 197 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 256

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI   C  GR  DA+ + S M+EK    N+VT++ LID + K      A  +Y+
Sbjct: 257 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYD 316

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M + +I P+I              R  +A Q+++ M+     PD +  +TL
Sbjct: 317 DMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 368



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  RG +P+++TY  ++ G C     D A+ L  K+   +++ + + F  +ID
Sbjct: 171 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIID 230

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK   +DDA  +F +M  KG + NVVTYS LI           A  +  +M E  I+P
Sbjct: 231 SLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 290

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  EA +LYD M++  I PD    ++L +
Sbjct: 291 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 335



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++  +G+ P+++TY+++I   CS  R  +A QL   +   ++ PN
Sbjct: 232 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN 291

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            +TF  LIDAF KEG                                   R+D A  MF 
Sbjct: 292 LVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFE 351

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT--------- 137
            M+ K    +VVTY+ LI G+ KS+ ++   +++ EM    +  +     T         
Sbjct: 352 FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 411

Query: 138 ---EAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A +++  M+ +G+ PD +  S L D
Sbjct: 412 DCDNAQKVFKQMVSDGVPPDIMTYSILLD 440



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G  PD IT+ T+I G    N+  EAV L +++     +PN 
Sbjct: 128 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 187

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+ ++++  CK G  D A  + +KM     +A+VV ++ +ID   K +++  A ++++E
Sbjct: 188 VTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE 247

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN+             GR ++A QL   M+   I P+ +  + L D
Sbjct: 248 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 300



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F Q+   G+ PDI+TY+ ++ G C+  +L++A+++F+ +   ++K +   +T +
Sbjct: 414 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 473

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G++DD   +F  +  KG K NVVTY+ +I G    + ++ A+ + ++M E+  
Sbjct: 474 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 533

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            PN     T    L  + LR+G
Sbjct: 534 LPNSGTYNT----LIRAHLRDG 551



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 16/185 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   +  AL L G++   G EP I+T ++++ GYC   R+ +AV L +++  +  +P++I
Sbjct: 94  RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 153

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI       +  +A  +  +M+++G + N+VTY  +++G  K  +   A ++  +M
Sbjct: 154 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 213

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQ 167
               I  ++    T            +A+ L+  M   GI P+ +    L+S L  Y   
Sbjct: 214 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 273

Query: 168 SSGSQ 172
           S  SQ
Sbjct: 274 SDASQ 278



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + +  LD A+ LFG +      P I+ +N ++     + + D  + L EK+  +++    
Sbjct: 23  LHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGL 82

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ ILI+ FC+  ++  A  +  KM++ G + ++VT S L++GY   + +  A  + ++
Sbjct: 83  YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 142

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           M E    P+            +  + +EA+ L D M++ G  P+
Sbjct: 143 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 186



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +LF +++ RGL  D +TY T+I G       D A ++F+++    + P+ +
Sbjct: 374 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 433

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  C  G+++ A  +F  M +   K ++  Y+ +I+G  K+  +   +D++  +
Sbjct: 434 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 493

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+    T            EA  L   M  +G +P+    +TL   +L+
Sbjct: 494 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR 549



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL++F  +    ++ DI  Y T+I G C   ++D+   LF  L+   +KPN +T+  
Sbjct: 448 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 507

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +I   C +  + +A  +  KM E GP  N  TY+ LI  + +  +  ++ ++  EM
Sbjct: 508 MISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 563



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           + TYN +I  +C  +++  A+ L  K+  +  +P+ +T + L++ +C   R+ DA  +  
Sbjct: 82  LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 141

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M+E G + + +T++ LI G F       A  + + M +    PN+             G
Sbjct: 142 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 201

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A+ L + M    I  D ++ +T+ D
Sbjct: 202 DTDLALNLLNKMEAAKIEADVVIFNTIID 230



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D    LF  L+ +G++P+++TYNT+I G CS   L EA  L +K+      PNS 
Sbjct: 479 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSG 538

Query: 64  TFTILIDAFCKEG 76
           T+  LI A  ++G
Sbjct: 539 TYNTLIRAHLRDG 551


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    + P+  
Sbjct: 154 KEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD A  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLID 325



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G ++ A  +  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPD 386



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  L  +++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+   K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +  +P++ 
Sbjct: 412 EMQXDGHAPSVV 423



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + +  + G    +  +N +   +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S M   G   +V TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI-YGLCKK 295

Query: 170 G--SQEH 174
           G  +Q H
Sbjct: 296 GDLNQAH 302



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 56/103 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTG 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+  CK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   DA + LF ++ +RG+ PD  T+ T+I GYC    +D+A+ LFE +    LKP+ +
Sbjct: 480 KKMFADADM-LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKV 538

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID FCK G M  A  ++  M+ K    + ++Y  +++G+  S  +  A ++ ++M
Sbjct: 539 TYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  I PN+            +G   +A +    M+ NGI+PD    +TL D  L+ +  
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 172 QEHCI 176
           ++  I
Sbjct: 659 EKAFI 663



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  ALK+  ++  RG   D++TYNT + G C      +A  LF ++    + P+  TFT 
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +CK+G MD A  +F  M+    K + VTY+ LIDG+ K+  M  A +++++M   +
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD 567

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I P+             +G   EA+ L D ML  GI P+ +  +TL
Sbjct: 568 IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTL 613



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +  HL  AL  F ++   G+ PD + Y  +I G+C    L +A+++ +++       
Sbjct: 406 VLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+   ++  CK+    DA M+F++M+E+G   +  T++ LI GY K  NM  A +++
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 121 EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M   N+ P+             AG    A +L+D M+R  I+PD +   T+
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 47/217 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++D AL LF  +    L+PD +TYNT+I G+C    +  A +L++ +    + P+ I
Sbjct: 514 KDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHI 573

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT------------------------ 99
           ++  +++ FC  G + +A  +  +MLEKG + N+VT                        
Sbjct: 574 SYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKM 633

Query: 100 -----------YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
                      Y+ LIDGY K  N++ AF +  EM +  +  NI             G+ 
Sbjct: 634 ISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            EA Q+   M+  GI PDG   S+L + ++     +E
Sbjct: 694 QEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 89/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL L  Q+ ++G+ P+++T NT+I GYC    + +A +   K+    + P+S ++  
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID + KE  ++ A ++ ++M ++G + N++TY+ +++G+     M+ A  V  +M E  
Sbjct: 648 LIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIG 707

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           I+P+ A   +            EA + +D ML+ G++PD
Sbjct: 708 INPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 96/178 (53%), Gaps = 15/178 (8%)

Query: 1   MLIKECHLDAALK---LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +L++ C  D  L+   +F +++ RG+ PD+++++++I        L +A+  F ++    
Sbjct: 368 LLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSG 427

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P+++ +TILID FC+ G + DA  M  +ML +G   +VVTY+  ++G  K +    A 
Sbjct: 428 IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADAD 487

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++ EM E  + P+              G   +A+ L+++M+R  + PD +  +TL D
Sbjct: 488 MLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   +  +     +  +G+  DI+TYNT+I  YC    ++EA QL    +   ++P 
Sbjct: 267 LCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPG 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++   CK G+ D A  +  +ML+ G   N  TY+ L+    +  N+  A ++++
Sbjct: 327 LLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFD 386

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P++             G   +A+  +  M R+GI+PD ++ + L D
Sbjct: 387 EMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILID 440



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +D A +++G++   G+E ++ T N ++   C   + +  +     +    +  +
Sbjct: 232 LVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFAD 291

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+A+C+EG +++A  + +    +G +  ++TY+ ++ G  K      A DV  
Sbjct: 292 IVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  ++PN A   T            EA +++D M R G++PD +  S+L
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSL 403



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE +L+ A  L  ++  RGL+ +IITYN I+ G+C+  ++ EA Q+  K+  + + P+ 
Sbjct: 653 LKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDG 712

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            T++ LI+    +  M +A     +ML++G
Sbjct: 713 ATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   G+ PD+ TYN +I  Y  +  +D+A +LFE +     KP+ +T+  LI+   
Sbjct: 450 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 509

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K G +D+A M+F +M EKG   +V TYS LI+ + KS  ++ A  +++EM     +PNI 
Sbjct: 510 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 569

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  EA +LY++M + G++PD +  S L
Sbjct: 570 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 609



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 59/102 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF ++ ++G +PD+ TY+ +I  +   N+++ A  LF+++      PN
Sbjct: 508 LGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPN 567

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + G+ ++A  ++  M ++G   + +TYS L
Sbjct: 568 IVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 609



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 64/129 (49%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   +    +++ ++  +G + DI  YN ++        +D+A Q+FE +      P++
Sbjct: 197 LRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 256

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+TILI    K GR       F +M+ KG   N++ ++ +I+   K++ +     V  +
Sbjct: 257 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSK 316

Query: 123 MCENNISPN 131
           M EN+  PN
Sbjct: 317 MVENDCQPN 325



 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  +  +   PD  TY  +I       R  + +  F+++       N
Sbjct: 231 LAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I F  +I+A  K   +D    + SKM+E   + N  TYS  +D
Sbjct: 291 LIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLD 334



 Score = 40.8 bits (94), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 45/102 (44%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL     TY  I+  +     + +  Q++E++     K +   + +L+DA  K G +D A
Sbjct: 181 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 240

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             +F  M +K    +  TY+ LI    K+         ++EM
Sbjct: 241 FQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEM 282



 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 44/187 (23%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI---- 67
           L  F ++  +G   ++I +NTII        +D+ + +  K+     +PN  T++I    
Sbjct: 276 LSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDI 335

Query: 68  ----------------------------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
                                       L+ + CK G   +A  +F +M     K +   
Sbjct: 336 LATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDA 395

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------GRPTEA---MQLYDSML 147
           +  +++    ++    A D+   M E  I  ++          G+  +      L+D M 
Sbjct: 396 FVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMK 455

Query: 148 RNGIMPD 154
            NGI+PD
Sbjct: 456 TNGIIPD 462


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+   LD A+K+F  +  +G++P I+ YN +I G+C   ++ +A+    ++  V   P+
Sbjct: 495 FIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPD 554

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ +ID + K+  M  A  MF +M++   K NV+TY+ LI+G+ K  +M  A  V+ 
Sbjct: 555 EYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFS 614

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M   ++ PN+            AG+P  A  +++ ML NG +P+
Sbjct: 615 GMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPN 659



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 71/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  + A   L  ++ DR ++PD+  + T+I G+     LDEA+++F+ +    + P 
Sbjct: 460 LCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPG 519

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I  FCK G+M DA    ++M       +  TYS +IDGY K  +M SA  ++ 
Sbjct: 520 IVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFG 579

Query: 122 EMCENNISPNI 132
           +M ++   PN+
Sbjct: 580 QMMKHKFKPNV 590



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++  ++ + G  PDI TYN +I   C   R++EA +L EK     L PN  ++T L+ 
Sbjct: 329 AAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMH 388

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+CK+G    A+ M  ++ E G K+++V+Y   I G   +  +  A  V E+M E  + P
Sbjct: 389 AYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFP 448

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +              GR      L   ML   + PD  + +TL D
Sbjct: 449 DAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLID 493



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+  + +ALK+FGQ+     +P++ITY ++I G+C    +  A ++F  +    L PN 
Sbjct: 566 VKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNV 625

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           +T+T L+  F K G+ + AT +F  ML  G   N  T+  LI+G
Sbjct: 626 VTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLING 669



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 80/154 (51%), Gaps = 13/154 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ A+  LF ++ + G + D+++Y   I G      +D A+ + EK+    + P++  + 
Sbjct: 396 YVKASGMLF-RIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYN 454

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+   CK+GR+    ++ S+ML++  + +V  ++ LIDG+ ++  +  A  +++ +   
Sbjct: 455 ILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRK 514

Query: 127 NISPNIAGRPTEAMQLYDSMLRN----GIMPDGL 156
            + P I G        Y++M++     G M D L
Sbjct: 515 GVDPGIVG--------YNAMIKGFCKFGKMTDAL 540



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P ++ YN II GYC    L  A +   +L    + P   T+  LI+ FCK G  +    +
Sbjct: 238 PHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQL 297

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
            ++M  +G   NV  ++ +ID  +K   +  A ++   M E    P+I            
Sbjct: 298 LTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCK 357

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
            GR  EA +L +     G++P+
Sbjct: 358 GGRIEEADELLEKAKERGLLPN 379



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A +   +L  +G+ P + TY  +I G+C     +   QL  ++    L  N  
Sbjct: 252 KKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVK 311

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  +IDA  K G + +A  M  +M E G   ++ TY+ +I+   K   ++ A ++ E+ 
Sbjct: 312 VFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKA 371

Query: 124 CENNISPN 131
            E  + PN
Sbjct: 372 KERGLLPN 379



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    +A  +L  ++  RGL  ++  +N +I        + EA ++  ++  +   P+  
Sbjct: 287 KAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDIT 346

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I+I+  CK GR+++A  +  K  E+G   N  +Y+ L+  Y K  +   A  +   +
Sbjct: 347 TYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRI 406

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            E     +            +AG    A+ + + M+  G+ PD  +      YN+  SG
Sbjct: 407 AEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQI------YNILMSG 459



 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 8   LDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI--- 63
           LD AL+LF  + +     P  +  N ++ G     ++D A+QL++K+        ++   
Sbjct: 146 LDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDN 205

Query: 64  -TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T +I++   C  G++++   +      K    +VV Y+ +IDGY K  +++ A     E
Sbjct: 206 YTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNE 265

Query: 123 MCENNISPNI 132
           +    + P +
Sbjct: 266 LKMKGVLPTV 275


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  +  LDE  +L   +    + P+  
Sbjct: 148 KEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y +M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLID 319



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ B GL P+ +T+ T+I G+C   R+D A++++ ++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRK 335

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   LD   +L   +   G+ PD+ TY+ +I G C  +++D+A +LF+++    L PN 
Sbjct: 182 IKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNX 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK GR+D A  ++ +ML +    +++TY+ LI G  K  ++K A D+ +E
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDE 301

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 302 MSMKGLKPD 310



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               + P I             G      +L   M R G +P+
Sbjct: 373 LSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPN 415



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +C    +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + S M   G   +V TYS LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   ++PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTL 282



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+   K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM      PN+ 
Sbjct: 406 EMQRXGYVPNVV 417



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+  CK+G +   + +  +M   G   NVVT
Sbjct: 383 TYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  ++ ++  +G+ PD++TY T+I G+C +  L EA  L  ++    + PN  TF I
Sbjct: 213 LGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNI 272

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA  KEG+M +A ++ + M++   K +V TY+ LIDGYF    +K A  V+  M +  
Sbjct: 273 LIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRG 332

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++P++                 EAM L++ M    ++PD +  ++L D
Sbjct: 333 VTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLID 380



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 74/124 (59%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  + + PDI+TYN++I G C  + L+ A+ L +++    ++P+  ++TI
Sbjct: 353 VDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTI 412

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK GR++DA  +F ++L KG   NV  Y+ LI+   K+     A D+  +M +  
Sbjct: 413 LLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKG 472

Query: 128 ISPN 131
             P+
Sbjct: 473 CMPD 476



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL    QL  +G + D ++Y T+I G C         +L  KL    +KP+ + +  
Sbjct: 143 IKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNT 202

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I++ CK   + DA  ++S+M+ KG   +VVTY+ LI G+    ++K AF +  EM   N
Sbjct: 203 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKN 262

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+PN+             G+  EA  L   M++  I PD    ++L D
Sbjct: 263 INPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLID 310



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 12/155 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  RG+ PD+  Y  +I G C    +DEA+ LFE++    + P+ +T+  LID  C
Sbjct: 324 VFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLC 383

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K   ++ A  +  +M E+G + +V +Y+ L+DG  KS  ++ A ++++ +       N+ 
Sbjct: 384 KNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVH 443

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGL 156
                      AG   EA+ L   M   G MPD +
Sbjct: 444 AYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAV 478



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 67/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+ L  ++ ++G++PD+ +Y  ++ G C   RL++A ++F++L       N
Sbjct: 382 LCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLN 441

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T+LI+  CK G  D+A  + SKM +KG   + VT+  +I   F+      A  +  
Sbjct: 442 VHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILR 501

Query: 122 EM 123
           EM
Sbjct: 502 EM 503



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  L   +    ++PD+ TYN++I GY  ++ +  A  +F  +    + P+
Sbjct: 277 LSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPD 336

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T +I+  CK   +D+A  +F +M  K    ++VTY+ LIDG  K+ +++ A  + +
Sbjct: 337 VQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCK 396

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
            M E  I P++            +GR  +A +++  +L  G
Sbjct: 397 RMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKG 437



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+   H    + LF Q    G+ PD+ T + +I  +C    +  A  +F  +      PN
Sbjct: 67  LVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPN 126

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT   LI   C  G +  A     +++ +G + + V+Y  LI+G  K+   K+   +  
Sbjct: 127 AITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLR 186

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           ++  +++ P++    T            +A  +Y  M+  GI PD +  +TL
Sbjct: 187 KLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTL 238



 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 47/99 (47%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P    +N I+    +       + LF++     + P+  T +ILI+ FC +  +  A  +
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           F+ +L++G   N +T + LI G      +K A   ++++
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQL 153


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 136 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVY 195

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y+ M
Sbjct: 196 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRM 255

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 256 LSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 307



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 204 LCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPD 263

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF   +
Sbjct: 264 LITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRK 323

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           G+  +A ++   ML  G+ PD
Sbjct: 324 RMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPD 368



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ ++  + L PD+ITYNT+I G C    L +A  L ++++   LKP+  
Sbjct: 241 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF 300

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG +D A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 301 TYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREM 360

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
               + P+I             G   +  +L   M RNG  P      ++  YN+  +G
Sbjct: 361 LSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAP------SVVTYNVLMNG 413



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 99  LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 158

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 159 VVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFD 218

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L  +
Sbjct: 219 EMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLI-YGLCKN 277

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 278 GDLKQAH 284



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 274 LCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLD 333

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EG+  DA  M  +ML  G K ++ TY+ +I+ + K  ++     + +
Sbjct: 334 DVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLK 393

Query: 122 EMCENNISPNIA 133
           EM  N  +P++ 
Sbjct: 394 EMQRNGHAPSVV 405


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++T +G+  D++TY T+I G+C  ++L EA+ L  ++    + PN  T+ IL+D
Sbjct: 218 AYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CKEG++ +A  + + ML+   K +V+TYS L+DGYF    +K A  V+  M    ++P
Sbjct: 278 ALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTP 337

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++                 EA+ L+  M +  ++P  +  S+L D
Sbjct: 338 DVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 72/130 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +     L  ++ DRG+  ++ITYN++I G C    LD A+ LF K+    ++P 
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPC 443

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S TFTIL+D  CK GR+ DA   F  +L KG   +V  Y+ +I+G+ K   ++ A  +  
Sbjct: 444 SFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLS 503

Query: 122 EMCENNISPN 131
           +M EN   PN
Sbjct: 504 KMEENGCVPN 513



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +    ++PD+ITY+T++ GY  +  L +A  +F  ++ + + P+
Sbjct: 279 LCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPD 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++TILI+ FCK   +D+A  +F +M +K     +VTYS LIDG  KS  +   +D+ +
Sbjct: 339 VHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLID 398

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  I  N+             G    A+ L++ M   GI P     + L D
Sbjct: 399 EMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLD 452



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ AL    +L  +G++ D ++Y T+I G C +     A++L  K+     KPN   + 
Sbjct: 144 QVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYN 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +IDA CK   + +A  +FS+M  KG  A+VVTY+ LI G+  +  +K A  +  EM   
Sbjct: 204 TIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLK 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I+PN+             G+  EA  +   ML+  + PD +  STL D
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMD 312



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL LF ++  + + P I+TY+++I G C   R+     L +++    +  N IT+  
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNS 414

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G +D A  +F+KM ++G +    T++ L+DG  K   +K A + ++++    
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKG 474

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
              ++             G   EA+ +   M  NG +P+ +
Sbjct: 475 YHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAV 515



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   A+ L  +L  +G++PD+IT N +I  +C + ++     +  K+     +P++ITFT
Sbjct: 74  HYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFT 133

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C +G+++ A     K+L +G K + V+Y  LI+G  K  + + A  +  ++   
Sbjct: 134 TLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGR 193

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              PN+    T            EA  L+  M   GI  D +  +TL
Sbjct: 194 LTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTL 240



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ LF ++ D+G+ P   T+  ++ G C   RL +A + F+ L       +
Sbjct: 419 LCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLD 478

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + ++I+  CK+G +++A  M SKM E G   N VT+  +I+  FK      A  +  
Sbjct: 479 VYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLR 538

Query: 122 EM 123
           +M
Sbjct: 539 QM 540



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 23/157 (14%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+  F ++      P II +N I+  +  +     AV L  +L    ++P+ IT  
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+ FC  G++     + +K+L++G + + +T++ LI G                +C  
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKG----------------LC-- 140

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                + G+  +A+  +D +L  GI  D +   TL +
Sbjct: 141 -----LKGQVNKALHFHDKLLAQGIKFDQVSYGTLIN 172


>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
 gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
          Length = 558

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+++F  +   G EP I +YN+++ G C + RL+EA+ L  KL    + P+
Sbjct: 223 LCKRGRVTKAMEVFDAMRALGCEPTIRSYNSLVGGLCYVGRLEEALDLLNKLKDSPMTPD 282

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTI++D FCK GR ++AT +F   +  G    + TY+ L++G+ K  N   AF +  
Sbjct: 283 IYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTIFTYNALLNGHCKEGNPLKAFALLM 342

Query: 122 EMCENN-------ISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EMC N+       IS  I       AG  + A Q Y  M R G   DG  L TL
Sbjct: 343 EMCGNDAACPPDKISFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTL 396



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD  ++ T +   C     DEA    +++     +P+  TF+ ++   CK GR+  A  +
Sbjct: 176 PDAQSFATAVQCLCRQGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEV 235

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           F  M   G +  + +Y+ L+ G      ++ A D+  ++ ++ ++P+I            
Sbjct: 236 FDAMRALGCEPTIRSYNSLVGGLCYVGRLEEALDLLNKLKDSPMTPDIYTFTIVLDGFCK 295

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            GR  EA  ++   +  G+ P      T+  YN   +G   HC
Sbjct: 296 VGRTEEATAIFHDAIGMGLSP------TIFTYNALLNG---HC 329


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  L+ ++  +G+ P+++TYN ++ G+C +  L EA  L  ++    + P+  TF  
Sbjct: 219 LGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNT 278

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA  KEG+M  A ++ + M++   K +VVTY+ LIDGYF    +K+A  V+  M ++ 
Sbjct: 279 LIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSG 338

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++PN+    T            EAM L++ M    ++PD +  ++L D
Sbjct: 339 VTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLID 386



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 23/160 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A+ LF ++  + + PDI+TY ++I G C  + L+ A+ L +K+    ++P+
Sbjct: 353 LCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPD 412

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++TIL+DA CK GR+++A   F ++L KG   NV TY+ +I+G  K+       D++ 
Sbjct: 413 VYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKA-------DLF- 464

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                           EAM L   M   G MPD +   T+
Sbjct: 465 ---------------GEAMDLKSKMEGKGCMPDAITFKTI 489



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  + AA  +   +    ++PD++TYN++I GY  LN++  A  +F  +    + PN  
Sbjct: 285 KEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVR 344

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID  CKE  +D+A  +F +M  K    ++VTY+ LIDG  K+ +++ A  + ++M
Sbjct: 345 TYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKM 404

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNG 150
            E  I P++             GR   A + +  +L  G
Sbjct: 405 KEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKG 443



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  L  A  +   +T   ++PD++TY T++ GY  +N L  A  +F  +  + + PN  
Sbjct: 518 RKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQ 577

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +TI+ID  CK+  +D+A  +F +M  K    N+VTY+ LID   K+ +++ A  + +EM
Sbjct: 578 CYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEM 637

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNG 150
            E+ I P++            +GR   A +++  +L  G
Sbjct: 638 KEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKG 676



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  +F  +   G+ P++  Y  +I G C    +DEA+ LFE++    + PN +T+T 
Sbjct: 557 LKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTS 616

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CK   ++ A  +  +M E G + +V +Y+ L+DG  KS  ++ A ++++ +    
Sbjct: 617 LIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKG 676

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
              N+            AG   EA+ L   M   G MPD +
Sbjct: 677 YHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAV 717



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL    Q+  +G + + ++Y T+I G C         +L  KL    +KP+ + +  
Sbjct: 149 IKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNT 208

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I + CK   + DA  ++S+M+ KG   NVVTY+ L+ G+    ++K AF +  EM   N
Sbjct: 209 IIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKN 268

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+P++             G+   A  +   M++  I PD +  ++L D
Sbjct: 269 INPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLID 316



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  A  +   +  RG  P+ IT NT+I G C    + +A+   +++     + N +++ 
Sbjct: 113 HITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYR 172

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK G       +  K+     K +VV Y+ +I    K++ +  A D+Y EM   
Sbjct: 173 TLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVK 232

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN+             G   EA  L + M    I PD    +TL D
Sbjct: 233 GISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLID 281



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+ L  ++ ++G++PD+ +Y  ++   C   RL+ A + F++L       N
Sbjct: 388 LCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLN 447

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ++I+  CK     +A  + SKM  KG   + +T+  +I   F+      A  +  
Sbjct: 448 VQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILR 507

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    +      R  EA  +   M +  I PD +   TL D
Sbjct: 508 EMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMD 549



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 63/122 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+ L  ++ + G++PD+ +Y  ++ G C   RL+ A ++F++L       N
Sbjct: 621 LCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLN 680

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T +I+  CK G  D+A  +  KM +KG   + VT+  +I   F+      A  +  
Sbjct: 681 VQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILX 740

Query: 122 EM 123
           EM
Sbjct: 741 EM 742



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+   H    + LF +    G  PD+ T N ++  +C L  +  A  +   +      PN
Sbjct: 73  LVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPN 132

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT   LI   C  G +  A     +++ +G + N V+Y  LI+G  K+   K+   +  
Sbjct: 133 AITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLR 192

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLA 162
           ++  +++ P++    T            +A  LY  M+  GI P+ +  + L 
Sbjct: 193 KLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALV 245



 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 44/107 (41%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P    +N I+    +       + LF+K       P+  T  IL++ FC    +  A  +
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            + +L++G   N +T + LI G      +K A   ++++       N
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLN 167


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   DA + LF ++ +RG+ PD  T+ T+I GYC    +D+A+ LFE +    LKP+ +
Sbjct: 480 KKMFADADM-LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKV 538

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID FCK G M  A  ++  M+ K    + ++Y  +++G+  S  +  A ++ ++M
Sbjct: 539 TYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  I PN+            +G   +A +    M+ NGI+PD    +TL D  L+ +  
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 172 QEHCI 176
           ++  I
Sbjct: 659 EKAFI 663



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  ALK+  ++  RG   D++TYNT + G C      +A  LF ++    + P+  TFT 
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +CK+G MD A  +F  M+    K + VTY+ LIDG+ K+  M  A +++++M   +
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD 567

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I P+             +G   EA+ L D ML  GI P+ +  +TL
Sbjct: 568 IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTL 613



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +  HL  AL  F ++   G+ PD + Y  +I G+C    L +A+++ +++       
Sbjct: 406 VLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+   ++  CK+    DA M+F++M+E+G   +  T++ LI GY K  NM  A +++
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 121 EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M   N+ P+             AG    A +L+D M+R  I+PD +   T+
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 47/217 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++D AL LF  +    L+PD +TYNT+I G+C    +  A +L++ +    + P+ I
Sbjct: 514 KDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHI 573

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT------------------------ 99
           ++  +++ FC  G + +A  +  +MLEKG + N+VT                        
Sbjct: 574 SYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKM 633

Query: 100 -----------YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
                      Y+ LIDGY K  N++ AF +  EM +  +  NI             G+ 
Sbjct: 634 ISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            EA Q+   M+  GI PDG   S+L + ++     +E
Sbjct: 694 QEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 89/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL L  Q+ ++G+ P+++T NT+I GYC    + +A +   K+    + P+S ++  
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID + KE  ++ A ++ ++M ++G + N++TY+ +++G+     M+ A  V  +M E  
Sbjct: 648 LIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIG 707

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           I+P+ A   +            EA + +D ML+ G++PD
Sbjct: 708 INPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 96/178 (53%), Gaps = 15/178 (8%)

Query: 1   MLIKECHLDAALK---LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +L++ C  D  L+   +F +++ RG+ PD+++++++I        L +A+  F ++    
Sbjct: 368 LLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSG 427

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P+++ +TILID FC+ G + DA  M  +ML +G   +VVTY+  ++G  K +    A 
Sbjct: 428 IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADAD 487

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++ EM E  + P+              G   +A+ L+++M+R  + PD +  +TL D
Sbjct: 488 MLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   +  +     +  +G+  DI+TYNT+I  YC    ++EA QL    +   ++P 
Sbjct: 267 LCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPG 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++   CK G+ D A  +  +ML+ G   N  TY+ L+    +  N+  A ++++
Sbjct: 327 LLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFD 386

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P++             G   +A+  +  M R+GI+PD ++ + L D
Sbjct: 387 EMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILID 440



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +D A +++G++   G+E ++ T N ++   C   + +  +     +    +  +
Sbjct: 232 LVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFAD 291

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+A+C+EG +++A  + +    +G +  ++TY+ ++ G  K      A DV  
Sbjct: 292 IVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  ++PN A   T            EA +++D M R G++PD +  S+L
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSL 403



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 54/90 (60%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE +L+ A  L  ++  RGL+ +IITYN I+ G+C+  ++ EA Q+  K+  + + P+ 
Sbjct: 653 LKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDG 712

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            T++ LI+    +  M +A     +ML++G
Sbjct: 713 ATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE   + A+K+ G + D+GL PD+  YNT+I G+C   +++E      ++    LKPN
Sbjct: 487 LVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPN 546

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   I  +C+ G M  A   F +ML+ G   N V  + LIDGY K  N   AF  + 
Sbjct: 547 VYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFR 606

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P++             G+  EAM ++  +L  G++PD    ++L
Sbjct: 607 CMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSL 658



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 48/213 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A +LF  + ++GL  + +TY+TII GYC    L EA QLF  +  V + P+
Sbjct: 697 LCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPD 756

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S  +  LID  CK G  + A  +F  M+E+G  A+   ++ LIDG+FK   +  A+ + E
Sbjct: 757 SFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQLVE 815

Query: 122 EMCENNISPNIA-----------------------------------------------G 134
           +M +N+I+PN                                                 G
Sbjct: 816 DMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIG 875

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           R +E   L+D M+  GI PD L  S + D +L+
Sbjct: 876 RRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLK 908



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 48/207 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYN------------------------------ 31
           L KE  L AA +L   +  +G+ P+I+TYN                              
Sbjct: 662 LCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARN 721

Query: 32  -----TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                TII GYC    L EA QLF  +  V + P+S  +  LID  CK G  + A  +F 
Sbjct: 722 SVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFL 781

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAG 134
            M+E+G  A+   ++ LIDG+FK   +  A+ + E+M +N+I+PN              G
Sbjct: 782 GMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVG 840

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              EA QL+  M +  +MP+ L  ++L
Sbjct: 841 NIKEAEQLFMEMQKRNVMPNVLTYTSL 867



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A +LF ++   GL+P+I+ Y TI+ G     R +EA+++   +    L P+ 
Sbjct: 453 CHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDV 512

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I  FCK G+M++      +M+ KG K NV TY   I GY ++  M++A   + E
Sbjct: 513 FCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIE 572

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           M ++ I+PN              G  T+A   +  ML  G++PD
Sbjct: 573 MLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPD 616



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ +F +L D+GL PD+ TY ++I   C    L  A +L + +    + PN
Sbjct: 627 LSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPN 686

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK G +  A  +F  + EKG   N VTYS +I GY KS N+  AF ++ 
Sbjct: 687 IVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFH 746

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
            M    + P+             AG   +A+ L+  M+  GI
Sbjct: 747 GMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI 788



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 13/167 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL+PD + Y  +I G+   + +  A Q+ E++   ++K N+ T+  LI   CK G ++ A
Sbjct: 332 GLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKA 391

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +FS+M   G K ++ TY+CLI+GY+K QNM+ A+++  E+ + N++ N          
Sbjct: 392 EDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNG 451

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
               G  T A +L+  M+  G+ P+ ++ +T+    L   G  E  I
Sbjct: 452 LCHCGDLTRANELFQEMISWGLKPNIVIYTTIVK-GLVKEGRFEEAI 497



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + AA + F ++ D G+ P+ +    +I GYC      +A   F  +    + P+  T ++
Sbjct: 563 MQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSV 622

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K G++ +A  +FS++L+KG   +V TY+ LI    K  ++K+AF+++++MC+  
Sbjct: 623 LIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKG 682

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I+PNI             G   +A +L+D +   G+  + +  ST+
Sbjct: 683 INPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTI 728



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +   A   F  + D+G+ PD+ T++ +I G     +L EA+ +F +L    L P+  
Sbjct: 594 KDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVF 653

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI   CKEG +  A  +   M +KG   N+VTY+ LI+G  K   +  A ++++ +
Sbjct: 654 TYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGI 713

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  ++ N       IAG       TEA QL+  M   G+ PD  +   L D
Sbjct: 714 PEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALID 765



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + ++G  P+++TY+ +I G C    +DEA++L   +    L P++  +  LID FC++ R
Sbjct: 258 MEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKR 317

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
             +   M  +M   G K + V Y+ LI+G+ K  ++  AF V EEM    I  N      
Sbjct: 318 STEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYA 377

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPD 154
                   G   +A  L+  M   GI PD
Sbjct: 378 LIHGLCKIGDLEKAEDLFSEMTMMGIKPD 406



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 47/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGY------------------------------ 37
           L+ A  LF ++T  G++PDI TYN +I GY                              
Sbjct: 388 LEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGA 447

Query: 38  -----CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                C    L  A +LF+++    LKPN + +T ++    KEGR ++A  +   M ++G
Sbjct: 448 IVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQG 507

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
              +V  Y+ +I G+ K+  M+       EM    + PN+            AG    A 
Sbjct: 508 LSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAE 567

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
           + +  ML +GI P+ ++ + L D
Sbjct: 568 RSFIEMLDSGIAPNDVICTDLID 590



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 12/155 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A +LF ++  R + P+++TY +++ GY  + R  E   LF+++    +KP+ + ++
Sbjct: 841 NIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWS 900

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +++DA  KEG    A  +   ML +G       Y+ LID   K  N+     V +E+ + 
Sbjct: 901 VMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQ 960

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRN 149
               ++            AGR  EA+++ +SM+R+
Sbjct: 961 GSKLSLATCGTLVCCFHRAGRTDEALRVLESMVRS 995



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 64/119 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   + D  + P+ +TY  +I  +C++  + EA QLF ++    + PN +T+T L+ 
Sbjct: 810 AYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLH 869

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            + + GR  +   +F +M+ +G K + + +S ++D + K  N   A  + ++M    ++
Sbjct: 870 GYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVN 928



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  +  A ++  ++  R ++ +  TY  +I G C +  L++A  LF ++T + +KP+
Sbjct: 347 FVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPD 406

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI+ + K   M+ A  +  ++ ++   AN      +++G     ++  A ++++
Sbjct: 407 IQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQ 466

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PNI             GR  EA+++   M   G+ PD    +T+
Sbjct: 467 EMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTV 518



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 21/160 (13%)

Query: 31  NTIICGYCSLNRLDE------AVQLFEKLTCVQLK---PNSITFTILIDAFCKEGRMDDA 81
           N  I G    N L +       V+LF K+    L    P+  T+T LI+A+C+ G++++ 
Sbjct: 192 NEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEG 251

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG 134
             +   M EKG   N+VTYS +I G  ++ ++  A ++   M    + P+       I G
Sbjct: 252 KHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDG 311

Query: 135 -----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
                R TE   + D M   G+ PD +  + L +  ++ S
Sbjct: 312 FCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQS 351



 Score = 42.4 bits (98), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 46/167 (27%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF----------------- 85
           LD  ++ ++++       + + F ILID + K+G +++A  +F                 
Sbjct: 144 LDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNS 203

Query: 86  -SKMLEKGPKA----------------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
            SK L KG +                 +V TY+ LI+ Y +   ++    V  +M E   
Sbjct: 204 LSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGC 263

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN+            AG   EA++L  SM   G++PD  + +TL D
Sbjct: 264 IPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLID 310


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE ++D+A  +F++ML++G   N VT++ LID + K+  + SA ++Y++M
Sbjct: 208 TYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                SP++             G   +   L D M  NG+ PD +  +TL D
Sbjct: 268 LSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLID 319



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ DRGL P+ +T+ T+I  +C    +D A+++++++      P+
Sbjct: 216 LCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +     +  +M   G K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + +I   N+A           GR  +A +++  ML  G+ PD
Sbjct: 336 RMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPD 380



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 72/129 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L     L  +++  GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +T L+   C+EGR DDA  MF +ML  G K +  TY+ +I+ + K  ++++A  + +
Sbjct: 346 NVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLK 405

Query: 122 EMCENNISP 130
           EM  +   P
Sbjct: 406 EMQRDGHVP 414



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 111 LMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + S M   G + +V TYS LI+G  K   +  A +++ 
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFN 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + PN              G    AM++Y  ML  G  PD +  +TL
Sbjct: 231 EMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTL 282



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 53/96 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  ++ G C   R D+A ++F ++  V LKP++ 
Sbjct: 323 KEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +  A+ +  +M   G    VVT
Sbjct: 383 TYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 18/182 (9%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  LD AL+LF  + ++ L PDI+TYNT+I G C    LD+A  L++ +   ++ PN +T
Sbjct: 99  EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT 158

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ILID+ C++G+++DA     +M+ KG   N++TY+ +I GY +S N+       ++M 
Sbjct: 159 YSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 218

Query: 125 ENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            N +SP++    T            +A +L + M +  + PD      +  YN+  +G  
Sbjct: 219 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD------VVTYNMLINGFS 272

Query: 173 EH 174
            H
Sbjct: 273 VH 274



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  L  ++ +RG+ PD+ T+ T+I GYC   +LD+A+QLF+ +   +L+P+
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 120

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  C++G +D A  ++  M  +    N VTYS LID + +   ++ AF   +
Sbjct: 121 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD 180

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    I PNI            +G  ++  +    M+ N + PD +  +TL
Sbjct: 181 EMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 232



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A     ++ ++G+ P+I+TYN+II GYC    + +  +  +K+   ++ P+ IT+ 
Sbjct: 171 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYN 230

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  + KE +M DA  + + M ++  + +VVTY+ LI+G+    N++ A  ++E+MC  
Sbjct: 231 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 290

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            I P+             AG   EA QL+D ML+ G  PD
Sbjct: 291 GIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++   G  PD++TYNT++ G C   RL +A  L  ++    + P+  TFT LI 
Sbjct: 35  ALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 94

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C EG++D A  +F  ML +  + ++VTY+ LIDG  +  ++  A D++++M    I P
Sbjct: 95  GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 154

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N              G+  +A    D M+  GI+P+
Sbjct: 155 NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 190



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL PD + Y  +I G+C    + +A+++ +++      P+ +T+  L++  CKE R+ DA
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + ++M E+G   ++ T++ LI GY     +  A  +++ M    + P+I         
Sbjct: 71  EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 130

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               G   +A  L+D M    I P+ +  S L D
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 164



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 12/126 (9%)

Query: 50  FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
             ++ C  L P+ + +T++I  FC+ G M DA  +  +M+  G   +VVTY+ L++G  K
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 110 SQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLL 157
            + +  A  +  EM E  + P+            I G+  +A+QL+D+ML   + PD + 
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 158 LSTLAD 163
            +TL D
Sbjct: 124 YNTLID 129



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IKE  +  A KL   +    ++PD++TYN +I G+     + EA  +FEK+    ++P+ 
Sbjct: 237 IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 296

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            T+  +I+     G   +A  +  +ML++G
Sbjct: 297 YTYMSMINGHVTAGNSKEAFQLHDEMLQRG 326


>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 458

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A  L+ ++   G+ P+++TY  +I G+C + +L+EA+ LF+K+    + PN  
Sbjct: 184 KDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVY 243

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  L+DAFCKEG++++A  + + M+EK  K++VV YS L++GY     +  A  +++ M
Sbjct: 244 TFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTM 303

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  +S ++                 EA++L++ M    I PD +   TL D
Sbjct: 304 AERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLID 355



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 66/118 (55%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           QL  +  EPD++ Y T+I   C    +++A  L+ ++    + PN +T+T LID FC  G
Sbjct: 162 QLLRQAFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVG 221

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG 134
           ++++A  +F KM+ +    NV T++ L+D + K   ++ A +V   M E ++  ++  
Sbjct: 222 KLEEALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVA 279



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 74/129 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A  +   + ++ L+ D++ Y++++ GYC +N + +A  +F+ +   +L  +  
Sbjct: 254 KEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYDVR 313

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ I+I+ FCK   +D+A  +F +M  K    +VVTY  LIDG  KS  +  A ++ +EM
Sbjct: 314 SYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSYAMELVDEM 373

Query: 124 CENNISPNI 132
            +    PNI
Sbjct: 374 DDRGEPPNI 382



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 58/95 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  + +R L  D+ +YN +I  +C +  +DEA++LFE++   Q+ P+ +T+  LID
Sbjct: 296 AQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLID 355

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
             CK GR+  A  +  +M ++G   N++TY  ++D
Sbjct: 356 GLCKSGRLSYAMELVDEMDDRGEPPNIITYCPIVD 390



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 17/156 (10%)

Query: 21  RGLEPDIITYNTIICGYCSL-NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79
           RG + D  +Y T+I G C +      A+QL  +      +P+ + +T +ID  CK+  ++
Sbjct: 134 RGFDVDHYSYGTLINGLCKVGGDTRAALQLLRQ----AFEPDVVMYTTVIDNMCKDTFVN 189

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------- 132
           DA  ++ +M+  G   NVVTY+ LIDG+     ++ A  ++++M   NI+PN+       
Sbjct: 190 DAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLV 249

Query: 133 -----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 G+  EA  + ++M+   +  D +  S+L +
Sbjct: 250 DAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMN 285



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KLF ++  + + PD++TY+T+I G C   RL  A++L +++      PN IT+  
Sbjct: 328 VDEAIKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCP 387

Query: 68  LIDAFCK 74
           ++D  CK
Sbjct: 388 IVDVLCK 394


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 140 KEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVY 199

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE ++D A  +F +ML+KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 200 TYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 259

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++S ++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 260 LSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLID 311



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++    L  +
Sbjct: 208 LCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSAD 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 268 LITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRK 327

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ PD
Sbjct: 328 RMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPD 372



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 278 LCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 337

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++ +   + +
Sbjct: 338 DVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLK 397

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 398 EMQRDGHVPSVV 409



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 103 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPS 162

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + S M   G + +V TYS LI+G  K   +  A ++++
Sbjct: 163 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFD 222

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM +  + PN              GR   AM++Y  ML   +  D +  +TL  Y L   
Sbjct: 223 EMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLI-YGLCKK 281

Query: 170 G 170
           G
Sbjct: 282 G 282



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y T+I G C   R  +A ++  ++  V LKP++ 
Sbjct: 315 KEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTG 374

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 375 TYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A +LF ++T+RG+ PD  T+ T+I GY     +++AV LFE +    LKP+
Sbjct: 474 LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD 533

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID FCK   M+    +++ M+ +    N ++Y  LI+GY     +  AF +++
Sbjct: 534 VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 593

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E      I            AG   +A +   +ML  GI+PDG+  +TL +
Sbjct: 594 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLIN 647



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  ALK+  ++ ++G   D++TYNTI+ G C    L EA +LF ++T   + P+  TFT 
Sbjct: 445 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 504

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ + K+G M+ A  +F  M+++  K +VVTY+ LIDG+ K   M+   +++ +M    
Sbjct: 505 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 564

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I PN              G  +EA +L+D M+  G
Sbjct: 565 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 599



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 68/111 (61%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD ITYNT+I G+     +D A  L  K+    L P+ IT+ ++++ F ++GRM +
Sbjct: 633 KGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQE 692

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           A ++  KM+E+G   +  TY+ LI+G+    N+K AF V++EM +    P+
Sbjct: 693 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 18/159 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---PNSITFTI 67
           A +L+ ++ ++G E  IIT NTI+ GYC   R   AV+  E L+ + LK   P+ IT+  
Sbjct: 588 AFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPDGITYNT 644

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ F KE  MD A  + +KM   G   +V+TY+ +++G+ +   M+ A  +  +M E  
Sbjct: 645 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 704

Query: 128 ISPN-------IAGRPT-----EAMQLYDSMLRNGIMPD 154
           ++P+       I G  T     EA +++D ML+ G +PD
Sbjct: 705 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 100/179 (55%), Gaps = 17/179 (9%)

Query: 1   MLIKECHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCV 56
           +L++ C  D    A ++F ++  +G+ PD+++++ +I G  S N  LD+A++ F  +   
Sbjct: 365 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI-GLLSKNGCLDQALKYFRDMKNA 423

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L P+++ +TILI  FC+ G M +A  +  +MLE+G   +VVTY+ +++G  K + +  A
Sbjct: 424 GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEA 483

Query: 117 FDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +++ EM E  + P+              G   +A+ L++ M++  + PD +  +TL D
Sbjct: 484 DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 542



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++        + ++G+ PD++TYNT+I  YC    L+EA +L + ++   LKP 
Sbjct: 264 LCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPC 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+  CK G+   A  +  +ML+ G   +  TY+ L+    ++ NM  A  +++
Sbjct: 324 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 383

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P++             G   +A++ +  M   G+ PD ++ + L
Sbjct: 384 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 435



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +L+  +  R + P+ I+Y  +I GYC++  + EA +L++++     +   I
Sbjct: 546 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 605

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   ++  +C+ G    A    S ML KG   + +TY+ LI+G+ K +NM  AF +  +M
Sbjct: 606 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 665

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             + + P++             GR  EA  +   M+  G+ PD    ++L + ++  +  
Sbjct: 666 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 725

Query: 172 QE 173
           +E
Sbjct: 726 KE 727



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D A +++ ++   G++ ++ T N +I   C   +++        +    + P+
Sbjct: 229 LVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD 288

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+A+C++G +++A  +   M  KG K  V TY+ +I+G  K+     A  V +
Sbjct: 289 VVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLD 348

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  +SP+ A                +A +++D M   G++PD +  S L
Sbjct: 349 EMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 400



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  L  +GL   I   N+++ G   +  +D A ++++++    ++ N  T  I+I+A CK
Sbjct: 207 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK 266

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
             ++++     S M EKG   +VVTY+ LI+ Y +   ++ AF++ + M    + P +  
Sbjct: 267 NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT 326

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPD 154
                      G+   A  + D ML+ G+ PD
Sbjct: 327 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 358



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE ++D A  L  ++ + GL PD+ITYN I+ G+    R+ EA  +  K+    + P+
Sbjct: 649 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 708

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+T LI+    +  + +A  +  +ML++G
Sbjct: 709 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 739



 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           + ++ ++  Y    +L E  + F  L    L  +      L+    K G +D A  ++ +
Sbjct: 185 LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQE 244

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           ++  G + NV T + +I+   K+Q +++      +M E  + P++             G 
Sbjct: 245 VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 304

Query: 136 PTEAMQLYDSMLRNGIMP 153
             EA +L DSM   G+ P
Sbjct: 305 LEEAFELMDSMSGKGLKP 322


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 18/182 (9%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  LD AL+LF  + ++ L PDI+TYNT+I G C    LD+A  L++ +   ++ PN +T
Sbjct: 353 EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT 412

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ILID+ C++G+++DA     +M+ KG   N++TY+ +I GY +S N+       ++M 
Sbjct: 413 YSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 472

Query: 125 ENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            N +SP++    T            +A +L + M +  + PD      +  YN+  +G  
Sbjct: 473 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD------VVTYNMLINGFS 526

Query: 173 EH 174
            H
Sbjct: 527 VH 528



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  L  ++ +RG+ PD+ T+ T+I GYC   +LD+A+QLF+ +   +L+P+
Sbjct: 315 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 374

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  C++G +D A  ++  M  +    N VTYS LID + +   ++ AF   +
Sbjct: 375 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD 434

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    I PNI            +G  ++  +    M+ N + PD +  +TL
Sbjct: 435 EMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 486



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 12/156 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A     ++ ++G+ P+I+TYN+II GYC    + +  +  +K+   ++ P+ IT+ 
Sbjct: 425 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYN 484

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  + KE +M DA  + + M ++  + +VVTY+ LI+G+    N++ A  ++E+MC  
Sbjct: 485 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 544

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNG 150
            I P+             AG   EA QL+D ML+ G
Sbjct: 545 GIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 94/168 (55%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ ALK++ ++  RG++PD+++++ +I  +    ++D A+    ++ C  L P+ + +T+
Sbjct: 216 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 275

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC+ G M DA  +  +M+  G   +VVTY+ L++G  K + +  A  +  EM E  
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+            I G+  +A+QL+D+ML   + PD +  +TL D
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 383



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +AA+ L   +  +GL+P I+TYN+++ G C     D+A ++F+++    + P+  +FTIL
Sbjct: 147 EAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTIL 206

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  FC+ G +++A  ++ +M  +G K ++V++SCLI  + +   M  A     EM    +
Sbjct: 207 IGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL 266

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P+             AG  ++A+++ D M+  G +PD +  +TL
Sbjct: 267 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTL 311



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++   G  PD++TYNT++ G C   RL +A  L  ++    + P+  TFT LI 
Sbjct: 289 ALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 348

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C EG++D A  +F  ML +  + ++VTY+ LIDG  +  ++  A D++++M    I P
Sbjct: 349 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 408

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N              G+  +A    D M+  GI+P+
Sbjct: 409 NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 444



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 70/123 (56%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + PD+ITYNT+I GY   +++ +A +L   +   +++P+ +T+ +LI+ F   G + +A 
Sbjct: 476 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 535

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQL 142
            +F KM  KG + +  TY  +I+G+  + N K AF +++EM +       A    + + +
Sbjct: 536 WIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGTVQFVNI 595

Query: 143 YDS 145
            +S
Sbjct: 596 QNS 598



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D    +  ++  R + PD++T+N ++         + A+ L + +    LKP  +
Sbjct: 107 KALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIV 166

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++   C+ G  D A  +F +M + G   +V +++ LI G+ +   ++ A  +Y+EM
Sbjct: 167 TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 226

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               I P++             G+   AM     M   G++PDG++ + +
Sbjct: 227 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMV 276



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 18/153 (11%)

Query: 24  EPDIITYNTIICGYCS---LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           E +  T N ++  YC     +++D  +   EK  CV   P+ +T  +++DA  + G  + 
Sbjct: 92  EVNTYTLNIMVHNYCKALEFDKVDAVISEMEK-RCVF--PDVVTHNVMVDARFRAGDAEA 148

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A  +   M+ KG K  +VTY+ ++ G  +S     A++V++EM +  ++P++        
Sbjct: 149 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIG 208

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                G   EA+++Y  M   GI PD +  S L
Sbjct: 209 GFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 241



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IKE  +  A KL   +    ++PD++TYN +I G+     + EA  +FEK+    ++P+ 
Sbjct: 491 IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 550

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            T+  +I+     G   +A  +  +ML++G
Sbjct: 551 YTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+      + L   L +RG   +   Y+T+I G     + +EA+ L++K+     +PN
Sbjct: 338 LVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPN 397

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LID  C+EG++D+A  +  +M+ KG   N  TYS LI G+FK+ N + A  V++
Sbjct: 398 IVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWK 457

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM +NN  PN              G+  EAM ++  ML  G+ PD +  S++  + L ++
Sbjct: 458 EMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMI-HGLCNA 516

Query: 170 GSQE 173
           GS E
Sbjct: 517 GSVE 520



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +    KL   +  +G  P+ +TYNTII G C   +LD+AV L +++   +  PN
Sbjct: 268 LCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPN 327

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+   K+GR  D   + S + E+G  AN   YS LI G FK +  + A  +++
Sbjct: 328 DVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWK 387

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E    PNI             G+  EA ++   M+  G  P+    S+L     ++ 
Sbjct: 388 KMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTG 447

Query: 170 GSQE 173
            SQ+
Sbjct: 448 NSQK 451



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 5/157 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+++F ++  +  EPD+ TY T++ G C  +R+DEAV L +++      P+S+TF +
Sbjct: 204 VDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 263

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CK+G M   T +   M  KG   N VTY+ +I+G      +  A  + + M  + 
Sbjct: 264 LINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK 323

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLAD 163
             PN     T    L + +++ G   DG+ LLS+L +
Sbjct: 324 CVPNDVTYGT----LINGLVKQGRSVDGVHLLSSLEE 356



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 92/167 (55%), Gaps = 14/167 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  LD A ++  ++ ++G  P+  TY+++I G+       +A+++++++      PN
Sbjct: 408 LCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPN 467

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +++LI   C++G++ +A MM++ ML +G + +VV YS +I G   + +++    ++ 
Sbjct: 468 EICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFN 527

Query: 122 EM-CENN------ISPNIAGRP-------TEAMQLYDSMLRNGIMPD 154
           EM C+ +      ++ NI  R        + A+ L +SML  G  PD
Sbjct: 528 EMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPD 574



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 89/177 (50%), Gaps = 14/177 (7%)

Query: 1   MLIKECHLDAALKLF--GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           ++I+E     AL+ +  G      + P+++++N +I   C L  +D A+++F ++   + 
Sbjct: 160 VIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKC 219

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           +P+  T+  L+D  CKE R+D+A ++  +M  +G   + VT++ LI+G  K  +M     
Sbjct: 220 EPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTK 279

Query: 119 VYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + + M      PN            + G+  +A+ L D M+ +  +P+ +   TL +
Sbjct: 280 LVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLIN 336



 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 23/134 (17%)

Query: 8   LDAALKLFGQL--TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           ++  LKLF ++   +   +PD++TYN ++   C  N +  A+ L   +      P+ IT 
Sbjct: 519 VEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITC 578

Query: 66  TILIDA---------------------FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            I ++A                       K  R+  A  +   ML+K    N  T+  +I
Sbjct: 579 NIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERII 638

Query: 105 DGYFKSQNMKSAFD 118
               K + +++  D
Sbjct: 639 PELCKPKKVQAIID 652


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 18/182 (9%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  LD AL+LF  + ++ L PDI+TYNT+I G C    LD+A  L++ +   ++ PN +T
Sbjct: 414 EGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT 473

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ILID+ C++G+++DA     +M+ KG   N++TY+ +I GY +S N+       ++M 
Sbjct: 474 YSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 533

Query: 125 ENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            N +SP++    T            +A +L + M +  + PD      +  YN+  +G  
Sbjct: 534 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD------VVTYNMLINGFS 587

Query: 173 EH 174
            H
Sbjct: 588 VH 589



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  L  ++ +RG+ PD+ T+ T+I GYC   +LD+A+QLF+ +   +L+P+
Sbjct: 376 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 435

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  C++G +D A  ++  M  +    N VTYS LID + +   ++ AF   +
Sbjct: 436 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD 495

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    I PNI            +G  ++  +    M+ N + PD +  +TL
Sbjct: 496 EMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 547



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A     ++ ++G+ P+I+TYN+II GYC    + +  +  +K+   ++ P+ IT+ 
Sbjct: 486 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYN 545

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  + KE +M DA  + + M ++  + +VVTY+ LI+G+    N++ A  ++E+MC  
Sbjct: 546 TLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAK 605

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            I P+             AG   EA QL+D ML+ G  PD
Sbjct: 606 GIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 94/168 (55%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ ALK++ ++  RG++PD+++++ +I  +    ++D A+    ++ C  L P+ + +T+
Sbjct: 277 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 336

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC+ G M DA  +  +M+  G   +VVTY+ L++G  K + +  A  +  EM E  
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+            I G+  +A+QL+D+ML   + PD +  +TL D
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 444



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++   G  PD++TYNT++ G C   RL +A  L  ++    + P+  TFT LI 
Sbjct: 350 ALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 409

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C EG++D A  +F  ML +  + ++VTY+ LIDG  +  ++  A D++++M    I P
Sbjct: 410 GYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 469

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N              G+  +A    D M+  GI+P+
Sbjct: 470 NHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 505



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +AA+ L   +  +GL+P I+TYN+++ G C     D+A ++F+++    + P+  +FTIL
Sbjct: 208 EAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTIL 267

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  FC+ G +++A  ++ +M  +G K ++V++SCLI  + +   M  A     EM    +
Sbjct: 268 IGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGL 327

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P+             AG  ++A+++ D M+  G +PD +  +TL
Sbjct: 328 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTL 372



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D    +  ++  R + PD++T+N ++         + A+ L + +    LKP  +
Sbjct: 168 KALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIV 227

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++   C+ G  D A  +F +M + G   +V +++ LI G+ +   ++ A  +Y+EM
Sbjct: 228 TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM 287

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               I P++             G+   AM     M   G++PDG++ + +
Sbjct: 288 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMV 337



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 18/153 (11%)

Query: 24  EPDIITYNTIICGYCS---LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           E +  T N ++  YC     +++D  +   EK  CV   P+ +T  +++DA  + G  + 
Sbjct: 153 EVNTYTLNIMVHNYCKALEFDKVDAVISEMEK-RCVF--PDVVTHNVMVDARFRAGDAEA 209

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A  +   M+ KG K  +VTY+ ++ G  +S     A++V++EM +  ++P++        
Sbjct: 210 AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIG 269

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                G   EA+++Y  M   GI PD +  S L
Sbjct: 270 GFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 302



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IKE  +  A KL   +    ++PD++TYN +I G+     + EA  +FEK+    ++P+ 
Sbjct: 552 IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 611

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            T+  +I+     G   +A  +  +ML++G
Sbjct: 612 YTYMSMINGHVTAGNSKEAFQLHDEMLQRG 641


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML K    N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLID 325



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A KLF ++  + L P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG + + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDG 155
            M + NI   ++A           GR  +A ++   ML  G+ PD 
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDA 387



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A  +++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 237 EMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDAR 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 22/179 (12%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICG----------YCSLNRLDEAVQLFEKLTCV 56
           H+ +A  +  ++   G +P+ IT NT+I G          +C + +L +AV LF K+   
Sbjct: 112 HIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILE 171

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            + P+  TFTIL+D FCKEGR+ +A  + + M+ +G K  VVTY+ L+DGYF  + +  A
Sbjct: 172 NINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKA 231

Query: 117 FDVYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
             ++  M +  +SP+I                 EAM+L   M    I+P+ +  S+L D
Sbjct: 232 KSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLID 290



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 90/162 (55%), Gaps = 14/162 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L+K+  ++ A  +F  +   G+ PDI +Y+ +I G+C +  +DEA++L +++   Q+ P
Sbjct: 223 FLVKQ--VNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIP 280

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T++ LID  CK G++  A  +  +M ++G   N+VTYS ++D   K+  + +A  + 
Sbjct: 281 NVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALL 340

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
            +M    I PN+            +G+  +A ++++ +L  G
Sbjct: 341 TQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKG 382



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  ALKL  ++ DRG  P+I+TY++I+   C  +++D A+ L  ++    ++PN
Sbjct: 292 LCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPN 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILI   C+ G+++DA  +F  +L KG   NV TY+ +I G+        A  +  
Sbjct: 352 MYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLS 411

Query: 122 EMCENNISPN 131
           +M +N   PN
Sbjct: 412 KMEDNGCIPN 421



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +   +  +G++P ++TYN+++ GY  + ++++A  +F  +  + + P+  
Sbjct: 189 KEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQ 248

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++ILI+ FCK   MD+A  +  +M  K    NVVTYS LIDG  KS  +  A  + +EM
Sbjct: 249 SYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEM 308

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
            +    PNI    +             A+ L   M   GI P+
Sbjct: 309 HDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPN 351



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  Q+ ++G++P++ TY  +I G C   +L++A ++FE L       N
Sbjct: 327 LCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLN 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I  FC +G  D+A  + SKM + G   N  TY  +I   FK    + A  +  
Sbjct: 387 VYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLC 446

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           EM E N      GR      L  S+   G  P   LL
Sbjct: 447 EMIETNFD----GRVALTNDLIASIWVTGSSPGNSLL 479



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 87/160 (54%), Gaps = 12/160 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L  ++  + + P+++TY+++I G C   ++  A++L +++      PN +T++ 
Sbjct: 263 MDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSS 322

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++DA CK  ++D+A  + ++M  +G + N+ TY+ LI G  +S  ++ A  V+E++    
Sbjct: 323 ILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKG 382

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDG 155
            + N+             G   EA+ L   M  NG +P+ 
Sbjct: 383 HNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNA 422



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 22/178 (12%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF +L  +   P  I +N I+            + L +K+    +KPN +   I
Sbjct: 43  VDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG----------YFKSQNMKSAF 117
           LI++FC+ G +  A  + +K+L+ G K N +T + LI G          +     +K A 
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           D++ +M   NI+P++             GR  EA  +   M+  GI P  +  ++L D
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMD 220


>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 557

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 12/183 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD   K F ++   G+ P++I +  +I GY  +  LD A QL++ +      PN
Sbjct: 86  LCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSKIGNLDFAYQLYKDMCKSMHLPN 145

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI+ FCK G ++ A   F KMLE G   N   Y+ +IDG+FK  N+  A   + 
Sbjct: 146 VYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTSIIDGHFKKGNIDVAMKYFS 205

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM + +   +I             GR  + +++ + M+RNG+ PD ++L+TL   + ++ 
Sbjct: 206 EMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVVLTTLMHAHFKAG 265

Query: 170 GSQ 172
            ++
Sbjct: 266 NTK 268



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 46/194 (23%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---------------------- 59
           G  PDI+TYN++I GYC   +++EA    +++   + +                      
Sbjct: 2   GSLPDIVTYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFNGFCKRKMKEEV 61

Query: 60  ------------PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
                       PN IT+   ID  CK G +D     F +M + G   N++ ++CLIDGY
Sbjct: 62  FIYMGLMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGY 121

Query: 108 FKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDG 155
            K  N+  A+ +Y++MC++   PN+             G    A   +  ML  GIMP+ 
Sbjct: 122 SKIGNLDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNS 181

Query: 156 LLLSTLADYNLQSS 169
            + +++ D + +  
Sbjct: 182 TVYTSIIDGHFKKG 195



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 17/171 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K  +  AA  ++ +L +RG EPD +T +++I G C   R  +A   F K      K N 
Sbjct: 262 FKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYHDAKGYFCKE-----KANE 316

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++T LID  CKEG +D+   +  +M E G   +   Y+  I    +   +  AF V  +
Sbjct: 317 VSYTALIDGICKEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNK 376

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M E  I  ++             G   EA QL+D ML+ GI+PD ++   L
Sbjct: 377 MVEEGIDLDLLTYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDIL 427



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    LD  L++   +   GL PD +   T++  +        A  ++ +L     +P+
Sbjct: 226 LVNNGRLDKVLEVMEDMVRNGLAPDKVVLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPD 285

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T + LID  CK+GR  DA   F K      KAN V+Y+ LIDG  K  N+     V  
Sbjct: 286 AVTISSLIDGLCKDGRYHDAKGYFCK-----EKANEVSYTALIDGICKEGNLDEVERVVM 340

Query: 122 EMCENNISPN-------IA-----GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM E+   P+       IA     G+  EA ++ + M+  GI  D L  S+L  + L + 
Sbjct: 341 EMSESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLI-FGLANK 399

Query: 170 G 170
           G
Sbjct: 400 G 400



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 35/160 (21%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A +L+  +      P++ TY  +I G+C    L+ A   F K+  V + PNS  +T
Sbjct: 126 NLDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYT 185

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-------------------- 106
            +ID   K+G +D A   FS+M ++  + ++V Y  +I G                    
Sbjct: 186 SIIDGHFKKGNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRN 245

Query: 107 ---------------YFKSQNMKSAFDVYEEMCENNISPN 131
                          +FK+ N K+A+ VY E+      P+
Sbjct: 246 GLAPDKVVLTTLMHAHFKAGNTKAAYGVYRELLNRGFEPD 285



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 61/120 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +LD   ++  ++++ G  PD   Y + I   C   ++ EA ++  K+    +  + +
Sbjct: 328 KEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLL 387

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI     +G M +A  +F  ML++G   + + +  LI GY K  N  +   ++EEM
Sbjct: 388 TYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDILIRGYLKQDNPVAISHLHEEM 447



 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 50/91 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +  A K+  ++ + G++ D++TY+++I G  +   + EA QLF+ +    + P+
Sbjct: 361 LCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPD 420

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           S+ F ILI  + K+      + +  +M  +G
Sbjct: 421 SMVFDILIRGYLKQDNPVAISHLHEEMRRRG 451


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A + F  L+ +G  PD  TY T+I GY +   +DEA +L +++    L PN
Sbjct: 724 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 783

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK   +D A  +F K+ +KG   NVVTY+ LIDGY K  NM +AF + +
Sbjct: 784 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 843

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E  ISP++             G    +M+L + M++ G+    +   TL     ++S
Sbjct: 844 KMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTS 903

Query: 170 GSQE 173
              E
Sbjct: 904 NYNE 907



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLF-GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K+C +D A K+  G   +  L PD   Y  +I GYC   ++D+AV+L +++  + LK N 
Sbjct: 308 KQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNL 367

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
                LI+ +CK G + +A  + ++M++   K +  +Y+ L+DGY +  +   AF++ ++
Sbjct: 368 FICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDK 427

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M +  I P +             G   +A+Q++  M++ G+ PD +  STL D
Sbjct: 428 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLD 480



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A  +  ++ D  L+PD  +YNT++ GYC      EA  L +K+    ++P  +
Sbjct: 379 KRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVL 438

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+   C+ G  DDA  ++  M++ G   + V YS L+DG FK +N + A  +++++
Sbjct: 439 TYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDI 498

Query: 124 -----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 ++ I+ N         G+  EA +++D M   G  PDG+   TL D
Sbjct: 499 LARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 550



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  + + A  L+  +  RG     IT+NT+I G C + ++ EA ++F+K+  +   P+
Sbjct: 482 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 541

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            IT+  LID +CK                                     R+ + T + +
Sbjct: 542 GITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLT 601

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M  +G   N+VTY  LIDG+ K   +  AF  Y EM EN +S NI             G
Sbjct: 602 EMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLG 661

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  EA  L   M+ +G  PD
Sbjct: 662 RIDEANLLMQKMVDHGFFPD 681



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L P+ I YN  I G C   ++D+A + F  L+     P++ T+  LI  +   G +D+A 
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +  +ML +G   N+VTY+ LI+G  KS+N+  A  ++ ++ +  + PN+          
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 829

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G    A +L D M+  GI P  +  S L +
Sbjct: 830 CKIGNMDAAFKLKDKMIEEGISPSVVTYSALIN 862



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS- 62
           +E H   A  L  ++   G+EP ++TYNT++ G C +   D+A+Q++  +    + P+  
Sbjct: 414 REGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEV 473

Query: 63  ----------------------------------ITFTILIDAFCKEGRMDDATMMFSKM 88
                                             ITF  +I   CK G+M +A  +F KM
Sbjct: 474 GYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 533

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
            + G   + +TY  LIDGY K+ N+  AF V   M    ISP+I            + R 
Sbjct: 534 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRL 593

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E   L   M   G+ P+ +    L D
Sbjct: 594 VEXTDLLTEMGIRGLTPNIVTYGALID 620



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  ++ Q+   G+ PD+   + ++  +C   ++DEA    +K+  + ++PN
Sbjct: 201 LVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 260

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ +   G ++ A  +   M EKG   NVVTY+ LI GY K   M  A  V  
Sbjct: 261 IVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLR 320

Query: 122 EMCEN-NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E   + P+              G+  +A++L D MLR G+  +  + ++L +
Sbjct: 321 GMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 15/172 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L     L  ++  RGL P+I+TY  +I G+C    LD+A   + ++T   L  N
Sbjct: 587 LFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSAN 646

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I  + ++    + GR+D+A ++  KM++ G   +   + C +    +   ++   D  +
Sbjct: 647 IIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD---HECFLKSDIRYAAIQKIADSLD 703

Query: 122 EMCE-----NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E C+     NNI  NIA       G+  +A + +  +   G +PD     TL
Sbjct: 704 ESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTL 755



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 66/123 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F  +   G  P + + N+++           A  +++++  V + P+    +I+++
Sbjct: 175 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 234

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFCK+G++D+A     KM   G + N+VTY  LI+GY    ++++A  V + M E  +S 
Sbjct: 235 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 294

Query: 131 NIA 133
           N+ 
Sbjct: 295 NVV 297


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A +LF ++T+RG+ PD  T+ T+I GY     +++AV LFE +    LKP+
Sbjct: 317 LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD 376

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID FCK   M+    +++ M+ +    N ++Y  LI+GY     +  AF +++
Sbjct: 377 VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 436

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E      I            AG   +A +   +ML  GI+PDG+  +TL +
Sbjct: 437 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLIN 490



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  ALK+  ++ ++G   D++TYNTI+ G C    L EA +LF ++T   + P+  TFT 
Sbjct: 288 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 347

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ + K+G M+ A  +F  M+++  K +VVTY+ LIDG+ K   M+   +++ +M    
Sbjct: 348 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 407

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNG 150
           I PN              G  +EA +L+D M+  G
Sbjct: 408 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 442



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 68/111 (61%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD ITYNT+I G+     +D A  L  K+    L P+ IT+ ++++ F ++GRM +
Sbjct: 476 KGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQE 535

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           A ++  KM+E+G   +  TY+ LI+G+    N+K AF V++EM +    P+
Sbjct: 536 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 18/159 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---PNSITFTI 67
           A +L+ ++ ++G E  IIT NTI+ GYC   R   AV+  E L+ + LK   P+ IT+  
Sbjct: 431 AFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPDGITYNT 487

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ F KE  MD A  + +KM   G   +V+TY+ +++G+ +   M+ A  +  +M E  
Sbjct: 488 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 547

Query: 128 ISPN-------IAGRPT-----EAMQLYDSMLRNGIMPD 154
           ++P+       I G  T     EA +++D ML+ G +PD
Sbjct: 548 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 100/179 (55%), Gaps = 17/179 (9%)

Query: 1   MLIKECHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCV 56
           +L++ C  D    A ++F ++  +G+ PD+++++ +I G  S N  LD+A++ F  +   
Sbjct: 208 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI-GLLSKNGCLDQALKYFRDMKNA 266

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L P+++ +TILI  FC+ G M +A  +  +MLE+G   +VVTY+ +++G  K + +  A
Sbjct: 267 GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEA 326

Query: 117 FDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +++ EM E  + P+              G   +A+ L++ M++  + PD +  +TL D
Sbjct: 327 DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 385



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++        + ++G+ PD++TYNT+I  YC    L+EA +L + ++   LKP 
Sbjct: 107 LCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPC 166

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+  CK G+   A  +  +ML+ G   +  TY+ L+    ++ NM  A  +++
Sbjct: 167 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 226

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P++             G   +A++ +  M   G+ PD ++ + L
Sbjct: 227 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 278



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +L+  +  R + P+ I+Y  +I GYC++  + EA +L++++     +   I
Sbjct: 389 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 448

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   ++  +C+ G    A    S ML KG   + +TY+ LI+G+ K +NM  AF +  +M
Sbjct: 449 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 508

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             + + P++             GR  EA  +   M+  G+ PD    ++L + ++  +  
Sbjct: 509 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 568

Query: 172 QE 173
           +E
Sbjct: 569 KE 570



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D A +++ ++   G++ ++ T N +I   C   +++        +    + P+
Sbjct: 72  LVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD 131

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+A+C++G +++A  +   M  KG K  V TY+ +I+G  K+     A  V +
Sbjct: 132 VVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLD 191

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  +SP+ A                +A +++D M   G++PD +  S L
Sbjct: 192 EMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 243



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  L  +GL   I   N+++ G   +  +D A ++++++    ++ N  T  I+I+A CK
Sbjct: 50  FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK 109

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
             ++++     S M EKG   +VVTY+ LI+ Y +   ++ AF++ + M    + P +  
Sbjct: 110 NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT 169

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPD 154
                      G+   A  + D ML+ G+ PD
Sbjct: 170 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 201



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE ++D A  L  ++ + GL PD+ITYN I+ G+    R+ EA  +  K+    + P+
Sbjct: 492 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 551

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+T LI+    +  + +A  +  +ML++G
Sbjct: 552 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 582



 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           + ++ ++  Y    +L E  + F  L    L  +      L+    K G +D A  ++ +
Sbjct: 28  LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQE 87

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           ++  G + NV T + +I+   K+Q +++      +M E  + P++             G 
Sbjct: 88  VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 147

Query: 136 PTEAMQLYDSMLRNGIMP 153
             EA +L DSM   G+ P
Sbjct: 148 LEEAFELMDSMSGKGLKP 165


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L   M   G+ PD +  +TL D
Sbjct: 274 LSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLID 325



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  N+ +AF+   
Sbjct: 282 LITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRX 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDG 155
            M E NI   ++A           GR  +A ++   ML  G+ PD 
Sbjct: 342 RMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDA 387



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    LB A +   ++    ++ +
Sbjct: 292 LCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M   ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM    + PN              GR   AM++Y  ML   ++PD
Sbjct: 237 EMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 58/103 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +LB A +   ++ +  +  D + Y  +I G C   R  +A ++   +  V LKP++ 
Sbjct: 329 KEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAX 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+   LD A+K+F  +  +G++P I+ YN +I G+C   ++ +A+    K+  V   P+
Sbjct: 491 FIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPD 550

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ +ID + K+  M  A  MF +M++   K NV+TY+ LI+G+ K  +M  A  V+ 
Sbjct: 551 EYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFR 610

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M   ++ PN+            AG+P +A  +++ ML NG  P+
Sbjct: 611 GMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPN 655



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K     A   L  ++ DR ++PD+  + T++ G+     LDEA+++F+ +    + P 
Sbjct: 456 LCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPG 515

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I  FCK G+M DA    +KM       +  TYS +IDGY K  +M SA  ++ 
Sbjct: 516 IVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFG 575

Query: 122 EMCENNISPNI 132
           +M ++   PN+
Sbjct: 576 QMMKHKFKPNV 586



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 13/156 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ + G  PDI TYNT+I   C   R+ EA +  EK     L PN  ++T L+ A+CK+G
Sbjct: 331 RMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQG 390

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP 136
               A  M  ++ E G K ++V+Y   I G      +  A  V E+M E  + P+     
Sbjct: 391 DYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPD----- 445

Query: 137 TEAMQLYDSML----RNGIMPD-GLLLSTLADYNLQ 167
               Q+Y+ ++    +NG  P   LLLS + D N+Q
Sbjct: 446 ---AQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQ 478



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+  + +ALK+FGQ+     +P++ITY ++I G+C    +  A ++F  +    L PN 
Sbjct: 562 VKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNV 621

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           +T+T L+  F K G+ + AT +F  ML  G   N  T+  LI+G
Sbjct: 622 VTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLING 665



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 79/154 (51%), Gaps = 13/154 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ AA  LF ++ + G +PD+++Y   I G      +D A+ + EK+    + P++  + 
Sbjct: 392 YVKAAGMLF-RIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYN 450

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L+   CK GR     ++ S+ML++  + +V  ++ L+DG+ ++  +  A  +++ +   
Sbjct: 451 VLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRK 510

Query: 127 NISPNIAGRPTEAMQLYDSMLRN----GIMPDGL 156
            + P I G        Y++M++     G M D L
Sbjct: 511 GVDPGIVG--------YNAMIKGFCKFGKMTDAL 536



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   +L      +G  P ++ YN II GYC    L  A +  ++L    + P   T+  
Sbjct: 217 IEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGA 276

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FCK G  +    + ++M  +G   NV  ++ +ID  FK   +  A +    M E  
Sbjct: 277 LINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMG 336

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             P+I             GR  EA +  +     G++P+
Sbjct: 337 CGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPN 375



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 16/188 (8%)

Query: 2   LIKECHLDAALKLFGQL--TDRGLEPDIITYNT--IICGYCSLNRLDEAVQLFEKLTCVQ 57
           L+K   +D AL+L+ ++  TD G    +  Y T  ++ G C+L +++E  +L +      
Sbjct: 172 LVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKG 231

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             P+ + + ++ID +CK+G +  AT    ++  KG    V TY  LI+G+ K+   ++  
Sbjct: 232 CVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVD 291

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            +  EM    ++ N+             G  T+A +    M   G  PD    +T+ +++
Sbjct: 292 QLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFS 351

Query: 166 LQSSGSQE 173
            +    +E
Sbjct: 352 CKGGRIKE 359



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A +   +L  +G+ P + TY  +I G+C     +   QL  ++    L  N  
Sbjct: 248 KKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVK 307

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  +IDA  K G +  A     +M E G   ++ TY+ +I+   K   +K A +  E+ 
Sbjct: 308 VFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKA 367

Query: 124 CENNISPN 131
            E  + PN
Sbjct: 368 KERGLLPN 375



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    +A  +L  ++  RGL  ++  +N +I        + +A +   ++  +   P+  
Sbjct: 283 KAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDIT 342

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I+  CK GR+ +A     K  E+G   N  +Y+ L+  Y K  +   A  +   +
Sbjct: 343 TYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRI 402

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E    P+            + G    A+ + + M+  G+ PD  + + L
Sbjct: 403 AEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVL 452


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ + G  PDI+ YN II   C   R+++A+  F+++    ++PN +T+T L++
Sbjct: 174 AVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVN 233

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR +DA  +   M+++    NV+TYS L+D + K+  +  A +++EEM   +I P
Sbjct: 234 GLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDP 293

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I              R  EA Q++D M+  G  PD +  +TL
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTL 336



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL + G++   G EPD +T  +++ G+C  NR+ +AV L +K+  +  +P+ + + 
Sbjct: 135 QVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYN 194

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID+ CK  R++DA   F ++  KG + NVVTY+ L++G   S     A  +  +M + 
Sbjct: 195 AIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKR 254

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I+PN+             G+  EA ++++ M+R  I PD +  S+L
Sbjct: 255 KITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSL 301



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 79/131 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   +  A ++F ++    ++PDI+TY+++I G C  +R+DEA Q+F+ +      P+
Sbjct: 270 FVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPD 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LI+ FCK  R++D   +F KM ++G   N VTY+ LI G+F+  ++  A + + 
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFS 389

Query: 122 EMCENNISPNI 132
           +M    +SP+I
Sbjct: 390 QMDSFGVSPDI 400



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL  F ++  +G+ P+++TY  ++ G C+  R ++A +L   +   ++ PN
Sbjct: 200 LCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPN 259

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+DAF K G++ +A  +F +M+      ++VTYS LI+G      +  A  +++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 319

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P++            A R  + M+L+  M + G++ + +  +TL
Sbjct: 320 LMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTL 371



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K    D  + L  ++   G+  D+ T+N +I  +C   ++  A+ +  K+  +  +P+
Sbjct: 95  IVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPD 154

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T   L++ FC+  R+ DA  +  KM+E G + ++V Y+ +ID   K++ +  A D ++
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFK 214

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+    I PN+            +GR  +A +L   M++  I P+ +  S L D
Sbjct: 215 EIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLD 268



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 90/167 (53%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A ++F  +  +G  PD+++YNT+I G+C   R+++ ++LF K++   L  N++T+ 
Sbjct: 310 RIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYN 369

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F + G +D A   FS+M   G   ++ TY+ L+ G   +  ++ A  ++E+M ++
Sbjct: 370 TLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKS 429

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +I             G+  +A  L+ S+   G+ PD +  +T+
Sbjct: 430 EMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTM 476



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  +KLF +++ RGL  + +TYNT+I G+  +  +D+A + F ++    + P+  
Sbjct: 342 KAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIW 401

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+   C  G ++ A ++F  M +     ++VTY+ +I G  K+  ++ A+ ++  +
Sbjct: 402 TYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSL 461

Query: 124 CENNISPNI-------AGRPTEAMQ-----LYDSMLRNGIMPDGLLL 158
               + P+I       +G  T+ +Q     LY  M + G+M +  +L
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSML 508



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A + F Q+   G+ PDI TYN ++ G C    L++A+ +FE +   ++  + +T+T 
Sbjct: 381 VDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTT 440

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CK G+++DA  +F  +  KG K ++VTY+ ++ G            +Y +M +  
Sbjct: 441 VIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEG 500

Query: 128 ISPNIA------GRPTEAMQLYDSMLRNGIMP 153
           +  N +      G  T + +L   ML  G  P
Sbjct: 501 LMKNDSMLCLGDGDITISAELIKKMLSCGYAP 532


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+      + L   L +RG   +   Y+T+I G     + +EA+ L++K+     +PN
Sbjct: 322 LVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPN 381

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LID  C+EG++D+A  +  +M+ KG   N  TYS LI G+FK+ N + A  V++
Sbjct: 382 IVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWK 441

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM +NN  PN              G+  EAM ++  ML  G+ PD +  S++  + L ++
Sbjct: 442 EMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMI-HGLCNA 500

Query: 170 GSQE 173
           GS E
Sbjct: 501 GSVE 504



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +    KL   +  +G  P+ +TYNTII G C   +LD+AV L +++   +  PN
Sbjct: 252 LCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPN 311

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+   K+GR  D   + S + E+G  AN   YS LI G FK +  + A  +++
Sbjct: 312 DVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWK 371

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E    PNI             G+  EA ++   M+  G  P+    S+L     ++ 
Sbjct: 372 KMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTG 431

Query: 170 GSQE 173
            SQ+
Sbjct: 432 NSQK 435



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 5/157 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+++F ++  +  EPD+ TY T++ G C  +R+DEAV L +++      P+S+TF +
Sbjct: 188 VDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 247

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CK+G M   T +   M  KG   N VTY+ +I+G      +  A  + + M  + 
Sbjct: 248 LINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK 307

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLAD 163
             PN     T    L + +++ G   DG+ LLS+L +
Sbjct: 308 CVPNDVTYGT----LINGLVKQGRSVDGVHLLSSLEE 340



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 92/167 (55%), Gaps = 14/167 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  LD A ++  ++ ++G  P+  TY+++I G+       +A+++++++      PN
Sbjct: 392 LCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPN 451

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +++LI   C++G++ +A MM++ ML +G + +VV YS +I G   + +++    ++ 
Sbjct: 452 EICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFN 511

Query: 122 EM-CENN------ISPNIAGRP-------TEAMQLYDSMLRNGIMPD 154
           EM C+ +      ++ NI  R        + A+ L +SML  G  PD
Sbjct: 512 EMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPD 558



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 89/177 (50%), Gaps = 14/177 (7%)

Query: 1   MLIKECHLDAALKLF--GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           ++I+E     AL+ +  G      + P+++++N +I   C L  +D A+++F ++   + 
Sbjct: 144 VIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKC 203

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           +P+  T+  L+D  CKE R+D+A ++  +M  +G   + VT++ LI+G  K  +M     
Sbjct: 204 EPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTK 263

Query: 119 VYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + + M      PN            + G+  +A+ L D M+ +  +P+ +   TL +
Sbjct: 264 LVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLIN 320



 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 23/134 (17%)

Query: 8   LDAALKLFGQL--TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           ++  LKLF ++   +   +PD++TYN ++   C  N +  A+ L   +      P+ IT 
Sbjct: 503 VEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITC 562

Query: 66  TILIDA---------------------FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            I ++A                       K  R+  A  +   ML+K    N  T+  +I
Sbjct: 563 NIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERII 622

Query: 105 DGYFKSQNMKSAFD 118
               K + +++  D
Sbjct: 623 PELCKPKKVQAIID 636


>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 733

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 75/125 (60%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A++ +  +  RG+ PD++TYNT+I GY    ++DEA +LF ++    + PN I+FT
Sbjct: 242 RLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISFT 301

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++  +   GR+DDA  +F +M   G K NVVT+S L+ G   ++ M  A DV  EM E 
Sbjct: 302 TMLKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVER 361

Query: 127 NISPN 131
            I+P 
Sbjct: 362 YIAPK 366



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++KLF ++ + GL+  + +Y+ +        R   A + +  +    + P   TF IL+ 
Sbjct: 176 SVKLFKKMKELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAMLLEGVDPTRHTFNILLW 235

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                 R+D A   +  M  +G   +VVTY+ LI+GYF+ + +  A  ++ EM   +I P
Sbjct: 236 GMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVP 295

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+            AGR  +A+++++ M   G+ P+ +  STL
Sbjct: 296 NVISFTTMLKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTL 338



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 21/178 (11%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL--TCVQLKPN 61
           K   LDAA  +   +    +  +   Y  +I  +C  N  D+A +L +KL    + L+P 
Sbjct: 380 KAGDLDAAADVLKAMVRLSIPTEAGHYGVLIESFCKANVYDKAEKLLDKLIEKEIVLRPQ 439

Query: 62  SIT------FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           + +      + ++I   C+ GR   A   F ++L+KG + + V ++ LI G+ K  N  S
Sbjct: 440 NDSEMEPSAYNLMIGYLCEHGRTGKAETFFRQLLKKGVQ-DSVAFNNLIRGHSKEGNPDS 498

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           AF++ + M    ++ ++             G P +A    D ML +G +P+  L  ++
Sbjct: 499 AFEIMKIMGRRGVARDVDSYRLLIESYLRKGEPADAKTALDGMLESGHLPESSLYRSV 556



 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  LID++ + G + ++  +F KM E G    V +Y  L     +      A   Y  M
Sbjct: 159 AFVSLIDSYGRAGIVQESVKLFKKMKELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAM 218

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P             ++ R   A++ Y+ M   GI+PD +  +TL
Sbjct: 219 LLEGVDPTRHTFNILLWGMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTL 268



 Score = 38.9 bits (89), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 23/151 (15%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE + D+A ++   +  RG+  D+ +Y  +I  Y       +A    + +      P S 
Sbjct: 492 KEGNPDSAFEIMKIMGRRGVARDVDSYRLLIESYLRKGEPADAKTALDGMLESGHLPESS 551

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  ++++   +GR+  A+ +   M+EKG K                +NM     + E +
Sbjct: 552 LYRSVMESLFDDGRVQTASRVMKSMVEKGAK----------------ENMDLVLKILEAL 595

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
                   + G   EA+   D ++ NG  PD
Sbjct: 596 L-------LRGHVEEALGRIDLLMHNGCEPD 619


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 23/183 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LDAA  +F     +G  PDIIT+NT+I GYC   R+D+ ++L  ++T   L  N+I
Sbjct: 370 KQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTI 429

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI  FC+ G ++ A  +  +M+  G   NVVT + L+DG   +  +K A ++++ M
Sbjct: 430 TYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAM 489

Query: 124 CE-----------NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +           N + P++             G+  EA +LY+ M   GI+PD +  S+
Sbjct: 490 QKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 549

Query: 161 LAD 163
           + D
Sbjct: 550 MID 552



 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 78/130 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI E     A +L+ ++  RG+ PD ITY+++I G C  +RLDEA Q+F+ +      P+
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPD 578

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI  +CK G +DD   +F +M ++G  A+ +TY  LI G+ K  N+  A D+++
Sbjct: 579 VVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQ 638

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 639 EMISSGVYPD 648



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 17/160 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL  FG++T  G  P ++T+NT++ G C  +R+ EA+ LF ++     KPN +TFT 
Sbjct: 132 LPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMC----KPNVVTFTT 187

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           L++  C+EGR+ +A  +  +MLE G + N +TY  ++DG  K  +  SA ++  +M E +
Sbjct: 188 LMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 247

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +I PN+             GR ++A  L+  M    I PD
Sbjct: 248 HIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPD 287



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L +E  +  A+ L  ++ + GL+P+ ITY TI+ G C +     A+ L  K+  V  + P
Sbjct: 192 LCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIP 251

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + +  +ID   K+GR  DA  +F +M EK    ++VTY+C+I+G+  S     A  + 
Sbjct: 252 NVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLL 311

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +EM E  I+P++             G+  EA +LYD ML   I+P  +  S++ D
Sbjct: 312 QEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMID 366



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++  R + P  +TY+++I G+C  NRLD A  +F         P+
Sbjct: 333 FVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPD 392

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  LI  +C+  R+DD   +  +M E G  AN +TY+ LI G+ +  ++ +A D+ +
Sbjct: 393 IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQ 452

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM  + + PN+    T    L D +  NG + D L
Sbjct: 453 EMISSGVCPNVVTCNT----LLDGLCDNGKLKDAL 483



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 20/156 (12%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPD+ TYN +ICG  +  +  EA +L+E++    + P++IT++ +ID  CK+ R+D+A
Sbjct: 504 GVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP----------- 130
           T MF  M  K    +VVT++ LI GY K+  +    +++ EM +  I             
Sbjct: 564 TQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYG 623

Query: 131 -----NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                NI G    A+ ++  M+ +G+ PD + +  +
Sbjct: 624 FRKVDNIDG----ALDIFQEMISSGVYPDTITIRNM 655



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A  LF ++ ++ + PDI+TYN +I G+C   R  +A QL +++   ++ P+
Sbjct: 263 LWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPD 322

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LI+AF KEG+  +A  ++ +ML +    + VTYS +IDG+ K   + +A  ++ 
Sbjct: 323 VVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFY 382

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  SP+I            A R  + ++L   M   G++ + +  +TL
Sbjct: 383 LTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTL 434



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ LFG +      P +I +  ++     + R D  + L +K+  +++  N+ +FTI
Sbjct: 62  LDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTI 121

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  FC   ++  A   F K+ + G    VVT++ L+ G      +  A D++ +MC+ N
Sbjct: 122 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPN 181

Query: 128 ISPNIA--------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             GR  EA+ L D ML +G+ P+ +   T+ D
Sbjct: 182 VVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVD 225



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 67/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A ++F  +  +   PD++T+NT+I GYC    +D+ ++LF ++    +  +
Sbjct: 554 LCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVAD 613

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI  F K   +D A  +F +M+  G   + +T   ++ G +  + ++ A  + E
Sbjct: 614 AITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLE 673

Query: 122 EM 123
           ++
Sbjct: 674 DL 675


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++   KL G++  +G+EPD  TYN +I G C + +LDEAV L+ +     L PN  
Sbjct: 605 KEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVY 664

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ++ID +CK  ++++   +F+++L +  + N V Y+ LI  Y ++ N   AF ++++M
Sbjct: 665 TYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDM 724

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               I P  A            GR  +A  L D M + G++P+
Sbjct: 725 RSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPN 767



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L+ +  +F +   +G+ PD+  ++T I  +C   ++++A+QLF  +  + + PN
Sbjct: 289 LVKANELEKSYWVF-ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPN 347

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK G +D+A     KM++ G  A ++TYS LI+G  K +    A  V +
Sbjct: 348 VVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLK 407

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E  E   +PN              G   +A+++   M+  GI P+ + L+++
Sbjct: 408 ETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSI 459



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++  A++L  ++ +RG   D ITYNT+I G C   +++E  +L  ++    ++P+
Sbjct: 568 LCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD 627

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ +LI   C+ G++D+A  ++++   +    NV TY  +IDGY K+  ++    ++ 
Sbjct: 628 TFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFT 687

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E+   N+  N              G   EA +L+D M   GI P     S+L
Sbjct: 688 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 739



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KLF +L  + LE + + YNT+I  YC      EA +L + +    + P + T++ LI   
Sbjct: 684 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGM 743

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN- 131
           C  GRM+DA  +  +M ++G   NVV Y+ LI GY K   M    +V +EM   +I PN 
Sbjct: 744 CNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNK 803

Query: 132 -----------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       +G    A +L   M+  GI+PD +  + L +
Sbjct: 804 ITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTN 846



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 68/121 (56%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL   +  +G+ P   TY+++I G C++ R+++A  L +++    L PN + +T LI 
Sbjct: 717 AFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIG 776

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK G+MD    +  +M       N +TY+ +IDGY KS +MK+A  +  EM    I P
Sbjct: 777 GYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVP 836

Query: 131 N 131
           +
Sbjct: 837 D 837



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 47/198 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL----------------------- 40
           K  +L  AL++ G +  +G+ P+ +T N+II G+C +                       
Sbjct: 430 KMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG 489

Query: 41  ------------NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                       +R + A++   ++    ++PN    T L+   CKEG+  DA  ++ ++
Sbjct: 490 AFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRL 549

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGRP 136
           LEKG  AN+VT + LI G  K+ NM+ A  + ++M E     + I+ N         G+ 
Sbjct: 550 LEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKV 609

Query: 137 TEAMQLYDSMLRNGIMPD 154
            E  +L   M++ GI PD
Sbjct: 610 EEGFKLRGEMVKQGIEPD 627



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 60/103 (58%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++   GL P+++ Y  +I GYC L ++D+ V + ++++   + PN IT+T++ID + 
Sbjct: 755 LIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYS 814

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           K G M  A  +  +M+ KG   + VTY+ L +G+ K   ++  
Sbjct: 815 KSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEG 857



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A  +  +  ++G  P+ + YNT+I GYC +  L +A+++   +    + PN
Sbjct: 393 LMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPN 452

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T   +I  FCK G+M+ A  +  +ML +G   N   ++ +I     +   +SA     
Sbjct: 453 SVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLR 512

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           EM   N+ PN              G+ ++A++L+  +L  G 
Sbjct: 513 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGF 554



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A +   ++   G+   +ITY+ +I G   L + +EA  + ++       PN
Sbjct: 358 LCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPN 417

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LID +CK G + DA  +   M+ KG   N VT + +I G+ K   M+ A  + E
Sbjct: 418 EVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILE 477

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           EM     S N            +  R   A++    ML   + P+  LL+TL 
Sbjct: 478 EMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLV 530



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A++L+ +L ++G   +++T N +I G C    + EAV+L +K+       +
Sbjct: 533 LCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD 592

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CKEG++++   +  +M+++G + +  TY+ LI G  +   +  A +++ 
Sbjct: 593 KITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWN 652

Query: 122 EMCENNISPNI 132
           E    ++ PN+
Sbjct: 653 ECKSRDLVPNV 663



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             ++AL+   ++  R + P+     T++ G C   +  +AV+L+ +L       N +T  
Sbjct: 503 RFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTN 562

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   CK G M +A  +  KMLE+G   + +TY+ LI G  K   ++  F +  EM + 
Sbjct: 563 ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ 622

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            I P+              G+  EA+ L++      ++P+
Sbjct: 623 GIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 662



 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE 51
           K   +  A KL  ++  +G+ PD +TYN +  G+C   +++E   L E
Sbjct: 815 KSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAE 862


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P  ++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+   KE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M R G+ PD +  +TL D
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLID 325



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +   M  KG K + +TY+ LIDG  K  ++ SAF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRK 341

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ PD
Sbjct: 342 RMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPD 386



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 177 AVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L   ++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G   +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +   ++    +  D + Y  +I G C   R  +A ++  ++  V L P++ 
Sbjct: 329 KEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTG 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A + F  L+ +G  PD  TY T+I GY +   +DEA +L +++    L PN
Sbjct: 690 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 749

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK   +D A  +F K+ +KG   NVVTY+ LIDGY K  NM +AF + +
Sbjct: 750 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 809

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMP 153
           +M E  ISP+I     E++    SM   GI+P
Sbjct: 810 KMIEEGISPSIQCNLLESV----SMWLVGILP 837



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLF-GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K+C +D A K+  G   +  L PD   Y  +I GYC   ++D+AV+L +++  + LK N 
Sbjct: 274 KQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNL 333

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
                LI+ +CK G + +A  + ++M++   K +  +Y+ L+DGY +  +   AF++ ++
Sbjct: 334 FICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDK 393

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M +  I P +             G   +A+Q++  M++ G+ PD +  STL D
Sbjct: 394 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLD 446



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A  +  ++ D  L+PD  +YNT++ GYC      EA  L +K+    ++P  +
Sbjct: 345 KRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVL 404

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+   C+ G  DDA  ++  M+++G   + V YS L+DG FK +N + A  +++++
Sbjct: 405 TYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDI 464

Query: 124 -----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 ++ I+ N         G+  EA +++D M   G  PDG+   TL D
Sbjct: 465 LARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 516



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  + + A  L+  +  RG     IT+NT+I G C + ++ EA ++F+K+  +   P+
Sbjct: 448 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 507

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            IT+  LID +CK                                     R+ + T + +
Sbjct: 508 GITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLT 567

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M  +G   N+VTY  LIDG+ K   +  AF  Y EM EN +S NI             G
Sbjct: 568 EMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLG 627

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  EA  L   M+ +G  PD
Sbjct: 628 RIDEANLLMQKMVDHGFFPD 647



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D AL+++  +  RG+ PD + Y+T++ G   +   + A  L++ +       + ITF  
Sbjct: 419 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 478

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CK G+M +A  +F KM + G   + +TY  LIDGY K+ N+  AF V   M    
Sbjct: 479 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 538

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ISP+I            + R  E   L   M   G+ P+ +    L D
Sbjct: 539 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALID 586



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 12/143 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L P+ I YN  I G C   ++D+A + F  L+     P++ T+  LI  +   G +D+A 
Sbjct: 676 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 735

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +  +ML +G   N+VTY+ LI+G  KS+N+  A  ++ ++ +  + PN+          
Sbjct: 736 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 795

Query: 134 ---GRPTEAMQLYDSMLRNGIMP 153
              G    A +L D M+  GI P
Sbjct: 796 CKIGNMDAAFKLKDKMIEEGISP 818



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  ++ Q+   G+ PD+   + ++  +C   ++DEA    +K+  + ++PN
Sbjct: 167 LVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 226

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ +   G ++ A  +   M EKG   NVVTY+ LI GY K   M  A  V  
Sbjct: 227 IVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLR 286

Query: 122 EMCEN-NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E   + P+              G+  +A++L D MLR G+  +  + ++L +
Sbjct: 287 GMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 341



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 55/183 (30%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--------- 54
           KE  LD A   + ++T+ GL  +II  +T++ G   L R+DEA  L +K+          
Sbjct: 590 KEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHE 649

Query: 55  ----------CVQ-------------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                      +Q             L PN+I + I I   CK G++DDA   FS +  K
Sbjct: 650 CFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK 709

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGI 151
           G   +  TY  LI GY                       + AG   EA +L D MLR G+
Sbjct: 710 GFVPDNFTYCTLIHGY-----------------------SAAGNVDEAFRLRDEMLRRGL 746

Query: 152 MPD 154
           +P+
Sbjct: 747 VPN 749



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 15/172 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L     L  ++  RGL P+I+TY  +I G+C    LD+A   + ++T   L  N
Sbjct: 553 LFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSAN 612

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I  + ++    + GR+D+A ++  KM++ G   +   + C +    +   ++   D  +
Sbjct: 613 IIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD---HECFLKSDIRYAAIQKIADSLD 669

Query: 122 EMCE-----NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E C+     NNI  NIA       G+  +A + +  +   G +PD     TL
Sbjct: 670 ESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTL 721



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 66/123 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F  +   G  P + + N+++           A  +++++  V + P+    +I+++
Sbjct: 141 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 200

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFCK+G++D+A     KM   G + N+VTY  LI+GY    ++++A  V + M E  +S 
Sbjct: 201 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 260

Query: 131 NIA 133
           N+ 
Sbjct: 261 NVV 263


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 13/178 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  + + PDI++YNT+I G C   +L EAV L  ++      PNS+T T L+D
Sbjct: 17  AMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMD 76

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+GRMD+A  +   M +KG  A+VV Y  LI G+  + N+    ++++EM    IS 
Sbjct: 77  GLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 136

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           N+             G+  EA  + ++M  +GI PD +  + L D  L   G   H +
Sbjct: 137 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID-GLCKDGRATHAM 193



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 14/147 (9%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + + G+ PD++TY  +I G C   R   A+ L   +     +P+++T+ +L+   CKEG 
Sbjct: 164 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 223

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--ENNISPNI--- 132
           + DA  +   M+EKG KA+VVTY+ L+ G      +  A  ++  M   EN + PN+   
Sbjct: 224 VIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF 283

Query: 133 ---------AGRPTEAMQLYDSMLRNG 150
                     GR T+A++++  M++ G
Sbjct: 284 NMLIGGLCKEGRLTKAVKIHRKMVKKG 310



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 12/155 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD   +LF ++  +G+  +++TY+ ++ G C L +  EA  +   +    + P+ +T+T
Sbjct: 118 NLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYT 177

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK+GR   A  + + M+EKG + + VTY+ L+ G  K   +  AF +   M E 
Sbjct: 178 GLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK 237

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRN 149
               ++             G+  EA++L++SM  N
Sbjct: 238 GKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 272



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 53/222 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQ 57
           L KE  +  A K+   + ++G + D++TYNT++ G C   ++DEA++LF  +     C  
Sbjct: 218 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENC-- 275

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY----------------- 100
           L+PN  TF +LI   CKEGR+  A  +  KM++KG   N+VTY                 
Sbjct: 276 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 335

Query: 101 ------------------SCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
                             S LIDG+ K + +  A  ++ EM  + ++P +          
Sbjct: 336 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 395

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
              G   +A  L+  M      PD +  +T+ D  L++   Q
Sbjct: 396 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQ 437



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A+K+  ++  +G   +++TYN ++ G     ++ EA++L++++  +   PN
Sbjct: 290 LCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPN 349

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T++ILID FCK   ++ A  +F +M   G    +  Y+ L+    K  +++ A  +++
Sbjct: 350 SFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQ 409

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM   N  P+I            AG      +L   M+  G+ PD L  STL +
Sbjct: 410 EMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN 463



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A+ L   + ++G EP  +TYN ++ G C    + +A ++   +     K +
Sbjct: 183 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 242

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML--EKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            +T+  L+   C +G++D+A  +F+ M   E   + NV T++ LI G  K   +  A  +
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302

Query: 120 YEEM-----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + +M     C N ++ N+       AG+  EAM+L+  +L  G +P+    S L D
Sbjct: 303 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILID 358



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  LF ++   GL P +  YNT++   C    L++A  LF+++     +P+ I+F  
Sbjct: 366 LNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNT 425

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   K G       +  KM+E G + + +T+S LI+   K   +  A    E M  + 
Sbjct: 426 MIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 485

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +P+              G  TE + L   M   G + D  ++ST+
Sbjct: 486 FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTI 531



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ A  LF ++ +   EPDII++NT+I G           +L  K+  + L+P+
Sbjct: 395 LCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPD 454

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TF+ LI+   K G +D+A     +M+  G   + + Y  L+ G     +     ++  
Sbjct: 455 ALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLH 514

Query: 122 EM 123
           +M
Sbjct: 515 QM 516



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 12/133 (9%)

Query: 31  NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
           N ++ G C    + EA+ L  ++    + P+ +++  LI+  CK  ++ +A  +  +M  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTE 138
            G   N VT + L+DG  K   M  A ++ E M +     ++             G    
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 139 AMQLYDSMLRNGI 151
             +L+D ML  GI
Sbjct: 122 GKELFDEMLGKGI 134


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 140 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 199

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG  K+  +  A ++Y+ M
Sbjct: 200 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRM 259

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 260 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 311



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G C   R+D A+++++++    L P+
Sbjct: 208 LCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPD 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 268 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRK 327

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML   + PD
Sbjct: 328 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPD 372



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 103 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 162

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 163 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 222

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 223 EMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLI-YGLCKK 281

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 282 GDLKQAH 288



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 278 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 337

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML    K +  TY+ +I+ + K  ++     + +
Sbjct: 338 DVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLK 397

Query: 122 EMCENNISPNIA 133
           EM  +  +P++ 
Sbjct: 398 EMQRDGHAPSVV 409



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 315 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTG 374

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 375 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417


>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
 gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
          Length = 546

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LDAALK+  ++T  G+ PD++TY T++  YC+   L+ A QLF+ +     +P++  +T+
Sbjct: 220 LDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIVASGRRPDATMYTV 279

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +C  G++ DA  +  +M   G K N VTYS +I+   K      A D+  EM    
Sbjct: 280 LVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKEGKSIEACDLTREMLGAG 339

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             P+              G+  EA +++  M++  + PD  ++STL  +  ++   QE
Sbjct: 340 YVPDTPLCAKVVDVLCQDGKAGEANEIWRQMVKKSVPPDNTVVSTLIYWLCKNGMVQE 397



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P++++ N ++ G   +  LD A+++ +++T   + P+ +T+T ++ A+C +G ++ A 
Sbjct: 200 ITPNLVSCNILLKGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQ 259

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +F  ++  G + +   Y+ L+DGY     ++ A  + +EM    + PN           
Sbjct: 260 QLFDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEAC 319

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
              G+  EA  L   ML  G +PD  L + + D   Q   + E
Sbjct: 320 CKEGKSIEACDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGE 362



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  LF +L +RG  P ++TYN++I G C    L EA ++++ +   + +PN
Sbjct: 389 LCKNGMVQEARGLFDEL-ERGFVPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPN 447

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  LI  FCK G+ ++   +F +M+ KG   +   Y  L+D   +  +  + + + E
Sbjct: 448 AMTYEALIKGFCKIGKSNEGYALFKEMVAKGCTPSKFLYQALVDSLSEPSHDDTVWTIVE 507



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +++ Q+  + + PD    +T+I   C    + EA  LF++L      P+ +T+  LI 
Sbjct: 363 ANEIWRQMVKKSVPPDNTVVSTLIYWLCKNGMVQEARGLFDELE-RGFVPSLLTYNSLII 421

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ G + +A  ++  M+E+  + N +TY  LI G+ K       + +++EM     +P
Sbjct: 422 GLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMVAKGCTP 481

Query: 131 N 131
           +
Sbjct: 482 S 482



 Score = 40.8 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 13/178 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLKPNSITFTILI 69
           +L+LF  L      P   ++N ++    S  RL  A  LF    T + + PN ++  IL+
Sbjct: 152 SLRLFLSLPSFNSRPSTRSFNALLHSLVSARRLRLAAALFRAAPTKLYITPNLVSCNILL 211

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
                 G +D A  +  +M   G   +VVTY+ ++  Y    +++ A  +++++  +   
Sbjct: 212 KGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIVASGRR 271

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           P+              G+  +A ++ D M   G+ P+ +  S + +   +   S E C
Sbjct: 272 PDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKEGKSIEAC 329


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL+P ++++NT++ GY  +  LDE  +L   +     +P+  
Sbjct: 148 KEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD+A  +F +MLEKG   N VT++ LIDG+ K+  +  A ++Y+++
Sbjct: 208 TYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQI 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               +SP++             G   +   L D M   G+ PD +  +TL D
Sbjct: 268 LSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLID 319



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ ++GL P+ +T+ T+I G+C   +LD A+++++++    L P+
Sbjct: 216 LCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI  FCK+G +     +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRK 335

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M E NI  +              GR  +A ++   ML  G+ PD
Sbjct: 336 KMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPD 380



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 77/129 (59%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   LD   +L   +   G +PD+ TY+ +I G C  +++DEA +LF+++    L PN 
Sbjct: 182 IKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK G++D A  ++ ++L +G   +++TY+ LI G+ K  ++K   D+ +E
Sbjct: 242 VTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDE 301

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 302 MSMKGLKPD 310



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   LKP+
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + K G +D+   + + M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 171 VVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFD 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  + PN              G+   AM++Y  +L  G+ PD +  +TL
Sbjct: 231 EMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTL 282



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 70/130 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L     L  +++ +GL+PD ITY T+I G C    L+ A +  +K+    ++ + +
Sbjct: 288 KKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDV 347

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI   CKEGR  DA  M  +ML  G K +  TY+ +++ + K+ ++ +   + +EM
Sbjct: 348 VYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEM 407

Query: 124 CENNISPNIA 133
             +   P++ 
Sbjct: 408 QRDGHVPSVV 417



 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++ +  +  D + Y  +I G C   R  +A ++  ++  V LKP+S 
Sbjct: 323 KEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+TI+++ FCK G ++  + +  +M   G   +VVT
Sbjct: 383 TYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  AL L  ++ + G +PD +TY TI+ G C L     A+ +  K+   Q+K N
Sbjct: 20  LCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKAN 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ ++D  CK+G    A  +F++M EKG   NV+TY+C+IDGY        A  +  
Sbjct: 80  VVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLR 139

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M E NI P++             G+ + A +LY  MLR  I P  +  S++ D
Sbjct: 140 DMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMID 193



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 82/131 (62%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE +   A  ++ ++  +G+ P  +TYN+++ G+C  NRL+EA Q+ + +      P
Sbjct: 345 VFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSP 404

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF+ LI  +CK GR+DD   +FS+M ++G  A+ +TY+ LI G+ K  ++  A D++
Sbjct: 405 DVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIF 464

Query: 121 EEMCENNISPN 131
           EEM  + + P+
Sbjct: 465 EEMVSSGVCPD 475



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 23/174 (13%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F ++ ++G+ P+++TYN +I GYCS  +  +A QL   +    + P+ +TF+ LI+
Sbjct: 99  AQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALIN 158

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AF KEG++  A  ++ +ML +      +TYS +IDG+ K   ++ A  +++ M     SP
Sbjct: 159 AFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSP 218

Query: 131 NI-----------------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I                        G    A  L+  M+ NG+ PD +  +TL
Sbjct: 219 DIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTL 272



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  LF ++   G+ PDI+T NT++ G C   +L++A+++F+     ++  ++ T  
Sbjct: 246 NVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCN 305

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I+  CK  ++D+A  +F+ +   G + +VVTY+ LI  + K  N   A D+Y EM   
Sbjct: 306 IIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCK 365

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I P+               R  EA Q+ DSM+  G  PD +  STL
Sbjct: 366 GIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTL 412



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 15/171 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + + G   +++T+ T++ G C   R+ +A+ L +++     +P+++T+  +++  CK G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
              A  M  KM E   KANVV YS ++D   K  N   A +++ EM E  I PN+     
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS---SGSQE 173
                   G+ ++A QL   M+   I PD +  S L +  ++    SG++E
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEE 171



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 66/120 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A ++   +   G  PD++T++T+I GYC   R+D+ ++LF ++    L  ++I
Sbjct: 383 KQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTI 442

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FCK G ++ A  +F +M+  G   + +T+  ++ G      ++    + E++
Sbjct: 443 TYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDL 502


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 31/194 (15%)

Query: 1   MLIK---ECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA---------- 46
           +LIK   +CH L  +L  FG+LT  G +PD++T+NT++ G C  +R+ EA          
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 47  -----VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
                V LF+++  + L P  ITF  LI+  C EGR+ +A  + +KM+ KG   +VVTY 
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRN 149
            +++G  K  + KSA ++  +M E +I P++             G  ++A  L+  ML  
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 150 GIMPDGLLLSTLAD 163
           GI P+    + + D
Sbjct: 326 GIAPNVFTYNCMID 339



 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++  +GL  D++TY TI+ G C +     A+ L  K+    +KP+ + ++ +ID
Sbjct: 245 AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIID 304

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G   DA  +FS+MLEKG   NV TY+C+IDG+        A  +  +M E  I+P
Sbjct: 305 RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINP 364

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G+  EA +L D ML   I PD +  +++
Sbjct: 365 DVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 407



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ H   A  LF ++ ++G+ P++ TYN +I G+CS  R  +A +L   +   ++ P+
Sbjct: 306 LCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI A  KEG++ +A  +  +ML +    + VTY+ +I G+ K      A  +++
Sbjct: 366 VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFD 425

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP++            A R  E MQL   + R G++ +    +TL
Sbjct: 426 LMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+AA  LF ++   G+ PD IT N ++ G+C   +L+EA++LFE +   ++  +++ + 
Sbjct: 482 NLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYN 541

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I   CK  ++D+A  +F  +   G + +V TY+ +I G+     +  A  ++ +M +N
Sbjct: 542 IIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDN 601

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+             AG   ++++L   M  NG   D   +  +AD
Sbjct: 602 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 650



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  +++ RGL  +  TYNT+I G+C ++ L+ A  LF+++    + P++IT  I
Sbjct: 448 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 507

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  FC+  ++++A  +F  +       + V Y+ +I G  K   +  A+D++  +  + 
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567

Query: 128 ISPNIA----------GRP--TEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++           G+   ++A  L+  M  NG  PD    +TL
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 613



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 22/179 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A  +F    D    PD++T+NTII  YC   R+DE +QL  +++   L  N+ 
Sbjct: 413 KHNRFDDAKHMF----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTT 468

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE-- 121
           T+  LI  FC+   ++ A  +F +M+  G   + +T + L+ G+ +++ ++ A +++E  
Sbjct: 469 TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVI 528

Query: 122 EMCE---NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +M +   + ++ NI         +  EA  L+ S+  +G+ PD      +  YN+  SG
Sbjct: 529 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD------VQTYNVMISG 581



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 16/166 (9%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL L  ++ +  ++PD++ Y+ II   C      +A  LF ++    + PN  T+  +I
Sbjct: 279 SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D FC  GR  DA  +   M+E+    +V+T++ LI    K   +  A  + +EM    I 
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P+               R  +A  ++D M      PD +  +T+ D
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIID 440



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  LF  L   G+EPD+ TYN +I G+C  + + +A  LF K+     +P++ 
Sbjct: 549 KGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNS 608

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+  LI    K G +D +  + S+M   G   +  T   + D
Sbjct: 609 TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 650



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+  F  +         +  N +I  +  +NR D A+ L+ K+   ++  N  +F I
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC   ++  +   F K+ + G + +VVT++ L+ G      +  A  ++  M E  
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                     EA+ L+D M+  G+ P  +  +TL
Sbjct: 207 F--------LEAVALFDQMVEIGLTPVVITFNTL 232


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A +LF ++T+RG+ PD  T+ T+I GY     +++AV LFE +    LKP+
Sbjct: 578 LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPD 637

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID FCK   M+    +++ M+ +    N ++Y  LI+GY     +  AF +++
Sbjct: 638 VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 697

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E      I            AG   +A +   +ML  GI+PDG+  +TL +
Sbjct: 698 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLIN 751



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  ALK+  ++ ++G   D++TYNTI+ G C    L EA +LF ++T   + P+  TFT 
Sbjct: 549 MSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 608

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ + K+G M+ A  +F  M+++  K +VVTY+ LIDG+ K   M+   +++ +M    
Sbjct: 609 LINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 668

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNG 150
           I PN              G  +EA +L+D M+  G
Sbjct: 669 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 703



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 68/111 (61%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD ITYNT+I G+     +D A  L  K+    L P+ IT+ ++++ F ++GRM +
Sbjct: 737 KGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQE 796

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           A ++  KM+E+G   +  TY+ LI+G+    N+K AF V++EM +    P+
Sbjct: 797 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 18/162 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---PNSIT 64
           +  A +L+ ++ ++G E  IIT NTI+ GYC   R   AV+  E L+ + LK   P+ IT
Sbjct: 689 VSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVKADEFLSNMLLKGIVPDGIT 745

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI+ F KE  MD A  + +KM   G   +V+TY+ +++G+ +   M+ A  +  +M 
Sbjct: 746 YNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMI 805

Query: 125 ENNISPN-------IAGRPT-----EAMQLYDSMLRNGIMPD 154
           E  ++P+       I G  T     EA +++D ML+ G +PD
Sbjct: 806 ERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 100/179 (55%), Gaps = 17/179 (9%)

Query: 1   MLIKECHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCV 56
           +L++ C  D    A ++F ++  +G+ PD+++++ +I G  S N  LD+A++ F  +   
Sbjct: 469 LLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI-GLLSKNGCLDQALKYFRDMKNA 527

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L P+++ +TILI  FC+ G M +A  +  +MLE+G   +VVTY+ +++G  K + +  A
Sbjct: 528 GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEA 587

Query: 117 FDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +++ EM E  + P+              G   +A+ L++ M++  + PD +  +TL D
Sbjct: 588 DELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 646



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++        + ++G+ PD++TYNT+I  YC    L+EA +L + ++   LKP 
Sbjct: 368 LCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPC 427

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+  CK G+   A  +  +ML+ G   +  TY+ L+    ++ NM  A  +++
Sbjct: 428 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 487

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P++             G   +A++ +  M   G+ PD ++ + L
Sbjct: 488 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 539



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +L+  +  R + P+ I+Y  +I GYC++  + EA +L++++     +   I
Sbjct: 650 KGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATII 709

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   ++  +C+ G    A    S ML KG   + +TY+ LI+G+ K +NM  AF +  +M
Sbjct: 710 TCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM 769

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             + + P++             GR  EA  +   M+  G+ PD    ++L + ++  +  
Sbjct: 770 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNL 829

Query: 172 QE 173
           +E
Sbjct: 830 KE 831



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D A +++ ++   G++ ++ T N +I   C   +++        +    + P+
Sbjct: 333 LVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD 392

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+A+C++G +++A  +   M  KG K  V TY+ +I+G  K+     A  V +
Sbjct: 393 VVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLD 452

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  +SP+ A                +A +++D M   G++PD +  S L
Sbjct: 453 EMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 504



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  L  +GL   I   N+++ G   +  +D A ++++++    ++ N  T  I+I+A CK
Sbjct: 311 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK 370

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
             ++++     S M EKG   +VVTY+ LI+ Y +   ++ AF++ + M    + P +  
Sbjct: 371 NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT 430

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPD 154
                      G+   A  + D ML+ G+ PD
Sbjct: 431 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 462



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE ++D A  L  ++ + GL PD+ITYN I+ G+    R+ EA  +  K+    + P+
Sbjct: 753 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 812

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+T LI+    +  + +A  +  +ML++G
Sbjct: 813 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 843



 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           + ++ ++  Y    +L E  + F  L    L  +      L+    K G +D A  ++ +
Sbjct: 289 LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQE 348

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           ++  G + NV T + +I+   K+Q +++      +M E  + P++             G 
Sbjct: 349 VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 408

Query: 136 PTEAMQLYDSMLRNGIMP 153
             EA +L DSM   G+ P
Sbjct: 409 LEEAFELMDSMSGKGLKP 426


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++   KL G++  +G+EPD  TYN +I G C + +LDEAV L+ +     L PN  
Sbjct: 538 KEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVY 597

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ++ID +CK  ++++   +F+++L +  + N V Y+ LI  Y ++ N   AF ++++M
Sbjct: 598 TYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDM 657

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               I P  A            GR  +A  L D M + G++P+
Sbjct: 658 RSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPN 700



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L+ +  +F +   +G+ PD+  ++T I  +C   ++++A+QLF  +  + + PN
Sbjct: 222 LVKANELEKSYWVF-ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPN 280

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK G +D+A     KM++ G  A ++TYS LI+G  K +    A  V +
Sbjct: 281 VVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLK 340

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E  E   +PN              G   +A+++   M+  GI P+ + L+++
Sbjct: 341 ETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSI 392



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++  A++L  ++ +RG   D ITYNT+I G C   +++E  +L  ++    ++P+
Sbjct: 501 LCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD 560

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ +LI   C+ G++D+A  ++++   +    NV TY  +IDGY K+  ++    ++ 
Sbjct: 561 TFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFT 620

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E+   N+  N              G   EA +L+D M   GI P     S+L
Sbjct: 621 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 672



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL   +  +G+ P   TY+++I G C++ R+++A  L +++    L PN + +T LI 
Sbjct: 650 AFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIG 709

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK G+MD    +  +M       N +TY+ +IDGY KS +MK+A  +  EM    I P
Sbjct: 710 GYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVP 769

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +              G+  E  ++ D M + G+  D +  +TL     Q S 
Sbjct: 770 DTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSA 821



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KLF +L  + LE + + YNT+I  YC      EA +L + +    + P + T++ LI   
Sbjct: 617 KLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGM 676

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN- 131
           C  GRM+DA  +  +M ++G   NVV Y+ LI GY K   M    +V +EM   +I PN 
Sbjct: 677 CNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNK 736

Query: 132 -----------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       +G    A +L   M+  GI+PD +  + L +
Sbjct: 737 ITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTN 779



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 47/198 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL----------------------- 40
           K  +L  AL++ G +  +G+ P+ +T N+II G+C +                       
Sbjct: 363 KMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG 422

Query: 41  ------------NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                       +R + A++   ++    ++PN    T L+   CKEG+  DA  ++ ++
Sbjct: 423 AFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRL 482

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGRP 136
           LEKG  AN+VT + LI G  K+ NM+ A  + ++M E     + I+ N         G+ 
Sbjct: 483 LEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKV 542

Query: 137 TEAMQLYDSMLRNGIMPD 154
            E  +L   M++ GI PD
Sbjct: 543 EEGFKLRGEMVKQGIEPD 560



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A  +  +  ++G  P+ + YNT+I GYC +  L +A+++   +    + PN
Sbjct: 326 LMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPN 385

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T   +I  FCK G+M+ A  +  +ML +G   N   ++ +I     +   +SA     
Sbjct: 386 SVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLR 445

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           EM   N+ PN              G+ ++A++L+  +L  G 
Sbjct: 446 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGF 487



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A +   ++   G+   +ITY+ +I G   L + +EA  + ++       PN
Sbjct: 291 LCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPN 350

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LID +CK G + DA  +   M+ KG   N VT + +I G+ K   M+ A  + E
Sbjct: 351 EVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILE 410

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           EM     S N            +  R   A++    ML   + P+  LL+TL 
Sbjct: 411 EMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLV 463



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A++L+ +L ++G   +++T N +I G C    + EAV+L +K+       +
Sbjct: 466 LCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD 525

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CKEG++++   +  +M+++G + +  TY+ LI G  +   +  A +++ 
Sbjct: 526 KITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWN 585

Query: 122 EMCENNISPNI 132
           E    ++ PN+
Sbjct: 586 ECKSRDLVPNV 596



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             ++AL+   ++  R + P+     T++ G C   +  +AV+L+ +L       N +T  
Sbjct: 436 RFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTN 495

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   CK G M +A  +  KMLE+G   + +TY+ LI G  K   ++  F +  EM + 
Sbjct: 496 ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ 555

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            I P+              G+  EA+ L++      ++P+
Sbjct: 556 GIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 595



 Score = 43.5 bits (101), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 38/69 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A KL  ++  +G+ PD +TYN +  G+C   +++E  ++ + ++   L  + I
Sbjct: 748 KSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEI 807

Query: 64  TFTILIDAF 72
           T+T L+  +
Sbjct: 808 TYTTLVHGW 816


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 14/172 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++  RG+ P    YNTII G C   R+D A+  +  +      P+ IT+TIL+D
Sbjct: 52  AYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVD 110

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK  R+ DA+++   M+E G   NVVTY+ LI+G+ K  NM  A  ++ +M EN+ SP
Sbjct: 111 ALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSP 170

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           ++              RP +  +L   M++ G  P+ +  +TL D +L  SG
Sbjct: 171 DVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD-SLVKSG 221



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 12/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  K   LD A +LF  +TDRG  PDI TYN +I G C  NR+D+A QL E++T     P
Sbjct: 251 MFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPP 310

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  ++   CK  ++D+A  ++  +   G   +VVT S LIDG  KS+ +  A  + 
Sbjct: 311 DVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLL 370

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            EM  N  +P++            A +  +++  +  ML  G +P  +  S + D   +S
Sbjct: 371 REMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS 430

Query: 169 SGSQEHCI 176
           +  ++ C+
Sbjct: 431 ARVRDGCM 438



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +   + + G  P+++TYNT+I G+C L  +DEAV LF ++      P+
Sbjct: 112 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD 171

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ILID +CK+ R  D   +  +M++ G + N +TY+ L+D   KS     AF++ +
Sbjct: 172 VFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQ 231

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M   +  P+              G+   A +L+  M   G +PD      +  YN+  S
Sbjct: 232 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPD------IYTYNIMIS 285

Query: 170 GS 171
           G+
Sbjct: 286 GA 287



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D+AL  +  +  R   P +ITY  ++   C   R+ +A  + E +      PN +T+ 
Sbjct: 83  RVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYN 141

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+ FCK G MD+A ++F++MLE     +V TY+ LIDGY K +  +    + +EM + 
Sbjct: 142 TLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKY 201

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN             +G+  +A  L   MLR    P     + + D
Sbjct: 202 GCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMID 250



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 35/157 (22%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----------TCV 56
            +D A +L  ++T+ G  PD++TYN+I+ G C  +++DEA +++E L          TC 
Sbjct: 292 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 351

Query: 57  QL-------------------------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
            L                          P+ + +TILI  FCK  ++D +   FS+ML+K
Sbjct: 352 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 411

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           G    V+TYS +ID   KS  ++    + + M E  +
Sbjct: 412 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL  ++   G EP+ ITYNT++       +  +A  L + +     KP+  TF ++ID F
Sbjct: 193 KLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMF 252

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           CK G++D A  +F  M ++G   ++ TY+ +I G  ++  +  A  + E M E    P++
Sbjct: 253 CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDV 312

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       A +  EA ++Y+ +   G   D +  STL D
Sbjct: 313 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLID 355



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  L   +  R  +P   T+N +I  +C + +LD A +LF+ +T     P+
Sbjct: 217 LVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPD 276

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I   C+  R+DDA  +  +M E G   +VVTY+ ++ G  K+  +  A++VYE
Sbjct: 277 IYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE 336

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +       ++            + R  +A +L   M RNG  PD +  + L
Sbjct: 337 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTIL 388



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 48/180 (26%)

Query: 31  NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK---------------- 74
           N ++  +    +  EA  LF+   C    P+SIT++ LI+ FCK                
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 75  -------------------EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
                               GR+D A + +  M ++    +V+TY+ L+D   KS  +  
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISD 120

Query: 116 AFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           A  + E+M E   +PN+             G   EA+ L++ ML N   PD    + L D
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +T  GL P ++++NT++ GY  +  LDE  +L   +    ++P+  T+++LI+
Sbjct: 155 AQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLIN 214

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y +M   ++ P
Sbjct: 215 GLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLP 274

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           ++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 275 DLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++ D GL P+ +T+ T+I G+C   R+D A++++ ++    L P+
Sbjct: 216 LCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 76/129 (58%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   LD   +L   +   G++PD+ TY+ +I G C  +++D+A  LF+++    L PN 
Sbjct: 182 IKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK GR+D A  ++ +ML +    +++TY+ LI G  K  ++K A D+ +E
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDE 301

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 302 MSMKGLKPD 310



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI    +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               + P I             G      +L   M R+G +P+
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPN 415



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   PN+ 
Sbjct: 406 EMQRDGYLPNVV 417



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +C    +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + S M   G + +V TYS LI+G  K   M  A  +++EM +N + PN          
Sbjct: 191 FRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   ++PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTL 282



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I   C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   NVVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL + G++   G EPD +T  +++ G+C  NR+ +AV L +K+  +  KP+ + + 
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID+ CK  R++DA   F ++  KG + NVVTY+ L++G   S     A  +  +M + 
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK 254

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I+PN+             G+  EA +L++ M+R  I PD +  S+L +
Sbjct: 255 KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVN 303



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ + G +PDI+ YN II   C   R+++A   F+++    ++PN +T+T L++
Sbjct: 174 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 233

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R  DA  + S M++K    NV+TYS L+D + K+  +  A +++EEM   +I P
Sbjct: 234 GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 293

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I              R  EA Q++D M+  G + D +  +TL
Sbjct: 294 DIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 80/131 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   +  A +LF ++    ++PDI+TY++++ G C  +R+DEA Q+F+ +       +
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLAD 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LI+ FCK  R++D   +F +M ++G  +N VTY+ LI G+F++ ++  A + + 
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 389

Query: 122 EMCENNISPNI 132
           +M    ISP+I
Sbjct: 390 QMDFFGISPDI 400



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K    D  + L  ++   G+  D+ T+N +I  +C   ++  A+ +  K+  +  +P+
Sbjct: 95  IVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPD 154

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T   L++ FC+  R+ DA  +  KM+E G K ++V Y+ +ID   K++ +  AFD ++
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFK 214

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+    I PN+            + R ++A +L   M++  I P+ +  S L D
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLD 268



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  + + P++ITY+ ++  +    ++ EA +LFE++  + + P+ +T++ L++
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVN 303

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R+D+A  MF  M+ KG  A+VV+Y+ LI+G+ K++ ++    ++ EM +  +  
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS 363

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
           N             AG   +A + +  M   GI PD     +LL  L D
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A ++F  +  +G   D+++YNT+I G+C   R+++ ++LF +++   L  N++T+ 
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F + G +D A   FS+M   G   ++ TY+ L+ G   +  ++ A  ++E+M + 
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +I             G+  EA  L+ S+   G+ PD +  +T+
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 476



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A   F ++  +G+ P+++TY  ++ G C+ +R  +A +L   +   ++ PN
Sbjct: 200 LCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPN 259

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+DAF K G++ +A  +F +M+      ++VTYS L++G      +  A  +++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFD 319

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M       ++            A R  + M+L+  M + G++ + +  +TL
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  +KLF +++ RGL  + +TYNT+I G+     +D+A + F ++    + P+  
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+   C  G ++ A ++F  M ++    ++VTY+ +I G  K+  ++ A+ ++  +
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLS 159
               + P+I    T            E   LY  M + G+M +   LS
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 509


>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
 gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   LD AL+LF  +  RG  PD++++N +I GYC   +++EA     K+    L P+
Sbjct: 605 LVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPS 664

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++ +LI+ +CK G +D A +  S+M E+  K  +++Y+ LI+G   S     A  ++ 
Sbjct: 665 AVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWN 724

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E   SPN              G+P EA+  Y SM    + PD  +   L D
Sbjct: 725 EMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVALID 778



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 12/145 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PDI++Y+  + G   +N+LD A++LF+ +     +P+ ++  ILI  +CK G++++A
Sbjct: 590 GFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEA 649

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
                KM   G   + V+Y+ LI+ + K+ ++  A     +M E N  P I         
Sbjct: 650 YNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLING 709

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPD 154
              +GRP +A  L++ M   G  P+
Sbjct: 710 CCNSGRPDDAKILWNEMQEKGCSPN 734



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+    Q+ +   +P II+Y T+I G C+  R D+A  L+ ++      PN I
Sbjct: 677 KNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRI 736

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++   CK G+ D+A + +  M EK  K +      LID +    N   AF++ +E 
Sbjct: 737 TYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFISKHNFSMAFNILKET 796

Query: 124 CENNISPN 131
            E    P+
Sbjct: 797 IEKGNIPD 804



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 47/195 (24%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF--- 65
           DAAL LF  +   G E D + YN +I   C  +RL E+ +L   +   +L+P   T+   
Sbjct: 472 DAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKESYKLLRDMEQSRLQPTHFTYNSI 531

Query: 66  --------------------------------TILIDAFCKEGRMDDATMMFSKMLEKGP 93
                                           T+L+   CK GR  +A+   + M+ +G 
Sbjct: 532 FGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQLCKNGRAIEASNFLADMVCEGF 591

Query: 94  KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQ 141
             ++V+YS  +DG  K   +  A ++++++C     P++            AG+  EA  
Sbjct: 592 LPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYN 651

Query: 142 LYDSMLRNGIMPDGL 156
               M   G++P  +
Sbjct: 652 FLHKMRVAGLVPSAV 666



 Score = 42.7 bits (99), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 13/174 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +D+      ++ D G E D  T   ++  YC+  + D+A+ +F  +   +   
Sbjct: 202 ILSKTNSIDSIENRLMEMKDFGWEVDKYTLTPVLMAYCNAGKFDKALIVFNDMH-ERGWV 260

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +   F+IL  AF K G +D       +M ++    N  T+  LI G+ K      A  + 
Sbjct: 261 DGYVFSILALAFSKWGEVDRTMQFIDRMEDQNLMLNGKTFYALIHGFVKESREDMALKLL 320

Query: 121 EEMCENNISPNIA-----------GRPTE-AMQLYDSMLRNGIMPDGLLLSTLA 162
           E+M +   + +++            R  E AM L+  M   GI PD  +L+ L 
Sbjct: 321 EKMLKLGFTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQILAKLV 374


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F ++ ++G+   ++TYN +I G C   +  EAV+L  K+  V L PN +T+ I
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC   +MD A  +F+++   G    +VTY+ LI GY K +N+  A D+ +EM E  
Sbjct: 339 LINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I+P+                  +A +++  M ++G++PD    S L
Sbjct: 399 IAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVL 444



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D+A++LF QL   GL P ++TYNT+I GY  +  L  A+ L +++    + P+ +T+TI
Sbjct: 349 MDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTI 408

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDAF +    + A  M S M + G   +V TYS L+ G     NMK A  +++ + E +
Sbjct: 409 LIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMH 468

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + PN              G    A++L + M+++G++P+
Sbjct: 469 LQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPN 507



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI+  + D A  +F +L  + +  D  ++  +I G C      +  +L   L    L P
Sbjct: 133 LLIRSNYFDKAWWIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSP 191

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + +T LID  CK+G +  A  +F KM   G   N  TYS L++G+FK    +  F +Y
Sbjct: 192 NVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMY 251

Query: 121 EEMCENNISPN 131
           E M  + I PN
Sbjct: 252 ENMKRSGIVPN 262



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++IK C    +     +L   L + GL P+++ Y T+I G C    +  A  LF K+  +
Sbjct: 163 IMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRL 222

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L PN  T+++L++ F K+G   +   M+  M   G   N   Y+CLI  Y     +  A
Sbjct: 223 GLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKA 282

Query: 117 FDVYEEMCENNIS 129
           F V+ EM E  I+
Sbjct: 283 FKVFAEMREKGIA 295



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++  A  LF ++   GL P+  TY+ ++ G+       E  Q++E +    + PN+ 
Sbjct: 205 KDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAY 264

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI  +C +G +D A  +F++M EKG    V+TY+ LI G  + +    A  +  ++
Sbjct: 265 AYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV 324

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            +  +SPNI              +   A++L++ +  +G+ P      TL  YN   +G
Sbjct: 325 NKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSP------TLVTYNTLIAG 377



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 67/127 (52%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H + A ++   +   GL PD+ TY+ ++ G C    + EA +LF+ L  + L+PNS+ + 
Sbjct: 418 HTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYN 477

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  +CKEG    A  + ++M++ G   NV ++   I    + +  K A  +  +M  +
Sbjct: 478 TMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINS 537

Query: 127 NISPNIA 133
            + P+++
Sbjct: 538 GLKPSVS 544



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL     +   G  P   T+N ++C     N  D+A  +F +L   ++  ++ +F I+
Sbjct: 106 DQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKS-KVVLDAYSFGIM 164

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C+ G       + + + E G   NVV Y+ LIDG  K  N+  A +++ +M    +
Sbjct: 165 IKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGL 224

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
            PN              G   E  Q+Y++M R+GI+P+ 
Sbjct: 225 VPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNA 263



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A KLF  L +  L+P+ + YNT+I GYC       A++L  ++    + PN  +F  
Sbjct: 454 MKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCS 513

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
            I   C++ +  +A ++  +M+  G K +V  Y
Sbjct: 514 TIGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 31/194 (15%)

Query: 1   MLIK---ECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA---------- 46
           +LIK   +CH L  +L  FG+LT  G +PD++T+NT++ G C  +R+ EA          
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 47  -----VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
                V LF+++  + L P  ITF  LI+  C EGR+ +A  + +KM+ KG   +VVTY 
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRN 149
            +++G  K  + KSA ++  +M E +I P++             G  ++A  L+  ML  
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 150 GIMPDGLLLSTLAD 163
           GI P+    + + D
Sbjct: 326 GIAPNVFTYNCMID 339



 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++  +GL  D++TY TI+ G C +     A+ L  K+    +KP+ + ++ +ID
Sbjct: 245 AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIID 304

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G   DA  +FS+MLEKG   NV TY+C+IDG+        A  +  +M E  I+P
Sbjct: 305 RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINP 364

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G+  EA +L D ML   I PD +  +++
Sbjct: 365 DVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 407



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ H   A  LF ++ ++G+ P++ TYN +I G+CS  R  +A +L   +   ++ P+
Sbjct: 306 LCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI A  KEG++ +A  +  +ML +    + VTY+ +I G+ K      A  +++
Sbjct: 366 VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFD 425

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP++            A R  E MQL   + R G++ +    +TL
Sbjct: 426 LMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+AA  LF ++   G+ PD IT N ++ G+C   +L+EA++LFE +   ++  +++ + 
Sbjct: 482 NLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYN 541

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I   CK  ++D+A  +F  +   G + +V TY+ +I G+     +  A  ++ +M +N
Sbjct: 542 IIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDN 601

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLL 158
              P+             AG   ++++L   M  NG   D   +
Sbjct: 602 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTI 645



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  +++ RGL  +  TYNT+I G+C ++ L+ A  LF+++    + P++IT  I
Sbjct: 448 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 507

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  FC+  ++++A  +F  +       + V Y+ +I G  K   +  A+D++  +  + 
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567

Query: 128 ISPNIA----------GRP--TEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++           G+   ++A  L+  M  NG  PD    +TL
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 613



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 22/179 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A  +F    D    PD++T+NTII  YC   R+DE +QL  +++   L  N+ 
Sbjct: 413 KHNRFDDAKHMF----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTT 468

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE-- 121
           T+  LI  FC+   ++ A  +F +M+  G   + +T + L+ G+ +++ ++ A +++E  
Sbjct: 469 TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVI 528

Query: 122 EMCE---NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +M +   + ++ NI         +  EA  L+ S+  +G+ PD      +  YN+  SG
Sbjct: 529 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD------VQTYNVMISG 581



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 16/166 (9%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL L  ++ +  ++PD++ Y+ II   C      +A  LF ++    + PN  T+  +I
Sbjct: 279 SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D FC  GR  DA  +   M+E+    +V+T++ LI    K   +  A  + +EM    I 
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P+               R  +A  ++D M      PD +  +T+ D
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIID 440



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 18/139 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  LF  L   G+EPD+ TYN +I G+C  + + +A  LF K+     +P++ 
Sbjct: 549 KGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNS 608

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI    K G +D +  + S+M   G   +  T             +K A ++    
Sbjct: 609 TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT-------------IKMAEEIICRV 655

Query: 121 --EEMCENNISPNIAGRPT 137
             EE+ EN + P I G  +
Sbjct: 656 SDEEIIENYLRPKINGETS 674



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+  F  +         +  N +I  +  +NR D A+ L+ K+   ++  N  +F I
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC   ++  +   F K+ + G + +VVT++ L+ G      +  A  ++  M E  
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                     EA+ L+D M+  G+ P  +  +TL +
Sbjct: 207 F--------LEAVALFDQMVEIGLTPVVITFNTLIN 234


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 14/172 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PDI +YN +I  +    R++EAV++FE+L     KP+ I+F  LI+   
Sbjct: 459 LYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLG 518

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A M F +M E+G   +VVTYS LI+ + K+  ++ A  +++EM     SPNI 
Sbjct: 519 KNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIV 578

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      +GR  EA+ LY  + + G+ PD +  + L    LQS   Q+
Sbjct: 579 TYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLE--RLQSGSHQK 628



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ + GL PD++TY+T+I  +   ++++ A +LF+++      PN
Sbjct: 517 LGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPN 576

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + GR  +A  +++K+ ++G   + +TY+ L
Sbjct: 577 IVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 618



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 54/98 (55%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +++ +L  RG + DI  YN ++      N++D+   +F+ +     +P+  T+TI+
Sbjct: 242 NKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIM 301

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           I    K G+ D++  +F +M EKG   N++ Y+ +I  
Sbjct: 302 IRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQA 339



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A +LF  +     E D   Y +++   C   +  EA+ L  K+   ++  +
Sbjct: 377 LSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTD 436

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  ++ A  K  +  D   ++ KM + GP  ++ +Y+ LI  + ++  ++ A  ++E
Sbjct: 437 TVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFE 496

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+  ++  P+I             G   EA   +  M   G+ PD +  STL +
Sbjct: 497 ELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIE 550



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 49/202 (24%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL--------------- 53
           D +L LF ++T++G  P++I YNT+I    +   +D+ + LF K+               
Sbjct: 312 DESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVVEVSNKFMNKSIYA 371

Query: 54  ----TCVQLKPNSITFTI------------------LIDAFCKEGRMDDATMMFSKMLEK 91
               T  +L   S    +                  ++++ C  G+  +A  + SK+ EK
Sbjct: 372 YLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEK 431

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
               + V Y+ ++    K +      D+YE+M ++  SP+I            AGR  EA
Sbjct: 432 RISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEA 491

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
           +++++ +  +   PD +  ++L
Sbjct: 492 VKIFEELENSSCKPDIISFNSL 513



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 20/177 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D    +F  +  +  EPD  TY  +I     + + DE++ LF+++T     PN
Sbjct: 270 LAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPN 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAF-- 117
            I +  +I A      +D    +FSKM+ +      N   Y+ L+    K  +   A   
Sbjct: 330 LIAYNTMIQALANNRMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRL 389

Query: 118 -------------DVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        D Y  M E+      AG+ TEA+ L   +    I  D ++ +T+
Sbjct: 390 FCNMWSFHDEGDRDAYMSMLESLCD---AGKTTEALDLLSKIHEKRISTDTVMYNTV 443



 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 54/110 (49%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L+ +  TY  ++  +   N  ++A +++ +L     K +   + +L+DA  K+ ++D   
Sbjct: 221 LQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVY 280

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           M+F  M  K  + +  TY+ +I    K      +  +++EM E   +PN+
Sbjct: 281 MVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNL 330


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N V ++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +   L D M   G+ PD +  +TL D
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLID 325



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ + + T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +     +  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRK 341

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
           +M + NI  +              GR  +A ++   ML  G+ PD 
Sbjct: 342 QMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDA 387



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 237 EMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L     L  +++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 EVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   Q+    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDAR 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD A  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 325



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +  +P++ 
Sbjct: 412 EMHRDGHAPSVV 423



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 10/178 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  ++ + G  PD++TY T++ G+C L RLD+A  L  ++T   L PN +TFT 
Sbjct: 176 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTS 235

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEM-CE 125
           L+D  C+E R+ DA  +  +M  K     V TY+ ++DGY +   ++ A   + EEM C 
Sbjct: 236 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMDCP 295

Query: 126 NN-ISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            N +S NI         R +EAM+L +   R    PD ++ +T+ D   +     E C
Sbjct: 296 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEAC 353



 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A  L  ++   G  PDI TY T+I G+C   + D+A+++FE+L     +P+
Sbjct: 64  LCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD 123

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T++ LID  CKEGR+ +A  +F +M++ G    N VTY+ LI G+ +   M  A ++ 
Sbjct: 124 VVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL 183

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E M E   SP++              R  +A  L + M R G+ P+ +  ++L D
Sbjct: 184 ERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMD 238



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L KE  L  A+ LFG++   G   P+ +TYN++I G+C + ++DEA+ L E++      P
Sbjct: 134 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 193

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T L++ FCK  R+DDA  + ++M  KG   NVVT++ L+DG  +   +  A  + 
Sbjct: 194 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHIL 253

Query: 121 EEMCENNISPNI 132
            EM   + SP +
Sbjct: 254 GEMRRKSCSPTV 265



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 13/150 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P  +TYN++I G C   R  EA  L E++      P+  T+T LI  FCK  + DDA  +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-NISPNIA---------- 133
           F +++ +G + +VVTYSCLIDG  K   +K A D++  M ++ +  PN            
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             G+  EAM L + M   G  PD +  +TL
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTL 201



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 86/177 (48%), Gaps = 15/177 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A  L  Q+T +GL P+++T+ +++ G C  NRL +AV +  ++      P   
Sbjct: 207 KLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVY 266

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++D +C+  ++++A     + ++  P  NVV+++ +I G  K      A ++ EE 
Sbjct: 267 TYNTILDGYCRVNQLEEARKFMLEEMDCPP--NVVSFNIMIRGLCKVNRSSEAMELVEEA 324

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRN-GIMPDGLLLSTLADYNLQ 167
                +P++    T            EA ++Y  ML   G +P+ +  ST   + LQ
Sbjct: 325 RRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTFDYWPLQ 381



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKP 60
           L +E  L  A+ + G++  +   P + TYNTI+ GYC +N+L+EA + + E++ C    P
Sbjct: 240 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMDC---PP 296

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N ++F I+I   CK  R  +A  +  +   +    +VV Y+ +ID   + + +  A  VY
Sbjct: 297 NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVY 356

Query: 121 EEMCE 125
            +M E
Sbjct: 357 RKMLE 361


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 96/168 (57%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ L+ ++   GL+P+I+TYN +I G+C    + EA ++F+ ++  +L PN ITF  
Sbjct: 324 LEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNT 383

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +IDA+CKEG M++   + S ML++G   NV TY+CLI G  + Q++++A ++  EM    
Sbjct: 384 MIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKG 443

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  ++              +   A +L + M   G+ P+ +  +TL D
Sbjct: 444 LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMD 491



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 84/130 (64%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++ AA K F ++  +GL+P+I+TYN++I G C+  +L+EA+ L++K+  + LKPN +
Sbjct: 285 KDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIV 344

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK+  M +AT +F  + ++    NV+T++ +ID Y K   M+  F +   M
Sbjct: 345 TYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSM 404

Query: 124 CENNISPNIA 133
            +  I PN++
Sbjct: 405 LDEGILPNVS 414



 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 12/157 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L AA +L  ++ ++GL+ D++TYN +I G C  ++   A +L  ++  + LKPN
Sbjct: 423 LCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPN 482

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D +C EG++  A  + ++M ++  + NVVTY+ LI GY K   +++A  +  
Sbjct: 483 HVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLN 542

Query: 122 EMCENNISPNIAGRPTEAMQLYD----SMLRNGIMPD 154
           EM E  ++PN   R T     YD     ML  G  PD
Sbjct: 543 EMLEKGLNPN---RTT-----YDIVRLEMLEKGFSPD 571



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ +T+NT+I G+C    +  A + FE++    LKPN +T+  LI+  C  G++++A  +
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           + KM+  G K N+VTY+ LI+G+ K + MK A  V++++ +  + PN+            
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
            G   E   L  SML  GI+P+
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPN 412



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 87/157 (55%), Gaps = 15/157 (9%)

Query: 22  GLEPDIITYNTIICGYC---SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78
           G+ P+++TYNT++ GYC   S  ++ +A    +++   ++ PN +TF  LID FCK+  +
Sbjct: 230 GISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENV 289

Query: 79  DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT- 137
             A   F +M ++G K N+VTY+ LI+G   +  ++ A D++++M    + PNI      
Sbjct: 290 AAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNAL 349

Query: 138 -----------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      EA +++D + +  ++P+ +  +T+ D
Sbjct: 350 INGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMID 386



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  +     ++ ++  R +  ++ T+N  I G C   +L++A    E +    + PN
Sbjct: 175 LVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPN 234

Query: 62  SITFTILIDAFCKE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +T+  L+D +CK    G+M  A     +ML      N VT++ LIDG+ K +N+ +A  
Sbjct: 235 VVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKK 294

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +EEM +  + PNI             G+  EA+ L+D M+  G+ P+
Sbjct: 295 AFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPN 342



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++    L   + D G+ P++ TYN +I G C    L  A +L  ++    LK + +
Sbjct: 390 KEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVV 449

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILID  CK  +  +A  + ++M   G K N VTY+ L+DGY     +K+A +V   M
Sbjct: 450 TYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRM 509

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +    PN+              +   A  L + ML  G+ P+
Sbjct: 510 EKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPN 552



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 68/128 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A K+F  ++ + L P++IT+NT+I  YC    ++E   L   +    + PN  
Sbjct: 355 KKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVS 414

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   C++  +  A  + ++M  KG K +VVTY+ LIDG  K+   ++A  +  EM
Sbjct: 415 TYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEM 474

Query: 124 CENNISPN 131
               + PN
Sbjct: 475 FNLGLKPN 482



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   L  A + F +  D G +  + + N ++      N++ +   +++++   ++  N 
Sbjct: 141 VKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNL 200

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK---SQNMKSAFDV 119
            TF I I+  C+ G+++ A      M   G   NVVTY+ L+DGY K   +  M  A   
Sbjct: 201 NTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAF 260

Query: 120 YEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            +EM  N I PN       I G         A + ++ M + G+ P+ +  ++L +  L 
Sbjct: 261 MKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLIN-GLC 319

Query: 168 SSGSQEHCI 176
           ++G  E  I
Sbjct: 320 NNGKLEEAI 328


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD A  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 325



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A  +++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +++ + K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +  +P++ 
Sbjct: 412 EMQRDGHAPSVV 423



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++++ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++   +   G+E DI TYNT+ CG C +NR+++A +L   +    + PN +++T 
Sbjct: 339 VEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTT 398

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------------ 115
           LI    KEG M +A  +F  M  KG + +VVTY+ +IDGY K+ +++             
Sbjct: 399 LISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKG 458

Query: 116 -----------------------AFDVYEEMCENNISPNIA------------GRPTEAM 140
                                  A  ++EEM      PN+             GR  EA 
Sbjct: 459 LVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAF 518

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           QLYD ML  G+ PD  L S L
Sbjct: 519 QLYDDMLAAGLTPDDTLYSVL 539



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 56/102 (54%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   +  A +   ++  +GL PDI TY  ++ G+C   ++D A++LFE++     KPN 
Sbjct: 439 IKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNV 498

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           + +T L+    KEGR ++A  ++  ML  G   +   YS L+
Sbjct: 499 VAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLV 540



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F +    G+EP+  TY  +I G+C + +++ A  L   +    +  N I F  +ID
Sbjct: 272 ASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMID 331

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ G ++ A  + + M + G + ++ TY+ L  G  +   M+ A  +   M E  ++P
Sbjct: 332 GYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAP 391

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N     T            EA +L+  M   G  P  +  + + D  +++   +E
Sbjct: 392 NYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIRE 446



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           ++ ++  + +  D+  Y+ +I  YC    +  A ++F++     ++PN  T+  LI+ FC
Sbjct: 240 VYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFC 299

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G+++ A M+ + M  +G   N + ++ +IDGY +   ++ A ++   M +  I  +I 
Sbjct: 300 KIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIY 359

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        R  +A +L   M   G+ P+ +  +TL
Sbjct: 360 TYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTL 399



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 61/128 (47%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L  +L   G+  +   YN+++  Y      D    L +++    ++P   
Sbjct: 160 KSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVG 219

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TIL+D   + G +     ++ +M  K    +V  YS +I+ Y +  N++ A +V++E 
Sbjct: 220 TYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDEC 279

Query: 124 CENNISPN 131
             + + PN
Sbjct: 280 VGHGVEPN 287



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 41/72 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+LF ++  RG +P+++ Y  ++ G     R +EA QL++ +    L P+   +++
Sbjct: 479 VDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSV 538

Query: 68  LIDAFCKEGRMD 79
           L+ +   + R D
Sbjct: 539 LVGSLHTDSRKD 550



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 71/140 (50%), Gaps = 14/140 (10%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM-MFS 86
           ++ + ++ G+C    +D+A  L ++L    +  N+  +  L+D++ ++ R DDA   +  
Sbjct: 149 LSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQ-RNDDAVAGLLK 207

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
           +M  +G +  V TY+ L+DG  ++ ++     VY+EM   N++ ++             G
Sbjct: 208 EMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGG 267

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
               A +++D  + +G+ P+
Sbjct: 268 NVRRASEVFDECVGHGVEPN 287


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P  +++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD A  +F++ML+ G   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLID 319



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + VTY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L ++++   LKP+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKV 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G +P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD +TY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYVPSVV 417



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +C    +  A  +F+ +T   L+P +++F  L++ + + G +D+ 
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   M  A +++ EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 13/178 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  + + PDI++YNT+I G C   +L EAV L  ++      PNS+T T L+D
Sbjct: 163 AMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMD 222

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+GRMD+A  +   M +KG  A+VV Y  LI G+  + N+    ++++EM    IS 
Sbjct: 223 GLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 282

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           N+             G+  EA  + ++M  +GI PD +  + L D  L   G   H +
Sbjct: 283 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID-GLCKDGRATHAM 339



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 14/147 (9%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + + G+ PD++TY  +I G C   R   A+ L   +     +P+++T+ +L+   CKEG 
Sbjct: 310 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 369

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--ENNISPNI--- 132
           + DA  +   M+EKG KA+VVTY+ L+ G      +  A  ++  M   EN + PN+   
Sbjct: 370 VIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF 429

Query: 133 ---------AGRPTEAMQLYDSMLRNG 150
                     GR T+A++++  M++ G
Sbjct: 430 NMLIGGLCKEGRLTKAVKIHRKMVKKG 456



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 12/155 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD   +LF ++  +G+  +++TY+ ++ G C L +  EA  +   +    + P+ +T+T
Sbjct: 264 NLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYT 323

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK+GR   A  + + M+EKG + + VTY+ L+ G  K   +  AF +   M E 
Sbjct: 324 GLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK 383

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRN 149
               ++             G+  EA++L++SM  N
Sbjct: 384 GKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 418



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 53/222 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQ 57
           L KE  +  A K+   + ++G + D++TYNT++ G C   ++DEA++LF  +     C  
Sbjct: 364 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENC-- 421

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY----------------- 100
           L+PN  TF +LI   CKEGR+  A  +  KM++KG   N+VTY                 
Sbjct: 422 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 481

Query: 101 ------------------SCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
                             S LIDG+ K + +  A  ++ EM  + ++P +          
Sbjct: 482 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 541

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
              G   +A  L+  M      PD +  +T+ D  L++   Q
Sbjct: 542 CKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQ 583



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A+K+  ++  +G   +++TYN ++ G     ++ EA++L++++  +   PN
Sbjct: 436 LCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPN 495

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T++ILID FCK   ++ A  +F +M   G    +  Y+ L+    K  +++ A  +++
Sbjct: 496 SFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQ 555

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM   N  P+I            AG      +L   M+  G+ PD L  STL +
Sbjct: 556 EMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN 609



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A+ L   + ++G EP  +TYN ++ G C    + +A ++   +     K +
Sbjct: 329 LCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 388

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML--EKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            +T+  L+   C +G++D+A  +F+ M   E   + NV T++ LI G  K   +  A  +
Sbjct: 389 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 448

Query: 120 YEEM-----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + +M     C N ++ N+       AG+  EAM+L+  +L  G +P+    S L D
Sbjct: 449 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILID 504



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  LF ++   GL P +  YNT++   C    L++A  LF+++     +P+ I+F  
Sbjct: 512 LNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNT 571

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   K G       +  KM+E G + + +T+S LI+   K   +  A    E M  + 
Sbjct: 572 MIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 631

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +P+              G  TE + L   M   G + D  ++ST+
Sbjct: 632 FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTI 677



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ A  LF ++ +   EPDII++NT+I G           +L  K+  + L+P+
Sbjct: 541 LCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPD 600

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TF+ LI+   K G +D+A     +M+  G   + + Y  L+ G     +     ++  
Sbjct: 601 ALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLH 660

Query: 122 EM 123
           +M
Sbjct: 661 QM 662



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 17/164 (10%)

Query: 5   ECHLDA-----ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           EC  DA        + G +  RG   ++   N ++ G C    + EA+ L  ++    + 
Sbjct: 117 ECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVS 176

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+ +++  LI+  CK  ++ +A  +  +M   G   N VT + L+DG  K   M  A ++
Sbjct: 177 PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 236

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
            E M +     ++             G      +L+D ML  GI
Sbjct: 237 LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGI 280


>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           diamantinensis]
          Length = 284

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 99  KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVY 158

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K   +  A ++Y+ M
Sbjct: 159 SYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRM 218

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL D
Sbjct: 219 LSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLID 270



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 72/117 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 167 LCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPD 226

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  N+ +AF+
Sbjct: 227 LITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLIDGCCKEGNLDTAFE 283



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 62  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 121

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V +YS LI+G  K   M  A ++++
Sbjct: 122 VVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFD 181

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    ++PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 182 EMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTL 233


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 135 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 194

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD A  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 195 TYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 255 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 306



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 203 LCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 262

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 263 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRK 322

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 323 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 367



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A  +++
Sbjct: 158 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFD 217

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL
Sbjct: 218 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 269



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 273 LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +++ + K  ++     + +
Sbjct: 333 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLK 392

Query: 122 EMCENNISPNIA 133
           EM  +  +P++ 
Sbjct: 393 EMQRDGHAPSVV 404



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 310 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTG 369

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++++ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 370 TYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 14/172 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PDI +YN +I  +    R++EAV++FE+L     KP+ I+F  LI+   
Sbjct: 306 LYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLG 365

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A M F +M E+G   +VVTYS LI+ + K+  ++ A  +++EM     SPNI 
Sbjct: 366 KNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIV 425

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      +GR  EA+ LY  + + G+ PD +  + L    LQS   Q+
Sbjct: 426 TYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLE--RLQSGSHQK 475



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 66/123 (53%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +++ +L  RG + DI  YN ++      N++D+   +F+ +     +P+  T+TI+
Sbjct: 59  NKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIM 118

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    K G+ D++  +F +M EKG   N++ Y+ +I     ++ +     ++ +M ENN 
Sbjct: 119 IRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNC 178

Query: 129 SPN 131
            PN
Sbjct: 179 RPN 181



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ + GL PD++TY+T+I  +   ++++ A +LF+++      PN
Sbjct: 364 LGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPN 423

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + GR  +A  +++K+ ++G   + +TY+ L
Sbjct: 424 IVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 465



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 23/169 (13%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D +L LF ++T++G  P++I YNT+I    +   +D+ + LF K+     +PN  TF+++
Sbjct: 129 DESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVI 188

Query: 69  IDAFCKE---GRMDDATMMFSKMLEKGPKANVV-TYS------------CLIDGYFKSQN 112
           ++    E   GR+D+   + +K + K   A +V T S            C +  +    +
Sbjct: 189 LNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGD 248

Query: 113 MKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +   + E +C+       AG+ TEA+ L   +    I  D ++ +T+
Sbjct: 249 RDAYMSMLESLCD-------AGKTTEALDLLSKIHEKRISTDTVMYNTV 290



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A +LF  +     E D   Y +++   C   +  EA+ L  K+   ++  +
Sbjct: 224 LSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTD 283

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  ++ A  K  +  D   ++ KM + GP  ++ +Y+ LI  + ++  ++ A  ++E
Sbjct: 284 TVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFE 343

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+  ++  P+I             G   EA   +  M   G+ PD +  STL +
Sbjct: 344 ELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIE 397



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D    +F  +  +  EPD  TY  +I     + + DE++ LF+++T     PN
Sbjct: 87  LAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPN 146

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I +  +I A      +D    +FSKM+E   + N  T+S +++
Sbjct: 147 LIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILN 190



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L+ +  TY  ++  +   N  ++A +++ +L     K +   + +L+DA  K+ ++D   
Sbjct: 38  LQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVY 97

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT----- 137
           M+F  M  K  + +  TY+ +I    K      +  +++EM E   +PN+    T     
Sbjct: 98  MVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQAL 157

Query: 138 -------EAMQLYDSMLRNGIMPDGLLLSTL 161
                  + + L+  M+ N   P+G   S +
Sbjct: 158 ANNRMVDKTIFLFSKMVENNCRPNGFTFSVI 188



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 12/144 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           Y  ++     L    EA +LF  +     + +   +  ++++ C  G+  +A  + SK+ 
Sbjct: 217 YAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIH 276

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
           EK    + V Y+ ++    K +      D+YE+M ++  SP+I            AGR  
Sbjct: 277 EKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVE 336

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTL 161
           EA+++++ +  +   PD +  ++L
Sbjct: 337 EAVKIFEELENSSCKPDIISFNSL 360


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A + F  L+ +G  PD  TY T+I GY +   +DEA +L +++    L PN
Sbjct: 724 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 783

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK   +D A  +F K+ +KG   NVVTY+ LIDGY K  NM +AF + +
Sbjct: 784 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 843

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           +M E  ISP++             G    +M+L + M++ G+
Sbjct: 844 KMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALK-LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K+C +D A K L G   +  L PD   Y  +I GYC   ++D+AV+L +++  + LK N 
Sbjct: 308 KQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNL 367

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
                LI+ +CK G + +A  + ++M++   K +  +Y+ L+DGY +  +   AF++ ++
Sbjct: 368 FICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDK 427

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M +  I P +             G   +A+Q++  M++ G+ PD +  STL D
Sbjct: 428 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLD 480



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 75/122 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++D A +LF +L  +GL P+++TYNT+I GYC +  +D A +L +K+    + P+
Sbjct: 794 LCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPS 853

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI+  CK G ++ +  + ++M++ G  + ++ Y  L+ GY +S  M+    +Y+
Sbjct: 854 VVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYD 913

Query: 122 EM 123
            M
Sbjct: 914 MM 915



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A  +  ++ D  L+PD  +YNT++ GYC      EA  L +K+    ++P  +
Sbjct: 379 KRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVL 438

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+   C+ G  DDA  ++  M+++G   + V YS L+DG FK +N + A  +++++
Sbjct: 439 TYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDI 498

Query: 124 -----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 ++ I+ N         G+  EA +++D M   G  PDG+   TL D
Sbjct: 499 LARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 550



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  + + A  L+  +  RG     IT+NT+I G C + ++ EA ++F+K+  +   P+
Sbjct: 482 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 541

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            IT+  LID +CK                                     R+ + T + +
Sbjct: 542 GITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLT 601

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M  +G   N+VTY  LIDG+ K   +  AF  Y EM EN +S NI             G
Sbjct: 602 EMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLG 661

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  EA  L   M+ +G  PD
Sbjct: 662 RIDEANLLMQKMVDHGFFPD 681



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L P+ I YN  I G C   ++D+A + F  L+     P++ T+  LI  +   G +D+A 
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +  +ML +G   N+VTY+ LI+G  KS+N+  A  ++ ++ +  + PN+          
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 829

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G    A +L D M+  GI P  +  S L +
Sbjct: 830 CKIGNMDAAFKLKDKMIEEGISPSVVTYSALIN 862



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D AL+++  +  RG+ PD + Y+T++ G   +   + A  L++ +       + ITF  
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CK G+M +A  +F KM + G   + +TY  LIDGY K+ N+  AF V   M    
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 572

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ISP+I            + R  E   L   M   G+ P+ +    L D
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALID 620



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  ++ Q+   G+ PD+   + ++  +C   ++DEA    +K+  + ++PN
Sbjct: 201 LVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 260

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ +   G ++ A  +   M EKG   NVVTY+ LI GY K   M  A  V  
Sbjct: 261 IVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLR 320

Query: 122 EMCEN-NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E   + P+              G+  +A++L D MLR G+  +  + ++L +
Sbjct: 321 GMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 15/172 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L     L  ++  RGL P+I+TY  +I G+C    LD+A   + ++T   L  N
Sbjct: 587 LFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSAN 646

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I  + ++    + GR+D+A ++  KM++ G   +   + C +    +   ++   D  +
Sbjct: 647 IIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD---HECFLKSDIRYAAIQKIADSLD 703

Query: 122 EMCE-----NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E C+     NNI  NIA       G+  +A + +  +   G +PD     TL
Sbjct: 704 ESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTL 755



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 66/123 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F  +   G  P + + N+++           A  +++++  V + P+    +I+++
Sbjct: 175 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 234

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFCK+G++D+A     KM   G + N+VTY  LI+GY    ++++A  V + M E  +S 
Sbjct: 235 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 294

Query: 131 NIA 133
           N+ 
Sbjct: 295 NVV 297


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 70/112 (62%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD+ITY +II GYC L  +  A +LF+++    +KPN  TF +LID F K G M  
Sbjct: 279 KGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRS 338

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           A +M+ KML  G   +VVT++ LIDGY +   +     ++EEM   N+SPN+
Sbjct: 339 AMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNV 390



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML+K+  +D A+ LF +  +    PD+ ++N +I G C +  +D+A + F+ +      P
Sbjct: 188 MLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFP 247

Query: 61  NSITFTILIDAFCKEGRMDDAT-MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           + +++  LI+ FC+   +     ++   ML KG   +V+TY+ +I GY K  +MK+A ++
Sbjct: 248 DIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASEL 307

Query: 120 YEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++EM  + I PN              G    AM +Y+ ML  G +PD +  ++L D
Sbjct: 308 FDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLID 363



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 13/161 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITF 65
            +D A + F  + + G  PDI++YNT+I G+C +N + +   L ++   ++ + P+ IT+
Sbjct: 229 EIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITY 288

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I  +CK G M  A+ +F +M+  G K N  T++ LIDG+ K  NM+SA  +YE+M  
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLL 348

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               P++             G   + ++L++ M    + P+
Sbjct: 349 LGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPN 389



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++  LKL+ ++  R L P++ TY  +I   C  NR+ EA      L   ++ P   
Sbjct: 367 REGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPF 426

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  +ID FCK G++D+A  + ++M EK  + + +T++ LI G      M  A   + +M
Sbjct: 427 IYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKM 486

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLR 148
            E N  P+             AG P EA Q+  + L+
Sbjct: 487 IEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQ 523



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++ +A+ ++ ++   G  PD++T+ ++I GYC    +++ ++L+E++    L PN  
Sbjct: 332 KVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVY 391

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI+A CKE R+ +A      +           Y+ +IDG+ K+  +  A  +  EM
Sbjct: 392 TYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEM 451

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E    P+            + GR  EA+  +  M+    +PD + +++L
Sbjct: 452 QEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + AA +LF ++   G++P+  T+N +I G+  +  +  A+ ++EK+  +   P+ +TFT 
Sbjct: 301 MKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTS 360

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +C+EG ++    ++ +M  +    NV TY+ LI+   K   ++ A +    +  + 
Sbjct: 361 LIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSE 420

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P              AG+  EA  +   M      PD +  + L
Sbjct: 421 VVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTIL 466



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A     ++   G++     YN ++      N +DEAV LF +       P+  +F I
Sbjct: 160 LDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNI 219

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY-EEMCEN 126
           LI   C+ G +D A   F  M   G   ++V+Y+ LI+G+ +   +    D+  E+M   
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIK 279

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +SP++             G    A +L+D M+ +GI P+    + L D
Sbjct: 280 GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLID 328



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A      L    + P    YN +I G+C   ++DEA  +  ++   + +P+
Sbjct: 400 LCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPD 459

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
            ITFTILI   C +GRM +A   F KM+E     + +T + LI    K+
Sbjct: 460 KITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKA 508



 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TY+ ++   C +   D A  +F+ +    + P+S    +L+ ++ + G++D A    +++
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
              G K +   Y+ L++   K   +  A  ++ E  E    P++             G  
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +A + + +M   G  PD +  +TL +
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLIN 257


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 97/167 (58%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+ +RG  PD+ITY T+I G+C    +DEAV L + +T    KPN+I++TI
Sbjct: 383 VDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 442

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C   R  DA  + S+M+++G   N +T++ LI+   K   ++ A ++ ++M  N 
Sbjct: 443 VLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 502

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  G+ P+ ++ S++A
Sbjct: 503 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 549



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HL+ A ++  ++   GL+P+++ YNT++ G CS  R +E  +L  ++       + +
Sbjct: 309 KEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDV 368

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FC+ G +D    +  +MLE+G   +V+TY+ +I+G+ K   +  A  + + M
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN             A R  +A  L   M++ G   + +  +TL ++
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINF 481



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 64/125 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL L   L   G EPD+++YN ++ G C   R     +L E++  +   PN +TF  
Sbjct: 208 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G  +    + ++M+E G   ++  Y+ +IDG  K  +++ A ++   M    
Sbjct: 268 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 327

Query: 128 ISPNI 132
           + PN+
Sbjct: 328 LKPNV 332



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + DEA++L   +    + PN
Sbjct: 482 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  +EGR++    MF  + +   +++ V Y+ +I    K    + A +   
Sbjct: 542 TIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLA 601

Query: 122 EMCENNISPN 131
            M  +   PN
Sbjct: 602 YMVSSGCVPN 611



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 60/116 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL+L   + ++G+ P+ I Y++I        R+++ +Q+F+ +    ++ +++ +  +
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 583

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           I + CK G  + A    + M+  G   N  TY+ LI G      +K A ++  E+C
Sbjct: 584 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELC 639



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YN ++ GYC   +L+ A +L      V + PN+ T+  ++ A C  GR+ DA  +  +M 
Sbjct: 93  YNAMVAGYCRAGQLESARRL---AAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +G       Y  +++   +    +SA  V E++
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDL 183



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++  +++F  + D  +  D + YN +I   C     + A++    +      PN
Sbjct: 552 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+TILI     EG + +A  M +++  KG
Sbjct: 612 ESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 56/123 (45%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A+++   L  RG   D+   N ++   C    +DEA+ L   L     +P+ +++  ++
Sbjct: 175 SAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVL 234

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C   R      +  +M+      N+VT++ LI    ++   +   +V  +M E+  +
Sbjct: 235 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCT 294

Query: 130 PNI 132
           P+I
Sbjct: 295 PDI 297


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 70/112 (62%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD+ITY +II GYC L  +  A +LF+++    +KPN  TF +LID F K G M  
Sbjct: 279 KGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRS 338

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           A +M+ KML  G   +VVT++ LIDGY +   +     ++EEM   N+SPN+
Sbjct: 339 AMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNV 390



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML+K+  +D A+ LF +  +    PD+ ++N +I G C +  +D+A + F+ +      P
Sbjct: 188 MLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFP 247

Query: 61  NSITFTILIDAFCKEGRMDDAT-MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           + +++  LI+ FC+   +     ++   ML KG   +V+TY+ +I GY K  +MK+A ++
Sbjct: 248 DIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASEL 307

Query: 120 YEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++EM  + I PN              G    AM +Y+ ML  G +PD +  ++L D
Sbjct: 308 FDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLID 363



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 13/161 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITF 65
            +D A + F  + + G  PDI++YNT+I G+C +N + +   L ++   ++ + P+ IT+
Sbjct: 229 EIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITY 288

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I  +CK G M  A+ +F +M+  G K N  T++ LIDG+ K  NM+SA  +YE+M  
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLL 348

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               P++             G   + ++L++ M    + P+
Sbjct: 349 LGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPN 389



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++  LKL+ ++  R L P++ TY  +I   C  NR+ EA      L   ++ P   
Sbjct: 367 REGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPF 426

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  +ID FCK G++D+A  + ++M EK  + + +T++ LI G      M  A   + +M
Sbjct: 427 IYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKM 486

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLR 148
            E N  P+             AG P EA Q+  + L+
Sbjct: 487 IEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQ 523



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++ +A+ ++ ++   G  PD++T+ ++I GYC    +++ ++L+E++    L PN  
Sbjct: 332 KVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVY 391

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI+A CKE R+ +A      +           Y+ +IDG+ K+  +  A  +  EM
Sbjct: 392 TYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEM 451

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E    P+            + GR  EA+  +  M+    +PD + +++L
Sbjct: 452 QEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + AA +LF ++   G++P+  T+N +I G+  +  +  A+ ++EK+  +   P+ +TFT 
Sbjct: 301 MKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTS 360

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +C+EG ++    ++ +M  +    NV TY+ LI+   K   ++ A +    +  + 
Sbjct: 361 LIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSE 420

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P              AG+  EA  +   M      PD +  + L
Sbjct: 421 VVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTIL 466



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A     ++   G++     YN ++      N +DEAV LF +       P+  +F I
Sbjct: 160 LDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNI 219

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY-EEMCEN 126
           LI   C+ G +D A   F  M   G   ++V+Y+ LI+G+ +   +    D+  E+M   
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIK 279

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +SP++             G    A +L+D M+ +GI P+    + L D
Sbjct: 280 GVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLID 328



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A      L    + P    YN +I G+C   ++DEA  +  ++   + +P+
Sbjct: 400 LCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPD 459

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
            ITFTILI   C +GRM +A   F KM+E     + +T + LI    K+
Sbjct: 460 KITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKA 508



 Score = 37.0 bits (84), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TY+ ++   C +   D A  +F+ +    + P+S    +L+ ++ + G++D A    +++
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
              G K +   Y+ L++   K   +  A  ++ E  E    P++             G  
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +A + + +M   G  PD +  +TL +
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLIN 257


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 14/172 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PDI +YN +I  +    R++EAV++FE+L     KP+ I+F  LI+   
Sbjct: 523 LYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLG 582

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A M F +M E+G   +VVTYS LI+ + K+  ++ A  +++EM     SPNI 
Sbjct: 583 KNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIV 642

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      +GR  EA+ LY  + + G+ PD +  + L    LQS   Q+
Sbjct: 643 TYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLE--RLQSGSHQK 692



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ + GL PD++TY+T+I  +   ++++ A +LF+++      PN
Sbjct: 581 LGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPN 640

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + GR  +A  +++K+ ++G   + +TY+ L
Sbjct: 641 IVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 682



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 25/171 (14%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D +L LF ++T++G  P++I YNT+I    +   +D+ + LF K+     +PN  TF+++
Sbjct: 344 DESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVI 403

Query: 69  IDAFCKE---GRMDDATMMFSKMLEKGPKANVV-TYSCL-------------IDGYFKSQ 111
           ++    E   GR+D+   + +K + K   A +V T S L              D  F  +
Sbjct: 404 LNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLLHLQYDWSFHDE 463

Query: 112 NMKSAF-DVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             + A+  + E +C+       AG+ TEA+ L   +    I  D ++ +T+
Sbjct: 464 GDRDAYMSMLESLCD-------AGKTTEALDLLSKIHEKRISTDTVMYNTV 507



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 12/152 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E D   Y +++   C   +  EA+ L  K+   ++  +++ +  ++ A  K  +  D   
Sbjct: 463 EGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHD 522

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
           ++ KM + GP  ++ +Y+ LI  + ++  ++ A  ++EE+  ++  P+I           
Sbjct: 523 LYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLG 582

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             G   EA   +  M   G+ PD +  STL +
Sbjct: 583 KNGDIDEAHMRFKEMREEGLSPDVVTYSTLIE 614



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 32/155 (20%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL------------------------- 43
           + A +++ +L  RG + DI  YN ++      N+L                         
Sbjct: 242 NKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKLTWNLLLVCLQIAELLDCLTVALDND 301

Query: 44  -------DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
                  D+   +F+ +     +P+  T+TI+I    K G+ D++  +F +M EKG   N
Sbjct: 302 KIISVEVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPN 361

Query: 97  VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           ++ Y+ +I     ++ +     ++ +M ENN  PN
Sbjct: 362 LIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPN 396



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I    +D    +F  +  +  EPD  TY  +I     + + DE++ LF+++T     PN 
Sbjct: 303 IISVEVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNL 362

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           I +  +I A      +D    +FSKM+E   + N  T+S +++
Sbjct: 363 IAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILN 405


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A+ L  ++ +R L PD+ITYN++I G C    LD A +L   +    L P+  T+ 
Sbjct: 307 NVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYG 366

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             ID  CK  R+++A  +F  + E+G  ANV+ YS LIDGY K   +  A  ++E+M   
Sbjct: 367 CFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSK 426

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           N SPN             AG   EA+ L+D M++ G+ P
Sbjct: 427 NCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKP 465



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 75/126 (59%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HLD+A +L   + +RGL PD  TY   I   C  NR++EA +LF+ LT   +  N I ++
Sbjct: 342 HLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYS 401

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LID +CK G++D+A  +F KML K    N  T++ LI G   + N+K A  ++++M + 
Sbjct: 402 VLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKM 461

Query: 127 NISPNI 132
            + P +
Sbjct: 462 GLKPTV 467



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K   ++ A +LF  LT+ G+  ++I Y+ +I GYC + ++DEA  LFEK+      P
Sbjct: 371 FLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSP 430

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ TF  LI   C  G + +A  +F +M++ G K  V T++ LI    K  +   A    
Sbjct: 431 NAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCL 490

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++M  +   P              AG+  EA  +   M   G+ PD    ++L
Sbjct: 491 QKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSL 543



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 17/168 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D+A ++F ++ +R    + ++YN +I G C   R+DEAV LF ++      PN  T+T 
Sbjct: 243 VDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTA 298

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C++  +  A  +  +MLE+    +++TY+ LI G  ++ ++ SA+ +   M E  
Sbjct: 299 LIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERG 357

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+             + R  EA +L+DS+   G+  + ++ S L D
Sbjct: 358 LVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLID 405



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++ D    P++ TY  +I G C  N + +A+ L +++    L P+ IT+  
Sbjct: 274 IDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNS 332

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G +D A  + S M E+G   +  TY C ID   KS  ++ A  +++ + E  
Sbjct: 333 LIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEG 392

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           +S N+             G+  EA  L++ ML     P+    + L  + L S+G+
Sbjct: 393 VSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALI-HGLCSAGN 447



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  AL LF Q+   GL+P + T+N +I         D+A +  +K+     KP + T+ 
Sbjct: 447 NLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYN 506

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             I+ +C  G++ +A  M  +M E+G   +  TY+ LI  Y K     SAFDV + M + 
Sbjct: 507 AFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDA 566

Query: 127 NISPNIAGRPTEAMQLYD 144
           +  P+     +   QL+D
Sbjct: 567 DCEPSHHTFLSLIKQLFD 584



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIIT------YNTIICGYCSLNRLDEAVQLFEKLTC 55
           +IK C+  A   LF     R +  D IT      YN ++        +DE  QL+ ++  
Sbjct: 127 MIKCCY-SAPDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLE 185

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
             +  +  TF ++I+ +CK G + +A     KM++ G   +  T +  I GY +S+++ S
Sbjct: 186 EFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDS 245

Query: 116 AFDVYEEMC-ENNISPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           AF V+EEM   N +S N        AGR  EA+ L+  M  +   P+
Sbjct: 246 AFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPN 292



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 2/140 (1%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  ALKL  Q+   G+ P  + +N +I   C L +  EA  + E + C    P      
Sbjct: 651 NLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCK 710

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI    +EG  +    +F K+   G   + + +  LIDG  K   ++    ++EEM +N
Sbjct: 711 TLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKN 770

Query: 127 --NISPNIAGRPTEAMQLYD 144
             N SP      T+ +   D
Sbjct: 771 GCNFSPRTYSILTQKLHGKD 790



 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K    D  ++LF ++   G  PD   Y  +I G C +  L  A++L +++    + P+
Sbjct: 611 MWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPS 670

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  +I   CK  +  +A  +   M+  G    +     LI G ++    +    V++
Sbjct: 671 EMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFK 730

Query: 122 EM--C---ENNISPNI-------AGRPTEAMQLYDSMLRNG 150
           ++  C   ++ I+  I        G   E  QL++ M +NG
Sbjct: 731 KLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG 771



 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K+   D A K   ++   G +P   TYN  I  YCS  ++ EA  +  ++    + P+
Sbjct: 477 MLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPD 536

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LI A+ K G    A  +   M +   + +  T+  LI   F  +       V E
Sbjct: 537 DFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRY------VVE 590

Query: 122 EMCENNIS--PNIAGRPTEAM----------QLYDSMLRNGIMPD 154
           +  E  +    N    P   M          +L++ M ++G  PD
Sbjct: 591 KSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPD 635


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  +F Q+ DRG++PD  TYN +I GY S  +  E VQ+ E+++   L+P+ IT+ +
Sbjct: 212 VDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYAL 271

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK GR  +A + F  M  KG K +V  Y+ L+ GY     +       + M  N 
Sbjct: 272 LLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNG 331

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +SPN                  EAM +++ M + G+ PD +    L D
Sbjct: 332 VSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALID 379



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 13/171 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++++ G  PD++ YNT+I G+    ++++A  LF ++    + PN +T+T +ID  CK  
Sbjct: 151 RMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQ 210

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133
            +D A  +F +M+++G K +  TY+CLI GY  +   K    + EEM  + + P+     
Sbjct: 211 VVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYA 270

Query: 134 ---------GRPTEAMQLYDSMLRNGIMPDGLLLST-LADYNLQSSGSQEH 174
                    GR  EA   +DSM R GI PD  + +  L  Y  + + S+ H
Sbjct: 271 LLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMH 321



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 48/217 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A +L   +   G+ P++I+YNT++ G+C   R+DEA +L + +    LKPN
Sbjct: 451 LCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPN 510

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TIL+  +CK  R+DDA  +F +ML KG    V TY+ ++ G F++     A ++Y 
Sbjct: 511 EFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYL 570

Query: 122 EM-------------------CENN---------------------ISPNI-------AG 134
            M                   C+NN                     ++ NI        G
Sbjct: 571 NMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGG 630

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           R  +AM L+ ++   G++PD +    +A+ NL   GS
Sbjct: 631 RKEDAMDLFATISAYGLVPDVVTYRLIAE-NLIEEGS 666



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 12/151 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +LF ++ D+G+  D + +NT++C  C+  R+ EA +L + +  V ++PN I++  L
Sbjct: 423 EKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTL 482

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C  GR+D+A  +   M+  G K N  TY+ L+ GY K++ +  A+ ++ EM    +
Sbjct: 483 VAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGV 542

Query: 129 SPNIA------------GRPTEAMQLYDSML 147
           +P +A            GR +EA +LY +M+
Sbjct: 543 TPVVATYNTILHGLFQTGRFSEANELYLNMI 573



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 12/157 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +   G+ P+   +N + C Y     ++EA+ +F K+    L P+ ++F  LIDA CK GR
Sbjct: 327 MVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGR 386

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           +DDA + F++M+ +G   N+  +S L+ G       + A +++ E+ +  I  +      
Sbjct: 387 VDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNT 446

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
                   GR  EA +L D M+R G+ P+ +  +TL 
Sbjct: 447 LMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLV 483



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKPNSITF 65
            L+     FG +   G   ++I  + ++ G C   R+DEA   L  +++     P+ + +
Sbjct: 105 RLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAY 164

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +I+ F +EG+++ A  +F +M+++G   NVVTY+ +IDG  K+Q +  A  V+++M +
Sbjct: 165 NTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMID 224

Query: 126 NNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
             + P+              G+  E +Q+ + M  +G+ PD +  + L DY
Sbjct: 225 RGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDY 275



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A+ +F ++  +GL PD++++  +I   C L R+D+AV  F ++    + PN  
Sbjct: 348 KKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIF 407

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F+ L+   C  G+ + A  +F ++L++G   + V ++ L+        +  A  + + M
Sbjct: 408 VFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLM 467

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
               + PN+             GR  EA +L D M+ NG+ P+
Sbjct: 468 IRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPN 510



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  LF ++  +G+ P + TYNTI+ G     R  EA +L+  +   + K +  
Sbjct: 523 KARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIY 582

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I+++  CK   +D+A  MF ++  K P+ + VT++ +I    K    + A D++  +
Sbjct: 583 TYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATI 642

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
               + P++             G   E   L+ +M ++G  P+  +L+ L 
Sbjct: 643 SAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALV 693



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+  F Q+ + G+ P+I  +++++ G C++ + ++A +LF ++    +  +
Sbjct: 381 LCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVD 440

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ F  L+   C EGR+ +A  +   M+  G + NV++Y+ L+ G+  +  +  A  + +
Sbjct: 441 AVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLD 500

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            M  N + PN             A R  +A  L+  ML  G+ P       +A YN
Sbjct: 501 VMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTP------VVATYN 550



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 54/201 (26%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYN---TIICGYCSLNRLDEAVQLFEKLT---CVQLKPN 61
           LD ALKLF +L        +  +N   T++      +  +  V LF ++      ++ PN
Sbjct: 30  LDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPN 89

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN------------------------- 96
           + T++ILI  FC+ GR++     F  +L+ G + N                         
Sbjct: 90  ACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILL 149

Query: 97  -----------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT-------- 137
                      VV Y+ +I+G+F+   ++ A++++ EM +  I PN+    T        
Sbjct: 150 LRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKA 209

Query: 138 ----EAMQLYDSMLRNGIMPD 154
                A  ++  M+  G+ PD
Sbjct: 210 QVVDRAKGVFQQMIDRGVKPD 230



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A K+F +L  +  + D +T+N +I       R ++A+ LF  ++   L P+
Sbjct: 591 LCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPD 650

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ++ +   +EG + +   +FS M + G   N    + L+       ++  A     
Sbjct: 651 VVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLY 710

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 711 KLDEKNFS 718



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A+ LF  ++  GL PD++TY  I         L E   LF  +      PN
Sbjct: 626 LLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPN 685

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ---NMKSAFD 118
           S     L+      G +  A +   K+ EK       T S LI  Y + +   + KS  +
Sbjct: 686 SHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKSLPE 745

Query: 119 VYEEMCENN 127
            Y  + E N
Sbjct: 746 KYRFLIEAN 754


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A+ LF QL + GL PD+ +Y  +I G C+  R+ EA+ L   +    L P+
Sbjct: 405 LCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPH 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  C+ GR+ +A  + ++M  KGP  + +TYS L+D  +K Q++  A  ++ 
Sbjct: 465 IVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFN 524

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M +  + P++            + R  EA+ L+  M    ++PD +  + L +   +S 
Sbjct: 525 QMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSG 584

Query: 170 GSQ 172
            + 
Sbjct: 585 SNS 587



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F ++ +RG EP+I+T   ++ GYC    +D A +LF+ +     K +
Sbjct: 265 LCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRD 324

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ + I  +CK GR+ DA  +F +M  +G   N+VTY+ LID   K+  +  A+++ +
Sbjct: 325 VWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVK 384

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M  + ++P+I            + R  +A+ L++ ++ +G+ PD
Sbjct: 385 TMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPD 429



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 47/204 (23%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A +LF  + + G + D+ TYN  I GYC + R+ +AV++F+++    + PN +T+ 
Sbjct: 305 NVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYN 364

Query: 67  ILIDAFCKEG-----------------------------------RMDDATMMFSKMLEK 91
            LID  CK G                                   R+D A ++F++++E 
Sbjct: 365 SLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVES 424

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G   +V +Y+ LI G   S+ M  A ++  +M   N+ P+I            +GR + A
Sbjct: 425 GLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNA 484

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
            +L + M   G +PD +  S L D
Sbjct: 485 WRLLNEMHVKGPLPDTITYSILLD 508



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 15/164 (9%)

Query: 6   CHLDAALKLFG---QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C +   L+ FG   ++  RGL+  +  +  +I G C    L EA ++F+++     +PN 
Sbjct: 231 CGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNI 290

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T T L+  +C +G +D A  +F  + E G K +V TY+  I GY K   ++ A  V++E
Sbjct: 291 VTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDE 350

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           MC   + PNI            AG  + A ++  +M R+G+ PD
Sbjct: 351 MCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPD 394



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++   +   GL PDI+T   ++ G C   RLD+A+ LF +L    L P+
Sbjct: 370 LCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPD 429

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++TILI   C   RM +A  +   M  K    ++VTYSCLIDG  +S  + +A+ +  
Sbjct: 430 VWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLN 489

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      P+                  EA+ L++ M++ G+ PD +  + + D
Sbjct: 490 EMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMID 543



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +D   + + ++   G+ P+  TY ++I G C + +  E   L +++    L  +
Sbjct: 195 LCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVS 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              FT+LID  CK G + +A  MF +M+ +G + N+VT + L+ GY    N+  A ++++
Sbjct: 255 VYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFD 314

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + E     ++             GR  +A++++D M R G++P+ +  ++L D
Sbjct: 315 AIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLID 368



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ HLD A+ LF Q+  RGLEPD++ Y  +I GYC   R+DEA+ LF ++    L P+
Sbjct: 510 LWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPD 569

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI--DGYFKSQNMKSAFDV 119
            +T+TIL +A  K G         + + +  P   V+ Y   +    +   + + S F  
Sbjct: 570 IVTYTILFNAVFKSGSNSYEWKFVNVIRDINPPPRVLKYLAALCKSEHLDYKCLASEFAS 629

Query: 120 YEEMCENNISPNI 132
           Y    + ++S +I
Sbjct: 630 YAGSLQTSVSQHI 642



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 20/177 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  +  +FG++  RG   D +  NT++ G C    + +A++  +++       N +++ 
Sbjct: 87  HVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYG 146

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--------KANVVTYSCLIDGYFKSQNMKSAFD 118
           ILI+  C+ GR+++A  +   + ++          K NVV YS +ID   ++  +   F+
Sbjct: 147 ILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFE 206

Query: 119 VYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            Y EM  N + PN              G+  E   L D M+R G+     + + L D
Sbjct: 207 FYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLID 263


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  L  A    G +   G++P+I+TYNTI+ GYCS  R++ A  +   +   +++P
Sbjct: 230 VLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEP 289

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +S T+  LI   CK+GR+++A+ +F +M++KG + + V Y+ LIDG+    N+  A    
Sbjct: 290 DSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYK 349

Query: 121 EEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM +  ISP ++             R  EA  +   +   GI PD +  + L
Sbjct: 350 DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E   D A  +  ++ ++G+ PD ITYN +I GYC      +A  L +++    +KP 
Sbjct: 371 LFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPT 430

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T L+    K+ RM +A  +F K+  +G   +V+ ++ LIDG+  + N+K AF++ +
Sbjct: 431 KKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLK 490

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    + P+              G+  EA +L+D M R GI PD +  +TL
Sbjct: 491 DMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTL 542



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A K+F ++  +GL P  + YNT+I G+C+   LD A    +++    + P   
Sbjct: 303 KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI A   E R D+A  M  ++ EKG   + +TY+ LI+GY +  N K AF +++EM
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 124 CENNISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + I P            +   R  EA  L+  +   G++PD ++ + L D
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALID 474



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 80/132 (60%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+  +  A  LF ++T  G+ PD+I +N +I G+CS + +  A +L + +  +++ P
Sbjct: 440 VLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF  ++   C+EG++++A  +F +M  +G K + ++++ LI GY +  ++K AF V 
Sbjct: 500 DEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVR 559

Query: 121 EEMCENNISPNI 132
            EM +   +P +
Sbjct: 560 NEMLDTGFNPTV 571



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LIK C      D A + F  + ++G+ P I T N+++  +  LNR + A  L+ ++  ++
Sbjct: 157 LIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLR 216

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           +K +  TF I+I+  CKEG++  A      M   G K N+VTY+ ++ GY  S  +++A 
Sbjct: 217 IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAAD 276

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +   M    I P+              GR  EA ++++ M++ G+ P  ++ +TL D
Sbjct: 277 AILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 18/177 (10%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +K    +AA  L+ ++    ++  + T+N +I   C   +L +A      +    +KP
Sbjct: 195 LFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKP 254

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  ++  +C  GR++ A  + + M  +  + +  TY  LI G  K   ++ A  ++
Sbjct: 255 NIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIF 314

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EEM +  + P+              G    A    D ML+ GI P      T++ YN
Sbjct: 315 EEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISP------TMSTYN 365



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 56/106 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A +LF ++  RG++PD I++NT+I GY     + +A ++  ++      P  +
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVL 572

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           T+  L+   CK    D A  +  +M+ KG   +  TY  LI+G  K
Sbjct: 573 TYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score = 36.2 bits (82), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +SI F  LI + C   R D+A   F  M EKG    + T + L+  + K    ++A+ +Y
Sbjct: 150 SSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            EM    I  ++             G+  +A      M  +G+ P+ +  +T+  +   S
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV-HGYCS 268

Query: 169 SGSQE 173
           SG  E
Sbjct: 269 SGRVE 273


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  L  A    G +   G++P+I+TYNTI+ GYCS  R++ A  +   +   +++P
Sbjct: 230 VLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEP 289

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +S T+  LI   CK+GR+++A+ +F +M++KG + + V Y+ LIDG+    N+  A    
Sbjct: 290 DSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYK 349

Query: 121 EEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM +  ISP ++             R  EA  +   +   GI PD +  + L
Sbjct: 350 DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E   D A  +  ++ ++G+ PD ITYN +I GYC      +A  L +++    +KP 
Sbjct: 371 LFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPT 430

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T L+    K+ RM +A  +F K+  +G   + + ++ LIDG+  + N+K AF++ +
Sbjct: 431 KKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLK 490

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    + P+              G+  EA +L+D M R GI PD +  +TL
Sbjct: 491 DMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTL 542



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A K+F ++  +GL P  + YNT+I G+C+   LD A    +++    + P   
Sbjct: 303 KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI A   E R D+A  M  ++ EKG   + +TY+ LI+GY +  N K AF +++EM
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 124 CENNISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + I P            +   R  EA  L+  +   G++PD ++ + L D
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALID 474



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 79/132 (59%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+  +  A  LF ++T  G+ PD I +N +I G+CS + +  A +L + +  +++ P
Sbjct: 440 VLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF  ++   C+EG++++A  +F +M  +G K + ++++ LI GY +  ++K AF V 
Sbjct: 500 DEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVR 559

Query: 121 EEMCENNISPNI 132
            EM +   +P +
Sbjct: 560 NEMLDTGFNPTV 571



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LIK C      D A + F  + ++G+ P I T N+++  +  LNR + A  L+ ++  ++
Sbjct: 157 LIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLR 216

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           +K +  TF I+I+  CKEG++  A      M   G K N+VTY+ ++ GY  S  +++A 
Sbjct: 217 IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAAD 276

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +   M    I P+              GR  EA ++++ M++ G+ P  ++ +TL D
Sbjct: 277 AILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 18/177 (10%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +K    +AA  L+ ++    ++  + T+N +I   C   +L +A      +    +KP
Sbjct: 195 LFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKP 254

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  ++  +C  GR++ A  + + M  +  + +  TY  LI G  K   ++ A  ++
Sbjct: 255 NIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIF 314

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EEM +  + P+              G    A    D ML+ GI P      T++ YN
Sbjct: 315 EEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISP------TMSTYN 365



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 56/106 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A +LF ++  RG++PD I++NT+I GY     + +A ++  ++      P  +
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVL 572

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           T+  L+   CK    D A  +  +M+ KG   +  TY  LI+G  K
Sbjct: 573 TYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +SI F  LI + C   R D+A   F  M EKG    + T + L+  + K    ++A+ +Y
Sbjct: 150 SSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            EM    I  ++             G+  +A      M  +G+ P+ +  +T+  +   S
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV-HGYCS 268

Query: 169 SGSQE 173
           SG  E
Sbjct: 269 SGRVE 273


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA+++F  +  RGL P+ + Y+ +I G C   ++D A+++  ++      P+
Sbjct: 184 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 243

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+ ILID  CK G +  A   F +MLE G K +V TY+ LI G+ K+ N  +A  V++
Sbjct: 244 TITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFD 303

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M  +  SPN+              + T+A   Y  M   G  PD  + S+L D  L  S
Sbjct: 304 DMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVD-GLCKS 362

Query: 170 GSQE 173
           G  E
Sbjct: 363 GKLE 366



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+ L  ++T  G  P I TYN ++ G C + RL+EA+ L  K+      P+
Sbjct: 44  LAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 103

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LID   K+ R  +A  +F +M  +G   + V Y+ LI G  ++  +  A  VY+
Sbjct: 104 VVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYK 163

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P++            AGR   A++++ SM   G+ P+ ++ S L
Sbjct: 164 TMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 215



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L  A  L  + T  G   DI TY TI+       ++ EAV L EK+T     P 
Sbjct: 9   LVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPT 68

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L++  CK GR+++A  +  K+++ G   +VVTY+ LIDG  K +    A+ +++
Sbjct: 69  IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFK 128

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    ++ +             AG+  +A  +Y +M   G +PD + LST+ D
Sbjct: 129 EMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 182



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A  ++  +T +G  PD++T +T+I G C   R+  AV++F+ +    L PN
Sbjct: 149 LLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPN 208

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LI   CK  +MD A  M ++M +     + +TY+ LIDG  KS ++ +A   ++
Sbjct: 209 EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFD 268

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E    P++            AG    A  ++D M  +   P+ +   TL
Sbjct: 269 EMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTL 320



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA   F ++ + G +PD+ TYN +I G+C     D A  +F+ ++  +  PN
Sbjct: 254 LCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPN 313

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK  ++  A++ +  M E+G   +   YS L+DG  KS  ++    +++
Sbjct: 314 VVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFD 373

Query: 122 EMCENNISPN-----------IAGRPTEAMQLYDSMLRNGIMP 153
           EM  + ++ +            A R  EA+ L++++ + G MP
Sbjct: 374 EMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEG-MP 415



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF ++  RGL  D + Y  +I G     ++ +A  +++ +T     P+ +T + +ID
Sbjct: 123 AYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 182

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+  A  +F  M  +G   N V YS LI G  K++ M  A ++  +M +   +P
Sbjct: 183 GLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 242

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +             +G    A   +D ML  G  PD      +  YN+  SG
Sbjct: 243 DTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPD------VYTYNILISG 288



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 12/152 (7%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           T++ +I G      L +A  L ++ T      +  T+T ++D   K  ++ +A  +  K+
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
              G    + TY+ L++G  K   ++ A D+  ++ +N  +P++              R 
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            EA +L+  M   G+  D +  + L    LQ+
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQA 152


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A ++  + T+ GL  D + YNT + GYC +  +++A+   E++    L+PN
Sbjct: 361 LCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPN 420

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SITF  LID FC    MD A     KM EKG   +V TY+ LIDGY K       F + E
Sbjct: 421 SITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILE 480

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M E  + PN+             G+  EA  +   M+  G++P+  + + L D
Sbjct: 481 QMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLID 534



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E      + LF ++ + G   D   Y   I     L  L   ++  + +    ++PN 
Sbjct: 152 VNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNV 211

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             + +LI   C+E R+ DA  MF +M       ++VTY+ LIDGY K   + +AF + E 
Sbjct: 212 FIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRER 271

Query: 123 MCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M E +++PNI              +  EA  L   M  NG MPDG   S L D
Sbjct: 272 MKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFD 324



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +   ++ ++G+ P + TYNT+I GY  L   D   Q+ E++  + +KPN +++ 
Sbjct: 436 EMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYG 495

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK+G++ +A ++   M+ +G   N   Y+ LIDG      +K A   ++EM  +
Sbjct: 496 SLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRS 555

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            ISP +             G+ TEA      +  +G  PD +  ++L
Sbjct: 556 EISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSL 602



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 83/152 (54%), Gaps = 11/152 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           RG+ P+   YN +I G C + ++ +A++ F+++   ++ P  +T+ +LID  CK+G++ +
Sbjct: 520 RGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTE 579

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IA 133
           A    +++   G   +V+TY+ LI GY  + N+     +YE M    I P        I+
Sbjct: 580 AEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLIS 639

Query: 134 GRPTEAMQ----LYDSMLRNGIMPDGLLLSTL 161
           G   E ++    LY+ ML+  ++PD ++ + +
Sbjct: 640 GCSKEGIELVEKLYNEMLQMNLLPDRVVYNAM 671



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A K+F ++ +  L   I+TYNT+I GYC +  LD A ++ E++    + PN
Sbjct: 221 LCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPN 280

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  L+   CK  +M +A  +  +M   G   +  TYS L DG  +  +   A ++YE
Sbjct: 281 IITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYE 340

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  E  I  N              G+  +A ++      NG++ D ++ +T  +
Sbjct: 341 QATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVN 394



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C  D   ++  Q+ + G++P++++Y ++I   C   ++ EA  +   + C  + PN+ 
Sbjct: 468 KLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQ 527

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            + +LID  C  G++ DA   F +M+       +VTY+ LIDG  K   +  A D   ++
Sbjct: 528 VYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQI 587

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
             +  SP++            AG  ++ + LY++M   GI P
Sbjct: 588 TSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKP 629



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 13/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+ F ++    + P ++TYN +I G C   +L EA     ++T     P+ IT+  LI 
Sbjct: 545 ALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLIS 604

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +   G +     ++  M   G K  V TY  LI G  K + ++    +Y EM + N+ P
Sbjct: 605 GYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSK-EGIELVEKLYNEMLQMNLLP 663

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +              G   +A  L+  ML  GI PD +  ++L
Sbjct: 664 DRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSL 706



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 35/160 (21%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA-------------------- 46
            LDAA K+  ++ ++ + P+IIT+N+++ G C + ++ EA                    
Sbjct: 261 ELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYS 320

Query: 47  ---------------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                          ++L+E+ T   ++ N+ T +IL++  CK+G+++ A  +  K  E 
Sbjct: 321 ILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTEN 380

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           G  A+ V Y+  ++GY +  +M  A    E M    + PN
Sbjct: 381 GLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPN 420



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A     Q+T  G  PD+ITYN++I GY +   + + + L+E +  + +KP 
Sbjct: 571 LCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPT 630

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI    KEG ++    ++++ML+     + V Y+ +I  Y +  N + A+ +++
Sbjct: 631 VRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQ 689

Query: 122 EMCENNISPN 131
            M +  I P+
Sbjct: 690 GMLDQGIHPD 699



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 69/124 (55%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A++L+ Q T++G+  +  T + ++ G C   ++++A ++ +K T   L  + + +   
Sbjct: 333 NGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTF 392

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++ +C+ G M+ A +   +M   G + N +T++ LID +   + M  A +  ++M E  +
Sbjct: 393 VNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGV 452

Query: 129 SPNI 132
           +P++
Sbjct: 453 TPSV 456



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL+ ++    L PD + YN +I  Y  +    +A  L + +    + P+ +T+  LI   
Sbjct: 651 KLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGH 710

Query: 73  CKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +EG++ +   + + M  K   PKA+  TY  L+ G+   ++   A+  Y EM ENN  P
Sbjct: 711 FREGKLSNIKDLVNNMKAKELAPKAD--TYDILVKGHCDLKDFSGAYVWYREMVENNFLP 768

Query: 131 NIA 133
           N +
Sbjct: 769 NAS 771



 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L   + D+G+ PD +TYN++I G+    +L     L   +   +L P + T+ IL+ 
Sbjct: 684 AYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVK 743

Query: 71  AFCKEGRMDDATMMFSKMLEKG--PKANV 97
             C       A + + +M+E    P A++
Sbjct: 744 GHCDLKDFSGAYVWYREMVENNFLPNASI 772


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A  LFG++  RGL P ++++NT+I GYC    LD+  +L   +   ++ P+
Sbjct: 235 LCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPD 294

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKEG++DDA  +F +M ++G   N VT++ LI+G+  +       ++Y+
Sbjct: 295 VFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQ 354

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    + P++             G   EA +L   M + G+ PD    + L D
Sbjct: 355 QMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLID 408



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A KLF ++ DRGL P+ +T+ T+I G+C   R D  +++++++    +KP+
Sbjct: 305 LCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPD 364

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  CK G + +A  +  +M ++G K +  TY+ LIDG  K  +++SA ++ +
Sbjct: 365 VITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRK 424

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
           EM +  I   N+A           G+  EA +    ML  GI PD
Sbjct: 425 EMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPD 469



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 49/208 (23%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  ++++ Q+  +G++PD+ITYNT+I G C +  L EA +L  ++T   LKP+  T+T+L
Sbjct: 347 DLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTML 406

Query: 69  ID-----------------------------------AFCKEGRMDDATMMFSKMLEKGP 93
           ID                                    FC+EG++ +A     +MLE G 
Sbjct: 407 IDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGI 466

Query: 94  KANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CENNISPNIA------------GRPTEAM 140
           K +  TY+ +I G+ K  ++K+ F + +EM C+ ++ P +             G+   A 
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHV-PGVVTYNVLLNGLCKQGQMKNAN 525

Query: 141 QLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            L D+ML  G++PD +  + L +  LQ+
Sbjct: 526 MLLDAMLNLGVVPDDITYNILLERTLQA 553



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   + ++ D G  PD+  +N ++   C  ++++EA  LF ++    L+P  ++F  LI+
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLIN 268

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK G +D    +   M+E     +V TYS LI+G  K   +  A  ++ EMC+  + P
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N            + GR    M++Y  MLR G+ PD +  +TL +
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLIN 373



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 17/146 (11%)

Query: 35  CGYC-----SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           CGY       LN    A   +E++      P+   F +L+   CKE ++++A ++F ++ 
Sbjct: 193 CGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIG 252

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
           ++G +  VV+++ LI+GY KS N+   F +   M EN + P++             G+  
Sbjct: 253 KRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLD 312

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +A +L+  M   G++P+ +  +TL +
Sbjct: 313 DANKLFLEMCDRGLVPNDVTFTTLIN 338


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A  LFG++  RGL P ++++NT+I GYC    LD+  +L   +   ++ P+
Sbjct: 235 LCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPD 294

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI+  CKEG++DDA  +F +M ++G   N VT++ LI+G+  +       ++Y+
Sbjct: 295 VFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQ 354

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    + P++             G   EA +L   M + G+ PD    + L D
Sbjct: 355 QMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLID 408



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A KLF ++ DRGL P+ +T+ T+I G+C   R D  +++++++    +KP+
Sbjct: 305 LCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPD 364

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  CK G + +A  +  +M ++G K +  TY+ LIDG  K  +++SA ++ +
Sbjct: 365 VITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRK 424

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
           EM +  I   N+A           G+  EA +    ML  GI PD
Sbjct: 425 EMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPD 469



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   + ++ D G  PD+  +N ++   C  ++++EA  LF ++    L+P  ++F  LI+
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLIN 268

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK G +D    +   M+E     +V TYS LI+G  K   +  A  ++ EMC+  + P
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N            + GR    M++Y  MLR G+ PD +  +TL +
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLIN 373



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 55/214 (25%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  ++++ Q+  +G++PD+ITYNT+I G C +  L EA +L  ++T   LKP+  T+T+L
Sbjct: 347 DLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTML 406

Query: 69  ID-----------------------------------AFCKEGRMDDATMMFSKMLEKGP 93
           ID                                    FC+EG++ +A     +MLE G 
Sbjct: 407 IDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGI 466

Query: 94  KANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CENNISPNIA------------GRPTEAM 140
           K +  TY+ +I G+ K  ++K+ F + +EM C+ ++ P +             G+   A 
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHV-PGVVTYNVLLNGLCKQGQMKNAN 525

Query: 141 QLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
            L D+ML  G++PD +       YN+   G  +H
Sbjct: 526 MLLDAMLNLGVVPDDI------TYNILLEGHCKH 553



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A +   ++ + G++PD  TY  +I G+C    +    +L +++ C    P  +
Sbjct: 447 REGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVV 506

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           T+ +L++  CK+G+M +A M+   ML  G   + +TY+ L++G+ K  N +  FD
Sbjct: 507 TYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGN-REDFD 560



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 17/146 (11%)

Query: 35  CGYC-----SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           CGY       LN    A   +E++      P+   F +L+   CKE ++++A ++F ++ 
Sbjct: 193 CGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIG 252

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
           ++G +  VV+++ LI+GY KS N+   F +   M EN + P++             G+  
Sbjct: 253 KRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLD 312

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +A +L+  M   G++P+ +  +TL +
Sbjct: 313 DANKLFLEMCDRGLVPNDVTFTTLIN 338



 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +    KL  ++   G  P ++TYN ++ G C   ++  A  L + +  + + P+ I
Sbjct: 482 KKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDI 541

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           T+ IL++  CK G  +D   + S   EKG   +  +Y+ LI
Sbjct: 542 TYNILLEGHCKHGNREDFDKLQS---EKGLVQDYGSYTSLI 579


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LD+  +L   +    ++P+  
Sbjct: 148 KEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +M++A  +F++ML+KG   N VT++ LIDG+ K+  + SA + Y++M
Sbjct: 208 TYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
                 P++             G   +A  L D M   G+ PD +  +TL D N
Sbjct: 268 LSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGN 321



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A  LF ++ D+GL P+ +T+ T+I G+C   ++D A++ ++++      P+
Sbjct: 216 LCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ SAF++ E
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRE 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + +I   ++A           GR T+A ++   ML  G+ PD
Sbjct: 336 TMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPD 380



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 70/129 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  ++  +GL+PD ITY T+I G C    LD A +L E +    ++ +
Sbjct: 286 LCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K +++K+A  + +
Sbjct: 346 DVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLK 405

Query: 122 EMCENNISP 130
           EM      P
Sbjct: 406 EMQRQGHVP 414



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D    + + M   G + +V TYS LI+G  K   M  A D++ 
Sbjct: 171 VVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFN 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + PN              G+   AM+ Y  ML    +PD +  +TL
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTL 282



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +L   +    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 323 KEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+  +  A  +  +M  +G    VVT
Sbjct: 383 TYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  +  RG +PD+ +Y+ +I GYC + R+DEA QLF ++    L PN++++T LI 
Sbjct: 355 ARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIH 414

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFC+ G++ +A  +F  M   G   ++ TYS L++G+ K   +  AF ++  M    + P
Sbjct: 415 AFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKP 474

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+            +G    A +L+  +  +G+ PD  + +T+ +
Sbjct: 475 NLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIIN 519



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ AL +F  +  +G+ P +++Y ++I G CS +R  EA  +  ++T + + P+
Sbjct: 241 LCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPD 300

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF++LID FCKEG + +A  +   M E G + NV+TY+ L+ GY     +  A  +++
Sbjct: 301 IVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFD 360

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P++              R  EA QL++ M+  G+ P+ +  +TL
Sbjct: 361 VMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D    +  ++   GL+P IIT+ T+I G C      +A++LF+ +     +P+  T+T
Sbjct: 141 HVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYT 200

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +  KM E G + +VVTYS LID   K + +  A D++  M   
Sbjct: 201 TIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAK 260

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP +              R  EA  + + M    IMPD +  S L D
Sbjct: 261 GISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLID 309



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 86/151 (56%), Gaps = 9/151 (5%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +LF ++  +GL P+ ++Y T+I  +C L +L EA +LF+ +      P+  T++
Sbjct: 386 RIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYS 445

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L++ FCK+G +  A  +F  M     K N+V Y+ LID   KS N+  A  ++ E+  +
Sbjct: 446 VLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVH 505

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
            + P++        Q+Y +++ NG+  +GLL
Sbjct: 506 GLQPDV--------QIYTTII-NGLCKEGLL 527



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL+LF  +  RG +PD+ TY TII G C +     A  L +K+  V  +P+
Sbjct: 171 LCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPD 230

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID+ CK+  +++A  +FS M  KG    VV+Y+ LI G       K A  +  
Sbjct: 231 VVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLN 290

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQ 167
           EM   NI P+I             G   EA  +  +M   G+ P+ +  ++L   Y+LQ
Sbjct: 291 EMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQ 349



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 69/124 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +LF  +   G  PD+ TY+ ++ G+C    L +A +LF  +    LKPN + +TI
Sbjct: 422 LREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTI 481

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+ CK G ++ A  +FS++   G + +V  Y+ +I+G  K   +  A + + +M E+ 
Sbjct: 482 LIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDG 541

Query: 128 ISPN 131
             PN
Sbjct: 542 CPPN 545



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + DA + L  Q+   GL P+  T N +I  +C +  +D    +  K+  + L+P  ITFT
Sbjct: 106 YYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFT 165

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK G    A  +F  M+ +G + +V TY+ +I+G  K     +A  + ++M E 
Sbjct: 166 TLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEV 225

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMP 153
              P++    T            EA+ ++  M   GI P
Sbjct: 226 GCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISP 264



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 64/120 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L  A +LF  +    L+P+++ Y  +I   C    L+ A +LF +L    L+P+  
Sbjct: 453 KQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQ 512

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +I+  CKEG +D+A   F KM E G   N  +Y+ +I G+ + ++   A  +  EM
Sbjct: 513 IYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEM 572



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A KLF +L   GL+PD+  Y TII G C    LDEA++ F K+      PN  
Sbjct: 488 KSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEF 547

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
           ++ ++I  F +      A  +  +M +KG  A+
Sbjct: 548 SYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 81/124 (65%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITY+T+I GYC   ++DEA++L   +  V LKPN++
Sbjct: 255 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTV 314

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y  +
Sbjct: 315 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 374

Query: 124 CENN 127
            E+ 
Sbjct: 375 TESG 378



 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 12/143 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICG------------YCSLNRLDEAVQL 49
             KE   D A   + ++ DRG+ PD++TY++II              +C   R+ E+ +L
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKL 265

Query: 50  FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           F+ +  + +KP+ IT++ LID +C  G+MD+A  + S M+  G K N VTYS LI+GY K
Sbjct: 266 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCK 325

Query: 110 SQNMKSAFDVYEEMCENNISPNI 132
              M+ A  +++EM  + +SP+I
Sbjct: 326 ISRMEDALVLFKEMESSGVSPDI 348



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 14/158 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+ G  P++ +YN ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I+ F KEG  D A   + +ML++G   +VVTYS +I    K Q M   +   +E   
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKE--- 256

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   GR  E+ +L+D M+R G+ PD +  STL D
Sbjct: 257 --------GRVIESEKLFDLMVRIGVKPDIITYSTLID 286



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 88/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KL   +   GL+P+ +TY+T+I GYC ++R+++A+ LF+++    + P+ IT+ I
Sbjct: 294 MDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 353

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    +  R   A  ++ ++ E G +  + TY+ ++ G  K++    A  +++ +C  +
Sbjct: 354 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 413

Query: 128 I-----SPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           +     + NI        GR  EA  L+ +   NG++P+
Sbjct: 414 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 452



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL LF ++   G+ PDIITYN I+ G     R   A +L+ ++T    +    
Sbjct: 325 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 384

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I++   CK    DDA  MF  +     K    T++ +ID   K      A D++   
Sbjct: 385 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 444

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             N + PN              G   E  QL+ SM  NG   D  +L+ +    LQ
Sbjct: 445 SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQ 500



 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFTI 67
           A  +F +L  RG    I   N  +    + +    AV  + ++      ++ P+  T+ I
Sbjct: 34  ARHVFDELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGADEVTPDLCTYGI 92

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C+ GR+D        +++KG +   +T++ L+ G    +    A D V   M E 
Sbjct: 93  LIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 152

Query: 127 NISPNI 132
              PN+
Sbjct: 153 GCIPNV 158


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL + G++   G EPD +T  +++ G+C  NR+ +AV L +K+  +  KP+ + + 
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID+ CK  R++DA   F ++  KG + NVVTY+ L++G   S     A  +  +M + 
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK 254

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I+PN+             G+  EA +L++ M+R  I PD +  S+L
Sbjct: 255 KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ + G +PDI+ YN II   C   R+++A   F+++    ++PN +T+T L++
Sbjct: 174 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 233

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R  DA  + S M++K    NV+TYS L+D + K+  +  A +++EEM   +I P
Sbjct: 234 GLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 293

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I              R  EA Q++D M+  G + D +  +TL
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 80/131 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   +  A +LF ++    ++PDI+TY+++I G C  +R+DEA Q+F+ +       +
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LI+ FCK  R++D   +F +M ++G  +N VTY+ LI G+F++ ++  A + + 
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 389

Query: 122 EMCENNISPNI 132
           +M    ISP+I
Sbjct: 390 QMDFFGISPDI 400



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K    D  + L  ++   G+  D+ T+N +I  +C   ++  A+ +  K+  +  +P+
Sbjct: 95  IVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPD 154

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T   L++ FC+  R+ DA  +  KM+E G K ++V Y+ +ID   K++ +  AFD ++
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFK 214

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+    I PN+            + R ++A +L   M++  I P+ +  S L D
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLD 268



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  + + P++ITY+ ++  +    ++ EA +LFE++  + + P+ +T++ LI+
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 303

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R+D+A  MF  M+ KG  A+VV+Y+ LI+G+ K++ ++    ++ EM +  +  
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS 363

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
           N             AG   +A + +  M   GI PD     +LL  L D
Sbjct: 364 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A   F ++  +G+ P+++TY  ++ G C+ +R  +A +L   +   ++ PN
Sbjct: 200 LCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPN 259

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+DAF K G++ +A  +F +M+      ++VTYS LI+G      +  A  +++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 319

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M       ++            A R  + M+L+  M + G++ + +  +TL
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A ++F  +  +G   D+++YNT+I G+C   R+++ ++LF +++   L  N++T+ 
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F + G +D A   FS+M   G   ++ TY+ L+ G   +  ++ A  ++E+M + 
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +I             G+  EA  L+ S+   G+ PD +  +T+
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 476



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  +KLF +++ RGL  + +TYNT+I G+     +D+A + F ++    + P+  
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+   C  G ++ A ++F  M ++    ++VTY+ +I G  K+  ++ A+ ++  +
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLS 159
               + P+I    T            E   LY  M + G+M +   LS
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 509


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A   F ++  RG+ P++ITY+T+I G+C   +L  A  L  ++    + PN
Sbjct: 215 LCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPN 274

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ILIDA CKEG++ +A  + ++M  KG  A+VVTY+ ++DG  KSQN+  A  ++ 
Sbjct: 275 VYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFM 334

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M +  I PN              GR   A +L+  +L  G   D      +  YN+  S
Sbjct: 335 KMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCID------VRTYNVMIS 388

Query: 170 G 170
           G
Sbjct: 389 G 389



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A KL  ++  +G   D++TYN+++ G C    LD+A  LF K+    ++PN
Sbjct: 285 LCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPN 344

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID  CK GR+ +A  +F  +L KG   +V TY+ +I G  K      A  +  
Sbjct: 345 KYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKS 404

Query: 122 EMCENNISPN 131
           +M +N   PN
Sbjct: 405 KMEDNGCIPN 414



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     +  + G++   G +PD IT NT++ G C    +  ++   +K+     + N 
Sbjct: 111 CHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQ 170

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  L++  CK G    A  +   + ++  + +VV YS +IDG  K + +  A+D + E
Sbjct: 171 VSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSE 230

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN+            AG+   A  L + M+   I P+    + L D
Sbjct: 231 MNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILID 283



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +L    ++  +G + + ++Y T++ G C +     AV+L   +     +P+ + ++ +ID
Sbjct: 154 SLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIID 213

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+  ++ A   FS+M  +G   NV+TYS LI G+  +  +  AF +  EM   NI+P
Sbjct: 214 GLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINP 273

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  EA +L   M   G   D +  +++ D
Sbjct: 274 NVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLD 318



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   A+ L  Q+  +G+EP+++T N +I  +C L ++  +  +  K+  +  +P+
Sbjct: 75  LVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPD 134

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT   L+   C +G +  +     K++ +G + N V+Y  L++G  K    + A  +  
Sbjct: 135 TITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLR 194

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            + + +  P++    T            +A   +  M   GI P+ +  STL
Sbjct: 195 MIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTL 246



 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT----CVQ 57
           L K  +LD A  LF ++   G++P+  TY  +I G C   RL  A +LF+ L     C+ 
Sbjct: 320 LCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCID 379

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKS 115
           ++    T+ ++I   CKEG  D A  M SKM + G   N VT+  +I   F K +N K+
Sbjct: 380 VR----TYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKA 434



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KLF  L  +G   D+ TYN +I G C     D+A+ +  K+      PN
Sbjct: 355 LCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPN 414

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++TF I+I +  ++   D A  +   M+ KG
Sbjct: 415 AVTFDIIIRSLFEKDENDKAEKLLHGMIAKG 445



 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  +  F +L      P II +  I+     +     A+ L  ++    ++PN +T  I
Sbjct: 46  VDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNI 105

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC  G+M  +  +  K+L+ G + + +T + L+ G      +K +   ++++    
Sbjct: 106 LINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQG 165

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              N              G    A++L   +      PD ++ ST+ D
Sbjct: 166 FQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIID 213


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A   + ++  RG+ P++ITY T+I G+C   +L  A  L  ++    + PN
Sbjct: 202 LCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPN 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ILIDA CKEG++ +A  + ++M  +G  A+VVTY+ L+DG+ K+QN+  A  ++ 
Sbjct: 262 VYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFM 321

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNG 150
           +M E  I PN              GR  +A +L+  +L  G
Sbjct: 322 KMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKG 362



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  L  ++  RG   D++TY +++ G+C    LD+A  LF K+    ++PN
Sbjct: 272 LCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPN 331

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID  CK GR+ DA  +F  +L KG   +V TY+ +I G  K   +  A  +  
Sbjct: 332 KYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKS 391

Query: 122 EMCENNISPNIA 133
           +M +N   PN+ 
Sbjct: 392 KMEDNGCIPNVV 403



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 17/174 (9%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     +  + G++   G +P+ IT  T++ G C    + ++V   +K+     + N 
Sbjct: 98  CHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQ 157

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +++  L++  CK G    A + F +M+E      NVV Y+ +IDG  K + +  A+D Y 
Sbjct: 158 VSYGTLLNGLCKIGETRCA-IKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYS 216

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    I PN+            AG+ T A  L + M+   I P+    + L D
Sbjct: 217 EMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILID 270



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +LD A  LF ++ + G++P+  TY  +I G C   RL +A +LF+ L       +  
Sbjct: 309 KNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVC 368

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ++I   CKEG +D+A  + SKM + G   NVVT+  +I   FK      A  +  EM
Sbjct: 369 TYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEM 428



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KLF  L  +G   D+ TYN +I G C    LDEA+ +  K+      PN
Sbjct: 342 LCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPN 401

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            +TF I+I +  K+   D A  +  +M+ KG
Sbjct: 402 VVTFEIIIRSLFKKDENDKAEKLLHEMIAKG 432



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+  F  +      P I+ +  I+     +     A+ L +++    ++PN +T  I
Sbjct: 33  VDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNI 92

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           LI+ FC  G+M  +  +  K+L+ G + N +T + L+ G
Sbjct: 93  LINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKG 131


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA+++F  +  RGL P+ + Y+ +I G C   ++D A+++  ++      P+
Sbjct: 315 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 374

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+ ILID  CK G ++ A   F +MLE G K +V TY+ L+ G+ K+ N  +A  V++
Sbjct: 375 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFD 434

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M  ++ SPN+              + T+A   +  M   G  PD  + S+L D  L  S
Sbjct: 435 DMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVD-GLCKS 493

Query: 170 GSQE 173
           G  E
Sbjct: 494 GKLE 497



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K   +  A+ L  ++T  G  P I TYN ++ G C + RL+EA+ L  K+      P
Sbjct: 174 WLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 233

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T LID   KE R  +A  +F +M  +G   + V Y+ LI G  ++  +  A  VY
Sbjct: 234 DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVY 293

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M      P++            AGR   A++++ SM   G+ P+ ++ S L
Sbjct: 294 KTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 346



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++AA   F ++ + G +PD+ TYN ++ G+C     D A  +F+ ++     PN
Sbjct: 385 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPN 444

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK  ++  A++ F  M E+G   +   YS L+DG  KS  ++    +++
Sbjct: 445 VVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFD 504

Query: 122 EMCENNISPN-----------IAGRPTEAMQLYDSMLRNGIMP 153
           EM  + ++ +            A R  EA+ L++++ + G MP
Sbjct: 505 EMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEG-MP 546



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A  ++  +T +G  PD++T +T+I G C   R+  AV++F+ +    L PN
Sbjct: 280 LLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPN 339

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LI   CK  +MD A  M ++M +     + +TY+ LIDG  KS ++++A   ++
Sbjct: 340 EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFD 399

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E    P++            AG    A  ++D M  +   P+ +   TL
Sbjct: 400 EMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTL 451



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA+  F   T  G   DI TY  I+       ++ +AV L EK+T     P 
Sbjct: 140 LCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPT 199

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L++  CK GR+++A  +  K+++ G   +VVTY+ LIDG  K +    A+ +++
Sbjct: 200 IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 259

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    +  +             AG+  +A  +Y +M   G +PD + LST+ D
Sbjct: 260 EMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 313



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF ++  RGL  D + Y  +I G     ++ +A  +++ +T     P+ +T + +ID
Sbjct: 254 AYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 313

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+  A  +F  M  +G   N V YS LI G  K++ M  A ++  +M +   +P
Sbjct: 314 GLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 373

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +             +G    A   +D ML  G  PD      +  YN+  SG
Sbjct: 374 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD------VYTYNILVSG 419



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 13/152 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNSITFTILIDAFCKEGRMDDATM 83
           PD+ T+N +I GYC     +EA  +  ++     + P+  T  +++   CK G++  A  
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
            F      G   ++ TY+ ++D   K++ ++ A  + E++  N  +P IA          
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             GR  EA+ L   ++ NG  PD +  ++L D
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 243



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 12/161 (7%)

Query: 20  DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79
           D G+ P + T+N ++ G C   ++  A+  FE  T      +  T+T ++D   K  ++ 
Sbjct: 123 DYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQ 182

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------ 133
           DA  +  K+   G    + TY+ L++G  K   ++ A D+  ++ +N  +P++       
Sbjct: 183 DAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 242

Query: 134 ------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
                  R  EA +L+  M   G++ D +  + L    LQ+
Sbjct: 243 DGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQA 283


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 97/165 (58%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +LF ++  +G+ PD+I+Y+T+I G+C   + D++  LF+++    ++P+ +TF++L
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  CKEG++ +A  +   M+++G   N++TY+ LIDG+    ++ SA +++  M    +
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGL 373

Query: 129 SPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P+       I G     +  EAM LY+ ML+ G  P+     TL
Sbjct: 374 EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTL 418



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 18/177 (10%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------CVQL 58
           E  +  A +LF ++   G  P+ +TY T+I G C    ++ A++L +++        V  
Sbjct: 174 EHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNC 233

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           KP  IT++I+ID  CK GR D+A  +F +M  +G   +V++YS LI G+  +     +  
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +++EM +  + P++             G+ TEA +L + M++ GI+P+ +  ++L D
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLID 350



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 18/175 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL     +  RG  P+++TY T+I G C  +R+ EA +LF ++  +   PN++T+ 
Sbjct: 141 RVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYG 200

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP------KANVVTYSCLIDGYFKSQNMKSAFDVY 120
            LI   C+ G ++ A  +  +ML          K  V+TYS +IDG  K      A +++
Sbjct: 201 TLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELF 260

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM    + P++            AG+  ++  L+D M+  G+ PD +  S L D
Sbjct: 261 EEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLID 315



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P +ITY+ II G C + R DEA +LFE++    + P+ I+++ LI  FC  G+ D +  
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F +M+++G + ++VT+S LID   K   +  A  + E M +  I PN+           
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC 353

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             G    A +L+ SM   G+ PD +  +TL +
Sbjct: 354 MVGDLNSARELFLSMPSKGLEPDEISYTTLIN 385



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 75/123 (60%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++LF +L     + +I  Y+ +I G C   +L+ A +LFEKL+   L+P+ +T+ I+I 
Sbjct: 466 AMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIH 525

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK G++D+A ++F KM E G   +++ Y+ L+ G+ +   ++    +  +M + ++SP
Sbjct: 526 GFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSP 585

Query: 131 NIA 133
           N A
Sbjct: 586 NAA 588



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A KL   +  RG+ P++ITYN++I G+C +  L+ A +LF  +    L+P+
Sbjct: 317 LCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPD 376

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++T LI+ +CK  ++ +A  ++++ML+ G   NV TY  L+ G F+   +  A  ++ 
Sbjct: 377 EISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFG 436

Query: 122 EMCENNISPN 131
            M    +S N
Sbjct: 437 VMKTYGVSAN 446



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 18/178 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H      L+ ++   GL PD+ T + +    C++NR+ EA+     +      PN
Sbjct: 101 LAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPN 160

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI   C E R+ +AT +F +M + G   N VTY  LI G  ++ N+  A  +++
Sbjct: 161 VVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHK 220

Query: 122 EMCEN------NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  +      N  P +             GR  EA +L++ M   G++PD +  STL
Sbjct: 221 EMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTL 278



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L++A +LF  +  +GLEPD I+Y T+I GYC   ++ EA+ L+ ++  V   PN  T+  
Sbjct: 358 LNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGT 417

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKAN------------------------------- 96
           L+    ++G++ DA  +F  M   G  AN                               
Sbjct: 418 LLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYN 477

Query: 97  ----VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
               +  YSCLIDG  K+  +++A++++E++ +  + P++             G+   A 
Sbjct: 478 FKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNAN 537

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
            L++ M  NG  PD +  +TL
Sbjct: 538 ILFEKMEENGCTPDIIAYNTL 558



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +  A KLFG +   G+  +   Y   + G C  + L EA++LF +L     K N
Sbjct: 422 LFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLN 481

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++ LID  CK G+++ A  +F K+ ++G + +VVTY+ +I G+ K   + +A  ++E
Sbjct: 482 IENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFE 541

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M EN  +P+I    T            E ++L   M++  + P+    + + D
Sbjct: 542 KMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVD 595



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 66/118 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A +LF +L+  GL+PD++TYN +I G+C + ++D A  LFEK+      P+
Sbjct: 492 LCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPD 551

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            I +  L+  FC+  ++++   +  KM++K    N  + + ++D   K +  K   D+
Sbjct: 552 IIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDL 609



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I ++N ++ G   +N   +   L+ ++    L P+  T +IL +  C   R+ +A   
Sbjct: 89  PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAA 148

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            + +L +G   NVVTY+ LI G      +  A  ++  M +   +PN
Sbjct: 149 MAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPN 195


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 97/179 (54%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H++ A  L+ ++  + + PD++TY+ +I G+  + +L +A+ LF K+    +KP+  
Sbjct: 220 KDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVY 279

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FCKEGR+  A  +   M+ +  K NV T++ L+DG+ K + MK    V+  M
Sbjct: 280 TFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMM 339

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            +  I PN+              +  +A +++++M + G+       + +  YN+  +G
Sbjct: 340 MKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVT------ANVHSYNIMING 392



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +  ++   G EPDIIT NT I G+C   ++ +A+   +KL  +    + +++  LI+
Sbjct: 122 AFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLIN 181

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G    A  +  ++  K  + N V Y+ +IDG  K +++  AFD+Y EM    ISP
Sbjct: 182 GLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISP 241

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +            I G+  +A+ L++ M+   I PD    + L D
Sbjct: 242 DVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVD 286



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 79/141 (56%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  +G++P+++TY +++ GYC + ++++A ++F  ++   +  N  ++ I+I+ FC
Sbjct: 335 VFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFC 394

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K  ++D A  +F +M  K    +VVTY+ LIDG  KS  +  AF +  EM +    PNI 
Sbjct: 395 KIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNII 454

Query: 134 GRPTEAMQLYDSMLRNGIMPD 154
              +    L   +   GI P+
Sbjct: 455 TYNSILNALLTKLKDQGIQPN 475



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 94/184 (51%), Gaps = 20/184 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A  +   +  + ++P++ T+NT++ G+C   ++ E   +F  +    +KPN +
Sbjct: 290 KEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVV 349

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D +C   +++ A  +F+ M ++G  ANV +Y+ +I+G+ K + +  A  ++ EM
Sbjct: 350 TYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEM 409

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL--------LLSTLAD 163
              +I P++            +G+ + A QL + M   G  P+ +        LL+ L D
Sbjct: 410 HHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKD 469

Query: 164 YNLQ 167
             +Q
Sbjct: 470 QGIQ 473



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL+L  ++  + ++ + + YNT+I G      +++A  L+ ++   ++ P+ +T++ LI
Sbjct: 191 AALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALI 250

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             F   G++ DA  +F+KM+ +  K +V T++ L+DG+ K   +K A +V + M   +I 
Sbjct: 251 RGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIK 310

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           PN++   T            E   ++  M++ GI P+ +   +L D
Sbjct: 311 PNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMD 356



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 23/107 (21%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF-- 65
           +D A+KLF ++  + + PD++TYN++I G C   ++  A QL  ++      PN IT+  
Sbjct: 399 VDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNS 458

Query: 66  ---------------------TILIDAFCKEGRMDDATMMFSKMLEK 91
                                TILI   C+ G+++ A  +F  +L K
Sbjct: 459 ILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDLLVK 505



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 56/117 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF  L  +        +N I+            + L +++    + PN +TF I
Sbjct: 49  VDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNI 108

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           LI+ FC+ G +  A  + +K+L+ G + +++T +  I G+     +  A + ++++ 
Sbjct: 109 LINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLV 165


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L+ ++  + + PD+ TYN +I G+C + +L +A+ LF K+T   + P+  TF IL+D
Sbjct: 260 AFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVD 319

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFCKEGR+ +A    + M+++G K +VVTY+ L+D Y     +  A  ++  M    ++ 
Sbjct: 320 AFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTA 379

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+                 +AM+L+  M    I P+ +  S+L D
Sbjct: 380 NVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLID 424



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ LF ++T   + PD+ T+N ++  +C   R+ EA      +    +KP+ +T+  
Sbjct: 292 LKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNS 351

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +C    ++ A  +F+ M  +G  ANV +YS +I+ + K + +  A  +++EM    
Sbjct: 352 LMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQ 411

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
           I PN+            +GR + A++L D M   G  PD + L+
Sbjct: 412 IFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLT 455



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A      +  +G++PD++TYN+++  YC +N +++A  +F  ++   +  N  
Sbjct: 323 KEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVR 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++I+I+ FCK   +D A  +F +M  K    NV+TYS LIDG  KS  +  A ++ +EM
Sbjct: 383 SYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEM 442

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +    P+I    T   QL D     GI P+    + L D
Sbjct: 443 HDRGQQPDII---TLTRQLKDQ----GIRPNMFTYTILID 475



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 16/154 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-----------CV 56
           +D A+KLF ++  + + P++ITY+++I G C   R+  A++L +++              
Sbjct: 397 VDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTR 456

Query: 57  QLK-----PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111
           QLK     PN  T+TILID  CK GR++DA  +F  +L KG    V TY+ +I G+    
Sbjct: 457 QLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKG 516

Query: 112 NMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDS 145
               A  +  +M +N   PN          L+D+
Sbjct: 517 LFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFDN 550



 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  +F  L  +G    + TY  +I G+C+    DEA+ L  K+      PN
Sbjct: 477 LCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPN 536

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK 87
           ++T+ I+I +       D A   F K
Sbjct: 537 AVTYEIIIRSLFDNDENDKAENFFVK 562


>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 1430

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 17/179 (9%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  L   G  PD++ +N +I G C +NR  EA  LF +L    L P+ +T+ +
Sbjct: 582 VDHAMKIFKDLWSHGHCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSVVTYNL 641

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            ID +CK G +D A     +M ++    +VVTY+ L+DG+ K +    A  +++EM +N 
Sbjct: 642 FIDCWCKNGNVDKAMAHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEMEKNG 701

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD-----GLLLSTLADYNLQSS 169
             PN       I G     RPTEA+     M +  + PD      LL + L+D NL S+
Sbjct: 702 CPPNQITFMALIYGLCKCCRPTEALCYLREMQQKEMKPDSFIYVALLSAYLSDLNLTSA 760



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++D A+    ++T     P ++TY T++ G+C   R D+A+ LF+++      PN I
Sbjct: 648 KNGNVDKAMAHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEMEKNGCPPNQI 707

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI   CK  R  +A     +M +K  K +   Y  L+  Y    N+ SAF+++ EM
Sbjct: 708 TFMALIYGLCKCCRPTEALCYLREMQQKEMKPDSFIYVALLSAYLSDLNLTSAFEIFREM 767

Query: 124 CENNISP 130
            +    P
Sbjct: 768 VDLGFFP 774



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 53/212 (25%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   LD AL LF  +     +P I+ YN +I   C  NRL+++ +L  ++  + ++P 
Sbjct: 436 FLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGIEPT 495

Query: 62  SITF-----------------------------------TILIDAFCKEGRMDDATMMFS 86
             T+                                   T+L+   C  GR+ +A     
Sbjct: 496 HFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPWIKHTTLLVKELCDHGRVIEACEFLD 555

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M ++G   ++V+YS  I G    Q +  A  +++++  +   P++              
Sbjct: 556 NMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFKDLWSHGHCPDVVCFNVLIRGLCKVN 615

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           R TEA  L+  +++ G+ P      ++  YNL
Sbjct: 616 RFTEAEDLFHELVKRGLSP------SVVTYNL 641



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 2/128 (1%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             D AL ++ ++ ++G   + +     +C +  L  +D+A +L E++    ++ +  TF 
Sbjct: 211 RFDQALSVYKEMEEKGWVDERVCSMMALC-FSKLGEVDKAFELVERMGECGMRLSEKTFC 269

Query: 67  ILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +LI  F KE R+D A  +F KM  E     +V  Y  LI G  K+++   A  ++ EM E
Sbjct: 270 VLIHGFVKESRVDKALQLFDKMRREDSFTPDVSLYDVLIGGLCKNKDTDRAISLFSEMKE 329

Query: 126 NNISPNIA 133
             + P+I 
Sbjct: 330 FGVRPDIG 337



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           + +F +   R + P+I +++ +I G+   ++LD A+ LF  +     KP  + +  LID+
Sbjct: 411 MDVFFKTVKRMVFPNITSFSIVIDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDS 470

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            CK  R++ +  +  +M E G +    TY+ +     K +++ +A  + +EM      P 
Sbjct: 471 LCKSNRLEKSYELLREMKELGIEPTHFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPW 530

Query: 132 IA------------GRPTEAMQLYDSMLRNGIMPD 154
           I             GR  EA +  D+M + G +PD
Sbjct: 531 IKHTTLLVKELCDHGRVIEACEFLDNMTQQGFLPD 565



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 1/109 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITFT 66
           +D A +L  ++ + G+     T+  +I G+   +R+D+A+QLF+K+       P+   + 
Sbjct: 246 VDKAFELVERMGECGMRLSEKTFCVLIHGFVKESRVDKALQLFDKMRREDSFTPDVSLYD 305

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           +LI   CK    D A  +FS+M E G + ++   + LI  +  S++M S
Sbjct: 306 VLIGGLCKNKDTDRAISLFSEMKEFGVRPDIGILTKLISCFSDSKSMVS 354



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 55/177 (31%)

Query: 9   DAALKLFGQLTDRGLEPDI-----------------------------------ITYNTI 33
           D A+ LF ++ + G+ PDI                                   + YN +
Sbjct: 318 DRAISLFSEMKEFGVRPDIGILTKLISCFSDSKSMVSRLLEEIPEGEEDEQTLVLIYNAL 377

Query: 34  ICGYCSLNRLDEAVQL--------------------FEKLTCVQLKPNSITFTILIDAFC 73
           +  Y +   +DEA +L                    F K     + PN  +F+I+ID F 
Sbjct: 378 LTCYVNDGLMDEAYRLIRMMIQSKSSTDSDENRMDVFFKTVKRMVFPNITSFSIVIDGFL 437

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           K  ++D A  +F+ M     K  ++ Y+ LID   KS  ++ ++++  EM E  I P
Sbjct: 438 KNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGIEP 494



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 1/129 (0%)

Query: 2   LIKECHLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            +KE  +D AL+LF ++  +    PD+  Y+ +I G C     D A+ LF ++    ++P
Sbjct: 275 FVKESRVDKALQLFDKMRREDSFTPDVSLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRP 334

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +    T LI  F     M    +      E+  +  V+ Y+ L+  Y     M  A+ + 
Sbjct: 335 DIGILTKLISCFSDSKSMVSRLLEEIPEGEEDEQTLVLIYNALLTCYVNDGLMDEAYRLI 394

Query: 121 EEMCENNIS 129
             M ++  S
Sbjct: 395 RMMIQSKSS 403


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 81/124 (65%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITY+T+I GYC   ++DEA++L   +  V LKPN++
Sbjct: 255 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTV 314

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y  +
Sbjct: 315 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 374

Query: 124 CENN 127
            E+ 
Sbjct: 375 TESG 378



 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 12/143 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICG------------YCSLNRLDEAVQL 49
             KE   D A   + ++ DRG+ PD++TY++II              +C   R+ E+ +L
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKL 265

Query: 50  FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           F+ +  + +KP+ IT++ LID +C  G+MD+A  + S M+  G K N VTYS LI+GY K
Sbjct: 266 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCK 325

Query: 110 SQNMKSAFDVYEEMCENNISPNI 132
              M+ A  +++EM  + +SP+I
Sbjct: 326 ISRMEDALVLFKEMESSGVSPDI 348



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 14/158 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+ G  P++ +YN ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I+ F KEG  D A   + +ML++G   +VVTYS +I    K Q M   +   +E   
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKE--- 256

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   GR  E+ +L+D M+R G+ PD +  STL D
Sbjct: 257 --------GRVIESEKLFDLMVRIGVKPDIITYSTLID 286



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 88/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KL   +   GL+P+ +TY+T+I GYC ++R+++A+ LF+++    + P+ IT+ I
Sbjct: 294 MDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 353

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    +  R   A  ++ ++ E G +  + TY+ ++ G  K++    A  +++ +C  +
Sbjct: 354 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 413

Query: 128 I-----SPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           +     + NI        GR  EA  L+ +   NG++P+
Sbjct: 414 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 452



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 12/178 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL LF ++   G+ PDIITYN I+ G     R   A +L+ ++T    +    
Sbjct: 325 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 384

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I++   CK    DDA  MF  +     K    T++ +ID   K      A D++   
Sbjct: 385 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 444

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
             N + PN              G   E  QL+ SM  NG   D  +L+ +    LQ +
Sbjct: 445 SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRA 502



 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFTI 67
           A  +F +L  RG    I   N  +    + +    AV  + ++      ++ P+  T+ I
Sbjct: 34  ARHVFDELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGADEVTPDLCTYGI 92

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C+ GR+D        +++KG +   +T++ L+ G    +    A D V   M E 
Sbjct: 93  LIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 152

Query: 127 NISPNI 132
              PN+
Sbjct: 153 GCIPNV 158


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 96/167 (57%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+ + G  PD+ITY T+I G+C    +DEAV L + ++    KPN+I++TI
Sbjct: 369 VDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 428

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C+  R  DA  + S M+++G   N VT++ LI+   K   ++ A ++ ++M  N 
Sbjct: 429 VLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNG 488

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  GI P+ ++ S++A
Sbjct: 489 CSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMA 535



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+ H + A  +  ++   GL+P+++ YNT++ G CS  R +EA  L  ++       +
Sbjct: 293 ICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLD 352

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF IL+D FC+ G +D    +  +MLE G   +V+TY+ +I+G+ K   +  A  + +
Sbjct: 353 DVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLK 412

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M      PN             A R  +A +L   M++ G +P+ +  +TL ++
Sbjct: 413 NMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINF 467



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  +L   G EPDI++YN ++ G C   R D+  +L  ++  V   PN  TF  
Sbjct: 194 VDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNT 253

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G  +      S+M E G   ++  Y+ +IDG  K  + + A D+   M    
Sbjct: 254 LIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYG 313

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           + PN+            A R  EA  L   M +     D +  + L D+  Q+
Sbjct: 314 LKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQN 366



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 64/130 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + +EA++L   +    + PN
Sbjct: 468 MCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPN 527

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  +EGR D    MF  + +   +++   Y+ +I    K      A D + 
Sbjct: 528 TIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFA 587

Query: 122 EMCENNISPN 131
            M  N   PN
Sbjct: 588 YMVSNGCMPN 597



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 60/123 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + AL+L   + ++G+ P+ I Y+++        R D+ +Q+F+ +    ++ +
Sbjct: 503 LGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSD 562

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  +I + CK    D A   F+ M+  G   N  TY+ LI G      ++ A D+  
Sbjct: 563 AALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLS 622

Query: 122 EMC 124
           E+C
Sbjct: 623 ELC 625



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 74/164 (45%), Gaps = 15/164 (9%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A++    L  +G   D    N ++   C    +DE V+L  KL     +P+ +++  ++
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C   R DD   +  +M+  G   NV T++ LI    ++   +   +   +M E+  +
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCT 280

Query: 130 PNIAGRPTEAMQLYDSMLRNGIMPDGL------LLSTLADYNLQ 167
           P+        +++Y +++ +GI  DG       +LS +  Y L+
Sbjct: 281 PD--------LRMYATII-DGICKDGHHEVANDILSRMPSYGLK 315



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   D  +++F  + D  +  D   YN +I   C     D A+  F  +      PN
Sbjct: 538 LSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 597

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK 91
             T+TILI     EG + +A  + S++  +
Sbjct: 598 ESTYTILIRGLASEGLVREAQDLLSELCSR 627



 Score = 38.9 bits (89), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++ YN +I GYC   R  +          V + PN+ T+  ++ + C  G + DA  +  
Sbjct: 76  VVAYNAMIAGYC---RAGQVAAARRLAAAVPVPPNAYTYFPIVRSLCARGLIADALTVLD 132

Query: 87  KMLEKG-----PKANVVTYSCLIDGYFKS 110
           +M  +G     P  +V+  +    G F+S
Sbjct: 133 EMPLRGCAATPPMCHVILEAACRGGGFRS 161



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +  ++  RG        + I+   C       AV+  + L       +S    +++ 
Sbjct: 127 ALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVS 186

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C++G +D+   +  K+   G + ++V+Y+ ++ G   ++      ++  EM      P
Sbjct: 187 AICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPP 246

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+A            G   +  +    M  +G  PD  + +T+ D
Sbjct: 247 NVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIID 291


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +      P+  
Sbjct: 150 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVY 209

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD A  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 210 TYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQM 269

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 270 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLID 321



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 218 LCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 277

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF   +
Sbjct: 278 LITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRK 337

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDG 155
            M + NI   ++A           GR  +A ++   ML  G+ PD 
Sbjct: 338 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDA 383



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 113 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 172

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G   +V TYS LI+G  K   M  A ++++
Sbjct: 173 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFD 232

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 233 EMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI-YGLCKK 291

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 292 GDLKQAH 298



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A    +++    ++ +
Sbjct: 288 LCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLD 347

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G   +  TY+ +I+ + K  ++     + +
Sbjct: 348 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLLK 407

Query: 122 EM 123
           EM
Sbjct: 408 EM 409


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D    +FG+   RG +PD++ + T+I G C + + + A  L +++  V   P+ +T  
Sbjct: 90  HVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCN 149

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  +C +G++D    +F  M+ KG K +V +YS  I+GY K + +  A ++++EM   
Sbjct: 150 SLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHR 209

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + PN             A RP +A  L+  M   G+ PD L  STL D
Sbjct: 210 GVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLD 258



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 92/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D   K+F  +  +GL+PD+ +Y+  I GYC + ++DEA++LF++++   + PN++T+  
Sbjct: 161 IDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNT 220

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A C+  R  DA ++F KM   G   +++ YS L+DG+ K  N+     +++EM    
Sbjct: 221 LIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRL 280

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++            + +  +A ++   ++  G+ PD    + L D
Sbjct: 281 VKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVD 328



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   GL PDI+ Y+T++ G+C    LDE + LF+++    +KP+ + +TI+I+  C
Sbjct: 237 LFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMC 296

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           +  ++ DA  + S+++ +G K +V TY+ L+DG  +  ++  A  ++ +M E+   P   
Sbjct: 297 RSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSC 356

Query: 134 GR------------PTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                          +  +QL   M   G   D +  + L D+
Sbjct: 357 SYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKDF 399



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 68/132 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +LD  L LF ++  R ++PD++ Y  II G C   ++ +A ++  +L    LKP+  
Sbjct: 262 KQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVH 321

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+D  C+EG + +A  +F KM E G      +Y+ L+ G  +  +  +   +  EM
Sbjct: 322 TYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEM 381

Query: 124 CENNISPNIAGR 135
            +     +   R
Sbjct: 382 ADRGFYADAVTR 393



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD AL  F ++ DR  +P II +N ++     + + +  V LF+++    +K N  T +
Sbjct: 20  NLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLS 79

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+ FC    +D    +F K L++G K +VV ++ LIDG  +    + A  + +EM   
Sbjct: 80  ILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLV 139

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
              P++             G+  +  +++  M+  G+ PD
Sbjct: 140 GCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPD 179



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++  +L   GL+PD+ TY  ++ G C    + EA++LF K+      P S ++ +L+ 
Sbjct: 304 AKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQ 363

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
              +         +  +M ++G  A+ VT + L D
Sbjct: 364 GCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKD 398



 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 12/100 (12%)

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-- 133
           G +DDA   F++ML++ P+  ++ ++ L+    + +  ++   +++EM    I  N+   
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 134 ----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                             ++   L+ G  PD ++ +TL D
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLID 118


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 76/130 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L  A++L  +  ++GL PD+ TYN+II G+C    + +A QL E +    + PN
Sbjct: 631 LLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPN 690

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  CK G ++ A  +F  +  KG   N VTY+ +IDGY KS N+  AF +++
Sbjct: 691 IITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFD 750

Query: 122 EMCENNISPN 131
           EM    + P+
Sbjct: 751 EMTLKGVPPD 760



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 46/212 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +LF  +  +GL  + +TY TII GYC    L +A +LF+++T   + P+
Sbjct: 701 LCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPD 760

Query: 62  SITFTILI----------------------------------DAFCKEGRMDDATMMFSK 87
           S  ++ LI                                  D FCK G++ +A  +   
Sbjct: 761 SFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLED 820

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP------------NIAGR 135
           M++K  K + VTY+ LID + K+  +K A   + +M + N+ P            N+AGR
Sbjct: 821 MVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGR 880

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            +E   L+D M+   I PDG+  S + D +L+
Sbjct: 881 RSEMFALFDEMIAKDIEPDGVTWSVMIDAHLK 912



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 11/181 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A +L   +  +G+ P+IITYN +I G C    ++ A +LF+ +    L  N++
Sbjct: 668 KQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAV 727

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +ID +CK G +  A  +F +M  KG   +   YS LIDG  K  N + A  ++ E 
Sbjct: 728 TYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLES 787

Query: 124 CENNISPNI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            +   +              +G+  EA QL + M+   + PD +  + L DY+ ++   +
Sbjct: 788 VQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLK 847

Query: 173 E 173
           E
Sbjct: 848 E 848



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A     ++ +RGL+P++ TY  +I GYC    +  A + F+++    + PN
Sbjct: 526 LCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPN 585

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +  T LID +CKEG   +AT +F  ML +    +V TYS LI G  ++  ++ A ++  
Sbjct: 586 DVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLS 645

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           E  E  + P++             G   +A QL++ M + GI P+
Sbjct: 646 EFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPN 690



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E     A+++   +  +G++PD++ YN++I G C   +++EA     ++    LKPN 
Sbjct: 492 VQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNV 551

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  LI  +CK G M  A   F +ML  G   N V  + LIDGY K  +   A  ++  
Sbjct: 552 YTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRC 611

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           M   ++ P++             G+   AM+L    L  G++PD
Sbjct: 612 MLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPD 655



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 12/154 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +L  ++ ++G  P ++TYN +I G C    +DEA +L + +    L  +  T++ILID F
Sbjct: 257 RLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGF 316

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K+ R  +A +M  +M  KG K   V Y+ LIDG+ +  +   AF V EEM    +  N+
Sbjct: 317 GKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNL 376

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPD 154
                        G   +A  L + M+  GI PD
Sbjct: 377 FTYNALVKGVCKFGDMEKADALLNEMIMVGIKPD 410



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ A ++F  +   G++P+ + Y T+I G+    R  EAV++ + +    ++P+
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPD 515

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I   CK  +M++A     +M+E+G K NV TY  LI GY KS  M+ A   ++
Sbjct: 516 VLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFK 575

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    I+PN              G  TEA  ++  ML   + PD    S L
Sbjct: 576 EMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSAL 627



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE +      L  ++    L P   T   II G C    +++A ++FE +  + +KPN+
Sbjct: 422 LKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNA 481

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + +T LI    +EGR  +A  +   M +KG + +V+ Y+ +I G  KS+ M+ A D   E
Sbjct: 482 VIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVE 541

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M E  + PN+            +G    A + +  ML  GI P+ ++ + L D
Sbjct: 542 MIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALID 594



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE     A  +F  +  R + PD+ TY+ +I G     +L  A++L  +     L P+  
Sbjct: 598 KEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVF 657

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I  FCK+G +  A  +   M +KG   N++TY+ LI+G  K+  ++ A ++++ +
Sbjct: 658 TYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGI 717

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               ++ N             +G  ++A +L+D M   G+ PD  + S L D
Sbjct: 718 PGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALID 769



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++  +GL+P  + Y  +I G+       EA ++ E++    +K N  T+  L+   CK G
Sbjct: 331 EMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFG 390

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
            M+ A  + ++M+  G K +  TY+ +I+GY K QN     D+  EM ++N+ P      
Sbjct: 391 DMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCG 450

Query: 133 --------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                    G   +A ++++ M+  G+ P+ ++ +TL   ++Q    QE
Sbjct: 451 MIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQE 499



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 12/181 (6%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   L  A + F  +  R L P+ +TY  ++ GY    R  E   LF+++    ++P+ +
Sbjct: 842  KTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGV 901

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T++++IDA  KEG       +   ML+KG   +      LID   + +++     V E++
Sbjct: 902  TWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKI 961

Query: 124  CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             E  ++ ++            AG+   A ++  SM+R   +PD   L+ L +    S+ S
Sbjct: 962  EEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDS 1021

Query: 172  Q 172
            +
Sbjct: 1022 E 1022



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L+   + +  + +  +  D+ TY  +I  +       E  +L  ++      P+
Sbjct: 211 LLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPS 270

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ++I   C+ G +D+A  +   M +KG  A+V TYS LIDG+ K +    A  + E
Sbjct: 271 LVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLE 330

Query: 122 EMCENNISP-NIA-----------GRPTEAMQLYDSMLRNGI 151
           EM    + P ++A           G   EA ++ + ML  G+
Sbjct: 331 EMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGV 372



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   D A+  F      G    ++  N ++      N+L+   + +  +    +  +  
Sbjct: 178 KKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVY 237

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI+A  + G   +   +  +M EKG   ++VTY+ +I G  ++  +  AF++ + M
Sbjct: 238 TYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLM 297

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  +  ++              R TEA  + + M   G+ P  +  + L D  ++   S
Sbjct: 298 DKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDS 357

Query: 172 QE 173
            E
Sbjct: 358 GE 359


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 16/175 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
             G++   G EPD++T+ +++ GYC  NR+++A+ LF+++  +  KPN +T+T LI   C
Sbjct: 140 FLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLC 199

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K   ++ A  +F++M   G + NVVTY+ L+ G  +      A  +  +M +  I PN+ 
Sbjct: 200 KNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVI 259

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLADYNLQSSGSQ 172
                       G+  EA +LY+ M++  + PD    G L++ L  Y L     Q
Sbjct: 260 TFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQ 314



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   ++ A+ LF Q+   G +P+++TY T+I   C    L+ AV+LF ++     +PN 
Sbjct: 164 CHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNV 223

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  L+   C+ GR  DA  +   M+++  + NV+T++ LID + K   +  A ++Y  
Sbjct: 224 VTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNV 283

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M + ++ P++             G   EA Q++  M RNG  P+ ++ +TL
Sbjct: 284 MIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTL 334



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A++LF Q+   G  P+++TYN ++ G C + R  +A  L   +   +++PN
Sbjct: 198 LCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPN 257

Query: 62  SITFTILIDAFCKEGR-----------------------------------MDDATMMFS 86
            ITFT LIDAF K G+                                   +D+A  MF 
Sbjct: 258 VITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFY 317

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAG 134
            M   G   N V Y+ LI G+ KS+ ++    ++ EM +  +  N            + G
Sbjct: 318 LMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVG 377

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           RP  A ++++ M      PD    + L D
Sbjct: 378 RPDVAQEVFNQMSSRRAPPDIRTYNVLLD 406



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 75/123 (60%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A ++F Q++ R   PDI TYN ++ G C   ++++A+ +FE +   ++  N +T+TI+
Sbjct: 380 DVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTII 439

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   CK G+++DA  +F  +  KG K NV+TY+ +I G+ +   +  A  ++++M E+  
Sbjct: 440 IQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGF 499

Query: 129 SPN 131
            PN
Sbjct: 500 LPN 502



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  +K+F +++ +G+  + ITY  +I GYC + R D A ++F +++  +  P+  
Sbjct: 340 KSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIR 399

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+D  C  G+++ A M+F  M ++    N+VTY+ +I G  K   ++ AFD++  +
Sbjct: 400 TYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSL 459

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
               + PN+    T            EA  L+  M  +G +P+
Sbjct: 460 FSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A ++F  +   G  P+ + Y T+I G+C   R+++ +++F +++   +  N+IT+T+
Sbjct: 309 LDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTV 368

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C  GR D A  +F++M  +    ++ TY+ L+DG   +  ++ A  ++E M +  
Sbjct: 369 LIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKRE 428

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI             G+  +A  L+ S+   G+ P+ +  +T+
Sbjct: 429 MDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTM 474



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + LF Q+   G+ P + T N ++   C  ++   A     K+  +  +P+ +TFT L
Sbjct: 100 DVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSL 159

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++ +C   R++DA  +F ++L  G K NVVTY+ LI    K++++  A +++ +M  N  
Sbjct: 160 LNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGS 219

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN+             GR  +A  L   M++  I P+ +  + L D
Sbjct: 220 RPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALID 266



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL +F  +  R ++ +I+TY  II G C L ++++A  LF  L    +KPN IT+T 
Sbjct: 414 VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTT 473

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           +I  FC+ G + +A  +F KM E G   N   Y
Sbjct: 474 MISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             + AL LF ++      P II +  ++     +NR D  + LFE++  + + P   T  
Sbjct: 63  QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++   C   +   A+    KM++ G + ++VT++ L++GY     ++ A  +++++   
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLA 162
              PN+    T             A++L++ M  NG  P+ +  + L 
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALV 230


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ + +LF Q+ + GL PD++TYN++I GY  +  L+E   LF ++  V   P+
Sbjct: 299 LCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPD 358

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+ +CK  +M  A   FS+M   G K NVVTYS LID + K   M+ A  ++ 
Sbjct: 359 IITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFV 418

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    + PN             AG  TEA +L + ML+ G+  + +  + L D
Sbjct: 419 DMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLD 472



 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F ++ + GL+P+++TY+T+I  +C    +  A++LF  +    L PN  T+T LID
Sbjct: 378 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK G + +A  + + ML+ G K N+VTY+ L+DG  K+  M  A +V+  M ++ ISP
Sbjct: 438 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 497

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N             A R  +AM++   M    I PD +L  ++
Sbjct: 498 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSI 540



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 12/186 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   ++ A+K+  Q+T+  ++PD+I Y +II G+CS  +L+E   + E++    +  N 
Sbjct: 510 IKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANP 569

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +  T +IDA+ K G+  DA   F +M + G +A +VTY  LIDG  K+  ++ A D +  
Sbjct: 570 VISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCR 629

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M    + PN+A   +             A +L+D M   G+ PD    + L D NL+   
Sbjct: 630 MLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGN 689

Query: 171 SQEHCI 176
            QE  +
Sbjct: 690 LQEALV 695



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KLF  +   GL P+  TY ++I   C    L EA +L   +    +K N +
Sbjct: 406 KEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIV 465

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+D  CK GRM +A  +F  ML+ G   N   Y+ L+ GY K++ M+ A  + ++M
Sbjct: 466 TYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQM 525

Query: 124 CENNISPNI-----------AGRPTEAMQL-YDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E NI P++           + R  E  +L  + M   GI  + ++ +T+ D   ++  S
Sbjct: 526 TECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKS 585

Query: 172 QE 173
            +
Sbjct: 586 SD 587



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K F  +   G+ P + TYN +I   C    L+ + +LF ++  + L P+ +T+  LID +
Sbjct: 275 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 334

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G +++   +F++M + G   +++TY+ LI+ Y K + M  AF+ + EM  N + PN+
Sbjct: 335 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 394

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                        G    A++L+  M R G++P+    ++L D N ++    E
Sbjct: 395 VTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTE 447



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  F ++ D G+E  I+TY  +I G C    ++ AV  F ++  + L+PN   +T LID
Sbjct: 588 ALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLID 647

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   ++ A  +F +M  +G   ++  ++ LIDG  K  N++ A  +   M E  I  
Sbjct: 648 GLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF 707

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLL 157
           ++             G   +A + ++ M+  GI+P+ +L
Sbjct: 708 DLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVL 746



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A+  F ++   GL+P++  Y ++I G C  N ++ A +LF+++ C  + P+
Sbjct: 614 LCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPD 673

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              FT LID   K G + +A ++ S+M E   + ++  Y+ L+ G+ +   +  A   + 
Sbjct: 674 ITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFN 733

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM E  I P               G+  EA++L + M R G++ +
Sbjct: 734 EMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITE 778



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++F  +   G+ P+   Y  ++ GY    R+++A+++ +++T   +KP+
Sbjct: 474 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 533

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +  +I   C + ++++  ++  +M  +G  AN V  + +ID YFK+     A + ++
Sbjct: 534 LILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQ 593

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  +   I            AG    A+  +  ML  G+ P+  + ++L D
Sbjct: 594 EMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLID 647



 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            ++ +   +  L  L+EA + F ++   +  P + +   L+    K G        F+ M
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 280

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           +  G   +V TY+ +ID   K  +++++  ++ +M E  +SP++             G  
Sbjct: 281 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 340

Query: 137 TEAMQLYDSMLRNGIMPD 154
            E   L++ M   G +PD
Sbjct: 341 EEVASLFNEMKDVGCVPD 358


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++T +G+  D++TY+T+I G+C   +L EA+ L  ++    + PN  T+ IL+D
Sbjct: 218 AYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CKEG++ +A  + + ML+   K +V+TYS L+DGYF    +K A  V+  M    ++P
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTP 337

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++                 EA+ L+  M +  ++P  +  S+L D
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 74/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +     L  ++ DRG   D+ITY+++I G C    LD A+ LF K+   +++PN
Sbjct: 384 LCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTIL+D  CK GR+ DA  +F  +L KG   NV TY+ +I+G+ K   ++ A  +  
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLS 503

Query: 122 EMCENNISPN 131
           +M +N   PN
Sbjct: 504 KMEDNGCIPN 513



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 82/152 (53%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  ++  G+ PD+ TY  +I G+C    +DEA+ LF+++    + P  +T++ LID
Sbjct: 323 AQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+     +  +M ++G  A+V+TYS LIDG  K+ ++  A  ++ +M +  I P
Sbjct: 383 GLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRP 442

Query: 131 NI------------AGRPTEAMQLYDSMLRNG 150
           NI             GR  +A +++  +L  G
Sbjct: 443 NIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL    +L  +G + + ++Y T+I G C +     A++L  K+     KPN   ++
Sbjct: 144 QVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYS 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +IDA CK   + +A  +FS+M  KG  A+VVTYS LI G+     +K A  +  EM   
Sbjct: 204 TIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLK 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I+PN+             G+  EA  +   ML+  + PD +  STL D
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +    ++PD+ITY+T++ GY  +  + +A  +F  ++ + + P+
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPD 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILI+ FCK   +D+A  +F +M +K     +VTYS LIDG  KS  +   +D+ +
Sbjct: 339 VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLID 398

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM +        G+P + +  Y S++ +G+  +G L   +A +N
Sbjct: 399 EMRDR-------GQPADVIT-YSSLI-DGLCKNGHLDRAIALFN 433



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL LF ++  + + P I+TY+++I G C   R+     L +++       + IT++ 
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSS 414

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G +D A  +F+KM ++  + N+ T++ L+DG  K   +K A +V++++    
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              N+             G   EA+ +   M  NG +P+     T+
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETI 520



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 64/122 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ LF ++ D+ + P+I T+  ++ G C   RL +A ++F+ L       N
Sbjct: 419 LCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLN 478

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ++I+  CK+G +++A  M SKM + G   N  T+  +I   FK      A  +  
Sbjct: 479 VYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLR 538

Query: 122 EM 123
           +M
Sbjct: 539 QM 540



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   A+ L  +L  +G++PD+IT N +I  +C + ++     +  K+      P+++T  
Sbjct: 74  HYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLN 133

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C +G++  A     K+L +G + N V+Y+ LI+G  K  + + A  +  ++   
Sbjct: 134 TLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGR 193

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              PN+    T            EA  L+  M   GI  D +  STL
Sbjct: 194 LTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 240



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+  F ++      P II +N I+  +  +     AV L  +L    ++P+ IT  
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+ FC  G++     + +K+L++G   + VT + LI G      +K A   ++++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 127 NISPN 131
               N
Sbjct: 159 GFQLN 163



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F  L  +G   ++ TYN +I G+C    L+EA+ +  K+      PN
Sbjct: 454 LCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 513

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           + TF  +I A  K+   D A  +  +M+ +G
Sbjct: 514 AFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
           S+  +D+AV  F ++ C++  P  I F  ++D+F K      A  +  ++  KG + +++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLI 95

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSM 146
           T + LI+ +     +   F V  ++ +    P+            + G+  +A+  +D +
Sbjct: 96  TLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKL 155

Query: 147 LRNGIMPDGLLLSTLAD 163
           L  G   + +  +TL +
Sbjct: 156 LAQGFQLNQVSYATLIN 172


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++AA  LF ++  RGL PD +TYN++I GY  + RLD+ V  FE++  +  +P+ I
Sbjct: 145 KEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVI 204

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK G++      F +M + G K NVV+YS L+D + K   M+ A   Y +M
Sbjct: 205 TYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDM 264

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + PN              G  ++A +L D M + G+  + +  + L D
Sbjct: 265 RRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALID 316



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L   L+ F ++   GL+P++++Y+T++  +C  + + +A++ +  +  + L PN  T+T 
Sbjct: 219 LPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTS 278

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA+CK G + DA  +  +M + G + NVVTY+ LIDG    + +K A +++ +M    
Sbjct: 279 LVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAG 338

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN+A                 A++L D M   GI PD LL  T 
Sbjct: 339 VIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTF 384



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 12/177 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  ALK +  +   GL P+  TY +++  YC +  L +A +L ++++ V ++ N +
Sbjct: 250 KEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVV 309

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  C   R+ +A  +F KM+  G   N+ +Y+ LI G+ K++NM  A ++ +EM
Sbjct: 310 TYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEM 369

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
               I P++    T             A  + + M   GI  +  + +TL D   +S
Sbjct: 370 KGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKS 426



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   + F  +   G +P + TYN +I   C    ++ A  LFE++    L P+++T+  +
Sbjct: 115 DGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSM 174

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID + K GR+DD    F +M     + +V+TY+ LI+ + K   +    + + EM ++ +
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGL 234

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN+    T            +A++ Y  M R G++P+    ++L D
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVD 281



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI+E   + AL+ F ++    + P   + N ++  +  L + D   + F+ +     KP
Sbjct: 72  VLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKP 131

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              T+ I+ID  CKEG ++ A+ +F +M  +G   + VTY+ +IDGY K   +      +
Sbjct: 132 TVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFF 191

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM   +  P++             G+  + ++ +  M ++G+ P+ +  STL D
Sbjct: 192 EEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVD 246



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 63/105 (60%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A +LFG++   G+ P++ +Y  +I G+     +D A++L +++    +KP+ + +  
Sbjct: 324 IKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGT 383

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
            I + C   +++ A ++ ++M EKG KAN   Y+ L+D YFKS+N
Sbjct: 384 FIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSEN 428



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K  ++D AL+L  ++  RG++PD++ Y T I   C L +++ A  +  ++    +K N
Sbjct: 353 FVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKAN 412

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +T L+DA+ K     +   +  +MLE   +   VT+  LIDG  K++ +  A D + 
Sbjct: 413 TFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFG 472

Query: 122 EMCEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            +  +  +  N A             +   A  L++ M + G++PD    ++L D  L+
Sbjct: 473 RISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLK 531



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           +T+  +I G C    + +A+  F +++    L+ N+  +T +ID  CKE +++ AT +F 
Sbjct: 449 VTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFE 508

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +M +KG   +   Y+ LIDG  K  N+  A  + ++M E
Sbjct: 509 QMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAE 547



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 8   LDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +  A+  FG+++ D GL+ +   Y  +I G C  ++++ A  LFE++    L P+   +T
Sbjct: 464 VSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYT 523

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKG 92
            LID   K+G +  A  +  KM E G
Sbjct: 524 SLIDGKLKQGNVVQALALRDKMAEIG 549


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 99/178 (55%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL    ++ +  ++P ++ YN +I GYC L R+DEA +L  ++    +KP+ +T++ 
Sbjct: 346 LDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYST 405

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++  +CK G  D A  +  KML+KG   + +TYS LI G  + + +  A +++E+M +  
Sbjct: 406 ILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLG 465

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           + P+              G   +A+ L+D M++ G++PD +  S L D   +S+ ++E
Sbjct: 466 LQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKE 523



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 12/179 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+ A+ L GQ+ +RGL  +  T+  +I G+C    LD+A+   +++   +++P+ + + 
Sbjct: 310 NLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYN 369

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI+ +CK GRMD+A  +  +M  KG K +VVTYS ++ GY K  +  SAF++  +M + 
Sbjct: 370 VLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKK 429

Query: 127 NISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            + P+       I G     R  +A +L++ ML+ G+ PD    +TL D + +    Q+
Sbjct: 430 GVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQK 488



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A K+F ++   GL PD ++YNT++ GYC    L EA+ +F ++    + P+
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPD 294

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT LI A C+ G ++ A  +  +M E+G + N  T++ LIDG+ ++  +  A    +
Sbjct: 295 VVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMK 354

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  I P++             GR  EA +L   M   G+ PD +  ST+
Sbjct: 355 EMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTI 406



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 91/162 (56%), Gaps = 12/162 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +L  ++  +G++PD++TY+TI+ GYC +   D A +L  K+    + P++IT++
Sbjct: 380 RMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYS 439

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+E R+ DA  +F KML+ G + +  TY+ LIDG+ K  N++ A  +++EM + 
Sbjct: 440 SLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKK 499

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            + P++            + R  EA +L   +     +PD +
Sbjct: 500 GVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNI 541



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 85/150 (56%), Gaps = 4/150 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA +L G + + G+ P ++T+NT++ G C   R+++A ++F+++    L P+ +++  
Sbjct: 206 VDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNT 265

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +CK G + +A  +F++M +KG   +VVT++ LI    ++ N++ A  +  +M E  
Sbjct: 266 LVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERG 325

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
           +  N          L D   RNG + D LL
Sbjct: 326 LRMN----EFTFTALIDGFCRNGFLDDALL 351



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)

Query: 9   DAALKLFGQ-LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + AL + G  +   G  P+++TYNT++  +C    +D A +L   +    ++P+ +TF  
Sbjct: 171 EEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNT 230

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  CK GRM+DA  MF +M  +G   + V+Y+ L+ GY K+  +  A  V+ EM +  
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKG 290

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++            AG    A+ L   M   G+  +    + L D
Sbjct: 291 VVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALID 338



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 91/174 (52%), Gaps = 13/174 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLK 59
           + + +  L +A +L   +   G+ P++ TYN ++   C+  + +EA+ +  + +      
Sbjct: 128 LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCA 187

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN +T+  L+ AFC+ G +D A  +   M E G + ++VT++ +++G  K+  M+ A  +
Sbjct: 188 PNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKM 247

Query: 120 YEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++EM    ++P+             AG   EA+ ++  M + G++PD +  ++L
Sbjct: 248 FDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSL 301



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 19/163 (11%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  AL L  ++  +G+ PD++TY+ +I G     R  EA +L  KL      P++I
Sbjct: 482 KEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNI 541

Query: 64  TF---------------TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            +                 L+  F  +G M+ A  ++  ML++  K +   YS LI G+ 
Sbjct: 542 KYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHC 601

Query: 109 KSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGI 151
           +  N+  A   ++++     SPN     T  + L   +   G+
Sbjct: 602 RGGNIMKALSFHKQLLRCGFSPN----STSTISLVRGLFEEGM 640



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L  A +LF ++   GL+PD  TY T+I G+C    + +A+ L +++    + P+
Sbjct: 445 LCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPD 504

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+++LID   K  R  +A  +  K+  + P  + + Y  L+    ++   KS   + +
Sbjct: 505 VVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMH-CCRTAEFKSVVALLK 563

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                    ++ G   +A ++Y SML      DG + S L
Sbjct: 564 GF-------SMKGLMNQADKVYQSMLDRHWKLDGSVYSVL 596



 Score = 40.8 bits (94), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K++  + DR  + D   Y+ +I G+C    + +A+   ++L      PNS +   
Sbjct: 571 MNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTIS 630

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID-------GYFKSQN 112
           L+    +EG   +A  +  ++L     A+  T   LID       GYF++Q 
Sbjct: 631 LVRGLFEEGMTVEADNVIQELLNCCSLADAETSKALIDLNRKEGVGYFQAQG 682


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT+I GY  L  LD+  +L   +    + P+  
Sbjct: 148 KEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T+LI+  CKE +MD+A  +F++ML+KG   N VT++ LIDG+ KS  +  A ++Y++M
Sbjct: 208 TNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                SP++             G   +A  L   M   G+ PD +  +TL D
Sbjct: 268 LRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLID 319



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D+GL P+ +T+ T+I G+C   R+D A+++++++      P+
Sbjct: 216 LCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   C++G +  A  +  +M  KG K + +TY+ LIDG  K  ++++AF++ +
Sbjct: 276 LITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M E +I   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPE 380



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +L +++    ++ +
Sbjct: 286 LCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K    TY+ +I+G+ K  ++K+A  + +
Sbjct: 346 DVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLK 405

Query: 122 EMCENNISP 130
           EM  +   P
Sbjct: 406 EMQRDGHVP 414



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +L  ++ +  +  D + Y  +I G C   R  +A ++  ++  V LKP + 
Sbjct: 323 KEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +  A+ +  +M   G    VVT
Sbjct: 383 TYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K  H    L L  Q+   G+ PD+ T   +I   C LNR+D A     K+  +  +P+
Sbjct: 55  IAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPD 114

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + TFT LI   C EG++ +A  +F KM+ +G + NVVTY  LI+G  K + +  AF+++ 
Sbjct: 115 ATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFS 174

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    ISPNI    +                L + M+ + IMPD   L+T+ D
Sbjct: 175 EMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 228



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K C       L  ++ D  + PD+ T NT++   C    + EA  + + +    ++PN
Sbjct: 195 LCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  C    +D A  +F  M+ K   ANV++Y+ LI+GY K Q++  A  ++E
Sbjct: 255 VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFE 314

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    ++PN              GR  +A+ L+  M+  G +PD +   TL+DY
Sbjct: 315 EMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 369



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 5/161 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +    ++I+YNT+I GYC +  +D+A+ LFE+++  +L PN++T+  
Sbjct: 271 VDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 330

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+ DA  +F +M+ +G   ++VTY  L D   K++++  A  + + +  +N
Sbjct: 331 LIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN 390

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
             P+I    T    + D M R G + D   L S L+   LQ
Sbjct: 391 WDPDIQIYTT----ILDGMCRAGELEDARDLFSNLSSKGLQ 427



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 13/172 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++  +G+ PDI TYN++I   C+L        L  ++   ++ PN + F+ ++DA CKEG
Sbjct: 663 KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEG 722

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG-- 134
            +  A  +   M+++G + +VVTY+ L+DG+     M  A  V++ M      PN+    
Sbjct: 723 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 782

Query: 135 ----------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                     R  +AM L + M   G++ D +  +TL  + L   G  +H I
Sbjct: 783 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLI-HGLCHVGRLQHAI 833



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +G  P++ +YN +I GYC + R+D+A+ L E+++   L  +++T+  
Sbjct: 759 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 818

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+  A  +F +M+  G   ++VTY  L+D   K+ ++  A  + + +  +N
Sbjct: 819 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 878

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +  +I            AG    A  L+ ++   G+ PD
Sbjct: 879 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 917



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 19/189 (10%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++  RG  PD++TY T+    C    LD+A+ L + +      P+ 
Sbjct: 336 CHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDI 395

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +T ++D  C+ G ++DA  +FS +  KG + NV TY+ +I G  K   +  A  ++ E
Sbjct: 396 QIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSE 455

Query: 123 MCENNISPNIAG---------RPTEAM---QLYDSMLRNGIMPD----GLLLSTLADYNL 166
           M +N  SPN            R  EA+   +L + ML  G   D     LL+  L+D  L
Sbjct: 456 MNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGL 515

Query: 167 QSSGSQEHC 175
             S  Q  C
Sbjct: 516 DQSVKQILC 524



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ L   +     +PDI  Y TI+ G C    L++A  LF  L+   L+PN
Sbjct: 370 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 429

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I   CK+G + +A+ +FS+M + G   N  TY+ +  G+ ++       ++ E
Sbjct: 430 VWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLE 489

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 490 EMLARGFSVDVS 501



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 23/163 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  RG+EPD++TY  ++ G+C  + +DEAV++F+ +      PN
Sbjct: 718 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN 777

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+ +C+  RMD A  +  +M  +G  A+ VTY+ LI G               
Sbjct: 778 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG--------------- 822

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +C         GR   A+ L+  M+ +G +PD +    L DY
Sbjct: 823 -LCH-------VGRLQHAIALFHEMVASGQIPDLVTYRILLDY 857



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF +++ + L P+ +TYNT+I G C + RL +A+ LF ++      P+ +T+  
Sbjct: 306 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 365

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L D  CK   +D A  +   +       ++  Y+ ++DG  ++  ++ A D++  +    
Sbjct: 366 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 425

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + PN+             G   EA +L+  M +NG  P+         YNL + G
Sbjct: 426 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND------CTYNLITRG 474



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 70/125 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  Q++ +GL  D +TYNT+I G C + RL  A+ LF ++      P+ +T+ I
Sbjct: 794 MDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRI 853

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK   + +A ++   +      A+++ Y+  IDG  ++  +++A D++  +    
Sbjct: 854 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG 913

Query: 128 ISPNI 132
           + P++
Sbjct: 914 LQPDV 918



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 3/145 (2%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++   G  PD++TY  ++   C  + L EA+ L + +    L  + 
Sbjct: 824 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADI 883

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + + I ID  C+ G ++ A  +FS +  KG + +V TY+ +I G  K   +  A  ++ +
Sbjct: 884 LVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRK 943

Query: 123 MCENNISPNIAGRPTEAMQLYDSML 147
           M EN+I  N      +   +Y  ++
Sbjct: 944 MDENDIWSNSTSSRNQKSLIYQKIM 968



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 25/169 (14%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+ PD+ T N +I  +C L RL  A  +  KL  +  +P+ +T+ 
Sbjct: 596 HYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYG 655

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L++  C             KM+ KG   ++ TY+ LI         K    +  EM  +
Sbjct: 656 TLMNGLC-------------KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNS 702

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I PN+             G    A  + D M++ G+ PD +  + L D
Sbjct: 703 KIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMD 751



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL  A+ L   +    L+ DI+ YN  I G C    L+ A  LF  L+   L+P+
Sbjct: 858 LCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 917

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
             T+ I+I   CK G +D+A  +F KM E    +N
Sbjct: 918 VRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSN 952


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA KLF ++  R + PD I ++ +ICG     ++ EA +LF ++     +P+ +T+T LI
Sbjct: 233 AAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALI 292

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D +CK G M  A  + ++M++ G   NVVTY+ L DG  KS  + +A ++  EMC   + 
Sbjct: 293 DGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQ 352

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            NI            AG   +A++L + M   G+ PD +  +TL D
Sbjct: 353 LNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMD 398



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF ++  +G EPD +TY  +I GYC L  + +A  L  ++  + L PN +T+T L D
Sbjct: 269 ADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALAD 328

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G +D A  +  +M  KG + N+ TY+ +++G  K+ N+  A  + EEM E  + P
Sbjct: 329 GLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHP 388

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +              G   +A +L   ML  G+ P  +  + L +
Sbjct: 389 DTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMN 433



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 17/173 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+E H      L  ++  +G  PD+++Y TII GYC +  L + VQL +++    LKPN 
Sbjct: 126 IREAH-----HLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNL 180

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++ +I   CK G++ +   +  +M+++G   + V Y+ LIDG+ K  N ++A+ ++ E
Sbjct: 181 YTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSE 240

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P+             +G+  EA +L++ M++ G  PD +  + L D
Sbjct: 241 MEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALID 293



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 12/151 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+  ++  RG+ PD + Y T+I G+C L     A +LF ++   ++ P+SI F+ LI   
Sbjct: 201 KVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGL 260

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
              G++ +A  +F++M++KG + + VTY+ LIDGY K   MK AF ++ +M +  ++PN+
Sbjct: 261 SGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNV 320

Query: 133 ------------AGRPTEAMQLYDSMLRNGI 151
                       +G    A +L   M R G+
Sbjct: 321 VTYTALADGLCKSGELDTANELLHEMCRKGL 351



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++  +GL+ +I TYNTI+ G C    + +AV+L E++    L P+
Sbjct: 330 LCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPD 389

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T L+DA+ K G M  A  +  +ML++G +  VVT++ L++G   S  ++    + +
Sbjct: 390 TITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLK 449

Query: 122 EMCENNISPNIAGRPTEAMQ------------LYDSMLRNGIMPD 154
            M E  I PN A   +   Q            +Y  M   G++PD
Sbjct: 450 WMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ DRGL+P ++T+N ++ G C   +L++  +L + +    + PN+ T+  ++ 
Sbjct: 409 ARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMK 468

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NI 128
            +C    M  +T ++  M  +G   +  TY+ LI G+ K++NMK A+ +++EM E   N+
Sbjct: 469 QYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNL 528

Query: 129 SPN-----IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           + +     I G     +  EA QL++ M R G++    + +   D N +  
Sbjct: 529 TASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEG 579



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+   +L   + ++G+ P+  TYN+I+  YC  N +  + +++  +    + P+S T+ I
Sbjct: 441 LEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNI 500

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           LI   CK   M +A  +  +M+EK       +Y+ LI G+FK + +  A  ++EEM
Sbjct: 501 LIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEM 556



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 87/176 (49%), Gaps = 13/176 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNT-IICGYCSLNRLDEAVQLFEKLTCVQLK 59
           +L++   L+ A K F +L + G+     + N  + C     + L   +++F +   + + 
Sbjct: 48  VLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVC 107

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            N+ ++ IL+++  + G++ +A  +  +M  KG   +VV+Y+ +IDGY     ++    +
Sbjct: 108 WNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQL 167

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +EM    + PN+            +G+  E  ++   M++ G+ PD ++ +TL D
Sbjct: 168 VKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLID 223



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 55/105 (52%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD  TYN +I G+C    + EA  L +++   +    + ++  LI  F K  ++ +
Sbjct: 489 QGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLE 548

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           A  +F +M  +G  A+   Y+  +D  ++  NM++  ++ +E  E
Sbjct: 549 ARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIE 593


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 48/219 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +    +L   +   G+ PD+I+YNT+I G+C    +DEA +L E +  V LKPN
Sbjct: 145 LCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPN 204

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF------------- 108
           S ++  L+  +CK GR+D A  +F KML  G    VVTY+ ++ G F             
Sbjct: 205 SFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYL 264

Query: 109 ----------------------KSQNMKSAFDVYEEMCENNISPNI------------AG 134
                                 KS  +  AF +++ +C   +  NI             G
Sbjct: 265 NMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGG 324

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           R  +AM L+ ++  NG++PD +    +A+ NL   GS E
Sbjct: 325 RKEDAMDLFAAIPANGLVPDVVTYRVVAE-NLIEEGSLE 362



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 15/160 (9%)

Query: 6   CHLDAALK---LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C +D   K   LF ++ + G+ P+I+ +NTI+C  C   R+ E  +L + + C+ ++P+ 
Sbjct: 111 CSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDV 170

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I++  LID  C  G +D+A+ +   M+  G K N  +Y+ L+ GY K+  + SA+ ++ +
Sbjct: 171 ISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRK 230

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNG 150
           M  N I+P +              R +EA +LY +M+ +G
Sbjct: 231 MLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 270



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   +   G+ P+   +N     Y     +D+A+ +F K+    L P+++++  LIDA C
Sbjct: 17  LLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALC 76

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K GR+DDA + F++M+ +G   N+V +S L+ G       +   +++ EM    I PNI 
Sbjct: 77  KLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIV 136

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       GR  E  +L DS+   G+ PD +  +TL D
Sbjct: 137 FFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLID 178



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 13/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA +K F Q+ + G+ P+I+ +++++ G CS+++ ++  +LF ++  V + PN + F  +
Sbjct: 83  DAEVK-FNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTI 141

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   CKEGR+ +   +   +   G + +V++Y+ LIDG+  +  +  A  + E M    +
Sbjct: 142 LCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGL 201

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            PN             AGR   A  L+  ML NGI P  +  +T+
Sbjct: 202 KPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTI 246



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D+A  LF ++   G+ P ++TYNTI+ G     R  EA +L+  +     K    
Sbjct: 217 KAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIY 276

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +++  CK   +D+A  MF  +  KG + N++T++ +I    K    + A D++  +
Sbjct: 277 TYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAI 336

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             N + P++             G   E   L+ +M +NG  P+  +L+ L 
Sbjct: 337 PANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 387



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 33  IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++ GY +   L E   L   +    + PN   F I   A+ K G +D A  +F+KM + G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              + V+Y  LID   K   +  A   + +M    ++PNI              +  +  
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           +L+  ML  GI P+ +  +T+
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTI 141



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 59/122 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F  L  +GL+ +IIT+  +I       R ++A+ LF  +    L P+ +T+ +
Sbjct: 291 VDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRV 350

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +   +EG +++   +FS M + G   N    + L+       ++  A     ++ E N
Sbjct: 351 VAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERN 410

Query: 128 IS 129
            S
Sbjct: 411 FS 412



 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 41/103 (39%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A+ LF  +   GL PD++TY  +         L+E   LF  +      PN
Sbjct: 320 LLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPN 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           S     L+      G +  A    SK+ E+       T S LI
Sbjct: 380 SQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLI 422


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++  +GL  D++TY TI+ G C +     A+ L  K+    +KP+ + ++ +ID
Sbjct: 29  AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIID 88

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G   DA  +FS+MLEKG   NV TY+C+IDG+        A  +  +M E  I+P
Sbjct: 89  RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINP 148

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G+  EA +L D ML   I PD +  +++
Sbjct: 149 DVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 191



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ H   A  LF ++ ++G+ P++ TYN +I G+CS  R  +A +L   +   ++ P+
Sbjct: 90  LCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 149

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI A  KEG++ +A  +  +ML +    + VTY+ +I G+ K      A  +++
Sbjct: 150 VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFD 209

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP++            A R  E MQL   + R G++ +    +TL
Sbjct: 210 LMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 257



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+AA  LF ++   G+ PD IT N ++ G+C   +L+EA++LFE +   ++  +++ + 
Sbjct: 266 NLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYN 325

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I   CK  ++D+A  +F  +   G + +V TY+ +I G+     +  A  ++ +M +N
Sbjct: 326 IIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDN 385

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+             AG   ++++L   M  NG   D   +  +AD
Sbjct: 386 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 434



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  +++ RGL  +  TYNT+I G+C ++ L+ A  LF+++    + P++IT  I
Sbjct: 232 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 291

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  FC+  ++++A  +F  +       + V Y+ +I G  K   +  A+D++  +  + 
Sbjct: 292 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 351

Query: 128 ISPNIA----------GRP--TEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++           G+   ++A  L+  M  NG  PD    +TL
Sbjct: 352 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 397



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 22/179 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A  +F    D    PD++T+NTII  YC   R+DE +QL  +++   L  N+ 
Sbjct: 197 KHNRFDDAKHMF----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTT 252

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE-- 121
           T+  LI  FC+   ++ A  +F +M+  G   + +T + L+ G+ +++ ++ A +++E  
Sbjct: 253 TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVI 312

Query: 122 EMCE---NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +M +   + ++ NI         +  EA  L+ S+  +G+ PD      +  YN+  SG
Sbjct: 313 QMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD------VQTYNVMISG 365



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 16/166 (9%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL L  ++ +  ++PD++ Y+ II   C      +A  LF ++    + PN  T+  +I
Sbjct: 63  SALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 122

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D FC  GR  DA  +   M+E+    +V+T++ LI    K   +  A  + +EM    I 
Sbjct: 123 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 182

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P+               R  +A  ++D M      PD +  +T+ D
Sbjct: 183 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIID 224



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  LF  L   G+EPD+ TYN +I G+C  + + +A  LF K+     +P++ 
Sbjct: 333 KGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNS 392

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+  LI    K G +D +  + S+M   G   +  T   + D
Sbjct: 393 TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 434


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD+A  +F++ML+ G   N VT++ LIDG+ K+  +  A ++Y+++
Sbjct: 208 TYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQL 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                SP++             G   +A  L D M    + PD +  +TL D
Sbjct: 268 LSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLID 319



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D GL P+ +T+ T+I G+C   R+D A++++++L      P+
Sbjct: 216 LCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  K  K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPD 380



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L+  + + G +D+   + S M   G + +V TYS LI+G  K   M  A +++ 
Sbjct: 171 VVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFN 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +N + PN              GR   AM++Y  +L  G  PD +  +TL
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTL 282



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ + L+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M   ML  G K +  TY+ +I+ + K  ++K+   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLK 405

Query: 122 EMCENNISP 130
           EM  +   P
Sbjct: 406 EMXRDGHVP 414



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++   +  V LKP++ 
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G    VVT
Sbjct: 383 TYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  L  L+E  +L   +    ++P+  
Sbjct: 148 KEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE ++DDA  +F +ML+ G   N V+++ LIDG+ K   +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQM 267

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L + M   G+ PD +  +TL D
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLID 319



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A +LF ++ D GL P+ +++ T+I G+C   R+D A+++++++    L P+
Sbjct: 216 LCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK G +  A  + ++M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 79/129 (61%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   L+   +L   +   G++PD+ TY+ +I G C  ++LD+A +LF+++    L PNS
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNS 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++FT LID  CK+GR+D A  ++ +ML +    +++TY+ LI G  K+ ++K A D+  E
Sbjct: 242 VSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINE 301

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 302 MSMKGLKPD 310



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A++++ Q+  + L PD+ITYNT+I G C    L +A  L  +++   LKP+ I
Sbjct: 253 KDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + + V Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
               + P I             G      +L   M R+G +P
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGYVPSVV 417



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +C    +  A  +F+ +T   L+P+ ++F  L++ + K G +++ 
Sbjct: 131 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + M   G + +V TYS LI+G  K   +  A ++++EM +N + PN          
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   + PD +  +TL
Sbjct: 251 HCKDGRVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 82/132 (62%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE  L  A +L+ ++  RG+ P+IITYNT++ GYC  NRL EA  + + +   +  P
Sbjct: 297 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 356

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TFT LI  +C   R+DD   +F  + ++G  AN VTYS L+ G+ +S  +K A +++
Sbjct: 357 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 416

Query: 121 EEMCENNISPNI 132
           +EM  + + P++
Sbjct: 417 QEMVSHGVLPDV 428



 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 95/173 (54%), Gaps = 12/173 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA+ LF ++  +G++  ++TYN+++ G C   + ++   L + +   ++ PN ITF +
Sbjct: 234 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 293

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D F KEG++ +A  ++ +M+ +G   N++TY+ L+DGY     +  A ++ + M  N 
Sbjct: 294 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 353

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            SP+I              R  + M+++ ++ + G++ + +  S L     QS
Sbjct: 354 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 406



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A+ L  ++ + G +PD++TYN+I+ G C       A+ L  K+    +K +
Sbjct: 158 LFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKAD 217

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ +ID+ C++G +D A  +F +M  KG K++VVTY+ L+ G  K+        + +
Sbjct: 218 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK 277

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           +M    I PN+             G+  EA +LY  M+  GI P+ +  +TL D Y +Q+
Sbjct: 278 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 337

Query: 169 SGSQ 172
             S+
Sbjct: 338 RLSE 341



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++ +R ++ D+ TY+TII   C    +D A+ LF+++    +K + +T+  L+ 
Sbjct: 202 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 261

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+ +D  ++   M+ +    NV+T++ L+D + K   ++ A ++Y+EM    ISP
Sbjct: 262 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 321

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI              R +EA  + D M+RN   PD +  ++L
Sbjct: 322 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 364



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 67/116 (57%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL++F  L    ++  I+ Y TII G C   ++++A  LF  L C  +KPN +T+T+
Sbjct: 444 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 503

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +I   CK+G + +A ++  KM E G   N  TY+ LI  + +  ++ ++  + EEM
Sbjct: 504 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEM 559



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 72/121 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++   G+ PD++TY  ++ G C   +L++A+++FE L   ++    + +T +I+
Sbjct: 412 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIE 471

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+++DA  +F  +  KG K NV+TY+ +I G  K  ++  A  +  +M E+  +P
Sbjct: 472 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAP 531

Query: 131 N 131
           N
Sbjct: 532 N 532



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D  +K+F  ++ RGL  + +TY+ ++ G+C   ++  A +LF+++    + P+ +T+ 
Sbjct: 373 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 432

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+D  C  G+++ A  +F  + +      +V Y+ +I+G  K   ++ A++++  +   
Sbjct: 433 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 492

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            + PN+             G  +EA  L   M  +G  P+    +TL   +L+
Sbjct: 493 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 545



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           QL   G+  +I T N +I  +C   +   A  +  K+  +  +P++ TF  LI     EG
Sbjct: 103 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEG 162

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP 136
           ++ +A ++  +M+E G + +VVTY+ +++G  +S +   A D+  +M E N+  ++    
Sbjct: 163 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 222

Query: 137 TEAMQLYDSMLRNG 150
           T    + DS+ R+G
Sbjct: 223 T----IIDSLCRDG 232



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A  LF  L  +G++P+++TY  +I G C    L EA  L  K+      PN  
Sbjct: 475 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 534

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+  LI A  ++G +  +  +  +M   G  A+  +   +ID
Sbjct: 535 TYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 576



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 46  AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           A +L +++    + PN+IT++ LID FCKE R+D+A  M   M+ KG     + Y  L+ 
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKGDSD--IRY--LLA 773

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
           G  + +   S  + +E +  +++S + A R +
Sbjct: 774 GLMRKKRKGSETEGWENL-PDDLSCSTASRSS 804



 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE 51
           A +L  ++  RG+ P+ ITY+++I G+C  NRLDEA Q+ +
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLD 758


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A K+F  +  RGL+PDI TY++++ GY     L E   LF+ +    ++P+
Sbjct: 313 LCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPD 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F  LI A  K+G++D+A ++FSKM  +G K N VTY+ LI+GY K   M++A  +++
Sbjct: 373 HYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQ 432

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           EM  N +SPN              GR   A + Y  ++++G
Sbjct: 433 EMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIKSG 473



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++  ++   G+ P+  TY +++ G+CS  +L EA++  EK+    ++PN
Sbjct: 243 LCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPN 302

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++  +D  CK GR  +A  +F  M+++G K ++ TYS L+ GY     +     +++
Sbjct: 303 VVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFD 362

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M ++++ P+              G+  EAM ++  M   G+ P+ +  +TL
Sbjct: 363 LMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTL 414



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    D A   + ++ DR + P+++TY++II   C    +D+A+++ +++    + PN
Sbjct: 208 LLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPN 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T L+  FC  G++ +A     KM   G + NVVTYS  +D   K+     A  ++ 
Sbjct: 268 CFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFY 327

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P+I             G   E   L+D M+++ + PD  + +TL
Sbjct: 328 SMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTL 379



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           L  E     AL+L   + D G    P++++Y+T+  G       D+A   + ++   ++ 
Sbjct: 171 LCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRIL 230

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN +T++ +I A CK   MD A  +  +M++ G   N  TY+ L+ G+  S  +  A   
Sbjct: 231 PNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKF 290

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E+MC N + PN+             GR TEA +++ SM++ G+ PD    S+L
Sbjct: 291 LEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSL 344



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 20/164 (12%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-----CVQLKPNSITFTILIDAF 72
           +T+ G  P++ ++  I+ G C  NR  EA++L   +      C+   PN ++++ + D  
Sbjct: 152 MTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCL---PNVVSYSTVTDGL 208

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G  D A   + +ML++    NVVTYS +I    K Q M  A +V++ M +N ++PN 
Sbjct: 209 LKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNC 268

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                       +G+ TEA++  + M  NG+ P+ +  S+  DY
Sbjct: 269 FTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDY 312



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 22/188 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL----FEKLTCVQLKPNS 62
            LD      G +  +G   + I +N ++ G C+  R D+A+ +      +L CV   PN 
Sbjct: 105 RLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCV---PNV 161

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + TI++   C E R  +A  +   M + G     NVV+YS + DG  K  +   A+  Y
Sbjct: 162 FSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYATY 221

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            EM +  I PN+    +            +AM+++D M++NG+ P+    ++L  +   S
Sbjct: 222 REMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLV-HGFCS 280

Query: 169 SGSQEHCI 176
           SG     I
Sbjct: 281 SGQLTEAI 288



 Score = 42.0 bits (97), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 19/171 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT---CVQLKPNSITFTI 67
           AL +F +L  RG+   I + N  +      N    AV  F ++       + P   T+ I
Sbjct: 37  ALDVFDELLRRGIGAPIRSLNGALADVARDNPA-AAVSRFNRMARAGASMVTPTVHTYGI 95

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C  GR+D        +++KG +   + ++ L+ G    +    A D V   M E 
Sbjct: 96  LIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTEL 155

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRN--GIMPDGLLLSTLAD 163
              PN+              R  EA++L   M  +  G +P+ +  ST+ D
Sbjct: 156 GCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTD 206


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+ + G  PD+ITY T+I G+C    +DEAV L + ++    KPN+I++TI
Sbjct: 344 VDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 403

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C+  R  DA  + S M+++G   N VT++ LI+   K    + A ++ ++M  N 
Sbjct: 404 VLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNG 463

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  GI P+ ++ S++A
Sbjct: 464 CSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMA 510



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H + A  +  ++   GL+P+++ YNT++ G CS  R +EA  L  ++       + +
Sbjct: 270 KDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDV 329

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FC+ G +D    +  +MLE G   +V+TY+ +I+G+ K   +  A  + + M
Sbjct: 330 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 389

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN             A R  +A +L   M++ G +P+ +  +TL ++
Sbjct: 390 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINF 442



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 22/176 (12%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---------- 57
           +D  ++L  +L   G EPDI++YN ++ G C   R D+  +L  ++  V           
Sbjct: 194 VDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHG 253

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             P+   +  +ID  CK+G  + A  + S+M   G K NVV Y+ ++ G   ++  + A 
Sbjct: 254 CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAE 313

Query: 118 DVYEEMCE-----NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           D+  EM +     ++++ NI        G     ++L + ML +G +PD +  +T+
Sbjct: 314 DLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTV 369



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A++L  Q+   G  PD+I+Y+T+I G     + +EA++L   +    + PN+I ++ +
Sbjct: 450 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSM 509

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             A  +EGR D    MF  + +   +++   Y+ +I    K      A D +  M  N  
Sbjct: 510 ASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGC 569

Query: 129 SPN 131
            PN
Sbjct: 570 MPN 572



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 58/119 (48%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL+L   + ++G+ P+ I Y+++        R D+ +Q+F+ +    ++ ++  +  +
Sbjct: 485 EEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAV 544

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           I + CK    D A   F+ M+  G   N  TY+ LI G      ++ A D+  E+C   
Sbjct: 545 ISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSRR 603



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 22/181 (12%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A++    L  +G   D    N ++   C    +DE V+L  KL     +P+ +++  ++
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220

Query: 70  DAFCKEGRMDDATMM----------FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
              C   R DD   +           S+M E G   ++  Y+ +IDG  K  + + A D+
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDI 280

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
              M    + PN+            A R  EA  L   M +     D +  + L D+  Q
Sbjct: 281 LSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQ 340

Query: 168 S 168
           +
Sbjct: 341 N 341



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   D  +++F  + D  +  D   YN +I   C     D A+  F  +      PN
Sbjct: 513 LSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 572

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK 91
             T+TILI     EG + +A  + S++  +
Sbjct: 573 ESTYTILIRGLASEGLVREAQDLLSELCSR 602



 Score = 39.3 bits (90), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++ YN +I GYC   R  +          V + PN+ T+  ++ + C  G + DA  +  
Sbjct: 76  VVAYNAMIAGYC---RAGQVAAARRLAAAVPVPPNAYTYFPIVRSLCARGLIADALTVLD 132

Query: 87  KMLEKG-----PKANVVTYSCLIDGYFKS 110
           +M  +G     P  +V+  +    G F+S
Sbjct: 133 EMPLRGCAATPPMCHVILEAACRGGGFRS 161


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T  GL P ++++NT++ GY  +  LDE  +L   +    ++P+  
Sbjct: 148 KEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T ++LI+  CKE +MDDA  +F +ML+ G   N VT++ LIDG+ K+  +  A ++Y +M
Sbjct: 208 THSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
              ++ P++             G   +   L D M   G+ PD +  +TL D N
Sbjct: 268 LSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGN 321



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ B GL P+ +T+ T+I G+C   R+D A++++ ++    L P+
Sbjct: 216 LCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +     +  +M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRK 335

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML  G+ P+
Sbjct: 336 RMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 76/129 (58%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   LD   +L   +   G++PD+ T++ +I G C  +++D+A +LF+++    L PN 
Sbjct: 182 IKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK GR+D A  ++ +ML +    +++TY+ LI G  K  ++K   D+ +E
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDE 301

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 302 MSMKGLKPD 310



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++ Q+  + L PD+ITYNT+I G C    L +   L ++++   LKP+ I
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKI 312

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG ++ A     +M+++  + +   Y+ LI G  +      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREM 372

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               + P I             G      +L   M R G  P+
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPN 415



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G    +  +N ++  +C    +  A  +F+ +T   L+P+ ++F  L++ + K G +D+ 
Sbjct: 131 GYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + S M   G + +V T+S LI+G  K   M  A ++++EM +N + PN          
Sbjct: 191 FRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDG 250

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR   AM++Y  ML   ++PD +  +TL
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTL 282



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 67/130 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L     L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T LI   C+EGR  DA  M  +ML  G K  + TY+ +I+ + K  ++ +   + +
Sbjct: 346 DXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPN 131
           EM      PN
Sbjct: 406 EMQRXGYXPN 415



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A +   ++    +  D   Y  +I G C   R  +A ++  ++  V LKP   
Sbjct: 323 KEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   N VT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++T +G+  D++TY+T+I G+C   +L EA+ L  ++    + PN  T+ IL+D
Sbjct: 218 AYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CKEG++ +A  + + ML+   K +V+TYS L+DGYF    +K A  V+  M    ++P
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTP 337

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++                 EA+ L+  M +  ++P  +  S+L D
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 74/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +     L  ++ DRG   ++ITY+++I G C    LD A+ LF K+    ++PN
Sbjct: 384 LCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPN 443

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + TFTIL+D  CK GR+ DA  +F  +L KG   NV TY+ +IDG+ K   ++ A  +  
Sbjct: 444 TFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLS 503

Query: 122 EMCENNISPN 131
           +M +N   P+
Sbjct: 504 KMEDNGCIPD 513



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A  +F  ++  G+ PD+ TY  +I G+C    +DEA+ LF+++    + P  +T++ 
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+     +  +M ++G  ANV+TYS LIDG  K+ ++  A  ++ +M +  
Sbjct: 380 LIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQG 439

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I PN              GR  +A +++  +L  G
Sbjct: 440 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL    +L  +G + + ++Y T+I G C +     A++L +K+     KPN + ++ 
Sbjct: 145 VKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYST 204

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +IDA CK   + +A  +FS+M  KG  A+VVTYS LI G+     +K A  +  EM    
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT 264

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+PN+             G+  EA  +   ML+  + PD +  STL D
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 2/124 (1%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   +  A  LF ++  +G+  D++TYNT+I G+C + +L EA+ L  K+    + PN
Sbjct: 1076 LCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPN 1135

Query: 62   SITFTILIDAFCKEGR--MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
              T+ IL+DA CKEG+  +D++  M SKM + G KAN VT+  +I   F+         +
Sbjct: 1136 VRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKL 1195

Query: 120  YEEM 123
              EM
Sbjct: 1196 LHEM 1199



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +    ++PD+ITY+T++ GY  +  + +A  +F  ++ + + P+
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPD 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILI+ FCK   +D+A  +F +M +K     +VTYS LIDG  KS  +   +D+ +
Sbjct: 339 VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLID 398

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +     N+             G    A+ L++ M   GI P+    + L D
Sbjct: 399 EMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLD 452



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL LF ++  + + P I+TY+++I G C   R+     L +++       N IT++ 
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSS 414

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G +D A  +F+KM ++G + N  T++ L+DG  K   +K A +V++++    
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
              N+             G   EA+ +   M  NG +PD +
Sbjct: 475 YHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAV 515



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 61/108 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ LF ++ D+G+ P+  T+  ++ G C   RL +A ++F+ L       N
Sbjct: 419 LCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLN 478

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
             T+ ++ID  CK+G +++A  M SKM + G   + VT+  +I   FK
Sbjct: 479 VYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFK 526



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 66/125 (52%)

Query: 8    LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            ++ AL    +L  +G + + ++Y T+I G C +     A++L  K+     KP+ + +  
Sbjct: 1012 VNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNT 1071

Query: 68   LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            +IDA CK   +  A  +F +M  KG  A+VVTY+ LI G+     +K A  +  +M    
Sbjct: 1072 IIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKT 1131

Query: 128  ISPNI 132
            I+PN+
Sbjct: 1132 INPNV 1136



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 6    CHLDAA---LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            CH+        +  ++  RG  PD IT+ T+I G C   ++++A+   +KL     + N 
Sbjct: 972  CHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQ 1031

Query: 63   ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            +++  LI+  CK G    A  +  K+  +  K +VV Y+ +ID   K Q +  A+ ++ E
Sbjct: 1032 VSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFE 1091

Query: 123  MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    IS +            I G+  EA+ L + M+   I P+    + L D
Sbjct: 1092 MNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVD 1144



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   A+ L  +L  +G++PD+IT N +I  +C + ++     +  K+      P+++T  
Sbjct: 74  HYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLN 133

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C +G++  A     K+L +G + N V+Y  LI+G  K  + ++A  + +++   
Sbjct: 134 TLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGR 193

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              PN+    T            EA  L+  M   GI  D +  STL
Sbjct: 194 LTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 240



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 67/127 (52%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            H   A+ L  +L  +G++PD+ T N +I  +C + ++     +  K+      P++ITFT
Sbjct: 941  HYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFT 1000

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             LI+  C +G+++ A     K+L +G + N V+Y  LI+G  K  + ++A  +  ++   
Sbjct: 1001 TLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGR 1060

Query: 127  NISPNIA 133
               P++ 
Sbjct: 1061 LTKPDVV 1067



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+  F ++      P II +N I+  +  +     AV L  +L    ++P+ IT  
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ILI+ FC  G++     + +K+L++G   + VT + LI G      +K A   ++++
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKL 155



 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 12/137 (8%)

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
           S+  +D+AV  F ++ C++  P  I F  ++D+F K      A  +  ++  KG + +++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLI 95

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSM 146
           T + LI+ +     +   F V  ++ +    P+            + G+  +A+  +D +
Sbjct: 96  TLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKL 155

Query: 147 LRNGIMPDGLLLSTLAD 163
           L  G   + +   TL +
Sbjct: 156 LAQGFQLNQVSYGTLIN 172



 Score = 42.7 bits (99), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F  L  +G   ++ TYN +I G+C    L+EA+ +  K+      P+
Sbjct: 454 LCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPD 513

Query: 62  SITFTILIDAFCKE 75
           ++TF I+I A  K+
Sbjct: 514 AVTFEIIIIALFKK 527


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A +L  ++   G+ PD +TY +II  +    RL +  ++F ++    L P+
Sbjct: 524 LCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPS 583

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+LI     +GR++ A + FS+M EKG   NV+TY+ LI+G  K + M  A++ + 
Sbjct: 584 VVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFA 643

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  I PN              G   EA+ LY  ML  G+ PD    S L
Sbjct: 644 EMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSAL 695



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++  +G  PD+I YN ++ G C L  L+EA +L +K+    + P+ +T+T +I 
Sbjct: 498 AFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIH 557

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  + GR+     +F +ML KG   +VVTY+ LI G+     ++ AF  + EM E  I P
Sbjct: 558 AHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILP 617

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N+              R  +A   +  M+  GI P+    + L + N      QE
Sbjct: 618 NVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQE 672



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A++++  + + G++P I+TYNT++  YC   ++ + + L  ++      PN +T+ +
Sbjct: 215 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 274

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+   K+G  + A  +  +ML+ G K +  TY+ LI GYF    +  A  + EEM    
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG 334

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            SP +A            GR ++AMQ    ML N ++PD +  +TL
Sbjct: 335 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 380



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 6   CHLDAALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C L        QL+D     L PD+++YNT+I GYC L  L +A  LF++L  + L P  
Sbjct: 350 CKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  L+D  C++G ++ A  +  +M+ +G   ++VTY+ L++G  K  ++  A + ++E
Sbjct: 410 VTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDE 469

Query: 123 MCENNI-------SPNIAGR-----PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    +       +  I G       + A  L + ML  G  PD ++ + + D
Sbjct: 470 MLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVD 522



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   + A  L G++   GL+    TYN +I GY +   L EA+ L E++      P 
Sbjct: 279 LSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPT 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   I   CK GRM DA    S ML      +VV+Y+ LI GY +  N+  AF +++
Sbjct: 339 VATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFD 398

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+    + P I             G    A QL   M+  GI PD +  + L +
Sbjct: 399 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A + F ++   GLE D   Y T I G   L     A  L E++      P+ I + +
Sbjct: 460 LSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNV 519

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D  CK G +++A+ +  KM+  G   + VTY+ +I  + ++  ++   +++ EM    
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKG 579

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++P++             GR   A   +  M   GI+P+ +  ++L +
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLIN 627



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 60/98 (61%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A   F ++ ++G+ P++ITYN++I G C + R+D+A   F ++    + PN  ++T
Sbjct: 599 RLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYT 658

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           ILI+  C  G   +A  ++ +ML++G + +  T+S L+
Sbjct: 659 ILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALL 696



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL L  ++  +G  P + TYN+ I G C L R+ +A+Q    +    L P+ +++  
Sbjct: 320 LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNT 379

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C+ G +  A ++F ++        +VTY+ L+DG  +   ++ A  +  EM    
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 439

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
           I+P+I             G  + A + +D ML  G+  D    +T
Sbjct: 440 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484



 Score = 43.1 bits (100), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 50/108 (46%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E  +   + +I  Y   + +++ + +F+K+   +L P+      ++     +  M  A  
Sbjct: 161 EVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVE 220

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           ++  M E G K  +VTY+ L+D Y K   ++   D+  EM     +PN
Sbjct: 221 VYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPN 268



 Score = 39.3 bits (90), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 40/74 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ ++G+ P+  +Y  +I   C++    EA+ L++++    ++P+
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688

Query: 62  SITFTILIDAFCKE 75
           S T + L+    K+
Sbjct: 689 SCTHSALLKQLGKD 702


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  AL  F  +T +G++PD++ YN++I G CS  R +EA  L   +    + PN
Sbjct: 158 LCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPN 217

Query: 62  SITFTILIDAFCKEGR-----------------------------------MDDATMMFS 86
             TF +L+D FCKEG+                                   M+DA  +F 
Sbjct: 218 VQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFE 277

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ KG   NVVTYS LI G+ K++N+  A  V +EM  N ++ ++            AG
Sbjct: 278 LMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAG 337

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           RP  A++L+ +M  +  +P+
Sbjct: 338 RPEAAIELFCTMHEHHQLPN 357



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 80/129 (62%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +   +   G+EPD++TYN++I G+C L+++++AV++FE +    L PN +
Sbjct: 230 KEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVV 289

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI  +CK   ++ A  +  +M+  G   +VVT+S LI G+ K+   ++A +++  M
Sbjct: 290 TYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTM 349

Query: 124 CENNISPNI 132
            E++  PN+
Sbjct: 350 HEHHQLPNL 358



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+K+F  +  +GL P+++TY+++I G+C    +++A+ + +++    L  + +T++
Sbjct: 268 QMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWS 327

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  FCK GR + A  +F  M E     N+ T + ++DG FK Q    A  ++ +M + 
Sbjct: 328 TLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKM 387

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+  NI             G+  +A +L+  +   GI  D +  +T+
Sbjct: 388 NLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTM 434



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 59/106 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ LF ++    LE +I+TYN ++ G CS  + ++A +LF  L    ++ + + +T +I 
Sbjct: 377 AISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIK 436

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             CKEG +DDA  +  KM E G   N  TY+ L+ G  +  ++  +
Sbjct: 437 GLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRS 482



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 35/163 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--------------------- 42
           K  +++ A+ +  ++ + GL  D++T++T+I G+C   R                     
Sbjct: 300 KTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQ 359

Query: 43  -----LD---------EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                LD         EA+ LF K+  + L+ N +T+ I++D  C  G+ +DA  +FS +
Sbjct: 360 TCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCL 419

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             KG + +VV Y+ +I G  K   +  A D+  +M EN   PN
Sbjct: 420 PSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPN 462



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 20  DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79
           +RG +  +I Y+TI+   C    L  A+  F  +TC  ++P+ + +  LI   C  GR +
Sbjct: 142 NRGFDL-LIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWN 200

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------ 133
           +AT +   M+ KG   NV T++ L+D + K   +  A  +   M    + P++       
Sbjct: 201 EATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVI 260

Query: 134 ------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  +  +A+++++ M+  G++P+ +  S+L
Sbjct: 261 SGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSL 294



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 16/174 (9%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL        + G +   G+EP ++T+ T+I G C+   +  A +  + L  +  + NS
Sbjct: 53  CHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNS 112

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV-VTYSCLIDGYFKSQNMKSAFDVYE 121
            T   +I+  CK G    A     K+  +    ++ + YS ++D   K   +  A + + 
Sbjct: 113 YTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFS 172

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    I P++             GR  EA  L  +M+R GIMP+    + L D
Sbjct: 173 GMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVD 226



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF  L  +G++ D++ Y T+I G C    LD+A  L  K+      PN  T+ +L+ 
Sbjct: 412 ARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVR 471

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              +   +  +T     M  KG  A+  T   LI  YF +    SA  V+
Sbjct: 472 GLLQRYDISRSTKYLMLMKGKGLSADATTTELLIS-YFSANKENSALQVF 520


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F ++ ++G+   ++TYN +I G C   +  EAV+L  K+  V L PN +T+ I
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC  G+MD A  +F+++   G    +VTY+ LI GY K +N+  A D+ +EM E  
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           I+ +                  +A +++  M ++G++PD    S L
Sbjct: 399 IARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVL 444



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++LF QL   GL P ++TYNT+I GY  +  L  A+ L +++    +  + +T+TI
Sbjct: 349 MDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTI 408

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDAF +    D A  M S M + G   +V TYS LI G   + NMK A   ++ + E +
Sbjct: 409 LIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMH 468

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + PN              G    A++L + M+ +G++P+
Sbjct: 469 LQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPN 507



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++   GL P+  TY+ ++ G+       E  Q++E +    + PN+  +  LI 
Sbjct: 212 AKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLIS 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C +G +D A  +F++M EKG    V+TY+ LI G  + +    A  +  ++ +  +SP
Sbjct: 272 EYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSP 331

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           NI             G+   A++L++ +  +G+ P      TL  YN   +G
Sbjct: 332 NIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP------TLVTYNTLIAG 377



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI+  + D A  +F  L  + +  +  ++  +I G C         +L   L    L P
Sbjct: 133 LLIRSNYFDKAWWIFNVLKSK-VVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSP 191

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + +T LID  CK G +  A  +F KM   G   N  TYS L++G+FK    +  F +Y
Sbjct: 192 NVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMY 251

Query: 121 EEMCENNISPN 131
           E M  + I PN
Sbjct: 252 ENMNRSGIVPN 262



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 64/125 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A ++   +   GL PD+ TY+ +I G C    + EA + F+ L  + L+PNS+ +  +
Sbjct: 420 DKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTM 479

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +CKEG    A  + ++M+  G   NV ++   +    + +  K A  +  +M  + +
Sbjct: 480 IHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGL 539

Query: 129 SPNIA 133
            P+++
Sbjct: 540 KPSVS 544



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL     +   G  P   T+N ++C     N  D+A  +F  L   ++  N+ +F I+
Sbjct: 106 DQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLKS-KVVLNAYSFGIM 164

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C+ G       + + + E G   NVV Y+ LIDG  K+ ++  A +++ +M    +
Sbjct: 165 ITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGL 224

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
            PN              G   E  Q+Y++M R+GI+P+ 
Sbjct: 225 VPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNA 263



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A K F  L +  L+P+ + YNT+I GYC       A++L  ++    + PN  +F  
Sbjct: 454 MKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCS 513

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
            +   C++ +  +A ++  +M+  G K +V  Y
Sbjct: 514 TMGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A   F ++   G  PDI+TY T+I G C + RLD+A+  F ++    L PN ITFT
Sbjct: 95  RLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFT 154

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F   G+ + A  +F +M+++G   NV T++ +ID  FK   +  A  +++ M   
Sbjct: 155 TLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRA 214

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN            IAG   E M+L D ML  G+ P+ + L+TL D
Sbjct: 215 GAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPNAVNLNTLLD 263



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +   G+ PD   +N  I  YC   RLDEA   F K+  +   P+ +T+T +ID  CK GR
Sbjct: 71  MVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGR 130

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           +DDA   F +M++ G   N++T++ LI G+      + A +++ EM +  I PN+     
Sbjct: 131 LDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNS 190

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   G+ TEA +L+D M R G  P+ +  +T+
Sbjct: 191 MIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTM 226



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +   G +P+  TY +++ GY +   L +   + + +    ++P+   F I I 
Sbjct: 29  AREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNVKDLMVQNGMRPDRHVFNIEIY 88

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+CK GR+D+A++ F+KM + G   ++VTY+ +IDG  K   +  A   + +M ++ +SP
Sbjct: 89  AYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSP 148

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI             G+  +A +L+  M+  GI P+    +++ D
Sbjct: 149 NIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMID 193



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN +T+++LI+  CK G   +A  +F+ M++ G K N  TY  L+ GY    N+    +V
Sbjct: 8   PNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNV 67

Query: 120 YEEMCENNISP-----NIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + M +N + P     NI        GR  EA   ++ M + G MPD +  +T+ D
Sbjct: 68  KDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVID 123



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 19/117 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A KLF  +   G +P++++YNT+I GY     + E ++L + +  + LKPN
Sbjct: 195 LFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPN 254

Query: 62  SI-------------------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           ++                   T   LID+ C++ R++D   +F +ML K  K + +T
Sbjct: 255 AVNLNTLLDGMLSIGLKPNVDTCKTLIDSCCEDDRIEDILTLFREMLSKADKTDTIT 311


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + KE  ++AA  LF ++  RGL PD +TYN++I GY  + RLD+ V  FE++  +  +P+
Sbjct: 143 MWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPD 202

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+ FCK G++      + +M + G K NVV+YS L+D + K   M+ A   Y 
Sbjct: 203 VITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYV 262

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M      PN              G  ++A +L + ML  G+  + +  + L D
Sbjct: 263 DMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALID 316



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L   L+ + ++   GL+P++++Y+T++  +C  + + +A++ +  +  V   PN  
Sbjct: 215 KSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEF 274

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+DA CK G + DA  + ++MLE G + NVVTY+ LIDG   ++ MK A  ++ +M
Sbjct: 275 TYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKM 334

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
               + PN+A                 A++L + +   GI PD LL  T 
Sbjct: 335 VTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTF 384



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 13/179 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K  ++D AL+L  +L  RG++PD++ Y T I G C L +++ A  +  ++    +K N
Sbjct: 353 FVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKAN 412

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +T L+DA+ K G   +   +  +M E   +  VVT+  LIDG  K++ +  A D + 
Sbjct: 413 TLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFG 472

Query: 122 EMCEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            M  +  + PN A             +   A  L++ M + G++PD    ++L D NL+
Sbjct: 473 RMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLK 531



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   + F  +   G +P + TYN +I        ++ A  LFE++    L P+++T+  +
Sbjct: 115 DGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSM 174

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID + K GR+DD    F +M     + +V+TY+ LI+ + KS  +    + Y EM ++ +
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGL 234

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            PN+    T            +A++ Y  M R G +P+    ++L D N
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDAN 283



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 66/118 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A KLFG++   G+ P++ +YN +I G+     +D A++L  +L    ++P+ + +  
Sbjct: 324 MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGT 383

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            I   C   +++ A ++ ++M E G KAN + Y+ L+D YFKS N      + EEM E
Sbjct: 384 FIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQE 441



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +L  ++ + G+E +++TY  +I G C   R+ EA +LF K+    + PN  ++  
Sbjct: 289 LSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNA 348

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F K   MD A  + +++  +G + +++ Y   I G    + +++A  V  EM EN 
Sbjct: 349 LIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENG 408

Query: 128 ISPNI------------AGRPTEAMQLYDSM 146
           I  N             +G PTE + L + M
Sbjct: 409 IKANTLIYTTLMDAYFKSGNPTEGLHLLEEM 439



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A + F ++    + P   + N ++  +  L + D   + F+ +     KP   T+ I
Sbjct: 79  LEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNI 138

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   KEG ++ A  +F +M  +G   + VTY+ +IDGY K   +      +EEM   +
Sbjct: 139 MIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++            +G+  + ++ Y  M ++G+ P+ +  STL D
Sbjct: 199 CEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVD 246



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 8   LDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +  A+  FG+++ D GL+P+   Y  +I G C  N++  A  LFE++    L P+   +T
Sbjct: 464 VSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYT 523

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D   K+G M +A  +  KM E G K +++ Y+ L+ G+ +   ++ A    EEM   
Sbjct: 524 SLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGE 583

Query: 127 NISPN 131
            I P+
Sbjct: 584 EILPD 588


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 5   ECHLDAALKLFGQLTD-RGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           E   + AL+L   + D +GL   PD+++YNT+I G+    ++D+A  LF ++    + P+
Sbjct: 279 ENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPD 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID  CK   +D A  +F +ML+KG K +  TY+CLI GY  +   K    + E
Sbjct: 339 VVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLE 398

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLL 157
           EM  +++ P+              GR TEA  ++DS++R GI PD ++
Sbjct: 399 EMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMI 446



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 71/122 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A +L   +   G+ PD+I+YNT++ G+C   R DEA +L + +  + LKPN
Sbjct: 533 LCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPN 592

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+  +CK  R+DDA  +  +ML  GP  +VVTY+ ++ G F++     A ++Y 
Sbjct: 593 EFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYL 652

Query: 122 EM 123
            M
Sbjct: 653 NM 654



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 56/212 (26%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  +F Q+ D+G++P   TYN +I GY S  +  E V+L E+++   L+P+   + +
Sbjct: 355 VDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYAL 414

Query: 68  LIDAFCKEGR---------------------MDDATMMFSKMLEKGPKANVVTYSCLID- 105
           L+D  CK GR                     +D+A  +F KM ++G   NVV Y  LID 
Sbjct: 415 LLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDA 474

Query: 106 ----------------------GYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
                                 G    +  + A ++  EM +  I  ++           
Sbjct: 475 LCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLC 534

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             GR  EA +L + MLR G+ PD +  +TL D
Sbjct: 535 REGRVMEAQRLIELMLRVGVRPDVISYNTLVD 566



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L  ++   G  PD++TYNTI+ G     R  EA +L+  +   + + +  
Sbjct: 605 KARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMY 664

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I+++  CK   +D+A  MF  +  KG + +++T++ +I    K    + A D++  +
Sbjct: 665 TYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATI 724

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P++             G   E   L+ +M  NG  P+  +L+ L
Sbjct: 725 SAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNAL 774



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 51/209 (24%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKPNSITF 65
            L+    +FG +   G   + I +N ++ G C   RLDEA   L  ++      PN +++
Sbjct: 210 RLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSY 269

Query: 66  TILIDAFC--------------------------------------KEGRMDDATMMFSK 87
             L+  FC                                      +EG++D A  +F +
Sbjct: 270 NTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQ 329

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGR 135
           M+++G   +VVTY+ +IDG  K+Q +  A  V+++M +  + P+              G+
Sbjct: 330 MIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGK 389

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
             E ++L + M  + + PD  + + L DY
Sbjct: 390 WKEVVRLLEEMSTHDLEPDCFIYALLLDY 418



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 35/189 (18%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------CV----- 56
           +D A+ +F ++  +GL P+++ Y  +I   C L R+D+A+  F ++       C      
Sbjct: 446 IDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWE 505

Query: 57  ------------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
                        ++ + + F  L+   C+EGR+ +A  +   ML  G + +V++Y+ L+
Sbjct: 506 KAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLV 565

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIM 152
           DG+  +     A  + + M    + PN             A R  +A  L   ML NG  
Sbjct: 566 DGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPT 625

Query: 153 PDGLLLSTL 161
           PD +  +T+
Sbjct: 626 PDVVTYNTI 634



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 61/122 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F  L  +GL+  IIT+N +I       + ++A+ LF  ++   L P+  T+ +
Sbjct: 679 VDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCL 738

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +   KEG +++  ++FS M E G   N    + L+  +    ++  A     ++ E N
Sbjct: 739 IAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKN 798

Query: 128 IS 129
            S
Sbjct: 799 FS 800



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 10/132 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIIC------GYCSLNRLDEAVQLFEKLT--CV-QLKPN 61
           ALKLF  L        +  +N ++       G  S       + LF+++   C  ++ P+
Sbjct: 135 ALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAPD 194

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-Y 120
             T++ILI  FC+ GR++    +F  +L+ G + N + ++ L+ G   ++ +  A ++  
Sbjct: 195 RCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILL 254

Query: 121 EEMCENNISPNI 132
             M E   +PN+
Sbjct: 255 WRMPEFGCTPNV 266



 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 50/121 (41%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A+ LF  ++  GL PD+ TY  I         L+E   LF  +      PN
Sbjct: 708 LLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPN 767

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S     L+  F   G +  A    SK+ EK       T S LI  Y + +  + A  + E
Sbjct: 768 SRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGEYQQLAKSLPE 827

Query: 122 E 122
           +
Sbjct: 828 K 828


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 80/127 (62%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  ++ A KL  ++ +  L PD+++YNT+I G    +++ EA +L E+++   +KPN
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T  I++  +CKEG+MDDA+   +KM E G   + VTY+ LI+GY K+ NM  AF   +
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 122 EMCENNI 128
           EM   N+
Sbjct: 443 EMGRKNM 449



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A     ++ + G  PD +TYNT+I GYC    + EA +  +++    +K +S+
Sbjct: 395 KEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSV 454

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   ++   C+E ++++A  + S   ++G   + V+Y  LI GYFK  N+  A  +++EM
Sbjct: 455 TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEM 514

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E  I P+              G+  +A+   + +L +G++PD    +T+
Sbjct: 515 KEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTI 564



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A+    +L + GL PD  TYNTI+ GYC    +++A Q   K+     KP+  T  IL
Sbjct: 540 EQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNIL 599

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C EG ++ A  +F+  + KG   + VTY+ LI    K   +  AF++  EM E  +
Sbjct: 600 LRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKEL 659

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLL 157
            P+             +GR  EA +    ML  G +PD +L
Sbjct: 660 GPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVL 700



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 12/171 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F      G+ P++ T+N +I GYC  N+  +AV+    +      P+++T+  ++D  CK
Sbjct: 196 FNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCK 255

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA- 133
           +GR+ DA  +   M  +G   N  TY+ L+ GY K   +K A +V E M +NN+ P++  
Sbjct: 256 KGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWT 315

Query: 134 -----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      GR  EA +L D M    ++PD +  +TL +  L+ S   E
Sbjct: 316 YNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISE 366



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L   +  RGL P+  TYN ++ GYC +  L EA  + E +T   L P+
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LI+  C EGR+++A  +  +M       +VV+Y+ LI+G  +   +  AF + E
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLE 372

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E  + PN              G+  +A      M  +G  PD +  +TL +
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLIN 426



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+ A KL      RG   D ++Y T+I GY     +D A++L++++   ++ P+
Sbjct: 463 LCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPS 522

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  +I   C+ G+ + A    +++LE G   +  TY+ ++ GY +  +++ AF  + 
Sbjct: 523 TVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHN 582

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M EN+  P++             G   +A++L+++ +  G   D +  +TL
Sbjct: 583 KMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTL 634



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 48/88 (54%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L+ ALKLF     +G   D +TYNT+I   C   RLD+A  L  ++   +L P+  T
Sbjct: 606 EGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYT 665

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +  +I A    GR+ +A    SKMLEKG
Sbjct: 666 YNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 23/133 (17%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-------- 53
           L KE  LD A  L  ++ ++ L PD  TYN II       R+ EA +   K+        
Sbjct: 638 LCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPD 697

Query: 54  TCVQLKPNS---------------ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
             +QL  N                + ++  I   C EG+  DA  +F +  +KG   +  
Sbjct: 698 QVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKS 757

Query: 99  TYSCLIDGYFKSQ 111
           TY  L+DG  K +
Sbjct: 758 TYINLMDGLIKRR 770



 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 15/149 (10%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R   P     +T I  Y    +   A Q+F+K+  ++L+PN +T   L+++  +      
Sbjct: 129 RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHS 188

Query: 81  ATM---MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-NIA--- 133
            +     F+  ++ G   NV T++ +I GY      K A +    M + N SP N+    
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 134 --------GRPTEAMQLYDSMLRNGIMPD 154
                   GR  +A  L   M   G++P+
Sbjct: 249 ILDTLCKKGRLGDARDLLMDMKSRGLLPN 277


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL++   + D G +PD  +Y  +ICG+C +++++ A  LF ++    L PN +T+T LI
Sbjct: 648 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 707

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D +CK+ ++D AT +   M   G + NV TY+ LI G  K  N   A ++ + M E  I 
Sbjct: 708 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 767

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           PN+             G  + A+++++ M+  G +P+ L  S+L
Sbjct: 768 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 811



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A  LF ++ D GL P+ +TY  +I GYC   +LD A  L E +     +PN  T+ +
Sbjct: 681 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 740

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K+     A  +   M+E+G   NVVTY+ +IDG  K+ +   A +++ +M E  
Sbjct: 741 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 800

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             PN+             G+  EA  L+  + R+G++PD +    + +  +  SG  EH
Sbjct: 801 CLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM-SGKVEH 858



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  C    LD+AL++F Q+   G EP+ +TY+T+I G C   R++EA  L  ++    
Sbjct: 426 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 485

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P + T T  I A C  G  +DA  +F  M  KG + NV TY+ LI G   S  +K A 
Sbjct: 486 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 545

Query: 118 DVYEEMCENNISPN 131
            ++  M  + + PN
Sbjct: 546 GLFHRMSRDGVFPN 559



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L   +   G  P++ TYN +I G    N    A +L + +    + PN +
Sbjct: 712 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV 771

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID  CK G    A  MF+KM+E+G   N++TYS LI    +   ++ A +++ E+
Sbjct: 772 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 831

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
             + + P+            ++G+   A      M++ G  P
Sbjct: 832 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 873



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 69/121 (57%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A +  + ++   G++P+++ YN +I   C    + +A  + +K+   ++ P++ T+T +I
Sbjct: 368 AVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMI 427

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C++  +D A  +F++M ++G + N VTYS LI+G   S  +  AFD+  EM  + I 
Sbjct: 428 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL 487

Query: 130 P 130
           P
Sbjct: 488 P 488



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C+ DA  +LF  + ++G EP++ TY  +I G C    L  A+ LF +++   + PN++T+
Sbjct: 505 CYEDA-WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 563

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             LI+   +  R+  A ++ + M   G   N+VTY+ +I GY    + K A  V   M +
Sbjct: 564 NALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 623

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              S N+            +G  T A+++ D M   G  PD
Sbjct: 624 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 664



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 2   LIKECHLDAAL----KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LIK CH   A+         L+  GL   +  Y+ ++     L      +  + ++    
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           ++PN + +  +I+A CK+G + DA  +  K+ E     +  TY+ +I G+ +  ++ SA 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 440

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            V+ +M +    PN             +GR  EA  L   M+ +GI+P
Sbjct: 441 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILP 488



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++   +  A  +   +   GL  +I+TYN +I GYC L    +A+ +   +       
Sbjct: 569 ILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 628

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  +I  +C  G    A  +   M + G K +  +Y+ LI G+ K   M+SAF ++
Sbjct: 629 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 688

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD----GLLLSTLADY 164
            EM ++ + PN       I G     +   A  L + M R+G  P+     +L+  L   
Sbjct: 689 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 748

Query: 165 NLQSSGSQEHC 175
           N   SG++E C
Sbjct: 749 N-NFSGAEELC 758



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 69/131 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +   A +L   + + G+ P+++TY  +I G C       A+++F K+      PN
Sbjct: 745 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 804

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI A  +EG++++A  +F+++   G   + +TY  +I+ Y  S  ++ AF+   
Sbjct: 805 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 864

Query: 122 EMCENNISPNI 132
            M +    P +
Sbjct: 865 RMIKAGCQPTL 875



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 36/180 (20%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++ ++G  P+++TY+++I       +++EA  LF +L    L P+ IT+  +I+
Sbjct: 789 ALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 848

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-----YFKSQNMKSAFDV------ 119
           A+   G+++ A     +M++ G +  + TY  LI G         Q + +  DV      
Sbjct: 849 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF 908

Query: 120 -YEEMCENNIS----------PNI--------------AGRPTEAMQLYDSMLRNGIMPD 154
            Y+   ++ +S          P +              AGR  EA +L  SM+  G+ PD
Sbjct: 909 GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 968



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 11   ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            A +L G +  +GL PD   YN+++C    +  +D A+ +F+ ++    + +   +  LI 
Sbjct: 953  ANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELIC 1012

Query: 71   AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            A C+  R  +A + F  ML +    + V  + LIDG  +        D Y+++C
Sbjct: 1013 ALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR--------DGYKDLC 1058



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L++  ++D A+ +F  ++ +G E  +  Y  +IC  C L+R  EA   FE +      P+
Sbjct: 979  LLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPD 1038

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLE 90
             +   +LID   ++G   D  M F  ++E
Sbjct: 1039 DVVQAVLIDGLLRDG-YKDLCMEFLHIME 1066


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LI G+ K+  +  A ++Y+ M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD    +TL D
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLID 325



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++ +    L P+
Sbjct: 222 LCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K +  TY+ LIDG  K  ++ +AF   +
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 342 RMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++++  +  + L PD+ITYNT+I G C    L +A  L ++++   LKP+  
Sbjct: 259 KNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKF 318

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG +D A     +M++   + + V Y+ LI G  +      A  +  EM
Sbjct: 319 TYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
               + P+I             G   +  +L   M RNG +P      ++  YN+  +G
Sbjct: 379 LSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVP------SVVTYNVLMNG 431



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K ++ TY+ +I+ + K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  N   P++ 
Sbjct: 412 EMQRNGHVPSVV 423



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 237 EMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLI-YGLCKK 295

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 296 GDLKQAH 302


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A KLF ++   GL PD+ITY+T+I G C    + +A+ L+EK+   ++ PN
Sbjct: 431 LCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPN 490

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+    ++   C++G++  A M F  ++      +++ Y+ +IDGY K  N + A  +Y+
Sbjct: 491 SLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYK 550

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ E  ISP I              + ++A +L D++  +G+ P+ +  +TL +
Sbjct: 551 QLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMN 604



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 98/178 (55%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +  ++  +G  P+++TY  +ICG+C +  ++EA++L++++     + + I+ T+
Sbjct: 367 INGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTV 426

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ + CK  ++D A  +F +M   G + +++TYS LI G  K   ++ A  +YE+MC N 
Sbjct: 427 LLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNR 486

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           I PN              G+ ++A   +D ++ + +  D +L + + D  ++   ++E
Sbjct: 487 IIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTRE 544



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 92/173 (53%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK  +   A+KL+ QL ++G+ P I+T+N+++ G+C   +L +A +L + +    L+PN+
Sbjct: 537 IKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNA 596

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+T L++ +C+EG M     + S+M  K      +TY+ +I G  K   ++ +  + E+
Sbjct: 597 VTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLED 656

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ++P+     T            +A QLYD ML + + P  +  + L +
Sbjct: 657 MDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILIN 709



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A   F  +   GL PD  +YN +I G C    + EA+ L   +    L+P+ +T+ I
Sbjct: 297 VDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNI 356

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L   F   G ++ A  +  KML KGP  N+VTY+ LI G+ +  N++ A  +Y+EM  + 
Sbjct: 357 LAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHG 416

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              +I                  A +L+  M  NG+ PD +  STL
Sbjct: 417 FQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTL 462



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  + +L   +   GL PD ++YNTII  +C    + +A QL++K+    L+P 
Sbjct: 641 LCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPT 700

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T+ ILI+ FC  G + DA  +   +  +    N   Y+ +I  +    ++  A   + 
Sbjct: 701 SVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFR 760

Query: 122 EMCENNISPNIA------GR------PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M E     +I       GR       TEA   +  ML +G+ PD  L   L +
Sbjct: 761 QMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLN 814



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 62/113 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++ + L+L  ++  + + P  ITY  +I G C   +L E+ QL E +  V L P+ +
Sbjct: 608 EEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQV 667

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           ++  +I AFCK   M  A  ++ KML    +   VTY+ LI+G+    ++K A
Sbjct: 668 SYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDA 720



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 16/176 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++     A+  F     +  +P ++++NTI+  YC L  +D A   F  +    L P+
Sbjct: 256 LCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPD 315

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + ++ ILI   C  G M +A  + + M   G + ++VTY+ L  G+     +  A+++ +
Sbjct: 316 AYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQ 375

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNG----IMPDGLLLSTL 161
           +M     +PN+             G   EA++LY  M+ +G    I+   +LL +L
Sbjct: 376 KMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSL 431



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  L    L  DII YN +I GY       EAV+L+++L    + P  +TF  L+  FC 
Sbjct: 514 FDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCI 573

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--- 131
             ++  A  +   +   G + N VTY+ L++ Y +  NM+S  ++  EM    I P    
Sbjct: 574 NRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHIT 633

Query: 132 ----IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               I G     +  E+ QL + M   G+ PD +  +T+
Sbjct: 634 YTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTI 672



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 61/127 (48%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H +    ++ ++   G      T + ++ G C  +R  +AV  F+     + +P+ ++F 
Sbjct: 226 HSNIMWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFN 285

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++  +CK G +D A   F  ML+ G   +  +Y+ LI G   + +M  A D+  +M  +
Sbjct: 286 TIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENH 345

Query: 127 NISPNIA 133
            + P++ 
Sbjct: 346 GLEPDMV 352



 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 55/119 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  L   L +R +  +   Y TII  +C+   +D+AV  F ++     + +   ++ 
Sbjct: 717 LKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSA 776

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +I   CK   + +A   F  ML  G   +   +  L++ + +  ++ S F++  EM ++
Sbjct: 777 VIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMIKS 835


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+ Q+  + + PD++T++ +I G+C + +L+EA  LF ++    + P+  TF IL+D
Sbjct: 227 AYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVD 286

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CKEG +  A  M   M+++G   NVVTYS L+DGY     +  A  V   + +   +P
Sbjct: 287 ALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAP 346

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N     T            EA+ L++ M   GI PD +  ++L D
Sbjct: 347 NAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLID 391



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D A+ L  ++ D+G++PD+ T+N +I G C + RL  A  +F+ L       N
Sbjct: 428 LCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVN 487

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ I+++  CKEG  D+A  + SKM + G   + VTY  LI   F     + A  +  
Sbjct: 488 AWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLR 547

Query: 122 EMCENNISPNIAG 134
           EM   ++   + G
Sbjct: 548 EMIARDVVYALEG 560



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL LF  +  +G+ PD +TYN++I G C   R+  A +L +++       N  T+  
Sbjct: 364 VDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNC 423

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CK   +D A  +  K+ ++G + ++ T++ LI G  K   +K+A DV++++    
Sbjct: 424 LIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKG 483

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            S N              G   EA  L   M  NGI+PD +   TL
Sbjct: 484 YSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETL 529



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 15/173 (8%)

Query: 6   CHL---DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH+   + A  +  ++   G EPD IT+NT+I G C   ++ EA+   + +  +    + 
Sbjct: 114 CHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQ 173

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            ++  LI+  CK G    A  M  K+  K  K NVV Y+ +ID   K + +  A+++Y +
Sbjct: 174 FSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQ 233

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+            I G+  EA  L+  M+   I PD    + L D
Sbjct: 234 MIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVD 286



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 21/178 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  +   ++  G  P+  +Y T+I G+C +  +DEA+ LF  +    + P+ +T+ 
Sbjct: 328 QVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYN 387

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK GR+  A  +  +M + G  AN+ TY+CLID   K+ ++  A  + +++ + 
Sbjct: 388 SLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQ 447

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNG---------IMPDGLLLSTLAD 163
            I P++             GR   A  ++  +L  G         IM +GL    L D
Sbjct: 448 GIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFD 505



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE +L  A  +   +   G+ P+++TY++++ GYC +N++++A  +   ++ +   PN
Sbjct: 288 LCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPN 347

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + ++  +I+ FCK   +D+A  +F+ M  KG   + VTY+ LIDG  KS  +  A+++ +
Sbjct: 348 AHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVD 407

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM +N    NI                 +A+ L   +   GI PD
Sbjct: 408 EMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPD 452



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 25/158 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN--RLDEAVQLFEKLTCVQLKPNSITF 65
           +D  +  F  L        II +N I+      N      A+ L  +L    + P+  TF
Sbjct: 47  VDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTF 106

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            ILI+ +C    M+ A  M +K+L+ G + + +T++ LI G                +C 
Sbjct: 107 NILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKG----------------LCL 150

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N       G+  EA+  +D +L  G   D     TL +
Sbjct: 151 N-------GKVKEALHFHDHVLALGFHLDQFSYGTLIN 181


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  A K+F ++T R L P ++++NT+I GYC +  LD   +L   +   + +P+  
Sbjct: 252 KEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVF 311

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI+A CKE +MD A  +F +M E+G   N V ++ LI G+ ++  +    + Y++M
Sbjct: 312 TYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKM 371

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P+I             G    A  + D M+R G+ PD +  +TL D
Sbjct: 372 LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLID 423



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L AA  +   +  RGL PD +TY T+I G+C    +D A+++ +++    ++ + +
Sbjct: 392 KNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRV 451

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F+ LI   CKEGR+ DA     +ML  G K + VTY+ ++D + K  + ++ F + +EM
Sbjct: 452 GFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEM 511

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             +   PN+             G+   A  L D+ML  G++PD +  +TL + + + + +
Sbjct: 512 QSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANA 571

Query: 172 QEH 174
            +H
Sbjct: 572 SKH 574



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ +RGL P+ + + T+I G+    ++D   + ++K+    L+P+
Sbjct: 320 LCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPD 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L++ FCK G +  A  +   M+ +G + + VTY+ LIDG+ +  ++ +A ++ +
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRK 439

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +N I  +              GR  +A +    MLR G+ PD +  + + D
Sbjct: 440 EMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMD 493



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            + ++ D G   ++  +N ++  +C    + +A ++F+++T   L+P  ++F  LI+ +C
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYC 286

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
           K G +D    +   M +   + +V TYS LI+   K   M  A  ++ EMCE  + PN  
Sbjct: 287 KVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDV 346

Query: 132 -----IAGRPTEAM-----QLYDSMLRNGIMPDGLLLSTLAD 163
                I G           + Y  ML  G+ PD +L +TL +
Sbjct: 347 IFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVN 388



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 3/140 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A +   ++   G++PD +TY  ++  +C         +L +++      PN +
Sbjct: 462 KEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVV 521

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L++  CK G+M +A M+   ML  G   + +TY+ L++G+ +  N   A   Y++ 
Sbjct: 522 TYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHAN---ASKHYKQK 578

Query: 124 CENNISPNIAGRPTEAMQLY 143
            E  I  ++A   +   +LY
Sbjct: 579 PEIGIVADLASYKSLVNELY 598


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL++   + D G +PD  +Y  +ICG+C +++++ A  LF ++    L PN +T+T LI
Sbjct: 478 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D +CK+ ++D AT +   M   G + NV TY+ LI G  K  N   A ++ + M E  I 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           PN+             G  + A+++++ M+  G +P+ L  S+L
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641



 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A  LF ++ D GL P+ +TY  +I GYC   +LD A  L E +     +PN  T+ +
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K+     A  +   M+E+G   NVVTY+ +IDG  K+ +   A +++ +M E  
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             PN+             G+  EA  L+  + R+G++PD +    + +  +  SG  EH
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM-SGKVEH 688



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  C    LD+AL++F Q+   G EP+ +TY+T+I G C   R++EA  L  ++    
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P + T T  I A C  G  +DA  +F  M  KG + NV TY+ LI G   S  +K A 
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 375

Query: 118 DVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
            ++  M  + + PN               R   A  + + M RNG  P+
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L   +   G  P++ TYN +I G    N    A +L + +    + PN +
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV 601

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID  CK G    A  MF+KM+E+G   N++TYS LI    +   ++ A +++ E+
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
             + + P+            ++G+   A      M++ G  P
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 69/121 (57%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A +  + ++   G++P+++ YN +I   C    + +A  + +K+   ++ P++ T+T +I
Sbjct: 198 AVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMI 257

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C++  +D A  +F++M ++G + N VTYS LI+G   S  +  AFD+  EM  + I 
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL 317

Query: 130 P 130
           P
Sbjct: 318 P 318



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C+ DA  +LF  + ++G EP++ TY  +I G C    L  A+ LF +++   + PN++T+
Sbjct: 335 CYEDA-WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             LI+   +  R+  A ++ + M   G   N+VTY+ +I GY    + K A  V   M +
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              S N+            +G  T A+++ D M   G  PD
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 2   LIKECHLDAAL----KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LIK CH   A+         L+  GL   +  Y+ ++     L      +  + ++    
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           ++PN + +  +I+A CK+G + DA  +  K+ E     +  TY+ +I G+ +  ++ SA 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            V+ +M +    PN             +GR  EA  L   M+ +GI+P
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILP 318



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++   +  A  +   +   G  P+I+TYN +I GYC L    +A+ +   +       
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  +I  +C  G    A  +   M + G K +  +Y+ LI G+ K   M+SAF ++
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD----GLLLSTLADY 164
            EM ++ + PN       I G     +   A  L + M R+G  P+     +L+  L   
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 165 NLQSSGSQEHC 175
           N   SG++E C
Sbjct: 579 N-NFSGAEELC 588



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 69/131 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +   A +L   + + G+ P+++TY  +I G C       A+++F K+      PN
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI A  +EG++++A  +F+++   G   + +TY  +I+ Y  S  ++ AF+   
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 122 EMCENNISPNI 132
            M +    P +
Sbjct: 695 RMIKAGCQPTL 705



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 36/180 (20%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++ ++G  P+++TY+++I       +++EA  LF +L    L P+ IT+  +I+
Sbjct: 619 ALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-----YFKSQNMKSAFDV------ 119
           A+   G+++ A     +M++ G +  + TY  LI G         Q + +  DV      
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF 738

Query: 120 -YEEMCENNIS----------PNI--------------AGRPTEAMQLYDSMLRNGIMPD 154
            Y+   ++ +S          P +              AGR  EA +L  SM+  G+ PD
Sbjct: 739 GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L G +  +GL PD   YN+++C    +  +D A+ +F+ ++    + +   +  LI 
Sbjct: 783 ANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELIC 842

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           A C+  R  +A + F  ML +    + V  + LIDG  +        D Y+++C
Sbjct: 843 ALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR--------DGYKDLC 888



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  ++D A+ +F  ++ +G E  +  Y  +IC  C L+R  EA   FE +      P+
Sbjct: 809 LLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPD 868

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLE 90
            +   +LID   ++G   D  M F  ++E
Sbjct: 869 DVVQAVLIDGLLRDG-YKDLCMEFLHIME 896


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 80/127 (62%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  ++ A KL  ++ +  L PD+++YNT+I G    +++ EA +L E+++   +KPN
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T  I++  +CKEG+MDDA+   +KM E G   + VTY+ LI+GY K+ NM  AF   +
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMD 442

Query: 122 EMCENNI 128
           EM   N+
Sbjct: 443 EMGRKNM 449



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A     ++ + G  PD +TYNT+I GYC    + EA +  +++    +K +S+
Sbjct: 395 KEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSV 454

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   ++   C+E ++++A  + S   ++G   + V+Y  LI GYFK  N+  A  +++EM
Sbjct: 455 TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEM 514

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E  I P+              G+  +A+   + +L +G++PD    +T+
Sbjct: 515 KEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTI 564



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 12/171 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F      G+ P++ T+N +I GYC  N+  +AV+    +      P+++T+  ++DA CK
Sbjct: 196 FNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCK 255

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA- 133
           +GR+ DA  +   M  +G   N  TY+ L+ GY K   +K A +V E M +NN+ P++  
Sbjct: 256 KGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWT 315

Query: 134 -----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      GR  EA +L D M    ++PD +  +TL +  L+ S   E
Sbjct: 316 YNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISE 366



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A+    +L + GL PD  TYNTI+ GYC    +++A Q   K+     KP+  T  IL
Sbjct: 540 EQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNIL 599

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C EG ++ A  +F+  + KG   + VTY+ LI    K   +  AF++  EM E  +
Sbjct: 600 LRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKEL 659

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLL 157
            P+             +GR  EA +    ML  G +P  +L
Sbjct: 660 GPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVL 700



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L   +  RGL P+  TYN ++ GYC +  L EA  + E +T   L P+
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LI+  C EGR+++A  +  +M       +VV+Y+ LI+G  +   +  AF + E
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLE 372

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E  + PN              G+  +A      M  +G  PD +  +TL +
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLIN 426



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+ A KL      RG   D ++Y T+I GY     +D A++L++++   ++ P+
Sbjct: 463 LCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPS 522

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  +I   C+ G+ + A    +++LE G   +  TY+ ++ GY +  +++ AF  + 
Sbjct: 523 TVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHN 582

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M EN+  P++             G   +A++L+++ +  G   D +  +TL
Sbjct: 583 KMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTL 634



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 48/88 (54%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L+ ALKLF     +G   D +TYNT+I   C   RLD+A  L  ++   +L P+  T
Sbjct: 606 EGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYT 665

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +  +I A    GR+ +A    SKMLEKG
Sbjct: 666 YNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A +   ++ +   +PD+ T N ++ G C    L++A++LF          +++
Sbjct: 570 REGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTV 629

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI + CKEGR+DDA  + S+M EK    +  TY+ +I     S  ++ A +   +M
Sbjct: 630 TYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689

Query: 124 CENNISP 130
            E    P
Sbjct: 690 LEKGXLP 696



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 23/133 (17%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-------- 53
           L KE  LD A  L  ++ ++ L PD  TYN II       R+ EA +   K+        
Sbjct: 638 LCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPX 697

Query: 54  TCVQLKPNS---------------ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
             +QL  N                + ++  I   C EG+  DA  +F +  +KG   +  
Sbjct: 698 QVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKS 757

Query: 99  TYSCLIDGYFKSQ 111
           TY  L+DG  K +
Sbjct: 758 TYINLMDGLIKRR 770



 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 15/149 (10%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R   P     +T I  Y    +   A Q+F+K+  ++L+PN +T   L+++  +      
Sbjct: 129 RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHS 188

Query: 81  ATM---MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-NIA--- 133
            +     F+  ++ G   NV T++ +I GY      K A +    M + N SP N+    
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 134 --------GRPTEAMQLYDSMLRNGIMPD 154
                   GR  +A  L   M   G++P+
Sbjct: 249 ILDALCKKGRLGDARDLLMDMKSRGLLPN 277


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 81/124 (65%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++P++ITYNT+I GYC   ++DEA++L   +  V LKPN++
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y  +
Sbjct: 548 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 124 CENN 127
            E+ 
Sbjct: 608 TESG 611



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 78/124 (62%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++ DRG+  + I +N+II  +C   R+ E+ +LFE +  + +KPN IT+  L
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ +C  G+MD+A  + S M+  G K N VTYS LI+GY K   M+ A  +++EM  + +
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 577

Query: 129 SPNI 132
           SP+I
Sbjct: 578 SPDI 581



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE   D A   + ++ DRG+ PD++TYN+II   C    +D+A+++   +    + P+
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++  +C  G+  +A     KM   G + +VVTYS L+D   K+     A  +++
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFD 325

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P I             G   E   L D M+RNGI PD  + S L
Sbjct: 326 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A+  F Q+ D GL P  I YN++I G C+ N+ + A +L  ++    +  
Sbjct: 415 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+I F  +ID+ CKEGR+ ++  +F  M+  G K NV+TY+ LI+GY  +  M  A  + 
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             M    + PN               R  +A+ L+  M  +G+ PD
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ PD +TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPD 300

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+++L+D  CK GR  +A  +F  M ++G K  + TY  L+ GY     +     + +
Sbjct: 301 VVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 360

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            M  N I P+              G+  +AM ++  M + G+ P+ +
Sbjct: 361 LMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAV 407



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 15/171 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+ G  P++ +YN ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I+ F KEG  D A   + +ML++G   +VVTY+ +I    K+Q M  A +V   M +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK 259

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           N + P+             +G+P EA+     M  +G+ PD +  S L DY
Sbjct: 260 NGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310



 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 70/121 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + P+   F+ILI 
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+  +G++D A ++FSKM ++G   N VTY  +I    KS  ++ A   +E+M +  +SP
Sbjct: 380 AYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439

Query: 131 N 131
            
Sbjct: 440 G 440



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD   ++ +IC Y +  ++D+A+ +F K+    L PN++T+  +I   CK GR++DA
Sbjct: 366 GIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
            + F +M+++G     + Y+ LI G       + A ++  EM +  I  N          
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR  E+ +L++ M+R G+ P+ +  +TL
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 88/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KL   +   GL+P+ +TY+T+I GYC ++R+++A+ LF+++    + P+ IT+ I
Sbjct: 527 MDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 586

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    +  R   A  ++ ++ E G +  + TY+ ++ G  K++    A  +++ +C  +
Sbjct: 587 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 646

Query: 128 I-----SPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           +     + NI        GR  EA  L+ +   NG++P+
Sbjct: 647 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ +F ++  +GL P+ +TY  +I   C   R+++A+  FE++    L P +I +  
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C   + + A  +  +ML++G   N + ++ +ID + K   +  +  ++E M    
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN+            AG+  EAM+L   M+  G+ P+ +  STL
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 15/166 (9%)

Query: 11  ALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           AL+L   + D    G  PD+++Y T+I G+      D+A   + ++    + P+ +T+  
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I A CK   MD A  + + M++ G   + +TY+ ++ GY  S   K A    ++M  + 
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++             GR  EA +++DSM + G+ P+     TL
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL LF ++   G+ PDIITYN I+ G     R   A +L+ ++T    +    
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 617

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I++   CK    DDA  MF  +     K    T++ +ID   K      A D++   
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             N + PN              G   E  QL+ SM  NG   D  +L+ +    LQ
Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQ 733



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 54/199 (27%)

Query: 10  AALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLD----------------EAVQ-- 48
           AA+  + ++   G   + PD+ TY  +I   C   RLD                +A+   
Sbjct: 67  AAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFT 126

Query: 49  ------------------LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
                             +  ++T +   PN  ++ IL+   C E R  +A  +   M +
Sbjct: 127 PLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 91  K---GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
               G   +VV+Y+ +I+G+FK  +   A+  Y EM +  I P++            A  
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQA 246

Query: 136 PTEAMQLYDSMLRNGIMPD 154
             +AM++ ++M++NG+MPD
Sbjct: 247 MDKAMEVLNTMVKNGVMPD 265


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L +FG+L   GL PD+ +YN +I G+     +D+A  LF K+    + PN +T++ L
Sbjct: 206 DLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSL 265

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK   MD A  +  +M+  G + N +TY+CLI GY  S   K +  V++EM  + +
Sbjct: 266 INGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLL 325

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            P++             GR  EA  ++DSM+  G  PD
Sbjct: 326 VPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD 363



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF  +   G+ PD   +NT+I  Y  L  +D+++ +FE +T   + P+ ITF+ +I AFC
Sbjct: 386 LFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFC 445

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--- 130
           + GR+DDA   F+ M++ G   +   YSCLI G    +++  A ++  +M    I P   
Sbjct: 446 RLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCI 505

Query: 131 --------NI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   N+   GR  E   + D ++  G  P+ +  ++L D
Sbjct: 506 KFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVD 548



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 75/131 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +     +   +   G  P++IT+N+++ GYC +  + EAV L + +  V ++P+
Sbjct: 515 LCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPD 574

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+D +CK GR+DDA  +F  ML K      V+Y+ ++ G F+++    A +++ 
Sbjct: 575 IYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFH 634

Query: 122 EMCENNISPNI 132
           EM E+ ++ +I
Sbjct: 635 EMIESGMAVSI 645



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I TYN +I  Y    R D  + +F +L    L P+  ++  LID F KEG +D A  +
Sbjct: 187 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 246

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------I 132
           F KM E+G   NVVTYS LI+G  K++ M  A  V  +M    + PN             
Sbjct: 247 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 306

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
           +G   E+++++  M  + ++PD
Sbjct: 307 SGMWKESVRVFKEMSSSLLVPD 328



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D +L +F  +T +G+ PDIIT++T+I  +C L RLD+A++ F  +    + P++  ++ 
Sbjct: 415 MDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSC 474

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           LI   C    +  A  + S ML KG P   +  ++ +I+   K   +    DV + +   
Sbjct: 475 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 534

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN+             G   EA+ L DSM   G+ PD    +TL D
Sbjct: 535 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVD 583



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++  Q+   G+ P+ +TYN +I GY +     E+V++F++++   L P+
Sbjct: 269 LCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPD 328

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                  + A CK GR+ +A  +F  M+ KGPK +V++Y  L+ GY  +  +    +++ 
Sbjct: 329 VGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFN 388

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    + P+              G   +++ +++ M + G+ PD +  ST+
Sbjct: 389 VMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 440



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A+ L   +   G+EPDI TYNT++ GYC   R+D+A+ LF  +   ++   S+++ 
Sbjct: 555 NMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYN 614

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++    +  R   A  MF +M+E G   ++ TY+ ++ G  ++     A  + E++   
Sbjct: 615 IILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSM 674

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           N+  +I             GR  EA +L+ ++   G++P
Sbjct: 675 NVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVP 713



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 67/121 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F ++ + G+   I TY T++ G C  N  DEA  L EKL  + +K + +TF I+I 
Sbjct: 629 AKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIR 688

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K GR  +A  +F+ +   G    ++TY  +I    K ++ + A +++  M +++ +P
Sbjct: 689 AMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTP 748

Query: 131 N 131
           +
Sbjct: 749 D 749



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNT-IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           L  A +L   +  +G+ P  I + T II   C   R+ E   + + +     +PN ITF 
Sbjct: 485 LVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFN 544

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE- 125
            L+D +C  G M +A  +   M   G + ++ TY+ L+DGY K   +  A  ++ +M   
Sbjct: 545 SLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHK 604

Query: 126 ----NNISPNI-------AGRPTEAMQLYDSMLRNGI 151
                ++S NI       A R   A +++  M+ +G+
Sbjct: 605 RVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGM 641



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 46  AVQLFEKL---TCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           AV+LF+++    C +  P   T+ ILI+ + +  R D    +F ++L  G   +V +Y+ 
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 229

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           LIDG+ K   +  A D++ +M E  I PN+
Sbjct: 230 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNV 259



 Score = 38.5 bits (88), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF  ++  GL P I+TY  +I         ++A  LF  +      P+S     +I 
Sbjct: 699 AKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIR 758

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
               +G +  A    SK+ +KG      T S LI  Y  S N K
Sbjct: 759 MLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLI--YLFSVNGK 800


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++   +   G++ D+ TYNT+ CG C +NR+++A +L   +T   ++ N +++T 
Sbjct: 324 VDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTT 383

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF---------- 117
           LI    KEG M +A  +F  M  KG + +VVTY+ +IDGY KS +++ A           
Sbjct: 384 LISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKG 443

Query: 118 ---DVY----------------------EEMCENNISPNIA------------GRPTEAM 140
              DVY                      EEM +    PN+             GR  EA 
Sbjct: 444 LVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAF 503

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           Q YD+ML  G+ PD  L S L
Sbjct: 504 QFYDNMLAAGLTPDDTLYSML 524



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F +    G+EP+  TY  +I G+C + +++ A  L   +    +  N I F  +ID
Sbjct: 257 ASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMID 316

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ G +D A  + + M   G + +V TY+ L  G  +   M+ A  +   M EN +  
Sbjct: 317 GYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVES 376

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N     T            EA +L+  M   G  P  +  + + D  ++S   +E
Sbjct: 377 NYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIRE 431



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 55/102 (53%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   +  A +   ++  +GL PD+ TY  ++ G+C   ++D A++LFE++     KPN 
Sbjct: 424 IKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNV 483

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           + +T LI    KEGR ++A   +  ML  G   +   YS L+
Sbjct: 484 VAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLV 525



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++  + +  D+  Y+ +I  YC    +  A ++F++     ++PN  T+  LI+ FC
Sbjct: 225 VFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFC 284

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G+++ A M+ + M  +G   N + ++ +IDGY +   +  A ++   M    I  ++ 
Sbjct: 285 KIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVY 344

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        R  +A +L   M  NG+  + +  +TL
Sbjct: 345 TYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTL 384



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 62/128 (48%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +L  ++   G++ +   YN ++  Y          ++ +++    ++P   
Sbjct: 145 KAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVG 204

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TIL+D     G +     +F ++  K    +V  YS +I+ Y ++ N++ A +V++E 
Sbjct: 205 TYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDEC 264

Query: 124 CENNISPN 131
             N I PN
Sbjct: 265 VGNGIEPN 272



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++ ++++D FCK GRMDDA  +  +M   G K N   Y+ L+D Y + +N     +V +E
Sbjct: 134 LSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKE 193

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           M    + P +            AG  ++   ++D + R  +  D
Sbjct: 194 MESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGD 237



 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ++ + ++ G+C   R+D+A +L +++    +K N+  +  L+D + ++        +  +
Sbjct: 134 LSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKE 193

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M   G +  V TY+ L+DG   + ++     V++E+   N++ ++            AG 
Sbjct: 194 MESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGN 253

Query: 136 PTEAMQLYDSMLRNGIMPD 154
              A +++D  + NGI P+
Sbjct: 254 VRRASEVFDECVGNGIEPN 272



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+LF ++  RG +P+++ Y  +I G     R +EA Q ++ +    L P+   +++
Sbjct: 464 VDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSM 523

Query: 68  LIDAFCKEGRMDD 80
           L+ +   + R D+
Sbjct: 524 LVGSLHTDKRKDE 536



 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++  ++   G+EP + TY  ++ G  +   + +   +F+++    +  +   ++ +I+A+
Sbjct: 189 EVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAY 248

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C+ G +  A+ +F + +  G + N  TY  LI+G+ K   +++A  +  +M    +  N 
Sbjct: 249 CRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQ 308

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
                        G   +A+++   M R GI  D    +TLA
Sbjct: 309 IIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLA 350


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 81/134 (60%), Gaps = 2/134 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--VQLK 59
           L KE  +D AL +   +  +G +PD++TY+T++ G C + ++DEAV L   L      +K
Sbjct: 349 LCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIK 408

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+   F ++I   CK+ R+  A  ++  M+E+G  +N+VTY+ LIDGY  +  +  A ++
Sbjct: 409 PDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALEL 468

Query: 120 YEEMCENNISPNIA 133
           +++  ++ ISPN A
Sbjct: 469 WKDAVDSGISPNAA 482



 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ LF  +    L PD ++YNT+I G C   RL EA +LF+++   + KPNS+TF+ LID
Sbjct: 148 AMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALID 207

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK G +++   +  +M + G + +V  YS LI G+    +++   +++ EM   N++P
Sbjct: 208 GFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTP 267

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+              +  EA Q+ D+M    + PD +  + LAD
Sbjct: 268 NVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLAD 312



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 70/130 (53%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   +LF ++  + + P+++TY+ ++   C   +  EA Q+ + +T  +++P+ + +T+
Sbjct: 250 IERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTV 309

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L D   K GR  DA  +   M+++G + N VTY+ +I+G  K   +  A  + E M +  
Sbjct: 310 LADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKG 369

Query: 128 ISPNIAGRPT 137
             P++    T
Sbjct: 370 KKPDVVTYST 379



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 73/132 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A +++  + +RG   +I+TYN +I GY S  +L +A++L++      + PN
Sbjct: 421 LCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPN 480

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T+LI+  CK   +  A  +F+K    G +  V  Y+ L+    +  +++ A ++++
Sbjct: 481 AATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQ 540

Query: 122 EMCENNISPNIA 133
           EM   N  P++ 
Sbjct: 541 EMRNANHDPDVV 552



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 49/209 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A ++   +T   + PD++ Y  +  G     R  +A+++ + +     +PN
Sbjct: 279 LCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPN 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG--------------- 106
           ++T+  +I+  CKEGR+DDA  +   M +KG K +VVTYS L+ G               
Sbjct: 339 NVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLN 398

Query: 107 ----------------------YFKSQNMKSAFDVYEEMCENNISPNI------------ 132
                                   K + ++ A  VY  M E     NI            
Sbjct: 399 LLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLS 458

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           AG+ T+A++L+   + +GI P+    + L
Sbjct: 459 AGKLTKALELWKDAVDSGISPNAATYTVL 487



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  + G +  RG   ++  +N ++ G+C      +A+ LF  +    L P+ +++  +I+
Sbjct: 113 AFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVIN 172

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK  R+ +A  +F +M     K N VT+S LIDG+ K+ +++  F + EEM +  +  
Sbjct: 173 GLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEG 232

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G      +L++ MLR  + P+ +  S L
Sbjct: 233 DVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCL 275



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 71/127 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++ A  LF ++ +   +PD++++N II G      ++ A +L  ++  + L P+
Sbjct: 526 LCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPD 585

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITF+ILI+ F K G++D+A  ++ +M+  G   + V +  L+ GY      +    + +
Sbjct: 586 NITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQ 645

Query: 122 EMCENNI 128
           +M + ++
Sbjct: 646 QMADKDV 652



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  LF +    G  P +  YNT++   C  + +++A  LF+++      P+ ++F I
Sbjct: 497 LSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNI 556

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   K G ++ A  +  +ML      + +T+S LI+ + K   +  A  +YE M    
Sbjct: 557 IIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCG 616

Query: 128 ISPNIAGRPTEAMQLYDSMLR 148
             P+          L+DS+L+
Sbjct: 617 HVPDAV--------LFDSLLK 629


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 19/159 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++T +G+  D++TYNT+I G+C + +L EA+ L   +    + P+  T+TIL+D
Sbjct: 217 AYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVD 276

Query: 71  AFCKEGRMDDATMMFS-------KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           A CKEG++ +A    S       +M ++G  A+V+TYS LIDG  K+ ++  A  ++ +M
Sbjct: 277 ALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKM 336

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNG 150
            +  I PN+             GR  +A +++  +L  G
Sbjct: 337 KDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKG 375



 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 69/118 (58%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++ DRG   D+ITY+++I G C    LD A+ LF K+    ++PN  TFTIL+D   
Sbjct: 297 LIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLW 356

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           K GR+ DA  +F  +L KG   NV TY+ +I+G+ K   ++ A  +  +M +N   PN
Sbjct: 357 KGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 414



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ LF ++ D+G+ P++ T+  ++ G     RL +A ++F+ L       N
Sbjct: 320 LCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLN 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ++I+  CK+G +++A  M SKM + G   N  T+  +I   FK      A  +  
Sbjct: 380 VYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLR 439

Query: 122 EMCENNI 128
           +M    +
Sbjct: 440 QMIARGL 446



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH+        +  ++  RG  P  +T NT+I G C   ++ +A+   +KL     + N 
Sbjct: 104 CHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ 163

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + +  LI+  CK G    A  +  K+  +  K +VV YS +ID   K Q +  A+ ++ E
Sbjct: 164 VGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSE 223

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    IS +            I G+  EA+ L + M+   I PD    + L D
Sbjct: 224 MTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVD 276



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           + + L  +L  +G++PD+ T N +I  +C + ++     +  K+      P+++T   LI
Sbjct: 76  STVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLI 135

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C +G++  A     K+L +G + N V Y  LI+G  K  + ++A  + +++      
Sbjct: 136 KGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTK 195

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           P++    T            EA  L+  M   GI  D +  +TL
Sbjct: 196 PDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTL 239



 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 15/138 (10%)

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE-KGPKANV 97
           S+  +D+AV  F ++ C++  P  I F  ++D+F K      +T+  S  LE KG + ++
Sbjct: 36  SIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHY--STVSLSHRLELKGIQPDL 93

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDS 145
            T + LI+ +     +   F V  ++ +    P+            + G+  +A+  +D 
Sbjct: 94  FTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDK 153

Query: 146 MLRNGIMPDGLLLSTLAD 163
           +L  G   + +   TL +
Sbjct: 154 LLAQGFQLNQVGYGTLIN 171


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 81/124 (65%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++P++ITYNT+I GYC   ++DEA++L   +  V LKPN++
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y  +
Sbjct: 548 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 124 CENN 127
            E+ 
Sbjct: 608 TESG 611



 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 78/124 (62%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++ DRG+  + I +N+II  +C   R+ E+ +LFE +  + +KPN IT+  L
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ +C  G+MD+A  + S M+  G K N VTYS LI+GY K   M+ A  +++EM  + +
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 577

Query: 129 SPNI 132
           SP+I
Sbjct: 578 SPDI 581



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE   D A   + ++ DRG+ PD++TYN+II   C    +D+A+++   +    + P+
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++  +C  G+  +A     KM   G + +VVTYS L+D   K+     A  +++
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFD 325

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P I             G   E   L D M+RNGI PD  + S L
Sbjct: 326 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A+  F Q+ D GL P  I YN++I G C+ N+ + A +L  ++    +  
Sbjct: 415 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+I F  +ID+ CKEGR+ ++  +F  M+  G K NV+TY+ LI+GY  +  M  A  + 
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             M    + PN               R  +A+ L+  M  +G+ PD
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ PD +TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPD 300

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+++L+D  CK GR  +A  +F  M ++G K  + TY  L+ GY     +     + +
Sbjct: 301 VVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 360

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGL 156
            M  N I P+              G+  +AM ++  M + G+ P+ +
Sbjct: 361 LMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAV 407



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 71/121 (58%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + P+   F+ILI 
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+G++D A ++FSKM ++G   N VTY  +I    KS  ++ A   +E+M +  +SP
Sbjct: 380 AYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439

Query: 131 N 131
            
Sbjct: 440 G 440



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 15/171 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+ G  P++ +YN ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I+ F KEG  D A   + +ML++G   +VVTY+ +I    K+Q M  A +V   M +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK 259

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           N + P+             +G+P EA+     M  +G+ PD +  S L DY
Sbjct: 260 NGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD   ++ +IC Y    ++D+A+ +F K+    L PN++T+  +I   CK GR++DA
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
            + F +M+++G     + Y+ LI G       + A ++  EM +  I  N          
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               GR  E+ +L++ M+R G+ P+ +  +TL
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL P+ +TY  +I   C   R+++A+  FE++    L P +I
Sbjct: 383 KQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNI 442

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI   C   + + A  +  +ML++G   N + ++ +ID + K   +  +  ++E M
Sbjct: 443 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELM 502

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + PN+            AG+  EAM+L   M+  G+ P+ +  STL
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 88/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KL   +   GL+P+ +TY+T+I GYC ++R+++A+ LF+++    + P+ IT+ I
Sbjct: 527 MDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 586

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    +  R   A  ++ ++ E G +  + TY+ ++ G  K++    A  +++ +C  +
Sbjct: 587 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 646

Query: 128 I-----SPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           +     + NI        GR  EA  L+ +   NG++P+
Sbjct: 647 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 15/166 (9%)

Query: 11  ALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           AL+L   + D    G  PD+++Y T+I G+      D+A   + ++    + P+ +T+  
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I A CK   MD A  + + M++ G   + +TY+ ++ GY  S   K A    ++M  + 
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++             GR  EA +++DSM + G+ P+     TL
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL LF ++   G+ PDIITYN I+ G     R   A +L+ ++T    +    
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 617

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I++   CK    DDA  MF  +     K    T++ +ID   K      A D++   
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             N + PN              G   E  QL+ SM  NG   D  +L+ +    LQ
Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQ 733



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 54/199 (27%)

Query: 10  AALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLD----------------EAVQ-- 48
           AA+  + ++   G   + PD+ TY  +I   C   RLD                +A+   
Sbjct: 67  AAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFT 126

Query: 49  ------------------LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
                             +  ++T +   PN  ++ IL+   C E R  +A  +   M +
Sbjct: 127 PLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 91  K---GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
               G   +VV+Y+ +I+G+FK  +   A+  Y EM +  I P++            A  
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQA 246

Query: 136 PTEAMQLYDSMLRNGIMPD 154
             +AM++ ++M++NG+MPD
Sbjct: 247 MDKAMEVLNTMVKNGVMPD 265


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL++   + D G +PD  +Y  +ICG+C +++++ A  LF ++    L PN +T+T LI
Sbjct: 478 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D +CK+ ++D AT +   M   G + NV TY+ LI G  K  N   A ++ + M E  I 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           PN+             G  + A+++++ M+  G +P+ L  S+L
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A  LF ++ D GL P+ +TY  +I GYC   +LD A  L E +     +PN  T+ +
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K+     A  +   M+E+G   NVVTY+ +IDG  K+ +   A +++ +M E  
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             PN+             G+  EA  L+  + R+G++PD +    + +  +  SG  EH
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM-SGKVEH 688



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  C    LD+AL++F Q+   G EP+ +TY+T+I G C   R++EA  L  ++    
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P + T T  I A C  G  +DA  +F  M  KG + NV TY+ LI G   S  +K A 
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 375

Query: 118 DVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
            ++  M  + + PN               R   A  + + M RNG  P+
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L   +   G  P++ TYN +I G    N    A +L + +    + PN +
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV 601

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID  CK G    A  MF+KM+E+G   N++TYS LI    +   ++ A +++ E+
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
             + + P+            ++G+   A      M++ G  P
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 69/121 (57%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A +  + ++   G++P+++ YN +I   C    + +A  + +K+   ++ P++ T+T +I
Sbjct: 198 AVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMI 257

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C++  +D A  +F++M ++G + N VTYS LI+G   S  +  AFD+  EM  + I 
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL 317

Query: 130 P 130
           P
Sbjct: 318 P 318



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C+ DA  +LF  + ++G EP++ TY  +I G C    L  A+ LF +++   + PN++T+
Sbjct: 335 CYEDA-WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             LI+   +  R+  A ++ + M   G   N+VTY+ +I GY    + K A  V   M +
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              S N+            +G  T A+++ D M   G  PD
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 2   LIKECHLDAAL----KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LIK CH   A+         L+  GL   +  Y+ ++     L      +  + ++    
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           ++PN + +  +I+A CK+G + DA  +  K+ E     +  TY+ +I G+ +  ++ SA 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            V+ +M +    PN             +GR  EA  L   M+ +GI+P
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILP 318



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++   +  A  +   +   G  P+I+TYN +I GYC L    +A+ +   +       
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  +I  +C  G    A  +   M + G K +  +Y+ LI G+ K   M+SAF ++
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD----GLLLSTLADY 164
            EM ++ + PN       I G     +   A  L + M R+G  P+     +L+  L   
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 165 NLQSSGSQEHC 175
           N   SG++E C
Sbjct: 579 N-NFSGAEELC 588



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 69/131 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +   A +L   + + G+ P+++TY  +I G C       A+++F K+      PN
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI A  +EG++++A  +F+++   G   + +TY  +I+ Y  S  ++ AF+   
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 122 EMCENNISPNI 132
            M +    P +
Sbjct: 695 RMIKAGCQPTL 705



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 36/180 (20%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++ ++G  P+++TY+++I       +++EA  LF +L    L P+ IT+  +I+
Sbjct: 619 ALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-----YFKSQNMKSAFDV------ 119
           A+   G+++ A     +M++ G +  + TY  LI G         Q + +  DV      
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF 738

Query: 120 -YEEMCENNIS----------PNI--------------AGRPTEAMQLYDSMLRNGIMPD 154
            Y+   ++ +S          P +              AGR  EA +L  SM+  G+ PD
Sbjct: 739 GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L G +  +GL PD   YN+++C    +  +D A+ +F+ ++    + +   +  LI 
Sbjct: 783 ANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELIC 842

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           A C+  R  +A + F  ML +    + V  + LIDG  +        D Y+++C
Sbjct: 843 ALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR--------DGYKDLC 888



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  ++D A+ +F  ++ +G E  +  Y  +IC  C L+R  EA   FE +      P+
Sbjct: 809 LLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPD 868

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLE 90
            +   +LID   ++G   D  M F  ++E
Sbjct: 869 DVVQAVLIDGLLRDG-YKDLCMEFLHIME 896


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 23/190 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  AL L  Q+ +RG+  D +TYN++I G CS+ R  E  QL  K+    + P+
Sbjct: 205 LCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPD 264

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILIDA CKEGR+ +A  + + M ++G K ++VTY+ L++GY   +N+  A +++ 
Sbjct: 265 DYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFN 324

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYN---- 165
            M +  + P++                 EAM L+  +    ++P      T+A YN    
Sbjct: 325 RMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVP------TIASYNSLID 378

Query: 166 -LQSSGSQEH 174
            L +SG   H
Sbjct: 379 GLCNSGRISH 388



 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF +L ++ L P I +YN++I G C+  R+    +L +++      P+ +T+ I
Sbjct: 351 VDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNI 410

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CKEGR+ +A  +   M++KG K N+VTY+ ++DGY    N+  A D++  M ++ 
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+I                 EA+ L+  M    ++PD    ++L D
Sbjct: 471 LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLID 518



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   ++ RG +PDI+TYN ++ GYCS   + EA +LF ++    L+P+
Sbjct: 275 LCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LID +CK   +D+A ++F ++  K     + +Y+ LIDG   S  +     + +
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLD 394

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM  +   P++             GR  EA+ +   M++ G+ P+ +  + + D
Sbjct: 395 EMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMD 448



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 68/119 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  +F ++   GLEPDI+ YN +I GYC    +DEA+ LF+++    L P+  ++ 
Sbjct: 455 NVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN 514

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LID  C  GR+     +  +M + G   +V+TY+ L+D + K+Q    A  ++ ++ E
Sbjct: 515 SLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE 573



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 77/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  AL +   +  +G++P+I+TYN ++ GYC  N ++ A  +F ++    L+P+
Sbjct: 415 LCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPD 474

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LI+ +CK   +D+A ++F +M  K    ++ +Y+ LIDG      +    ++ +
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLD 534

Query: 122 EMCENNISPNI 132
           EMC++  SP++
Sbjct: 535 EMCDSGQSPDV 545



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  + L PDI +YN++I G C+L R+    +L +++      P+ IT+ I
Sbjct: 491 VDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNI 550

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DAFCK    D A  +F +++E G   +  T   ++D   K + +K A D  + +  + 
Sbjct: 551 LLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHG 609

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            SPN+             G   EAM L   M  N   PD +    +    LQ +
Sbjct: 610 CSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRN 663



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +++  H   A+ LF QL  +G+ P I T+  +I  Y   +    A  L   +     +PN
Sbjct: 65  IVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPN 124

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  +I+ FC  G +  A      +L +G   +  TY  LI+G  K+  +K+A  + +
Sbjct: 125 LVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQ 184

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM ++++ PN+             G  ++A+ L   +   GI+ D +  ++L D
Sbjct: 185 EMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AAL L  ++    ++P+++ Y+ +I G C    + +A+ L  ++    +  +
Sbjct: 170 LSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLD 229

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  LID  C  GR  + T + +KM+ +    +  T++ LID   K   +  A  V  
Sbjct: 230 AVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLA 289

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +    P+I                 EA +L++ M++ G+ PD L  + L D
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLID 343



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL     L  +G   D  TY T+I G     ++  A+ L +++    ++PN + ++ LID
Sbjct: 144 ALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID 203

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G + DA  + S++ E+G   + VTY+ LIDG       +    +  +M   N+ P
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDP 263

Query: 131 -----NI-------AGRPTEAMQLYDSMLRNGIMPD 154
                NI        GR  EA  +   M + G  PD
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD 299



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A+ LF Q+ + G+ PD  T + I+   C   +L  A    + L      PN  T+TI
Sbjct: 561 FDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTI 619

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           LI+A CK+G   +A ++ SKM +     + +T+  +I    +      A  + EEM
Sbjct: 620 LINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM 675



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+  F ++      P    ++ ++     +     A+ LF +L    + P+  TFT
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFT 94

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY------FKS----QNMKSA 116
           ILI+ +  +     A  + + +L+ G + N+VT++ +I+G+      FK+    QN+ + 
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 117 FDVYEEMCE----NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             ++++       N +S N  G+   A+ L   M ++ + P+ ++ S L D
Sbjct: 155 GYLFDQFTYGTLINGLSKN--GQIKAALHLLQEMEKSSVQPNLVMYSALID 203



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
           C    +D+AV  F ++  V   P +  F  L+ A  + G    A  +F+++  KG   ++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
            T++ LI+ YF   +   AF +   + ++   PN+ 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLV 126



 Score = 39.3 bits (90), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
            L   G  P++ TY  +I   C      EA+ L  K+      P++ITF I+I    +  
Sbjct: 604 HLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRN 663

Query: 77  RMDDATMMFSKMLEKG 92
             D A  +  +M+ +G
Sbjct: 664 ETDKAEKLREEMIARG 679


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ + +LF Q+ + GL PD++TYN++I GY  +  L+E   LF ++  V   P+
Sbjct: 240 LCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPD 299

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+ +CK  +M  A   FS+M   G K NVVTYS LID + K   M+ A  +  
Sbjct: 300 IITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLX 359

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    + PN             AG  TEA +L + ML+ G+  + +  + L D
Sbjct: 360 DMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLD 413



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F ++ + GL+P+++TY+T+I  +C    +  A++L   +    L PN  T+T LID
Sbjct: 319 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK G + +A  + + ML+ G K N+VTY+ L+DG  K+  M  A +V+  M ++ ISP
Sbjct: 379 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 438

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N             A R  +AM++   M    I PD +L  ++
Sbjct: 439 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSI 481



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 12/186 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   ++ A+K+  Q+T+  ++PD+I Y +II G+CS  +L+E   + E++    +  N 
Sbjct: 451 IKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANP 510

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +  T +IDA+ K G+  DA   F +M + G +A +VTY  LIDG  ++  ++ A D +  
Sbjct: 511 VISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCR 570

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M    + PN+A   +             A +L+D M   G+ PD    + L D NL+   
Sbjct: 571 MLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGN 630

Query: 171 SQEHCI 176
            QE  +
Sbjct: 631 LQEALV 636



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KL   +   GL P+  TY ++I   C    L EA +L   +    +K N +
Sbjct: 347 KEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIV 406

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+D  CK GRM +A  +F  ML+ G   N   Y+ L+ GY K++ M+ A  + ++M
Sbjct: 407 TYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQM 466

Query: 124 CENNISPNI-----------AGRPTEAMQL-YDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E NI P++           + R  E  +L  + M   GI  + ++ +T+ D   ++  S
Sbjct: 467 TECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKS 526

Query: 172 QE 173
            +
Sbjct: 527 SD 528



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K F  +   G+ P + TYN +I   C    L+ + +LF ++  + L P+ +T+  LID +
Sbjct: 216 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 275

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G +++   +F++M + G   +++TY+ LI+ Y K + M  AF+ + EM  N + PN+
Sbjct: 276 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 335

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                        G    A++L   M R G++P+    ++L D N ++    E
Sbjct: 336 VTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTE 388



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  F ++ D G+E  I+TY  +I G C    ++ AV  F ++  + L+PN   +T LID
Sbjct: 529 ALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLID 588

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C    ++ A  +F +M  +G   ++  ++ LIDG  K  N++ A  +   M E  I  
Sbjct: 589 GLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF 648

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLL 157
           ++             G   +A + ++ M+  GI+P+ +L
Sbjct: 649 DLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVL 687



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 67/123 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+  F ++   GL+P++  Y ++I G C  N ++ A +LF+++ C  + P+   FT 
Sbjct: 561 VELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTA 620

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID   K G + +A ++ S+M E   + ++  Y+ L+ G+ +   +  A   + EM E  
Sbjct: 621 LIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 680

Query: 128 ISP 130
           I P
Sbjct: 681 ILP 683



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++F  +   G+ P+   Y  ++ GY    R+++A+++ +++T   +KP+
Sbjct: 415 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 474

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +  +I   C + ++++  ++  +M  +G  AN V  + +ID YFK+     A + ++
Sbjct: 475 LILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQ 534

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  +   I            AG    A+  +  ML  G+ P+  + ++L D
Sbjct: 535 EMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLID 588



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A KLF ++  RG+ PDI  +  +I G      L EA+ L  ++T + ++ +   +T 
Sbjct: 596 IESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTS 655

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           L+  F + G +  A   F++M+EKG     V   CL+  Y+K   +  A ++  EM
Sbjct: 656 LVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEM 711



 Score = 42.7 bits (99), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            ++ +   +  L  L+EA + F ++   +  P + +   L+    K G        F+ M
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 221

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           +  G   +V TY+ +ID   K  +++++  ++ +M E  +SP++             G  
Sbjct: 222 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 281

Query: 137 TEAMQLYDSMLRNGIMPD 154
            E   L++ M   G +PD
Sbjct: 282 EEVASLFNEMKDVGCVPD 299



 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K  +L  AL L  ++T+  +E D+  Y +++ G+     L +A + F ++    + P  
Sbjct: 626 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEE 685

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKM 88
           +    L+  + K G++D+A  + ++M
Sbjct: 686 VLCICLLREYYKRGQLDEAIELKNEM 711


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 77/124 (62%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++LF ++   G+ P+++TYN II G C   RLDEA Q  EK+   ++KP+ +T+ +
Sbjct: 213 VDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGV 272

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+   K  R D+A  +  +M ++G   N V Y+ LIDGY +  N+ +A  + ++M  N 
Sbjct: 273 LINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNG 332

Query: 128 ISPN 131
           ISPN
Sbjct: 333 ISPN 336



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  + ++F  +   G+ PD+  ++T++  +C+  R+D+A++LF K+  V + PN
Sbjct: 172 LVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPN 231

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I   CK GR+D+A     KM ++  K ++VTY  LI+G  K +    A  + +
Sbjct: 232 VVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILK 291

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +   +PN              G  + A+Q+ D M+ NGI P+ +  ++L
Sbjct: 292 EMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSL 343



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 70/122 (57%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D+A +L  ++   GL P+++ Y  +I GYC L ++ +   + ++++   + PN IT+TI
Sbjct: 633 VDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTI 692

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK G M  A  + ++M +KG   + VTY+ L +G+ K   M+ A  V + M    
Sbjct: 693 MINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGG 752

Query: 128 IS 129
           IS
Sbjct: 753 IS 754



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 47/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L+ +    G  PD  TY  +I GYC  NR++E  +LF+++  ++++ N++ +  
Sbjct: 528 IEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGT 587

Query: 68  LIDAFCKEGRM-----------------------------------DDATMMFSKMLEKG 92
           LI A+C+ G M                                   D A  +  +M ++G
Sbjct: 588 LIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEG 647

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              NVV Y+ LI GY K   M     + +EM  NN+ PN              G    A 
Sbjct: 648 LSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAA 707

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
           +L + M + GI+PD +  + L +
Sbjct: 708 KLLNEMAQKGIVPDAVTYNALTN 730



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K        +LF  L ++GL P + T N ++      N +  + Q+F+ +    + P+ 
Sbjct: 138 FKHLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDV 197

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             F+ +++AFC  GR+DDA  +F KM + G   NVVTY+ +I G  K+  +  AF   E+
Sbjct: 198 YLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEK 257

Query: 123 MCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M +  + P++              R  EA  +   M   G  P+ ++ +TL D
Sbjct: 258 MEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLID 310



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    D A  +  +++DRG  P+ + YNT+I GYC +  +  A+Q+ + +    + PN
Sbjct: 277 LVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPN 336

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T   LI  +CK  +M+ A  +  +ML  G   N  T++ +I          SA     
Sbjct: 337 SVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIM 396

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM   N  PN              G+ +EA++L+  +L  G   + +  + L  + L  +
Sbjct: 397 EMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALI-HGLCEA 455

Query: 170 GSQE 173
           GS+E
Sbjct: 456 GSKE 459



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A +L   +  RG+     TY+++I G  ++  +D A QL +++    L PN + +T
Sbjct: 597 NMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYT 656

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  +CK G+M     +  +M       N +TY+ +I+G+ K  NMK+A  +  EM + 
Sbjct: 657 ALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQK 716

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P+              G+  EA+++ D M   GI  D +  +TL D
Sbjct: 717 GIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLID 765



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 12/155 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A KL  ++ +RGL  D I+YNT+I   C   +++E  +L E++    ++P+  T+ +L
Sbjct: 459 EEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNML 518

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C  G++++A  ++ +  + G   +  TY  +IDGY K+  ++    +++EM    I
Sbjct: 519 LHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKI 578

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGI 151
             N              G   EA +L D M   GI
Sbjct: 579 EQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGI 613



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 47/195 (24%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------------ 54
           ++  AL++   +   G+ P+ +T N++I GYC  N+++ A  L E++             
Sbjct: 317 NISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFT 376

Query: 55  ------CVQ-----------------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                 C++                  KPN    T+L+   C+ G+  +A  ++ ++LEK
Sbjct: 377 SVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEK 436

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGRPTEA 139
           G  AN VT + LI G  ++ + + A  + +EM E     ++IS N         G+  E 
Sbjct: 437 GFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEG 496

Query: 140 MQLYDSMLRNGIMPD 154
            +L + M+R GI PD
Sbjct: 497 FKLKEEMVRRGIQPD 511



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +C  D+AL    ++  R  +P+      ++ G C   +  EA++L+ +L       N++T
Sbjct: 385 KCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVT 444

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
              LI   C+ G  ++A  +  +MLE+G   + ++Y+ LI    K   ++  F + EEM 
Sbjct: 445 SNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMV 504

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              I P++             G+  EA  L+    +NG  PD      + D
Sbjct: 505 RRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMID 555



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 56/99 (56%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           +++   + P+ ITY  +I G+C L  +  A +L  ++    + P+++T+  L + FCKEG
Sbjct: 677 EMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEG 736

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           +M++A  +   M   G   + +TY+ LIDG+ K   + S
Sbjct: 737 KMEEALKVCDLMSTGGISLDDITYTTLIDGWHKPLTVSS 775



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 43/68 (63%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++ AA KL  ++  +G+ PD +TYN +  G+C   +++EA+++ + ++   +  + IT+T
Sbjct: 702 NMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYT 761

Query: 67  ILIDAFCK 74
            LID + K
Sbjct: 762 TLIDGWHK 769


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ AL L  ++T  G+EP+IIT++T+I GYC++  +  A+ L+ ++T   + P+ +
Sbjct: 421 KEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVV 480

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE- 122
           T+T LIDA  KE  M +A  ++S MLE G   N  T++CL+DG++K   +  A D Y+E 
Sbjct: 481 TYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQEN 540

Query: 123 ----MCENNISPNIA-------GRPTEAMQLYDSMLRNGIMPD 154
                C N++            G    A + +  M   GI PD
Sbjct: 541 NQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPD 583



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  A  LF  +   G++P++  YN +I G+C    + EAV L  ++  + L P+  
Sbjct: 316 KARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVF 375

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI+  C E ++ +A  +F KM  +    +  TY+ LI GY K  NM+ A D+  EM
Sbjct: 376 TYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEM 435

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             + + PNI    T             AM LY  M   GI+PD +  + L D + + +  
Sbjct: 436 TASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANM 495

Query: 172 QE 173
           +E
Sbjct: 496 KE 497



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++    L PD+ TY  +I G C  +++ EA +LF+K+   ++ P+S T+  LI 
Sbjct: 358 AVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIH 417

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CKE  M+ A  + S+M   G + N++T+S LIDGY   +++K+A  +Y EM    I P
Sbjct: 418 GYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVP 477

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++                 EA++LY  ML  GI P+    + L D
Sbjct: 478 DVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVD 522



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  ++ A K+F  +   G+ P++ TY+ +I GYC    + +A  L++++   +L PN
Sbjct: 244 LCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  L+D FCK   +  A  +F  M++ G   N+  Y+CLI G+ KS NM  A  +  
Sbjct: 304 VVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLS 363

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL-----ADY 164
           EM   N+SP+            I  +  EA +L+  M    I P     ++L      +Y
Sbjct: 364 EMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEY 423

Query: 165 NLQSS 169
           N++ +
Sbjct: 424 NMEQA 428



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + AA+ L+ ++T +G+ PD++TY  +I  +     + EA++L+  +    + PN  TF  
Sbjct: 460 IKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFAC 519

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D F KEGR+  A   + +  ++    N V ++CLI+G  ++  +  A   + +M    
Sbjct: 520 LVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCG 579

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           I+P+I              R T+ M L   M++ GI+P+ L+   LA +  Q++G
Sbjct: 580 ITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLARF-YQANG 633



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL  ++T  G++P++  Y   I   C  N+++EA ++FE +    + PN  T++ +ID +
Sbjct: 220 KLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGY 279

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           CK G +  A  ++ ++L      NVV +  L+DG+ K++ + +A  ++  M +  + PN+
Sbjct: 280 CKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNL 339

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       +G   EA+ L   M    + PD    + L +
Sbjct: 340 YVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILIN 382



 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD     +I+ G     R D     ++ +    L P+   + +L     K+G       +
Sbjct: 162 PDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKL 221

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             +M   G K NV  Y+  I    +   M+ A  ++E M ++ + PN+            
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCK 281

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G   +A  LY  +L   ++P+ ++  TL D
Sbjct: 282 TGNVRQAYGLYKEILVAELLPNVVVFGTLVD 312



 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 16/164 (9%)

Query: 13  KLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           +LF  L D +  +  I  ++ +I  +  +   +EA+ +  ++ C    P+S     +++ 
Sbjct: 117 RLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEEALWVSREMKC---SPDSKACLSILNG 173

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             +  R D   + +  M+ +G   +V  Y  L    FK         + +EM    I PN
Sbjct: 174 LVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPN 233

Query: 132 IA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +              +  EA ++++ M ++G++P+    S + D
Sbjct: 234 VYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMID 277


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +  Q+   G++PD +TYNT+I GY +L +  +AV++F+++T   + PN
Sbjct: 256 LCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPN 315

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T +  +   CK GR+++A   F  ML KG K N+++YS L+ GY  +  +    +++ 
Sbjct: 316 TVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFN 375

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGL 156
            M  + I PN              G   EAM +++ M + G+ PD L
Sbjct: 376 LMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVL 422



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+  F  + D+G+EP+   Y  +I G+C+   L +A +L  ++    L P  ++F  
Sbjct: 437 MDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFAS 496

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CKEGR+ +A  +F  ++  G KA+V  ++ LIDGY     M  AF V++ M    
Sbjct: 497 LINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVG 556

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           I P+I    T    L +   +NG + DGL+L
Sbjct: 557 IEPDIVTYGT----LVNGCCKNGRIDDGLIL 583



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 85/148 (57%), Gaps = 4/148 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A ++F  +   G + D+  + ++I GYC + ++ EA ++ + +  V ++P+
Sbjct: 501 LCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPD 560

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L++  CK GR+DD  ++F ++L KG K    TY  ++DG F +    +A ++++
Sbjct: 561 IVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQ 620

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRN 149
           EM E+ I+  I   PT ++ L   + RN
Sbjct: 621 EMIESGIAVTI---PTYSI-LLTGLCRN 644



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 13/178 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A ++   +   G+EPDI+TY T++ G C   R+D+ + LF +L    +KP + T+ I
Sbjct: 542 MSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGI 601

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D     GR   A  MF +M+E G    + TYS L+ G  ++   + A  V++++C  N
Sbjct: 602 ILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMN 661

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +  +I            A R  EA  L+ S+   G++P  +   T+   NL   GS E
Sbjct: 662 VKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPT-VQTYTIMMENLIKEGSVE 718



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF  +   G+ P+   +N ++ GY     + EA+ +FE +    L P+ +T+  +I AFC
Sbjct: 373 LFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFC 432

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           + G MDDA   F+ M++KG + N   Y CLI G+    ++  A ++  E+    + P I 
Sbjct: 433 RMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCIL 492

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       GR  EA +++D ++R G   D  + ++L D
Sbjct: 493 SFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLID 534



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKPNSITFT 66
           LD A   FG L  +G++ D+I  ++++ G C   R DEAV  LF ++  +   P++I+++
Sbjct: 119 LDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYS 178

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            ++ + C +GR   A  +    +++G     NVV YS ++ G FK   +  A D++ EM 
Sbjct: 179 TVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMT 238

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  + PN+            A    +A  +   M+ NG+ PD +  +TL
Sbjct: 239 QQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTL 287



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 12/137 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           +++ Y+T++ G     ++ EA  LF ++T   + PN +T+  +I A CK   +D A  + 
Sbjct: 210 NVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGIL 269

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            +M+  G + + VTY+ LI GY      K A  +++EM    + PN              
Sbjct: 270 RQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKH 329

Query: 134 GRPTEAMQLYDSMLRNG 150
           GR  EA + +DSML  G
Sbjct: 330 GRIEEAREFFDSMLAKG 346



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +L  ++ ++GL P I+++ ++I   C   R+ EA ++F+ +     K +   FT 
Sbjct: 472 LVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTS 531

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +C  G+M +A  +   M+  G + ++VTY  L++G  K+  +     ++ E+    
Sbjct: 532 LIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKG 591

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGI 151
           + P              AGR   A +++  M+ +GI
Sbjct: 592 VKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGI 627



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA ++F ++ + G+   I TY+ ++ G C  N  +EA+ +F+KL  + +K + +   I+I
Sbjct: 614 AAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMI 673

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
               K  R ++A  +F+ + + G    V TY+ +++   K  +++ A  V+  M ++ +S
Sbjct: 674 SKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLS 733

Query: 130 PN 131
           P 
Sbjct: 734 PT 735



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  L LF +L  +G++P   TY  I+ G     R   A ++F+++    +     
Sbjct: 573 KNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIP 632

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+   C+    ++A  +F K+     K ++V  + +I   FK++  + A  ++  +
Sbjct: 633 TYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASI 692

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            +  + P +             G   EA  ++  ML++G+ P    ++ + 
Sbjct: 693 PDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIV 743



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 46  AVQLFEKLTC-----VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           AV LF +++      V L P   T++ILID  C+  R+D A   F  +L +G KA+V+  
Sbjct: 83  AVALFNRMSTGTGPRVAL-PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVV 141

Query: 101 SCLIDGYFKSQNMKSAFDV-YEEMCENNISPN 131
           S L+ G   ++    A DV +  M E    P+
Sbjct: 142 SSLLRGLCDAKRTDEAVDVLFHRMPELGCVPD 173



 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 19/117 (16%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A+ +F +L    ++ DI+  N +I       R +EA  LF  +    L P   T+TI+
Sbjct: 648 EEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIM 707

Query: 69  IDAFCKEGRMDDATMMFSKML-------------------EKGPKANVVTYSCLIDG 106
           ++   KEG +++A  +FS ML                   EKG       Y C +DG
Sbjct: 708 MENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDG 764


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   + A ++  Q+   G+ P++ITYNT+I G+C + +L +A+ L   L    L P+
Sbjct: 313 LCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPS 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ IL+  FCK+G    A  +  +M E+G K + VTY+ LID + +S NM+ A  +  
Sbjct: 373 LVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRS 432

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            M E  ++P+            I GR  EA +L+ SM+     P+ ++ +T+ 
Sbjct: 433 SMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMV 485



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 92/171 (53%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+     A K+  ++ +RG++P  +TY  +I  +   + +++A+QL   +  + L P+  
Sbjct: 385 KKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVH 444

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI  FC +GRM++A+ +F  M+EK  + N V Y+ ++ GY K  +   A  ++ EM
Sbjct: 445 TYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREM 504

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            E  + PN+A             +  EA  L + M+ +GI P   +L+ ++
Sbjct: 505 EEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLIS 555



 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 16/179 (8%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++IK C     ++ +  L  +L + G  P+++ Y T+I G C    +++A  LF ++   
Sbjct: 168 IVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKF 227

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  N  T+T+LI    K G       M+ KM E G   N+ TY+C+++   K    K A
Sbjct: 228 GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDA 287

Query: 117 FDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           F V++EM E  +S NI              +  EA ++ D M  +GI P+ +  +TL D
Sbjct: 288 FKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLID 346



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D+ ++  +I G C    ++++  L  +L      PN + +T LID  CK+G ++ A  +F
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            +M + G  AN  TY+ LI G FK+   K  F++YE+M E+ + PN+             
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKD 281

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           GR  +A +++D M   G+  + +  +TL
Sbjct: 282 GRTKDAFKVFDEMRERGVSCNIVTYNTL 309



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
             +++ ++ + G+ P++ TYN ++   C   R  +A ++F+++    +  N +T+  LI 
Sbjct: 252 GFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIG 311

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+E + ++A  +  +M   G   N++TY+ LIDG+   + +  A  +  ++    +SP
Sbjct: 312 GLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSP 371

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G  + A ++   M   GI P  +  + L D
Sbjct: 372 SLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILID 416


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  L+E  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P++             G   +A  L D M   G+ PD     TL D
Sbjct: 274 LSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLID 325



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI    K+G +  A  +  +M  KG K +  TY  LIDG  K  ++ +AF+  +
Sbjct: 282 LITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 386



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +++   + S ML  G + +V TYS LI+G  K   M  A ++++
Sbjct: 177 VVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 237 EMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLI-YGLXKK 295

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 296 GDLKQAH 302



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 412 EMQRDGHVPSVV 423



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 56/103 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP+  
Sbjct: 329 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDR 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL++   + D G +PD  +Y  +ICG+C +++++ A  LF ++    L PN +T+T LI
Sbjct: 478 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D +CK+ ++D AT +   M   G + NV TY+ LI G  K  N   A ++ + M E  I 
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           PN+             G  + A+++++ M+  G +P+ L  S+L
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A  LF ++ D GL P+ +TY  +I GYC   +LD A  L E +     +PN  T+ +
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K+     A  +   M+E+G   NVVTY+ +IDG  K+ +   A +++ +M E  
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             PN+             G+  EA  L+  + R+G++PD +    + +  +  SG  EH
Sbjct: 631 CLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM-SGKVEH 688



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  C    LD+AL++F Q+   G EP+ +TY+T+I G C   R++EA  L  ++    
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P + T T  I A C  G  +DA  +F  M  KG + NV TY+ LI G   S  +K A 
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAI 375

Query: 118 DVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
            ++  M  + + PN               R   A  + + M RNG  P+
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L   +   G  P++ TYN +I G    N    A +L + +    + PN +
Sbjct: 542 KDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVV 601

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID  CK G    A  MF+KM+E+G   N++TYS LI    +   ++ A +++ E+
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
             + + P+            ++G+   A      M++ G  P
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 69/121 (57%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A +  + ++   G++P+++ YN +I   C    + +A  + +K+   ++ P++ T+T +I
Sbjct: 198 AVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMI 257

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C++  +D A  +F++M ++G + N VTYS LI+G   S  +  AFD+  EM  + I 
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL 317

Query: 130 P 130
           P
Sbjct: 318 P 318



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C+ DA  +LF  + ++G EP++ TY  +I G C    L  A+ LF +++   + PN++T+
Sbjct: 335 CYEDA-WRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTY 393

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             LI+   +  R+  A ++ + M   G   N+VTY+ +I GY    + K A  V   M +
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              S N+            +G  T A+++ D M   G  PD
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 16/168 (9%)

Query: 2   LIKECHLDAAL----KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LIK CH   A+         L+  GL   +  Y+ ++     L      +  + ++    
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           ++PN + +  +I+A CK+G + DA  +  K+ E     +  TY+ +I G+ +  ++ SA 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            V+ +M +    PN             +GR  EA  L   M+ +GI+P
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILP 318



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++   +  A  +   +   G  P+I+TYN +I GYC L    +A+ +   +       
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  +I  +C  G    A  +   M + G K +  +Y+ LI G+ K   M+SAF ++
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD----GLLLSTLADY 164
            EM ++ + PN       I G     +   A  L + M R+G  P+     +L+  L   
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 165 NLQSSGSQEHC 175
           N   SG++E C
Sbjct: 579 N-NFSGAEELC 588



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 69/131 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +   A +L   + + G+ P+++TY  +I G C       A+++F K+      PN
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI A  +EG++++A  +F+++   G   + +TY  +I+ Y  S  ++ AF+   
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 122 EMCENNISPNI 132
            M +    P +
Sbjct: 695 RMIKAGCQPTL 705



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 36/180 (20%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++ ++G  P+++TY+++I       +++EA  LF +L    L P+ IT+  +I+
Sbjct: 619 ALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-----YFKSQNMKSAFDV------ 119
           A+   G+++ A     +M++ G +  + TY  LI G         Q + +  DV      
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSF 738

Query: 120 -YEEMCENNIS----------PNI--------------AGRPTEAMQLYDSMLRNGIMPD 154
            Y+   ++ +S          P +              AGR  EA +L  SM+  G+ PD
Sbjct: 739 GYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 8/114 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L G +  +GL PD   YN+++C    +  +D A+ +F+ ++    + +   +  LI 
Sbjct: 783 ANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELIC 842

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           A C+  R  +A + F  ML +    + V  + LIDG  +        D Y+++C
Sbjct: 843 ALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR--------DGYKDLC 888



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  ++D A+ +F  ++ +G E  +  Y  +IC  C L+R  EA   FE +      P+
Sbjct: 809 LLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPD 868

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLE 90
            +   +LID   ++G   D  M F  ++E
Sbjct: 869 DVVQAVLIDGLLRDG-YKDLCMEFLHIME 896


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 82/132 (62%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE  L  A +L+ ++  RG+ P+IITYNT++ GYC  NRL EA  + + +   +  P
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TFT LI  +C   R+DD   +F  + ++G  AN VTYS L+ G+ +S  +K A +++
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 121 EEMCENNISPNI 132
           +EM  + + P++
Sbjct: 427 QEMVSHGVLPDV 438



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 95/173 (54%), Gaps = 12/173 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA+ LF ++  +G++  ++TYN+++ G C   + ++   L + +   ++ PN ITF +
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D F KEG++ +A  ++ +M+ +G   N++TY+ L+DGY     +  A ++ + M  N 
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            SP+I              R  + M+++ ++ + G++ + +  S L     QS
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 13/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A+ L  ++ + G +PD++TYN+I+ G C       A+ L  K+    +K +
Sbjct: 168 LFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKAD 227

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ +ID+ C++G +D A  +F +M  KG K++VVTY+ L+ G  K+        + +
Sbjct: 228 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           +M    I PN+             G+  EA +LY  M+  GI P+ +  +TL D Y +Q+
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347

Query: 169 SGSQEH 174
             S+ +
Sbjct: 348 RLSEAN 353



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++ +R ++ D+ TY+TII   C    +D A+ LF+++    +K + +T+  L+ 
Sbjct: 212 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+ +D  ++   M+ +    NV+T++ L+D + K   ++ A ++Y+EM    ISP
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI              R +EA  + D M+RN   PD +  ++L
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 374



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 67/117 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ AL++F  L    ++  I+ Y TII G C   ++++A  LF  L C  +KPN +T+T
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++I   CK+G + +A ++  KM E G   N  TY+ LI  + +  ++ ++  + EEM
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEM 569



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 72/121 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++   G+ PD++TY  ++ G C   +L++A+++FE L   ++    + +T +I+
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIE 481

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+++DA  +F  +  KG K NV+TY+ +I G  K  ++  A  +  +M E+  +P
Sbjct: 482 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAP 541

Query: 131 N 131
           N
Sbjct: 542 N 542



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D  +K+F  ++ RGL  + +TY+ ++ G+C   ++  A +LF+++    + P+ +T+ 
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+D  C  G+++ A  +F  + +      +V Y+ +I+G  K   ++ A++++  +   
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            + PN+             G  +EA  L   M  +G  P+    +TL   +L+
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             +  L    QL   G+  +I T N +I  +C   +   A  +  K+  +  +P++ TF 
Sbjct: 103 QFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFN 162

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI     EG++ +A ++  +M+E G + +VVTY+ +++G  +S +   A D+  +M E 
Sbjct: 163 TLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEER 222

Query: 127 NISPNIAGRPTEAMQLYDSMLRNG 150
           N+  ++    T    + DS+ R+G
Sbjct: 223 NVKADVFTYST----IIDSLCRDG 242



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  LF  L  +G++P+++TY  +I G C    L EA  L  K+      PN  T+ 
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYN 547

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            LI A  ++G +  +  +  +M   G  A+  +   +ID
Sbjct: 548 TLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  AL L  Q+ +RG+  D +TYN++I G CS+ R  E  QL  K+    + P+
Sbjct: 205 LCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPD 264

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILIDA CKEGR+ +A  + + M ++G K ++VTY+ L++GY   +N+  A +++ 
Sbjct: 265 DYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFN 324

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            M +  + P++                 EAM L+  +    ++P      T+A YN
Sbjct: 325 RMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVP------TIASYN 374



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF +L ++ L P I +YN++I G C+  R+    +L +++      P+ +T+ I
Sbjct: 351 VDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNI 410

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CKEGR+ +A  +   M++KG K N+VTY+ ++DGY    N+  A D++  M ++ 
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+I                 EA+ L+  M    ++PD    ++L D
Sbjct: 471 LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLID 518



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   ++ RG +PDI+TYN ++ GYCS   + EA +LF ++    L+P+
Sbjct: 275 LCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LID +CK   +D+A ++F ++  K     + +Y+ LIDG   S  +     + +
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLD 394

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM  +   P++             GR  EA+ +   M++ G+ P+ +  + + D
Sbjct: 395 EMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMD 448



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 68/119 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  +F ++   GLEPDI+ YN +I GYC    +DEA+ LF+++    L P+  ++ 
Sbjct: 455 NVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN 514

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LID  C  GR+     +  +M + G   +V+TY+ L+D + K+Q    A  ++ ++ E
Sbjct: 515 SLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE 573



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 77/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  AL +   +  +G++P+I+TYN ++ GYC  N ++ A  +F ++    L+P+
Sbjct: 415 LCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPD 474

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LI+ +CK   +D+A ++F +M  K    ++ +Y+ LIDG      +    ++ +
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLD 534

Query: 122 EMCENNISPNI 132
           EMC++  SP++
Sbjct: 535 EMCDSGQSPDV 545



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  + L PDI +YN++I G C+L R+    +L +++      P+ IT+ I
Sbjct: 491 VDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNI 550

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DAFCK    D A  +F +++E G   +  T   ++D   K + +K A D  + +  + 
Sbjct: 551 LLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHG 609

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            SPN+             G   EAM L   M  N   PD +    +    LQ +
Sbjct: 610 CSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRN 663



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +++  H   A+ LF QL  +G+ P I T+  +I  Y   +    A  L   +     +PN
Sbjct: 65  IVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPN 124

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  +I+ FC  G +  A      +L +G   +  TY  LI+G  K+  +K+A  + +
Sbjct: 125 LVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQ 184

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM ++++ PN+             G  ++A+ L   +   GI+ D +  ++L D
Sbjct: 185 EMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AAL L  ++    ++P+++ Y+ +I G C    + +A+ L  ++    +  +
Sbjct: 170 LSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLD 229

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  LID  C  GR  + T + +KM+ +    +  T++ LID   K   +  A  V  
Sbjct: 230 AVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLA 289

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +    P+I                 EA +L++ M++ G+ PD L  + L D
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLID 343



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 47/197 (23%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYC-------------------------- 38
           + H   A  L   +   G +P+++T+NTII G+C                          
Sbjct: 103 QSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFT 162

Query: 39  --------SLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
                   S N ++  A+ L +++    ++PN + ++ LID  CK+G + DA  + S++ 
Sbjct: 163 YGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-----NI-------AGRPT 137
           E+G   + VTY+ LIDG       +    +  +M   N+ P     NI        GR  
Sbjct: 223 ERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282

Query: 138 EAMQLYDSMLRNGIMPD 154
           EA  +   M + G  PD
Sbjct: 283 EAQGVLAMMSKRGEKPD 299



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A+ LF Q+ + G+ PD  T + I+   C   +L  A    + L      PN  T+TI
Sbjct: 561 FDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTI 619

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           LI+A CK+G   +A ++ SKM +     + +T+  +I    +      A  + EEM
Sbjct: 620 LINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM 675



 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+  F ++      P    ++ ++     +     A+ LF +L    + P+  TFT
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFT 94

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY------FKS----QNMKSA 116
           ILI+ +  +     A  + + +L+ G + N+VT++ +I+G+      FK+    QN+ + 
Sbjct: 95  ILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQ 154

Query: 117 FDVYEEMCE----NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             ++++       N +S N  G+   A+ L   M ++ + P+ ++ S L D
Sbjct: 155 GYLFDQFTYGTLINGLSKN--GQIKAALHLLQEMEKSSVQPNLVMYSALID 203



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
           C    +D+AV  F ++  V   P +  F  L+ A  + G    A  +F+++  KG   ++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
            T++ LI+ YF   +   AF +   + ++   PN+ 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLV 126



 Score = 39.3 bits (90), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
            L   G  P++ TY  +I   C      EA+ L  K+      P++ITF I+I    +  
Sbjct: 604 HLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRN 663

Query: 77  RMDDATMMFSKMLEKG 92
             D A  +  +M+ +G
Sbjct: 664 ETDKAEKLREEMIARG 679


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PDI TYN +I  Y    R+D AV++FE+L     +P+ I++  LI+   
Sbjct: 452 LYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLG 511

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A M F +M EKG   +VVTYS LI+ + K+  ++ A  +++EM     SPN+ 
Sbjct: 512 KNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLV 571

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      +GR  EA+ LY  + + G+ PD +  + L
Sbjct: 572 TYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 611



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 75/124 (60%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D+A+K+F +L +   +PD+I+YN++I        +DEA   F+++    L P+ +T++ 
Sbjct: 481 VDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYST 540

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ F K  +++ A  +F +M+ +G   N+VTY+ L+D   +S     A D+Y ++ +  
Sbjct: 541 LIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQG 600

Query: 128 ISPN 131
           ++P+
Sbjct: 601 LTPD 604



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +++C  D A  ++  +   G   DI  +N ++       ++D+A ++FE +     +P++
Sbjct: 201 LRDC--DKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDT 258

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+TI+I    K G+ D++  +F  MLEKG   N++ Y+ +I+   K +    A  ++ +
Sbjct: 259 FTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSK 318

Query: 123 MCENNISPN 131
           M EN   PN
Sbjct: 319 MVENGCQPN 327



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 61/102 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ ++GL PD++TY+T+I  +   ++++ A  LF+++      PN
Sbjct: 510 LGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPN 569

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + GR  +A  +++K+ ++G   + +TY+ L
Sbjct: 570 LVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 611



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A K+F  +  R  EPD  TY  +I       + DE++ LF+ +       N
Sbjct: 233 LAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLN 292

Query: 62  SITFTILIDAFCKEGRM-DDATMMFSKMLEKGPKANVVTYSCLID 105
            I +  +I+A  K GRM D A ++FSKM+E G + N  TYS L++
Sbjct: 293 LIAYNTMIEALAK-GRMADKAVLLFSKMVENGCQPNEFTYSVLLN 336



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A +LF  + +   + D   Y +++   CS  ++ EA+ L  +     +  +
Sbjct: 370 LSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTD 429

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I +  +  A  +  ++     ++ KM + GP  ++ TY+ LI  Y ++  + SA  ++E
Sbjct: 430 TIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFE 489

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+  +N  P++             G   EA   +  M   G+ PD +  STL +
Sbjct: 490 ELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIE 543



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 12/158 (7%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
           G +   GL  +  +Y  ++ GY  L   D+A  ++  +       +   F +L+DA  K+
Sbjct: 177 GLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKD 236

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGR 135
            ++D A  +F  M  +  + +  TY+ +I    K+     +  +++ M E   + N+   
Sbjct: 237 QKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAY 296

Query: 136 PT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            T            +A+ L+  M+ NG  P+    S L
Sbjct: 297 NTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVL 334


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D   +LF ++  RG+ PD++ Y++II G C   R + A  LF ++    + PN
Sbjct: 248 LCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPN 307

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +LIDA CK G+M++A  +   M+++G   +  TY+ LIDG+     +  A D++ 
Sbjct: 308 VVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFV 367

Query: 122 EMCENNI-----SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    I     S N+       +GR  EA +LY  M+   IMP  +  +TL
Sbjct: 368 SMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTL 419



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH    + A  LF ++ D G+ P+++T+N +I   C   +++EA  L + +      P++
Sbjct: 284 CHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDT 343

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  LID FC EGR+DDA  +F  M  KG + + V+Y+ LI+GY KS  M  A  +Y E
Sbjct: 344 FTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYRE 403

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P +             G+  +A  L+  M  + + P+    + L D
Sbjct: 404 MMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLD 456



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 80/132 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL  A++LF  L +   +P I  +N +I G C   +++ A +LF +L+   L+PN
Sbjct: 458 LCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPN 517

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+T++I   CK G++++A  +F  M EKG   N+VT++ L+ G+ ++  M+   ++ +
Sbjct: 518 VITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQ 577

Query: 122 EMCENNISPNIA 133
           EM E + SP+ +
Sbjct: 578 EMAEKDFSPDAS 589



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  L   +  RG  PD  TYNT+I G+C   R+D+A  LF  +    ++ +
Sbjct: 318 LCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETD 377

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++ +LI+ +CK GRM +A  ++ +M+ K     V+TY+ L+ G F+   ++ A++++ 
Sbjct: 378 AVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFG 437

Query: 122 EMCENNISP-----NIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM  ++++P     NI           +EAM+L+  +  +   P   + + L D
Sbjct: 438 EMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLID 491



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A  LFG++    L P+  TYN ++ G C  N L EA++LF  L     +P+
Sbjct: 423 LFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPS 482

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F  LID  CK  +++ A  +F+++  +G + NV+TY+ +I G  KS  +++A D++ 
Sbjct: 483 IQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFL 542

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E   +PN+    T            + ++L   M      PD   +S + D
Sbjct: 543 GMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVD 596



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 18/169 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            + L+ +++  GL PD IT N +I  YC+LN++D  + +  ++      PN++TFT L+ 
Sbjct: 111 VISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVK 170

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN--- 127
             C   R+ +AT +  KM+  G + NVVTY  L++G   + N   A  ++EEM   N   
Sbjct: 171 GLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGF 230

Query: 128 ---ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              I PN+             G   +  +L+  M   GI PD +  S++
Sbjct: 231 GVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSI 279



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 18/174 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------CVQLKPN 61
           +  A  L  ++   G  P+++TY T++ G C       AV+L E++        V +KPN
Sbjct: 178 ISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPN 237

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +ID+ CK+G +D    +F +M  +G   +VV YS +I G   +   + A  ++ 
Sbjct: 238 LVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFN 297

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  + PN+            AG+  EA  L   M++ G  PD    +TL D
Sbjct: 298 EMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLID 351



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A KL+ ++  + + P +ITYNT++ G     ++ +A  LF ++    L P S 
Sbjct: 390 KSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESC 449

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+D  CK   + +A  +F  +     + ++  ++CLIDG  K++ ++ A +++  +
Sbjct: 450 TYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRL 509

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + PN+            +G+   A  L+  M   G  P+ +  +TL
Sbjct: 510 SHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTL 559



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           ++P+++ Y TII   C    +D+  +LF ++    + P+ + ++ +I   C  GR + A 
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----------- 131
            +F++M+++G   NVVT++ LID   K+  M+ A  + + M +   SP+           
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGF 353

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + GR  +A  L+ SM   GI  D +  + L +
Sbjct: 354 CLEGRIDDARDLFVSMESKGIETDAVSYNVLIN 386



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  L D    P I ++NT++     + R  + + L+++++ + L P+ IT  ILI+
Sbjct: 76  AFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILIN 135

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C   ++D    +  +ML +G   N VT++ L+ G      +  A  +  +M      P
Sbjct: 136 CYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRP 195

Query: 131 NIA------------GRPTEAMQLYDSML 147
           N+             G    A++L++ ML
Sbjct: 196 NVVTYGTLLNGLCMTGNTMLAVKLHEEML 224


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A +L  ++   G+ PD +TY +II  +    RL +  ++F ++    L P+
Sbjct: 524 LCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPS 583

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+LI     +GR++ A + FS+M EKG   NV+TY+ LI+G  K + M  A++ + 
Sbjct: 584 VVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFA 643

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  I PN              G   EA+ LY  ML  G+ PD    S L
Sbjct: 644 EMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSAL 695



 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++  +G  PD+I YN ++ G C L  L+EA +L +K+    + P+ +T+T +I 
Sbjct: 498 AFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIH 557

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  + GR+     +F +ML KG   +VVTY+ LI G+     ++ AF  + EM E  I P
Sbjct: 558 AHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILP 617

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N+              R  +A   +  M+  GI P+    + L + N      QE
Sbjct: 618 NVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQE 672



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A++++  + + G++P I+TYNT++  YC   ++ + + L  ++      PN +T+ +
Sbjct: 215 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 274

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+   K+G  + A  +  +ML+ G K +  TY+ LI GYF    +  A  + EEM    
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG 334

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            SP +A            GR ++AMQ    ML N ++PD +  +TL
Sbjct: 335 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 380



 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 6   CHLDAALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C L        QL+D     L PD+++YNT+I GYC L  L +A  LF++L  + L P  
Sbjct: 350 CKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  L+D  C++G ++ A  +  +M+ +G   ++VTY+ L++G  K  ++  A + ++E
Sbjct: 410 VTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDE 469

Query: 123 MCENNI-------SPNIAGR-----PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    +       +  I G       + A  L + ML  G  PD ++ + + D
Sbjct: 470 MLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVD 522



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   + A  L G++   GL+    TYN +I GY +   L EA+ L E++      P 
Sbjct: 279 LSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPT 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   I   CK GRM DA    S ML      +VV+Y+ LI GY +  N+  AF +++
Sbjct: 339 VATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFD 398

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+    + P I             G    A QL   M+  GI PD +  + L +
Sbjct: 399 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A + F ++   GLE D   Y T I G   L     A  L E++      P+ I + +
Sbjct: 460 LSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNV 519

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D  CK G +++A+ +  KM+  G   + VTY+ +I  + ++  ++   +++ EM    
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKG 579

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++P++             GR   A   +  M   GI+P+ +  ++L +
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLIN 627



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 60/98 (61%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A   F ++ ++G+ P++ITYN++I G C + R+D+A   F ++    + PN  ++T
Sbjct: 599 RLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYT 658

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           ILI+  C  G   +A  ++ +ML++G + +  T+S L+
Sbjct: 659 ILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALL 696



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL L  ++  +G  P + TYN+ I G C L R+ +A+Q    +    L P+ +++  
Sbjct: 320 LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNT 379

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C+ G +  A ++F ++        +VTY+ L+DG  +   ++ A  +  EM    
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 439

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
           I+P+I             G  + A + +D ML  G+  D    +T
Sbjct: 440 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484



 Score = 43.1 bits (100), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 50/108 (46%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E  +   + +I  Y   + +++ + +F+K+   +L P+      ++     +  M  A  
Sbjct: 161 EVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVE 220

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           ++  M E G K  +VTY+ L+D Y K   ++   D+  EM     +PN
Sbjct: 221 VYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPN 268



 Score = 38.9 bits (89), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 42/77 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ ++G+ P+  +Y  +I   C++    EA+ L++++    ++P+
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688

Query: 62  SITFTILIDAFCKEGRM 78
           S T + L+    K+ ++
Sbjct: 689 SCTHSALLKQLGKDCKL 705


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 95/161 (59%), Gaps = 12/161 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE  L  A +L+ ++  RG+ PD ITY+++I G+C  NRL EA Q+ + +     +P
Sbjct: 323 VFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEP 382

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T++ILI+++CK  R+D+   +F ++  KG  A+ VTY+ L+ G+ +S  +  A +++
Sbjct: 383 NIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELF 442

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRN 149
           +EM    + P++             G   +A+++++ M ++
Sbjct: 443 QEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKS 483



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +LD AL LF ++  +G++ D++ Y++II G C+  R D+  ++  ++    + PN
Sbjct: 254 LCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPN 313

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LID F KEG++ +A  ++++M+ +G   + +TYS LIDG+ K   +  A  + +
Sbjct: 314 VVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLD 373

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M      PNI            A R    M+L+  +   G++ D +  +TL     QS 
Sbjct: 374 LMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSG 433



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++   G E + ITY  ++   C       A+ LF K+    +K + + ++I+ID
Sbjct: 193 ALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVID 252

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK+G +DDA  +F++M  KG KA+VV YS +I G            +  EM   NI P
Sbjct: 253 SLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIP 312

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  EA +LY+ M+  GI PD +  S+L D
Sbjct: 313 NVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLID 357



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  + G+    G EP+ IT++T+I G+C   R+ EAV L +++  ++ +PN +T   LI+
Sbjct: 123 AFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLIN 182

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C +GR+ +A ++  +M++ G +AN +TY  +++   KS N   A D++ +M E +I  
Sbjct: 183 GLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKA 242

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G   +A+ L++ M   GI  D +  S++
Sbjct: 243 SVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSI 285



 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL LF ++ +R ++  ++ Y+ +I   C    LD+A+ LF ++    +K + + ++ +I 
Sbjct: 228 ALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIG 287

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C +GR DD   M  +M+ +    NVVT+S LID + K   +  A ++Y EM    I+P
Sbjct: 288 GLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAP 347

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +       I G     R  EA Q+ D M+  G  P+ +  S L +
Sbjct: 348 DTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILIN 392



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 12/179 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  ++LF +++ +GL  D +TYNT++ G+C   +L+ A +LF+++    + P+ +
Sbjct: 396 KAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVV 455

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+D  C  G +  A  +F KM +      +  Y+ +I G   +  +  A+ ++  +
Sbjct: 456 TYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSL 515

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
               + P++             G  +EA  L+  M  +G  P     + L   +L  SG
Sbjct: 516 SVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSG 574



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 66/117 (56%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  AL++F ++    +   I  YN II G C+ +++D+A  LF  L+   +KP+ +T+ 
Sbjct: 469 ELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYN 528

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++I   CK+G + +A M+F KM E G   +  TY+ LI  +     + S+ ++ EEM
Sbjct: 529 VMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEM 585



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 23/142 (16%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L    ++   G+E ++ T N +I  +C   +L  A  +  +      +PN+ITF+ L
Sbjct: 86  DLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTL 145

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ FC EGR+ +A  +  +M+E   + NVVT + LI+G                +C    
Sbjct: 146 INGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLING----------------LC---- 185

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
              + GR TEA+ L D M++ G
Sbjct: 186 ---LKGRVTEALVLIDRMVKYG 204



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  LF  L+ +G++PD++TYN +I G C    L EA  LF K+      P+  T+ 
Sbjct: 504 KVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYN 563

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           ILI A      +  +  +  +M  +G  A+  T   ++
Sbjct: 564 ILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVV 601


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L +FG+L   GL PD+ +YN +I G+     +D+A  LF K+    + PN +T++ L
Sbjct: 135 DLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSL 194

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK   MD A  +  +M+  G + N +TY+CLI GY  S   K +  V++EM  + +
Sbjct: 195 INGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLL 254

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            P++             GR  EA  ++DSM+  G  PD
Sbjct: 255 VPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD 292



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 13/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF  +   G+ PD   +NT+I  Y  L  +D+++ +FE +T   + P+ ITF+ +I AFC
Sbjct: 315 LFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFC 374

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--- 130
           + GR+DDA   F+ M++ G   +   YSCLI G    +++  A ++  +M    I P   
Sbjct: 375 RLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCI 434

Query: 131 --------NI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   N+   GR  E   + D ++  G  P+ +  ++L D
Sbjct: 435 KFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVD 477



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 75/131 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +     +   +   G  P++IT+N+++ GYC +  + EAV L + +  V ++P+
Sbjct: 444 LCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPD 503

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+D +CK GR+DDA  +F  ML K      V+Y+ ++ G F+++    A +++ 
Sbjct: 504 IYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFH 563

Query: 122 EMCENNISPNI 132
           EM E+ ++ +I
Sbjct: 564 EMIESGMAVSI 574



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I TYN +I  Y    R D  + +F +L    L P+  ++  LID F KEG +D A  +
Sbjct: 116 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 175

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------I 132
           F KM E+G   NVVTYS LI+G  K++ M  A  V  +M    + PN             
Sbjct: 176 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 235

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
           +G   E+++++  M  + ++PD
Sbjct: 236 SGMWKESVRVFKEMSSSLLVPD 257



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D +L +F  +T +G+ PDIIT++T+I  +C L RLD+A++ F  +    + P++  ++ 
Sbjct: 344 MDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSC 403

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           LI   C    +  A  + S ML KG P   +  ++ +I+   K   +    DV + +   
Sbjct: 404 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 463

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN+             G   EA+ L DSM   G+ PD    +TL D
Sbjct: 464 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVD 512



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++  Q+   G+ P+ +TYN +I GY +     E+V++F++++   L P+
Sbjct: 198 LCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPD 257

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                  + A CK GR+ +A  +F  M+ KGPK +V++Y  L+ GY  +  +    +++ 
Sbjct: 258 VGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFN 317

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    + P+              G   +++ +++ M + G+ PD +  ST+
Sbjct: 318 VMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 369



 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A+ L   +   G+EPDI TYNT++ GYC   R+D+A+ LF  +   ++   S+++ 
Sbjct: 484 NMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYN 543

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++    +  R   A  MF +M+E G   ++ TY+ ++ G  ++     A  + E++   
Sbjct: 544 IILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSM 603

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           N+  +I             GR  EA +L+ ++   G++P
Sbjct: 604 NVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVP 642



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A ++F ++ + G+   I TY T++ G C  N  DEA  L EKL  + +K + +TF I+I
Sbjct: 557 VAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVI 616

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GR  +A  +F+ +   G    ++TY  +I    K ++ + A +++  M +++ +
Sbjct: 617 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCT 676

Query: 130 PN 131
           P+
Sbjct: 677 PD 678



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNT-IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           L  A +L   +  +G+ P  I + T II   C   R+ E   + + +     +PN ITF 
Sbjct: 414 LVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFN 473

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D +C  G M +A  +   M   G + ++ TY+ L+DGY K   +  A  ++ +M   
Sbjct: 474 SLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHK 533

Query: 127 -----NISPNI-------AGRPTEAMQLYDSMLRNGI 151
                ++S NI       A R   A +++  M+ +G+
Sbjct: 534 RVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGM 570



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 46  AVQLFEKL---TCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           AV+LF+++    C +  P   T+ ILI+ + +  R D    +F ++L  G   +V +Y+ 
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 158

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           LIDG+ K   +  A D++ +M E  I PN+ 
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVV 189



 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF  ++  GL P I+TY  +I         ++A  LF  +      P+S     +I 
Sbjct: 628 AKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIR 687

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
               +G +  A    SK+ +KG      T S LI  Y  S N K
Sbjct: 688 MLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLI--YLFSVNGK 729


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 93/161 (57%), Gaps = 12/161 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +  +D A+K+F  +  +G  PD+I+Y T+I GYC ++++D+A+ LFE++   +  P++ T
Sbjct: 323 QSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKT 382

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  L+   C  GR+ DA  +F +M+ +G   ++VTYS L+D   K+++++ A  + + + 
Sbjct: 383 YNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIE 442

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            +N++P+I            AG    A  L+ ++   G+ P
Sbjct: 443 ASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHP 483



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF Q+  +G+ PDI TY +++   C+L        L  ++   ++ P+
Sbjct: 215 LCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPD 274

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG++ +A  +   M+++G + +VVTY+ L+DG+     M  A  V++
Sbjct: 275 VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFD 334

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P++    T            +AM L++ M R   +PD    +TL
Sbjct: 335 MMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTL 386



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+ P++ T N +I  +C LNR+  A  +  K+  +  +P+  TFT
Sbjct: 80  HYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFT 139

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F KM+++G + NVVTY  LI+G  K  N  +A  +   M + 
Sbjct: 140 TLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG 199

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N  P++              + TEA  L+  M+  GI PD    ++L
Sbjct: 200 NCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSL 246



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 13/180 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  AL LF ++ D G +P+++TY T+I G C +     A++L   +     +P+
Sbjct: 145 LCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPD 204

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T +ID+ CK+ ++ +A  +FS+M+ +G   ++ TY+ L+         K    +  
Sbjct: 205 VVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLN 264

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           +M  + I P++             G+ TEA ++ D M++ G+ PD +  +TL D + LQS
Sbjct: 265 QMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQS 324



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  +  ++   G +PD  T+ T+I G C   ++ EA+ LF+K+     +PN 
Sbjct: 111 CHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNV 170

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G    A  +   M +   + +VV Y+ +ID   K + +  AF+++ +
Sbjct: 171 VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQ 230

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + I+PD ++ ST+ D
Sbjct: 231 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 283



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  +   PD  TYNT++ G C + RL +A+ LF ++      P+ +T++I
Sbjct: 361 IDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 420

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D+ CK   +++A  +   +       ++  Y+ +IDG  ++  +++A D++  +    
Sbjct: 421 LLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG 480

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           + P++             G   EA +L+  M  N   PDG   +T+A   LQ++
Sbjct: 481 LHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNN 534



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 17/175 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++  RG  PD++TY+ ++   C    L+EA+ L + +    L P+ 
Sbjct: 391 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDI 450

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             + I+ID  C+ G ++ A  +FS +  KG   +V TY+ +I G  K   +  A  ++ E
Sbjct: 451 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFME 510

Query: 123 MCENNISP-----NIAGR-------PTEAMQLYDSMLRNGIMPDG--LLLSTLAD 163
           M  N+ SP     N   R          A+QL + ML  G   D   L+LS L++
Sbjct: 511 MDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCFLMLSVLSE 565



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 61/130 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+ L   +    L PDI  YN II G C    L+ A  LF  L+   L P+
Sbjct: 425 LCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS 484

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I   CK G +++A  +F +M       +  TY+ +  G+ ++     A  + E
Sbjct: 485 VWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLE 544

Query: 122 EMCENNISPN 131
           EM     S +
Sbjct: 545 EMLARGFSAD 554


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +C  + A +L GQ+ ++GL P++ITYN +I GYC    +++AV + E +   +L PN
Sbjct: 368 LCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPN 427

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  +CK   +  A  + +KMLE+    +VVTY+ LIDG  +S N  SA+ +  
Sbjct: 428 TRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLS 486

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +  + P+             + R  EA  L+DS+ + G+ P+ ++ + L D
Sbjct: 487 LMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID 540



 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 11/173 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A+ LF ++ D    P + TY  +I   C   R  EA+ L +++    +KPN  T+T
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LID+ C + + + A  +  +MLEKG   NV+TY+ LI+GY K   ++ A DV E M   
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESR 422

Query: 127 NISPN-------IAG----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            +SPN       I G       +AM + + ML   ++PD +  ++L D   +S
Sbjct: 423 KLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475



 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D+A +L   + DRGL PD  TY ++I   C   R++EA  LF+ L    + PN + +T
Sbjct: 477 NFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYT 536

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G++D+A +M  KML K    N +T++ LI G      +K A  + E+M + 
Sbjct: 537 ALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKI 596

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + P ++            G    A   +  ML +G  PD    +T 
Sbjct: 597 GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  LF  L  +G+ P+++ Y  +I GYC   ++DEA  + EK+      PN
Sbjct: 507 LCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+TF  LI   C +G++ +AT++  KM++ G +  V T + LI    K  +   A+  ++
Sbjct: 567 SLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQ 626

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M  +   P+              GR  +A  +   M  NG+ PD    S+L
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A+ +  ++ +R + PD++TYN++I G C     D A +L   +    L P+  T+T
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYT 501

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID+ CK  R+++A  +F  + +KG   NVV Y+ LIDGY K+  +  A  + E+M   
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK 561

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           N  PN              G+  EA  L + M++ G+ P
Sbjct: 562 NCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQP 600



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A +   ++ + GL+PD  TY ++I GYC    LD A ++F ++     + N + +T
Sbjct: 233 NVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYT 292

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C   R+D+A  +F KM +      V TY+ LI     S+    A ++ +EM E 
Sbjct: 293 HLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEET 352

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I PNI              +  +A +L   ML  G+MP+ +  + L +
Sbjct: 353 GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D   +++ ++ +  + P+I TYN ++ GYC L  ++EA Q   K+    L P+  T+T 
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C+   +D A  +F++M  KG + N V Y+ LI G   ++ +  A D++ +M ++ 
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDE 318

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P +            + R +EA+ L   M   GI P+    + L D
Sbjct: 319 CFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLID 366



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  L  ++   GL+P + T   +I         D A   F+++     KP++ T+T 
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I  +C+EGR+ DA  M +KM E G   ++ TYS LI GY        AFDV + M +  
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702

Query: 128 ISPN 131
             P+
Sbjct: 703 CEPS 706



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 12/136 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YNT++        +DE  Q++ ++   ++ PN  T+  +++ +CK G +++A    SK++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM----CENNISPN--------IAGRPT 137
           E G   +  TY+ LI GY + +++ SAF V+ EM    C  N            +A R  
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 138 EAMQLYDSMLRNGIMP 153
           EAM L+  M  +   P
Sbjct: 306 EAMDLFVKMKDDECFP 321



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 31/191 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   D A   F Q+   G +PD  TY T I  YC   RL +A  +  K+    + P+
Sbjct: 612 LLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPD 671

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK------- 114
             T++ LI  +   G+ + A  +  +M + G + +  T+  LI    + +  K       
Sbjct: 672 LFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPE 731

Query: 115 -----------SAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRN-G 150
                      +  ++ E+M E++++PN              G    A +++D M RN G
Sbjct: 732 LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791

Query: 151 IMPDGLLLSTL 161
           I P  L+ + L
Sbjct: 792 ISPSELVFNAL 802



 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 7   HLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           +L  A K+F  +  + G+ P  + +N ++   C L + +EA ++ + + CV   P   + 
Sbjct: 775 NLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESC 834

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            +LI    K+G  +  T +F  +L+ G   + + +  +IDG  K   +++ ++++  M +
Sbjct: 835 KVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEK 894

Query: 126 N 126
           N
Sbjct: 895 N 895



 Score = 37.0 bits (84), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A K+   +   G  P + +   +ICG       +    +F+ L       + + + I+
Sbjct: 813 NEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKII 872

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           ID   K+G ++    +F+ M + G K +  TYS LI+G
Sbjct: 873 IDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A++L G++  +GLE D++ Y+T+I G+CS   LD    LF+++    + PN
Sbjct: 55  LCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPN 114

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LI+ FCK+G   +AT +   M E+G + +V TY+C+I G  K    + A D+++
Sbjct: 115 VVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFD 174

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNG 150
            M E    P+              G   +A +++++ML  G
Sbjct: 175 LMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG 215



 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PDI++YNTII G C   RL++AV L  ++     +PNS T+ IL+D  CKEGR+++A  +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M  KG + +VV YS LI G+     +     +++EM E  ISPN+            
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G   EA  +  +M   GI PD
Sbjct: 128 KGLWREATAVLHTMTERGIQPD 149



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 14/154 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +   +T+RG++PD+ TY  +I G C   R  +A+ LF+ +T    +P+++T+ +LI+
Sbjct: 134 ATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLIN 193

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE--NNI 128
             CKEG + DA  +F  MLEKG +  VV+Y+ LI G   +  +  A  ++  + E  N +
Sbjct: 194 GLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYV 253

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNG 150
            P++             GR  +A+++YD+M+  G
Sbjct: 254 EPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 90/171 (52%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   +D A++L+ ++   GL P   TY+ +I G+C ++ L+ A  LF ++    L P  
Sbjct: 303 IKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTL 362

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  L+ + CKE  ++ A  +F +M E   + + ++++ +IDG  K+ ++ SA ++  +
Sbjct: 363 FDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLND 422

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M +  ++P+              G+  EA   +DSM+ +GI PD  +  +L
Sbjct: 423 MQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSL 473



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 49/205 (23%)

Query: 8   LDAALKLFGQLTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKL----------TC 55
           LD A+KLF  L + G  +EPD+IT+NT+I G C   RLD+AV++++ +          TC
Sbjct: 236 LDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTC 295

Query: 56  -------------------------VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
                                    + L P+S T++++ID FCK   ++ A  +FS+M  
Sbjct: 296 HILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKI 355

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTE 138
            G    +  Y+ L+    K  +++ A  +++EM E+N  P+             AG    
Sbjct: 356 SGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHS 415

Query: 139 AMQLYDSMLRNGIMPDGLLLSTLAD 163
           A +L + M + G+ PD    S+  +
Sbjct: 416 AKELLNDMQQMGLTPDAYTYSSFIN 440



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 14/176 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     AL LF  +T++G EP  +TYN +I G C    + +A ++FE +     +  
Sbjct: 160 LCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLE 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG--PKANVVTYSCLIDGYFKSQNMKSAFDV 119
            +++  LI   C  G++D+A  +FS +LE G   + +V+T++ +I G  K   +  A ++
Sbjct: 220 VVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEI 279

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           Y+ M E     N+            +G   +AM+L+  + + G++P     S + D
Sbjct: 280 YDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMID 335



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ A +LF ++ +   EPD I++N +I G      +  A +L   +  + L P+
Sbjct: 372 LCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPD 431

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T++  I+   K G+M++A   F  M+  G   +   Y  LI G+  +  ++   ++  
Sbjct: 432 AYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLR 491

Query: 122 EMCENNI 128
           +M +  +
Sbjct: 492 QMADMGV 498


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           LTD GL+PD++TY  +ICG+C +  ++EA++L   L     + N I +++L+ + CK G+
Sbjct: 282 LTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQ 341

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           +D+A  +  +M     + ++VTYS LI G  K   ++ A  +Y+EMC N I PN      
Sbjct: 342 VDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSG 401

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   G  ++A   +DS++ + + PD  L + + D
Sbjct: 402 ILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMID 439



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL+L  ++    L+PD++TY+ +I G C   ++ +A+QL++++   ++ PN
Sbjct: 336 LCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPN 395

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S   + ++   C++G + DA M F  ++    + +V  Y+ +IDGY K  +++ A  +Y+
Sbjct: 396 SFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYK 455

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + +  I+P+I              +  EA +L +S+  +G+ P  +  +TL
Sbjct: 456 RLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTL 507



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 97/180 (53%), Gaps = 18/180 (10%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   ++ A++L+ +L D+ + P I+T+N++I G+C   ++ EA +L E +    L+P++
Sbjct: 442 VKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSA 501

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+T L++A+C+EG ++    +  +M  K  +  VVTY+ +I G  K + ++ +  + E+
Sbjct: 502 VTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLED 561

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M    ++P+     T            +A +L D ML + + P      T A YN+   G
Sbjct: 562 MRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEP------TPATYNVLIDG 615



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A   F  L    L PD+  YN +I GY  L  ++EAV+L+++L    + P+ +TF  
Sbjct: 412 LSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNS 471

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FCK  ++ +A  +   +   G + + VTY+ L++ Y +  N+    ++  EM   +
Sbjct: 472 LIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKD 531

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I P +              +  E++QL + M   G+ PD +  +T+
Sbjct: 532 IEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTI 577



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ +++L   +  +GL PD ITYNTII  +C    + +A +L + +    L+P 
Sbjct: 546 LCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPT 605

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LID  C+ G ++DA  +   + ++      V Y+ +I  +    + + A  V+ 
Sbjct: 606 PATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFH 665

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           +M E     +I                 EA   +  ML +G+ PD
Sbjct: 666 QMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPD 710



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E +++   +L  ++  + +EP ++TY  +I G C   +L+E+VQL E +    L P+ I
Sbjct: 513 EEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQI 572

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I  FCK   M  A  +   ML    +    TY+ LIDG  +  +++ A  V   +
Sbjct: 573 TYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSL 632

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNG 150
            + NI+              + G    A++++  M+  G
Sbjct: 633 QDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKG 671



 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 59/127 (46%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H D    ++  + D G      T + I+ G C  +R  +AV    +    +  P+ ++F 
Sbjct: 130 HTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFN 189

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++  +CK G  D A   F  ML+ G   +  +Y+ LI G   + +M+ A ++  +M + 
Sbjct: 190 TIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQ 249

Query: 127 NISPNIA 133
            + P++ 
Sbjct: 250 GLQPDMV 256



 Score = 40.4 bits (93), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/118 (18%), Positives = 56/118 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++   L DR +    + Y T+I  +C       AV++F ++     + +   ++ 
Sbjct: 622 VEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSA 681

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +I+  CK   +++A   F  ML  G   +   +  +++ + ++ ++ S F++   M +
Sbjct: 682 VINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIK 739



 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+K+F Q+ ++G E  I  Y+ +I   C    ++EA   F  +    + P+   F ++++
Sbjct: 660 AVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLN 719

Query: 71  AFCKEGRMDDATMMFSKMLEKG 92
           AF + G +     + + M++ G
Sbjct: 720 AFHRAGHVHSVFELLAVMIKFG 741


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 96/167 (57%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+ + G  PD+ITY T+I G+C    +DEAV L + +T    KPN+I++TI
Sbjct: 420 VDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 479

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C   R  DA  + S+M+++G   N +T++ LI+   K   ++ A ++ ++M  N 
Sbjct: 480 VLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 539

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  G+ P+ ++ S++A
Sbjct: 540 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 586



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HL+ A ++  ++   GL+P+++ YNT++ G CS  R +E  +L  ++       + +
Sbjct: 346 KEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDV 405

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FC+ G +D    +  +MLE G   +V+TY+ +I+G+ K   +  A  + + M
Sbjct: 406 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 465

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN             A R  +A  L   M++ G   + +  +TL ++
Sbjct: 466 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINF 518



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 64/125 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL L   L   G EPD+++YN ++ G C   R     +L E++  +   PN +TF  
Sbjct: 245 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 304

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G  +    + ++M+E G   ++  Y+ +IDG  K  +++ A ++   M    
Sbjct: 305 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 364

Query: 128 ISPNI 132
           + PN+
Sbjct: 365 LKPNV 369



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + DEA++L   +    + PN
Sbjct: 519 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 578

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  +EGR++    MF  + +   +++ V Y+ +I    K    + A +   
Sbjct: 579 TIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLA 638

Query: 122 EMCENNISPN 131
            M  +   PN
Sbjct: 639 YMVSSGCVPN 648



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 60/116 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL+L   + ++G+ P+ I Y++I        R+++ +Q+F+ +    ++ +++ +  +
Sbjct: 561 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 620

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           I + CK G  + A    + M+  G   N  TY+ LI G      +K A ++  E+C
Sbjct: 621 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELC 676



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YN ++ GYC   +L+ A +L      V + PN+ T+  ++ A C  GR+ DA  +  +M 
Sbjct: 130 YNAMVAGYCRAGQLESARRL---AAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +G       Y  +++   +    +SA  V E++
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDL 220



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++  +++F  + D  +  D + YN +I   C     + A++    +      PN
Sbjct: 589 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 648

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+TILI     EG + +A  M +++  KG
Sbjct: 649 ESTYTILIRGLASEGFVKEAQEMLTELCSKG 679



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 56/123 (45%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A+++   L  RG   D+   N ++   C    +DEA+ L   L     +P+ +++  ++
Sbjct: 212 SAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVL 271

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C   R      +  +M+      N+VT++ LI    ++   +   +V  +M E+  +
Sbjct: 272 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCT 331

Query: 130 PNI 132
           P+I
Sbjct: 332 PDI 334


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ PDI TYN++I   C+L        L  ++   ++ P+
Sbjct: 211 LCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPD 270

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  ++DA CKEG++ +A  +  KM+++G + NVVTY+ L+DG+     M  A  V++
Sbjct: 271 VVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFD 330

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      PN+              R  +AM L+  M R  ++PD +  STL
Sbjct: 331 TMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTL 382



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 88/159 (55%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +G  P++I+YNT+I GYC + R+D+A+ LF ++   +L P+++T++ 
Sbjct: 322 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 381

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C   R+ DA  +F +M+      N+VTY  L+D   K++ +  A  + + +  +N
Sbjct: 382 LIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSN 441

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + P+I            AG    A  L+ ++   G+ PD
Sbjct: 442 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 480



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 76/132 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +  ++  RG+EP+++TY  ++ G+C L+ +DEAV++F+ + C    PN
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPN 340

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++  LI+ +CK  R+D A  +F +M  +    + VTYS LI G    + ++ A  ++ 
Sbjct: 341 VISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFH 400

Query: 122 EMCENNISPNIA 133
           EM   +  PN+ 
Sbjct: 401 EMVACSQIPNLV 412



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+ P+I T + +I  +C LNR+  A  +  K+  +  +P++ TFT
Sbjct: 76  HHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFT 135

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI     EG++ +A  +F KM+ +G + +VVTY  LI+G  K  N  +A  +   M + 
Sbjct: 136 TLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK 195

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
           N  PN+              + TEA  L+  M+  GI PD
Sbjct: 196 NCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPD 235



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++   G  PD++TY T+I G C +     A++L   +     +PN   
Sbjct: 144 EGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFA 203

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +ID+ CK+ ++ +A  +FS+M+ KG   ++ TY+ LI         K    +  EM 
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV 263

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ I P++             G+ TEA  + D M++ G+ P+ +  + L D
Sbjct: 264 DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMD 314



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  +  ++   G +PD  T+ T+I G     ++ EA+ LF+K+     +P+ 
Sbjct: 107 CHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDV 166

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G    A  +   M++K  + NV  Y+ +ID   K + +  AF+++ E
Sbjct: 167 VTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSE 226

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + IMPD +  +T+ D
Sbjct: 227 MVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 279



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LFG++  + L PD +TY+T+I G C + RL +A+ LF ++      PN +T+ I
Sbjct: 357 IDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRI 416

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK   + +A  +   +       ++   +  IDG  ++  +++A D++  +    
Sbjct: 417 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 476

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + P++             G   EA +L+  M  NG   +G + +T+ 
Sbjct: 477 LQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 523



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L  A+ L   +    L+PDI   N  I G C    L+ A  LF  L+   L+P+
Sbjct: 421 LCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 480

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I+I+  C+ G +D+A+ +F +M E G   N   Y+ +  G+ ++     A  + +
Sbjct: 481 VWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQ 540

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM     S +        M L+  ML +    DGL
Sbjct: 541 EMVARGFSAD-----ASTMTLFVKMLSD----DGL 566


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+ A K+  Q+   G+ P++ITYNT+I G+C + +L +A+ L   L    L P+
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ IL+  FC++G    A  M  +M E+G K + VTY+ LID + +S NM+ A  +  
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M E  + P+            I G+  EA +L+ SM+     P+ ++ +T+
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A K+  ++ +RG++P  +TY  +I  +   + +++A+QL   +  + L P+  T+++LI
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC +G+M++A+ +F  M+EK  + N V Y+ +I GY K  +   A  + +EM E  ++
Sbjct: 451 HGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELA 510

Query: 130 PNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           PN+A             +  EA +L + M+ +GI P   +LS ++
Sbjct: 511 PNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLIS 555



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 16/179 (8%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LIK C     ++ +  L  +LT+ G  P+++ Y T+I G C    +++A  LF ++  +
Sbjct: 168 ILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKL 227

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  N  T+T+LI+   K G       M+ KM E G   N+ TY+C+++   K    K A
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDA 287

Query: 117 FDVYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           F V++EM E  +S NI    T            EA ++ D M  +GI P+ +  +TL D
Sbjct: 288 FQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLID 346



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A ++F ++ +RG+  +I+TYNT+I G C   +L+EA ++ +++    + PN
Sbjct: 278 LCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPN 337

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LID FC  G++  A  +   +  +G   ++VTY+ L+ G+ +  +   A  + +
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVK 397

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM E  I P+             +    +A+QL  SM   G++PD
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPD 442



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 12/148 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D+ ++  +I G C    ++++  L  +LT     PN + +T LID  CK+G ++ A  +F
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            +M + G  AN  TY+ LI+G FK+   K  F++YE+M E+ + PN+             
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           GR  +A Q++D M   G+  + +  +TL
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTL 309



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 71/127 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A++L   + + GL PD+ TY+ +I G+C   +++EA +LF+ +     +PN + + 
Sbjct: 423 NMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYN 482

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  +CKEG    A  +  +M EK    NV +Y  +I+   K +  K A  + E+M ++
Sbjct: 483 TMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDS 542

Query: 127 NISPNIA 133
            I P+ +
Sbjct: 543 GIDPSTS 549



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
             +++ ++ + G+ P++ TYN ++   C   R  +A Q+F+++    +  N +T+  LI 
Sbjct: 252 GFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIG 311

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+E ++++A  +  +M   G   N++TY+ LIDG+     +  A  +  ++    +SP
Sbjct: 312 GLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP 371

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G  + A ++   M   GI P  +  + L D
Sbjct: 372 SLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L+ Q+   G+  +  T N +I  +C LNRL  A  +   +  +  +P++ TFT
Sbjct: 25  HYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFT 84

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F KM  +G + +V+TY  LI+G  K + +  A  ++ +M   
Sbjct: 85  TLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAK 144

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN            I G   EA++L+ +M+   IMPD L  +TL D
Sbjct: 145 GISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVD 193



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 15/175 (8%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL+LF ++T  G +PD++TY T+I G C   +L EA+ LF  +    + PN+ T
Sbjct: 93  EGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFT 152

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS---QNMKSAFDVYE 121
           ++ LI   C  G   +A  +F  M+ +    + +T++ L+D   K    Q M  A  ++E
Sbjct: 153 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFE 212

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM +  + P+              GR  +A+ L+  M+  G +PD +    L DY
Sbjct: 213 EMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDY 267



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 83/150 (55%), Gaps = 9/150 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF +++ +GL PD +TYNT+I G C + RL +A+ LF ++      P+ +T+ I
Sbjct: 204 MDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRI 263

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L D  CK  R+ +A ++   +       ++  YS ++DG  ++  +++A D++ ++    
Sbjct: 264 LFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKG 323

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
           + P++        + Y  M+ NG+   GLL
Sbjct: 324 LHPDV--------RTYTIMI-NGLCQQGLL 344



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCS---LNRLDEAVQLFEKLTCVQLKPNSI 63
           H   A++LF  +  R + PD +T+NT++   C    +  +D+A+ LFE+++   L P+++
Sbjct: 165 HWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTV 224

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   C  GR+ DA  +F +M+  G   ++VTY  L D   K+  +  A  + + +
Sbjct: 225 TYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVI 284

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              N+ P+I            AG    A  L+  +   G+ PD
Sbjct: 285 EGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPD 327



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 3/126 (2%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++   G  PD++TY  +    C  +RL EA+ L + +    L P+ 
Sbjct: 234 CHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDI 293

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             ++I++D  C+ G ++ A  +FSK+  KG   +V TY+ +I+G  +   +  A  ++ E
Sbjct: 294 HIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGE 353

Query: 123 MCENNI 128
           M EN+I
Sbjct: 354 MDENDI 359



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ L   +    L+PDI  Y+ ++ G C    L+ A  LF KL+   L P+
Sbjct: 268 LCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPD 327

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
             T+TI+I+  C++G + +A+ +F +M E     ++ +YS      FK 
Sbjct: 328 VRTYTIMINGLCQQGLLAEASKLFGEMDEN----DIESYSTFSRNAFKG 372


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++PDI TY+++I G+C  +RLDEA  +FE +      PN
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R+++   +F +M ++G   N VTY+ LI G F++ +   A  +++
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M  + + P+I             G+  +A+ +++ + ++ + PD
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499



 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL L  ++    +E D++ YNTII G C    +D+A  LF K+    ++P+
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPD 289

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   C  GR  DA+ + S M+E+    NVVT+S LID + K   +  A  +Y+
Sbjct: 290 VFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I P+I              R  EA  +++ M+     P+ +  +TL
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D A  LF ++  +G+ PD+ TYN++I   C+  R  +A +L   +   ++ PN
Sbjct: 265 LCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPN 324

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            +TF+ LIDAF KEG                                   R+D+A  MF 
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 384

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ K    NVVTY+ LI G+ K++ ++   +++ EM +  +  N             AG
Sbjct: 385 LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 444

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A +++  M+ +G+ PD +  S L D
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLD 473



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  Q+  RG +PD++TY  ++ G C    +D A+ L +K+   +++ + + +  +ID
Sbjct: 204 AVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIID 263

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   +DDA  +F+KM  KG + +V TY+ LI           A  +   M E  I+P
Sbjct: 264 GLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINP 323

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G+  EA +LYD M++  I PD    S+L
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 91/173 (52%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G +PD +T+NT+I G    N+  EAV L +++     +P+ 
Sbjct: 161 CHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 220

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +++  CK G +D A  +  KM +   +A+VV Y+ +IDG  K +++  AF ++ +
Sbjct: 221 VTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNK 280

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P++             GR ++A +L  +M+   I P+ +  S L D
Sbjct: 281 METKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALID 333



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 74/123 (60%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F ++   G+ PDIITY+ ++ G C   +L++A+ +FE L   +++P+  T+ I+
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG K NV+ Y+ +I G+ +    + A  ++ EM E+  
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 129 SPN 131
            P+
Sbjct: 567 LPD 569



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  ++LF +++ RGL  + +TYNT+I G       D A ++F+K+    + P+ I
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  CK G+++ A ++F  + +   + ++ TY+ +I+G  K+  ++  +D++  +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+             G   EA  L+  M  +G +PD    +TL    L+
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLR 582



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 93/185 (50%), Gaps = 16/185 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  AL + G++   G EPDI+T ++++ GYC   R+ +AV L +++  +  KP+++
Sbjct: 127 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTV 186

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI       +  +A  +  +M+++G + ++VTY  +++G  K  ++  A  + ++M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKM 246

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQ 167
            +  I  ++    T            +A  L++ M   GI PD      L+S L +Y   
Sbjct: 247 EKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRW 306

Query: 168 SSGSQ 172
           S  S+
Sbjct: 307 SDASR 311



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 82/159 (51%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ LFG++      P I+ +N ++     + + D  + L E++  +++  +  ++ I
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC+  ++  A  +  KM++ G + ++VT S L++GY  S+ +  A  + ++M E  
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
             P+            +  + +EA+ L D M++ G  PD
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPD 219



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL +F  L    +EPDI TYN +I G C   ++++   LF  L+   +KPN
Sbjct: 475 LCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T +I  FC++G  ++A  +F +M E G   +   Y+ LI    +  +  ++ ++ +
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIK 594

Query: 122 EM 123
           EM
Sbjct: 595 EM 596



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  ++ +  +  D+ +YN +I  +C  ++L  A+ +  K+  +  +P+ +T + 
Sbjct: 96  FDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSS 155

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ +C   R+ DA  +  +M+E G K + VT++ LI G F       A  + ++M +  
Sbjct: 156 LLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRG 215

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G    A+ L   M +  I  D ++ +T+ D
Sbjct: 216 CQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIID 263



 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++    LF  L+ +G++P++I Y T+I G+C     +EA  LF ++      P+S 
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSG 571

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            +  LI A  ++G    +  +  +M   G   +  T S +I+
Sbjct: 572 CYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 14/172 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PD  TYN +I  +    ++DEA+++FE+L     KP++ ++  LI+   
Sbjct: 475 LYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLG 534

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A M F +M EKG   +VVTYS LI+ + K+  ++ A  +++EM      PNI 
Sbjct: 535 KNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIV 594

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      +GR  EA+ LY  + + G++PD +  S LA   LQS   ++
Sbjct: 595 TYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSITYSVLA--RLQSGSHRK 644



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 90/178 (50%), Gaps = 13/178 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L G++ ++G+  D + YNT+      L ++     L+EK+      P++ T+ ILI 
Sbjct: 437 AIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILIS 496

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +F + G++D+A  +F ++ +   K +  +Y+ LI+   K+ ++  A   ++EMCE  ++P
Sbjct: 497 SFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNP 556

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           ++    T             A +L+D ML  G  P+ +  + L D  L+ SG     +
Sbjct: 557 DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLD-CLERSGRTAEAV 613



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 63/102 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A   F ++ ++GL PD++TY+T+I  +   ++++ A +LF+++      PN
Sbjct: 533 LGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPN 592

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + GR  +A  +++K+ ++G   + +TYS L
Sbjct: 593 IVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSITYSVL 634



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 56/103 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+  +D A K+F  +  +  EPD  TY  +I     + + DE+++LFE++      PN
Sbjct: 256 LVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPN 315

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            I +  +I A      +D A ++F KM+EK  + +  TYS ++
Sbjct: 316 VIAYNTMIQALANARMVDKAILLFLKMVEKECRPSEFTYSVIL 358



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 62/123 (50%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +    ++ ++  +G   DI  +N ++      + +D A ++FE +     +P+  T+TI+
Sbjct: 228 EKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIM 287

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    K G+ D++  +F +ML KG   NV+ Y+ +I     ++ +  A  ++ +M E   
Sbjct: 288 IRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKMVEKEC 347

Query: 129 SPN 131
            P+
Sbjct: 348 RPS 350



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 21/168 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D +L+LF ++ ++G  P++I YNT+I    +   +D+A+ LF K+   + +P+  T++++
Sbjct: 298 DESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKMVEKECRPSEFTYSVI 357

Query: 69  IDAFCKE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-- 123
           +     E    ++D+   +  K + +        Y+ L+    K  +   A  ++  M  
Sbjct: 358 LHLLATERKLHKLDEVVEVSKKYMSRS------IYAYLVRTLKKLGHASEAHRLFCNMWN 411

Query: 124 CENNISPNI----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           C      +           AG+ TEA+ L   +   G+  D ++ +T+
Sbjct: 412 CHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTV 459



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
           CS  +  EA+ L  K+    +  +++ +  +  A  K  ++     ++ KM + GP  + 
Sbjct: 429 CSAGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDT 488

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDS 145
            TY+ LI  + ++  +  A  ++EE+ +++  P+              G   EA   +  
Sbjct: 489 FTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKE 548

Query: 146 MLRNGIMPDGLLLSTLAD 163
           M   G+ PD +  STL +
Sbjct: 549 MCEKGLNPDVVTYSTLIE 566



 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 51/120 (42%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K  G +   GL     TY  ++  Y      ++   ++ ++       +   F +L+DA 
Sbjct: 197 KCIGLIKKWGLRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDAL 256

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K+  +D A  +F  M  K  + +  TY+ +I    K      + +++EEM     SPN+
Sbjct: 257 VKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNV 316



 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 44/191 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCS---LNRLDEAVQLFEKL----------- 53
           +D A+ LF ++ ++   P   TY+ I+    +   L++LDE V++ +K            
Sbjct: 332 VDKAILLFLKMVEKECRPSEFTYSVILHLLATERKLHKLDEVVEVSKKYMSRSIYAYLVR 391

Query: 54  TCVQLKPNSITFTI------------------LIDAFCKEGRMDDATMMFSKMLEKGPKA 95
           T  +L   S    +                  +++  C  G+  +A  +  K+ EKG   
Sbjct: 392 TLKKLGHASEAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSV 451

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           + V Y+ +     K + +    D+YE+M ++   P+             AG+  EA++++
Sbjct: 452 DTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIF 511

Query: 144 DSMLRNGIMPD 154
           + +  +   PD
Sbjct: 512 EELEDSDYKPD 522


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++PDI TY+++I G+C  +RLDEA  +FE +      PN
Sbjct: 319 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 378

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R+++   +F +M ++G   N VTY+ LI G F++ +   A  +++
Sbjct: 379 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 438

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M  + + P+I             G+  +A+ +++ + ++ + PD
Sbjct: 439 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 483



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL L  ++    +E D++ Y TII   C+   +++A+ LF ++    ++PN
Sbjct: 214 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 273

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   C  GR  DA+ + S M+E+    NVVT+S LID + K   +  A  +Y+
Sbjct: 274 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 333

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I P+I              R  EA  +++ M+     P+ +  +TL
Sbjct: 334 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  RG +PD+ TY T++ G C    +D A+ L +K+   +++ + + +T +ID
Sbjct: 188 AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIID 247

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C    ++DA  +F++M  KG + NVVTY+ LI           A  +  +M E  I+P
Sbjct: 248 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 307

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G+  EA +LYD M++  I PD    S+L
Sbjct: 308 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 350



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 47/204 (23%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ AL LF ++ ++G+ P+++TYN++I   C+  R  +A +L   +   ++ PN +TF+
Sbjct: 254 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 313

Query: 67  ILIDAFCKEG-----------------------------------RMDDATMMFSKMLEK 91
            LIDAF KEG                                   R+D+A  MF  M+ K
Sbjct: 314 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 373

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
               NVVTY+ LI G+ K++ ++   +++ EM +  +  N             AG    A
Sbjct: 374 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 433

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
            +++  M+ +G+ PD +  S L D
Sbjct: 434 QKIFKKMVSDGVPPDIITYSILLD 457



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F ++   G+ PDIITY+ ++ G C   +L++A+ +FE L   +++P+  T+ I+
Sbjct: 431 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 490

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG K NV+ Y+ +I G+ +    + A  ++ EM E+  
Sbjct: 491 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 550

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            PN     T    L  + LR+G
Sbjct: 551 LPNSGTYNT----LIRARLRDG 568



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  AL + G++   G EPDI+T ++++ GYC   R+ EAV L +++  ++ +PN++
Sbjct: 111 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 170

Query: 64  TFTILI-----------------------------------DAFCKEGRMDDATMMFSKM 88
           TF  LI                                   +  CK G +D A  +  KM
Sbjct: 171 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 230

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
            +   +A+VV Y+ +ID     +N+  A +++ EM    I PN+             GR 
Sbjct: 231 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 290

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++A +L   M+   I P+ +  S L D
Sbjct: 291 SDASRLLSDMIERKINPNVVTFSALID 317



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  ++LF +++ RGL  + +TYNT+I G       D A ++F+K+    + P+ I
Sbjct: 391 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 450

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  CK G+++ A ++F  + +   + ++ TY+ +I+G  K+  ++  +D++  +
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+             G   EA  L+  M  +G +P+    +TL    L+
Sbjct: 511 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 566



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL +F  L    +EPDI TYN +I G C   ++++   LF  L+   +KPN
Sbjct: 459 LCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 518

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T +I  FC++G  ++A  +F +M E G   N  TY+ LI    +  +  ++ ++ +
Sbjct: 519 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 578

Query: 122 EM 123
           EM
Sbjct: 579 EM 580



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +  LD A+ LFG++      P I+ +N ++     +N+ D  + L E++  +++  +  +
Sbjct: 42  DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 101

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           + ILI+ FC+  ++  A  +  KM++ G + ++VT S L++GY   + +  A  + ++M 
Sbjct: 102 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 161

Query: 125 ENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                PN            +  + +EA+ L D M+  G  PD     T+ +
Sbjct: 162 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 212



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++    LF  L+ +G++P++I Y T+I G+C     +EA  LF ++      PNS 
Sbjct: 496 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSG 555

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+  LI A  ++G    +  +  +M   G   +  T S +I+
Sbjct: 556 TYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 597


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A KL+ ++  R ++PDI TY+++I G+C  +RLDEA  +FE +      PN
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R+++   +F +M ++G   N VTY+ LI G F++ +   A  +++
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M  + + P+I             G+  +A+ +++ + ++ + PD
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL L  ++    +E D++ Y TII   C+   +++A+ LF ++    ++PN
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   C  GR  DA+ + S M+E+    NVVT+S LID + K   +  A  +Y+
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I P+I              R  EA  +++ M+     P+ +  +TL
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  RG +PD+ TY T++ G C    +D A+ L +K+   +++ + + +T +ID
Sbjct: 204 AVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIID 263

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C    ++DA  +F++M  KG + NVVTY+ LI           A  +  +M E  I+P
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 323

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G+  EA +LYD M++  I PD    S+L
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 47/204 (23%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ AL LF ++ ++G+ P+++TYN++I   C+  R  +A +L   +   ++ PN +TF+
Sbjct: 270 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 329

Query: 67  ILIDAFCKEG-----------------------------------RMDDATMMFSKMLEK 91
            LIDAF KEG                                   R+D+A  MF  M+ K
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
               NVVTY+ LI G+ K++ ++   +++ EM +  +  N             AG    A
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
            +++  M+ +G+ PD +  S L D
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLD 473



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 81/142 (57%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F ++   G+ PDIITY+ ++ G C   +L++A+ +FE L   +++P+  T+ I+
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG K NV+ Y+ +I G+ +    + A  ++ EM E+  
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            PN     T    L  + LR+G
Sbjct: 567 LPNSGTYNT----LIRARLRDG 584



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  AL + G++   G EPDI+T ++++ GYC   R+ EAV L +++  ++ +PN++
Sbjct: 127 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 186

Query: 64  TFTILI-----------------------------------DAFCKEGRMDDATMMFSKM 88
           TF  LI                                   +  CK G +D A  +  KM
Sbjct: 187 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
            +   +A+VV Y+ +ID     +N+  A +++ EM    I PN+             GR 
Sbjct: 247 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 306

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++A +L   M+   I P+ +  S L D
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALID 333



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  ++LF +++ RGL  + +TYNT+I G       D A ++F+K+    + P+ I
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  CK G+++ A ++F  + +   + ++ TY+ +I+G  K+  ++  +D++  +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+             G   EA  L+  M  +G +P+    +TL    L+
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL +F  L    +EPDI TYN +I G C   ++++   LF  L+   +KPN
Sbjct: 475 LCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T +I  FC++G  ++A  +F +M E G   N  TY+ LI    +  +  ++ ++ +
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 594

Query: 122 EM 123
           EM
Sbjct: 595 EM 596



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +  LD A+ LFG++      P I+ +N ++     +N+ D  + L E++  +++  +  +
Sbjct: 58  DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           + ILI+ FC+  ++  A  +  KM++ G + ++VT S L++GY   + +  A  + ++M 
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177

Query: 125 ENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                PN            +  + +EA+ L D M+  G  PD     T+ +
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 228



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++    LF  L+ +G++P++I Y T+I G+C     +EA  LF ++      PNS 
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSG 571

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+  LI A  ++G    +  +  +M   G   +  T S +I+
Sbjct: 572 TYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 95/161 (59%), Gaps = 12/161 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE  L  A +L+ ++  RG+ PD ITYN++I G+C  N L EA Q+F+ +     +P
Sbjct: 353 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 412

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T++ILI+++CK  R+DD   +F ++  KG   N +TY+ L+ G+ +S  + +A +++
Sbjct: 413 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 472

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRN 149
           +EM    + P++             G   +A+++++ M ++
Sbjct: 473 QEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS 513



 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 97/179 (54%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A ++F  +  +G EPDI+TY+ +I  YC   R+D+ ++LF +++   L PN+I
Sbjct: 391 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 450

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+  FC+ G+++ A  +F +M+ +G   +VVTY  L+DG   +  +  A +++E+M
Sbjct: 451 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 510

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            ++ ++  I            A +  +A  L+ S+   G+ PD      +  YN+   G
Sbjct: 511 QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD------VVTYNVMIGG 563



 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 96/173 (55%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   D AL LF ++  +G++ D++TY+++I G C+  + D+  ++  ++    + P+
Sbjct: 284 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 343

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LID F KEG++ +A  ++++M+ +G   + +TY+ LIDG+ K   +  A  +++
Sbjct: 344 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 403

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            M      P+I            A R  + M+L+  +   G++P+ +  +TL 
Sbjct: 404 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL L  ++ + G +PD +TY  ++   C       A+ LF K+    +K + + ++
Sbjct: 219 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYS 278

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+ID+ CK+G  DDA  +F++M  KG KA+VVTYS LI G            +  EM   
Sbjct: 279 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 338

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI P++             G+  EA +LY+ M+  GI PD +  ++L D
Sbjct: 339 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 387



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  + G+    G EPD IT++T++ G+C   R+ EAV L +++  ++ +P+ +T + LI+
Sbjct: 153 AFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLIN 212

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C +GR+ +A ++  +M+E G + + VTY  +++   KS N   A D++ +M E NI  
Sbjct: 213 GLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA 272

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G   +A+ L++ M   GI  D +  S+L
Sbjct: 273 SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 315



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL LF ++ +R ++  ++ Y+ +I   C     D+A+ LF ++    +K + +T++ LI 
Sbjct: 258 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 317

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C +G+ DD   M  +M+ +    +VVT+S LID + K   +  A ++Y EM    I+P
Sbjct: 318 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 377

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           +     +            EA Q++D M+  G  PD +  S L
Sbjct: 378 DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 420



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 73/124 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA +LF ++  RG+ P ++TY  ++ G C    L++A+++FEK+   ++      + I
Sbjct: 465 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 524

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   ++DDA  +F  + +KG K +VVTY+ +I G  K  ++  A  ++ +M E+ 
Sbjct: 525 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 584

Query: 128 ISPN 131
            +P+
Sbjct: 585 CTPD 588



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 67/117 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ AL++F ++    +   I  YN II G C+ +++D+A  LF  L+   +KP+ +T+ 
Sbjct: 499 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 558

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++I   CK+G + +A M+F KM E G   +  TY+ LI  +     + S+ ++ EEM
Sbjct: 559 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 615



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 23/133 (17%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+E D+ T   +I  YC   +L  A  +  +   +  +P++ITF+ L++ FC EGR+ +A
Sbjct: 129 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 188

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQ 141
             +  +M+E   + ++VT S LI+G                +C       + GR +EA+ 
Sbjct: 189 VALVDRMVEMKQRPDLVTVSTLING----------------LC-------LKGRVSEALV 225

Query: 142 LYDSMLRNGIMPD 154
           L D M+  G  PD
Sbjct: 226 LIDRMVEYGFQPD 238



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  LF  L+D+G++PD++TYN +I G C    L EA  LF K+      P+  T+ I
Sbjct: 535 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 594

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           LI A      +  +  +  +M   G  A+  T   +ID
Sbjct: 595 LIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 632


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 82/132 (62%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE  L  A +L+ ++  RG+ P+IITYNT++ GYC  NRL EA  + + +   +  P
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TFT LI  +C   R+DD   +F  + ++G  AN VTYS L+ G+ +S  +K A +++
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 121 EEMCENNISPNI 132
           +EM  + + P++
Sbjct: 427 QEMVSHGVLPDV 438



 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 98/179 (54%), Gaps = 12/179 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +DAA+ LF ++  +G++  ++TYN+++ G C   + ++   L + +   ++ PN
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF +L+D F KEG++ +A  ++ +M+ +G   N++TY+ L+DGY     +  A ++ +
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            M  N  SP+I              R  + M+++ ++ + G++ + +  S L     QS
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 95/183 (51%), Gaps = 13/183 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  A+ L  ++ + G +PD++TYN+I+ G C       A  +  K+    +K +  T
Sbjct: 171 EGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFT 230

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ +ID+ C++G +D A  +F +M  KG K++VVTY+ L+ G  K+        + ++M 
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQSSGS 171
              I PN+             G+  EA +LY  M+  GI P+ +  +TL D Y +Q+  S
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLS 350

Query: 172 QEH 174
           + +
Sbjct: 351 EAN 353



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +  ++ +R ++ D+ TY+TII   C    +D A+ LF+++    +K + +T+  L+ 
Sbjct: 212 AFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+ +D  ++   M+ +    NV+T++ L+D + K   ++ A ++Y+EM    ISP
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI              R +EA  + D M+RN   PD +  ++L
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 374



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 67/117 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ AL++F  L    ++  I+ Y TII G C   ++++A  LF  L C  +KPN +T+T
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++I   CK+G + +A ++  KM E G   N  TY+ LI  + +  ++ ++  + EEM
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEM 569



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 12/180 (6%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C    A  + G++   G EPD  T+NT+I G C   ++ +AV L +++     +P+ +T+
Sbjct: 137 CKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTY 196

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +++  C+ G    A  M  KM E+  KA+V TYS +ID   +   + +A  +++EM  
Sbjct: 197 NSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 256

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             I  ++            AG+  +   L   M+   I+P+ +  + L D  ++    QE
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 316



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 72/121 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++   G+ PD++TY  ++ G C   +L++A+++FE L   ++    + +T +I+
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIE 481

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+++DA  +F  +  KG K NV+TY+ +I G  K  ++  A  +  +M E+  +P
Sbjct: 482 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAP 541

Query: 131 N 131
           N
Sbjct: 542 N 542



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D  +K+F  ++ RGL  + +TY+ ++ G+C   ++  A +LF+++    + P+ +T+ 
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+D  C  G+++ A  +F  + +      +V Y+ +I+G  K   ++ A++++  +   
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            + PN+             G  +EA  L   M  +G  P+    +TL   +L+
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             +  L    QL   G+  +I T N +I  +C   +   A  +  K+  +  +P++ TF 
Sbjct: 103 QFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFN 162

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  C EG++  A ++  +M+E G + ++VTY+ +++G  +S +   AFD+  +M E 
Sbjct: 163 TLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEER 222

Query: 127 NISPNIAGRPTEAMQLYDSMLRNG 150
           N+  ++    T    + DS+ R+G
Sbjct: 223 NVKADVFTYST----IIDSLCRDG 242



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 54/116 (46%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A  LF  L  +G++P+++TY  +I G C    L EA  L  K+      PN  
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           T+  LI A  ++G +  +  +  +M   G  A+  +   +ID     +  KS  D+
Sbjct: 545 TYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKSFLDM 600


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 82/132 (62%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE  L  A +L+ ++  RG+ P+IITYNT++ GYC  NRL EA  + + +   +  P
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TFT LI  +C   R+DD   +F  + ++G  AN VTYS L+ G+ +S  +K A +++
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 121 EEMCENNISPNI 132
           +EM  + + P++
Sbjct: 427 QEMVSHGVLPDV 438



 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 95/173 (54%), Gaps = 12/173 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA+ LF ++  +G++  ++TYN+++ G C   + ++   L + +   ++ PN ITF +
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D F KEG++ +A  ++ +M+ +G   N++TY+ L+DGY     +  A ++ + M  N 
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            SP+I              R  + M+++ ++ + G++ + +  S L     QS
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 13/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A+ L  ++ + G +PD++TYN+I+ G C       A+ L  K+    +K +
Sbjct: 168 LFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKAD 227

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ +ID+ C++G +D A  +F +M  KG K++VVTY+ L+ G  K+        + +
Sbjct: 228 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           +M    I PN+             G+  EA +LY  M+  GI P+ +  +TL D Y +Q+
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347

Query: 169 SGSQEH 174
             S+ +
Sbjct: 348 RLSEAN 353



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++ +R ++ D+ TY+TII   C    +D A+ LF+++    +K + +T+  L+ 
Sbjct: 212 ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+ +D  ++   M+ +    NV+T++ L+D + K   ++ A ++Y+EM    ISP
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI              R +EA  + D M+RN   PD +  ++L
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSL 374



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 67/117 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ AL++F  L    ++  I+ Y TII G C   ++++A  LF  L C  +KPN +T+T
Sbjct: 453 KLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT 512

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++I   CK+G + +A ++  KM E G   N  TY+ LI  + +  ++ ++  + EEM
Sbjct: 513 VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEM 569



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 72/121 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++   G+ PD++TY  ++ G C   +L++A+++FE L   ++    + +T +I+
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIE 481

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+++DA  +F  +  KG K NV+TY+ +I G  K  ++  A  +  +M E+  +P
Sbjct: 482 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAP 541

Query: 131 N 131
           N
Sbjct: 542 N 542



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D  +K+F  ++ RGL  + +TY+ ++ G+C   ++  A +LF+++    + P+ +T+ 
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+D  C  G+++ A  +F  + +      +V Y+ +I+G  K   ++ A++++  +   
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 502

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            + PN+             G  +EA  L   M  +G  P+    +TL   +L+
Sbjct: 503 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             +  L    QL   G+  +I T N +I  +C   +   A  +  K+  +  +P++ TF 
Sbjct: 103 QFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFN 162

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI     EG++ +A ++  +M+E G + +VVTY+ +++G  +S +   A D+  +M E 
Sbjct: 163 TLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEER 222

Query: 127 NISPNIAGRPTEAMQLYDSMLRNG 150
           N+  ++    T    + DS+ R+G
Sbjct: 223 NVKADVFTYST----IIDSLCRDG 242



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 54/116 (46%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A  LF  L  +G++P+++TY  +I G C    L EA  L  K+      PN  
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           T+  LI A  ++G +  +  +  +M   G  A+  +   +ID     +  KS  D+
Sbjct: 545 TYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKSFLDM 600


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KL   +  +G  P+ +TYNT+I G C   +LD+A+ L EK+   +  PN
Sbjct: 278 LSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPN 337

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I+   K+ R +D   +   M E+G KAN   YS LI G FK    ++A  +++
Sbjct: 338 QVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWK 397

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM E    PN+              +P EA  +   ML  G +P+    S+L     +  
Sbjct: 398 EMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKG 457

Query: 170 GSQE 173
            SQ+
Sbjct: 458 DSQK 461



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   +  + +   + +RG + +   Y+++I G     + + AV+L++++     KPN
Sbjct: 348 LVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPN 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +   ID  C++ + D+A  +  +ML KG   N  TYS L+ G+FK  + + A  V++
Sbjct: 408 VVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWK 467

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   ++  N+            +GR  EA+ ++  ML  G+ PD +  S++
Sbjct: 468 EMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 519



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+  F ++  +   PD+ TY+T++ G C   R+DEAV L +++      PN
Sbjct: 208 LCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +LIDA  K G +  A  +   M  KG   N VTY+ LI G      +  A  + E
Sbjct: 268 PVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLE 327

Query: 122 EMCENNISPN 131
           +M  +   PN
Sbjct: 328 KMVSSKCVPN 337



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 15/178 (8%)

Query: 1   MLIKECHLDAALKLFGQL---TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           ++I+E     A K +  +     +G +P+++TYN II   C L ++D AV  F ++    
Sbjct: 169 VIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKN 228

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             P+  T++ L++  CKE R+D+A  +  +M  +G   N VT++ LID   K+ ++  A 
Sbjct: 229 CNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAA 288

Query: 118 DVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + + M      PN            + G+  +A+ L + M+ +  +P+ +   T+ +
Sbjct: 289 KLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIIN 346



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 8/147 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   + A++L+ ++ ++G +P+++ Y   I G C   + DEA  + +++      PN
Sbjct: 383 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPN 442

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T++ L+  F K+G    A +++ +M+ +  + NVV  S L++G  +S  ++ A  V+ 
Sbjct: 443 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWT 502

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLR 148
            M    + P++          Y SM++
Sbjct: 503 HMLGEGLKPDVVA--------YSSMIK 521



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSIT 64
            L  AL ++  +   GL+PD++ Y+++I G C +  +D+ ++LF ++ C + K  P+ +T
Sbjct: 493 RLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVT 552

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKG 92
           + IL +A C++  +  A  + + ML++G
Sbjct: 553 YNILFNALCRQDNLTRAIDLLNSMLDEG 580


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 12/161 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LFG++  +   PD+ITY+ +I G+C L+R++ A  LF+ +      P+ +TF  L++ +
Sbjct: 66  RLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGY 125

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C  G +DDA  +  +++      +V TY+ L+DG+ K + M  A  V + M +    PN+
Sbjct: 126 CNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNV 185

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       AG+PT A +L + M+ NG+ P+ +   +L
Sbjct: 186 VIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSL 226



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +T  G+EP+++TYN++I G+C  N +D  + L E++T     P+  T+  LID  CK GR
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
           + +   +F +M  K    +V+TYSCLI G+ K   +  A  ++++M +    P++   PT
Sbjct: 61  VPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPT 120

Query: 138 ------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       +A +L + ++ +   PD    ++L D
Sbjct: 121 LVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVD 158



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 3/129 (2%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C LD    A  LF  +  +   PD++T+ T++ GYC+   +D+A +L E++      P+ 
Sbjct: 91  CKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDV 150

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+T L+D FCK  RM +A  +  +M +   + NVV Y+ LID +  +     A+ + EE
Sbjct: 151 YTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEE 210

Query: 123 MCENNISPN 131
           M  N + PN
Sbjct: 211 MVGNGVQPN 219



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 13/159 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++      PD+ TY +++ G+C + R+ EA ++ +++   + +PN + +T 
Sbjct: 131 VDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTA 190

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN- 126
           LIDAFC  G+   A  +  +M+  G + N +TY  LI G+  + +++ A  + E +  N 
Sbjct: 191 LIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNE 250

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           N   ++             GR + A++L +++ ++G  P
Sbjct: 251 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPP 289



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILI 69
           A KL  ++   G++P+ ITY ++I G+C    L+EA ++ E+L   +  K +   + +++
Sbjct: 204 AYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMM 263

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK-SQNMKSAFDVYEEMCENNI 128
           D  C+ GRM  A  +   + + G       Y  LI G    S+  +    VYE + +   
Sbjct: 264 DGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGEMTLSRKGRPNAKVYEAVIQELA 323

Query: 129 SPNIAGRPTEAMQLYDSMLRN 149
                GR  +A  L D +L N
Sbjct: 324 R---EGRHEKANALSDELLGN 341


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A +L+ ++  + + PD++T+N++I G+C + +L EA  LF ++    + P+
Sbjct: 209 LCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPD 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF+IL+DA CK+G +  A  M + M+++G   +VVTYS L+DGY     +  A  V+ 
Sbjct: 269 VYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFS 328

Query: 122 EMCENNISP---------NIAGRPT---EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    ++P         N  G+     EA+ L+  M   GI PD +  ++L D
Sbjct: 329 TMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLID 382



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL LF ++  +G+ PD +TYN++I G C L R+  A QL +++    +  + +T+  
Sbjct: 355 VDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNS 414

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK   +D A  +  K+ ++G + ++ TY+ LIDG  K   +K+A DV++++    
Sbjct: 415 LIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKG 474

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            S N              G   EA  L   M  NGI+PD +   T+
Sbjct: 475 YSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETI 520



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL     +   G   D ++Y T+I G C +     A+Q+ +K+    +  + + + I
Sbjct: 145 LKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNI 204

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I++ CK+  + DA  ++S+M+ K    +VVT++ LI G+     +K AF ++ EM   N
Sbjct: 205 IINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKN 264

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+P++             G  T A  +   M++ G++PD +  S+L D
Sbjct: 265 INPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMD 312



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     A  +F ++   G  P  IT+NT+I G C   +L EA+   + +  +    + 
Sbjct: 105 CHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQ 164

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  LI+  CK G    A  M  K+  K    +VV Y+ +I+   K + +  A+ +Y E
Sbjct: 165 VSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSE 224

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+            + G+  EA  L+  M+   I PD    S L D
Sbjct: 225 MITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVD 277



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K  H+D A+ L  ++ D+G++P + TYN +I G C   RL  A  +F+ L       
Sbjct: 418 VLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSV 477

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ T+ I+I+  CKEG  ++A ++ SKM   G   + VTY  +I   F+    + A  + 
Sbjct: 478 NAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLL 537

Query: 121 EEM 123
            EM
Sbjct: 538 REM 540



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +F  ++  G+ P   +YN +I G   +  +DEA+ LF+++ C  + P+++T+  
Sbjct: 320 VNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+  A  +  +M   G  A+++TY+ LID   K+ ++  A  + +++ +  
Sbjct: 380 LIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQG 439

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I P++             GR   A  ++  +L  G
Sbjct: 440 IQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKG 474



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 23/162 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ ++  A  +   +  +G+ PD++TY++++ GYC +N +++A  +F  ++ + + P+
Sbjct: 279 LCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPH 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + ++ I+I+   K   +D+A  +F +M  KG   + VTY+ LIDG               
Sbjct: 339 AHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDG--------------- 383

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +C+        GR + A QL D M  NGI  D L  ++L D
Sbjct: 384 -LCK-------LGRISYAWQLVDEMHNNGIPADILTYNSLID 417



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 25  PDIITYNTIICGYCSLN--RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           P I+ +N I+      N      A+ L  +L    + P  +TF IL++ +C  G M  A 
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAF 114

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +F+K+L+ G     +T++ LI+G   +  +K A   ++ +
Sbjct: 115 SIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHV 155



 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  +F  L  +G   +  TYN +I G C     +EA  L  K+    + P+
Sbjct: 454 LCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPD 513

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++T+  +I A  ++   + A  +  +M+ +G
Sbjct: 514 AVTYETIIRALFRKDENEKAEKLLREMIIRG 544


>gi|222613030|gb|EEE51162.1| hypothetical protein OsJ_31934 [Oryza sativa Japonica Group]
          Length = 404

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +  AA+++F ++  +G+   ++TYN++I G CS  +++E V+L E++  + L PN I
Sbjct: 211 KNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEI 270

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  ++  FCK+G M DA      M E+  + +VV Y+ LID Y +   M+ A  V E M
Sbjct: 271 TFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAM 330

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  ISPN+            +G    A  L D M   GI  D
Sbjct: 331 AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 373



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 15/160 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D  LK   ++ + G+ P  +T+  +I GYC  +    AV++FE++    +  + +T+ 
Sbjct: 182 HVDMLLK---EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 238

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++++   +  +M + G   N +T+ C++ G+ K   M  A D  + M E 
Sbjct: 239 SLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTER 298

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N+ P++             G+  +AM + ++M + GI P+
Sbjct: 299 NVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 338



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 15/157 (9%)

Query: 22  GLEPDIITYNTIICGYC---SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78
           GL P + TYN++I GYC       +     L +++    + P ++TF +LI+ +CK    
Sbjct: 156 GLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNT 215

Query: 79  DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------- 131
             A  +F +M ++G  A+VVTY+ LI G      ++    + EEM +  +SPN       
Sbjct: 216 AAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCV 275

Query: 132 -----IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  G   +A    D M    + PD ++ + L D
Sbjct: 276 LKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILID 312



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 53/87 (60%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +T+R +EPD++ YN +I  Y  L ++++A+ + E +    + PN  T+  LI  F + G 
Sbjct: 295 MTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 354

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLI 104
              A+ +  +M EKG +A+VVTY+ LI
Sbjct: 355 WRSASGLLDEMKEKGIEADVVTYNVLI 381



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 15/131 (11%)

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG---RMDDATMMFSKMLEKGPKA 95
           ++ +L +A  + + +    L P+  T+  LID +CK+G    M    M+  +M+E G   
Sbjct: 138 AIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISP 197

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLY 143
             VT+  LI+GY K+ N  +A  V+EEM +  I+ ++             G+  E ++L 
Sbjct: 198 TAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLM 257

Query: 144 DSMLRNGIMPD 154
           + M   G+ P+
Sbjct: 258 EEMEDLGLSPN 268



 Score = 38.5 bits (88), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+ +   +  +G+ P++ TYN +I G+        A  L +++    ++ + +T+ 
Sbjct: 319 KMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYN 378

Query: 67  ILIDAFCKEGRMDDATMMFSK 87
           +LI A C +G   + +M F K
Sbjct: 379 VLIGALCCKG---EESMTFIK 396


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAAL++F ++ +RG  PD  TY T+I G C L ++ EA +LF+++      P  +T+T 
Sbjct: 172 MDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTS 231

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+   +D A  +  +M  KG K NV TYS L+DG+ KS     A ++ + M    
Sbjct: 232 LIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRR 291

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLL 157
             PN+             G+  EA+++ D M   G+ PD  L
Sbjct: 292 HLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGL 333



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A++L  ++  +G++P++ TY++++ G+C       A++L + +   +  PN IT++ 
Sbjct: 242 LDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYST 301

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   CKEG++ +A  +  +M  +G + +   Y  +I G+        A +  +EM    
Sbjct: 302 LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGG 361

Query: 128 ISPN--------------IAG----RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           ISPN              + G     P  A QLY SM   GI  D     +L +Y
Sbjct: 362 ISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNY 416



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 13/176 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++ +   EP   +Y T+       N+L  A++ +  +  + + P+  +  +LI 
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 71  AFCK-EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           A CK  G MD A  +F +M  +G   +  TY  LI+G  +   +  A ++++EM     S
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACS 223

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           P +    +             A++L + M   GI P+    S+L D + +S  S  
Sbjct: 224 PTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSR 279



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A+++  ++  +GL PD   Y  II G+C + +  EA    +++    + PN
Sbjct: 306 LCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPN 365

Query: 62  SITFT-------ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            +T++       I++   C E   + A  ++  M  +G   +  T+  L++ +    ++ 
Sbjct: 366 RLTWSLHVRIHNIVVQGLCTE-HPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLH 424

Query: 115 SAFDVYEEMCENNISPN 131
            A  + +EM  +   P+
Sbjct: 425 KAAHLVDEMVLDGCIPD 441


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 95/161 (59%), Gaps = 12/161 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE  L  A +L+ ++  RG+ PD ITYN++I G+C  N L EA Q+F+ +     +P
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T++ILI+++CK  R+DD   +F ++  KG   N +TY+ L+ G+ +S  + +A +++
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 443

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRN 149
           +EM    + P++             G   +A+++++ M ++
Sbjct: 444 QEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS 484



 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 97/179 (54%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A ++F  +  +G EPDI+TY+ +I  YC   R+D+ ++LF +++   L PN+I
Sbjct: 362 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 421

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+  FC+ G+++ A  +F +M+ +G   +VVTY  L+DG   +  +  A +++E+M
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            ++ ++  I            A +  +A  L+ S+   G+ PD      +  YN+   G
Sbjct: 482 QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD------VVTYNVMIGG 534



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 96/173 (55%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   D AL LF ++  +G++ D++TY+++I G C+  + D+  ++  ++    + P+
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LID F KEG++ +A  ++++M+ +G   + +TY+ LIDG+ K   +  A  +++
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 374

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            M      P+I            A R  + M+L+  +   G++P+ +  +TL 
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL L  ++ + G +PD +TY  ++   C       A+ LF K+    +K + + ++
Sbjct: 190 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYS 249

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+ID+ CK+G  DDA  +F++M  KG KA+VVTYS LI G            +  EM   
Sbjct: 250 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 309

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI P++             G+  EA +LY+ M+  GI PD +  ++L D
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 358



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  + G+    G EPD IT++T++ G+C   R+ EAV L +++  ++ +P+ +T + LI+
Sbjct: 124 AFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLIN 183

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C +GR+ +A ++  +M+E G + + VTY  +++   KS N   A D++ +M E NI  
Sbjct: 184 GLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA 243

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G   +A+ L++ M   GI  D +  S+L
Sbjct: 244 SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 286



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL LF ++ +R ++  ++ Y+ +I   C     D+A+ LF ++    +K + +T++ LI 
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C +G+ DD   M  +M+ +    +VVT+S LID + K   +  A ++Y EM    I+P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           +     +            EA Q++D M+  G  PD +  S L
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 73/125 (58%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+AA +LF ++  RG+ P ++TY  ++ G C    L++A+++FEK+   ++      + 
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 494

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I   C   ++DDA  +F  + +KG K +VVTY+ +I G  K  ++  A  ++ +M E+
Sbjct: 495 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554

Query: 127 NISPN 131
             +P+
Sbjct: 555 GCTPD 559



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 67/117 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ AL++F ++    +   I  YN II G C+ +++D+A  LF  L+   +KP+ +T+ 
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 529

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++I   CK+G + +A M+F KM E G   +  TY+ LI  +     + S+ ++ EEM
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 586



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 23/133 (17%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+E D+ T   +I  YC   +L  A  +  +   +  +P++ITF+ L++ FC EGR+ +A
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQ 141
             +  +M+E   + ++VT S LI+G                +C       + GR +EA+ 
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLING----------------LC-------LKGRVSEALV 196

Query: 142 LYDSMLRNGIMPD 154
           L D M+  G  PD
Sbjct: 197 LIDRMVEYGFQPD 209



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  LF  L+D+G++PD++TYN +I G C    L EA  LF K+      P+  T+ 
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN 564

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           ILI A      +  +  +  +M   G  A+  T   +ID
Sbjct: 565 ILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KL   +  +G  P+ +TYNT+I G C   +LD+A+ L EK+   +  PN
Sbjct: 254 LSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPN 313

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I+   K+ R +D   +   M E+G KAN   YS LI G FK    ++A  +++
Sbjct: 314 QVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWK 373

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM E    PN+              +P EA  +   ML  G +P+    S+L     +  
Sbjct: 374 EMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKG 433

Query: 170 GSQE 173
            SQ+
Sbjct: 434 DSQK 437



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   +  + +   + +RG + +   Y+++I G     + + AV+L++++     KPN
Sbjct: 324 LVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPN 383

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +   ID  C++ + D+A  +  +ML KG   N  TYS L+ G+FK  + + A  V++
Sbjct: 384 VVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWK 443

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   ++  N+            +GR  EA+ ++  ML  G+ PD +  S++
Sbjct: 444 EMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 495



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+  F ++  +   PD+ TY+T++ G C   R+DEAV L +++      PN
Sbjct: 184 LCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 243

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +LIDA  K G +  A  +   M  KG   N VTY+ LI G      +  A  + E
Sbjct: 244 PVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLE 303

Query: 122 EMCENNISPN 131
           +M  +   PN
Sbjct: 304 KMVSSKCVPN 313



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 15/178 (8%)

Query: 1   MLIKECHLDAALKLFGQL---TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           ++I+E     A K +  +     +G +P+++TYN II   C L ++D AV  F ++    
Sbjct: 145 VIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKN 204

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             P+  T++ L++  CKE R+D+A  +  +M  +G   N VT++ LID   K+ ++  A 
Sbjct: 205 CNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAA 264

Query: 118 DVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + + M      PN            + G+  +A+ L + M+ +  +P+ +   T+ +
Sbjct: 265 KLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIIN 322



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 8/147 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   + A++L+ ++ ++G +P+++ Y   I G C   + DEA  + +++      PN
Sbjct: 359 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPN 418

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T++ L+  F K+G    A +++ +M+ +  + NVV  S L++G  +S  ++ A  V+ 
Sbjct: 419 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWT 478

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLR 148
            M    + P++          Y SM++
Sbjct: 479 HMLGEGLKPDVVA--------YSSMIK 497



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSIT 64
            L  AL ++  +   GL+PD++ Y+++I G C +  +D+ ++LF ++ C + K  P+ +T
Sbjct: 469 RLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVT 528

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKG 92
           + IL +A C++  +  A  + + ML++G
Sbjct: 529 YNILFNALCRQDNLTRAIDLLNSMLDEG 556


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++ +RG+E +++TYNT+I G C   R+ EA +L +++    + PN IT+  LI 
Sbjct: 286 AFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIG 345

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC  G +D A+ +  ++   G   ++VTY+ LI+GY K+ N K   D+  EM    ISP
Sbjct: 346 GFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISP 405

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPD 154
           +                  +A Q+Y SM + G++PD
Sbjct: 406 SKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPD 441



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 16/177 (9%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++IK C    +LD + +L G L D GL P+++ Y T+I G C    ++ A   F+K+  +
Sbjct: 167 IMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEM 226

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  N  TFT+LI+   K+G   D   +F KM   G   N+ TY+CL++ Y     +  A
Sbjct: 227 GLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRA 286

Query: 117 FDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           FD+++EM E  +  N+              R  EA +L D M +  + P+ +  +TL
Sbjct: 287 FDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTL 343



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++    + A   F +L +R ++ D+ ++  +I G C    LD++ QL   L  + L PN
Sbjct: 138 LVRSNCFEKAWLFFNELKER-VKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPN 196

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LID  CK G ++ A + F KM E G  AN  T++ LI+G FK    K  FD++E
Sbjct: 197 VVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFE 256

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M  N + PN+             G+   A  L+D M   G+  + +  +TL
Sbjct: 257 KMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTL 308



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A KL  Q+    + P++ITYNT+I G+C +  LD+A  L ++L    L P+ +
Sbjct: 314 REERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLV 373

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILI+ + K G       +  +M  +G   + VT + LID Y + Q M+ AF +Y  M
Sbjct: 374 TYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSM 433

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  + P++             G   E+ +L+ SM    + P  ++ +T+
Sbjct: 434 EKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTM 483



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 12/158 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++  RG+ P  +T   +I  Y  L  +++A Q++  +    L P+   + +LI   C +G
Sbjct: 397 EMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKG 456

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133
            M +++ +F  M E   + + V Y+ +I GY K  N   A  +  EM    + PN+A   
Sbjct: 457 NMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYS 516

Query: 134 ---------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
                    G+  EA  L D M+   + P   +L+ ++
Sbjct: 517 SIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMIS 554



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   GL P++ TYN ++  YC   ++  A  LF+++    ++ N +T+  LI   C
Sbjct: 254 LFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMC 313

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           +E R+ +A  +  +M +     N++TY+ LI G+    N+  A  + +++  N +SP++ 
Sbjct: 314 REERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLV 373

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      AG       L   M   GI P  +  + L D
Sbjct: 374 TYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLID 415



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 61/124 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A +++  +   GL PD+  Y  +I G C    + E+ +LF  +  + ++P+ + +  
Sbjct: 423 MEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNT 482

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +CKE     A  +  +M  KG   NV +YS +I    K    + A  + ++M E  
Sbjct: 483 MIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQ 542

Query: 128 ISPN 131
           + P+
Sbjct: 543 LKPS 546



 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 37/61 (60%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L  ++  +GL P++ +Y++II   C   + +EA  L +K+  +QLKP++    ++  
Sbjct: 496 ALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMISK 555

Query: 71  A 71
           A
Sbjct: 556 A 556


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL L  Q+ ++G+E D+  Y T+I G C   ++DEA  L  K+    L+PN++ +T +
Sbjct: 427 ERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +DA  K G+  +A  +  K+L+ G + NVVTY  LIDG  K+ ++  A   + +M E  +
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGL 546

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN+             G   +AM L + M+  G+  D ++ ++L D  ++ +  Q+
Sbjct: 547 DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQD 603



 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KLF Q+  RG+ P+  TY +++ G C   RLD+A+ L +++    L PN +
Sbjct: 317 KEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 376

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T+++D  CKEG++ +A  + S M   G KAN + Y+ LI G+F + N + A D+  +M
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQM 436

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               +  +++   T            EA  L   M   G+ P+ ++ +T+ D   ++   
Sbjct: 437 KNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKE 496

Query: 172 QE 173
            E
Sbjct: 497 SE 498



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A+ L  ++ D G +P+++TY  +I G C    + EA+  F K+  + L PN
Sbjct: 490 LFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPN 549

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T LID FCK G ++ A  + ++M++KG   + V Y+ LIDGY K  N++ AF +  
Sbjct: 550 VQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKT 609

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +M E+ +  +       I+G        EA  +   M+  GI PD
Sbjct: 610 KMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPD 654



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  LF ++   G  PD++TYN++I GY     L+E  QL  ++       +
Sbjct: 210 LCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAAD 269

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ F K GRM+ A   F +M  +G  ANVVT+S  +D + K   ++ A  ++ 
Sbjct: 270 VVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFA 329

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    + PN             AGR  +A+ L D M+  G++P+ +  + + D
Sbjct: 330 QMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVD 383



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 71/125 (56%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A   FG++  +G+  +++T++T +  +C    + EA++LF ++    + PN  T+T
Sbjct: 285 RMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYT 344

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D  CK GR+DDA ++  +M+ +G   NVVTY+ ++DG  K   +  A +V   M   
Sbjct: 345 SLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERG 404

Query: 127 NISPN 131
            +  N
Sbjct: 405 GVKAN 409



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 65/128 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A  L  ++   GL P+ + Y TI+       +  EAV L  K+     +PN
Sbjct: 455 LCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPN 514

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK G + +A   F+KM E G   NV  Y+ LIDG+ K  ++  A  +  
Sbjct: 515 VVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMN 574

Query: 122 EMCENNIS 129
           EM +  +S
Sbjct: 575 EMIDKGMS 582



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P++ T+N +I   C    L EA  LF ++  +   P+ +T+  LID + K G +++   +
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
            S+M + G  A+VVTY+ LI+ + K   M+ A+  + EM    +  N+            
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK 317

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G   EAM+L+  M   G+MP+    ++L D
Sbjct: 318 EGLVQEAMKLFAQMRVRGMMPNEFTYTSLVD 348



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+ L  ++  +GL P+++TY  ++ G C   ++ EA  +   +    +K N +
Sbjct: 352 KAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANEL 411

Query: 64  TFTILIDA-----------------------------------FCKEGRMDDATMMFSKM 88
            +T LI                                      CK+ ++D+A  +  KM
Sbjct: 412 LYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKM 471

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
              G + N V Y+ ++D  FK+     A  +  ++ ++   PN+            AG  
Sbjct: 472 AGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSI 531

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +EA+  ++ M   G+ P+    + L D
Sbjct: 532 SEAISHFNKMRELGLDPNVQAYTALID 558



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ L  ++ D+G+  D + Y ++I GY     L +A  L  K+    L+ +   +T 
Sbjct: 566 LNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTC 625

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            I  FC    M +A  + S+M+  G   +   Y+CLI  Y K  NM+ A  +  EM
Sbjct: 626 FISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEM 681



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 47/86 (54%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+ +L  A  L  ++ + GL+ D+  Y   I G+C++N + EA  +  ++    + P+ 
Sbjct: 596 MKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDK 655

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKM 88
             +  LI  + K G M++A+ + ++M
Sbjct: 656 TVYNCLIRKYQKLGNMEEASSLQNEM 681


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 10/169 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  L  A KL  ++  R ++PD ITYN +I G+C  NRLDEA Q+F+ +      PN
Sbjct: 338 FFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPN 397

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI+ FCK  R++D   +F +M ++G   N VTY+ +I G+F++ +  SA  V++
Sbjct: 398 IQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFK 457

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN-LQSS 169
           +M  N +       PT+ M    S+L +G+   G L + L  +  LQ S
Sbjct: 458 QMVSNRV-------PTDIMTY--SILLHGLCSYGKLDTALVIFKYLQKS 497



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL L  ++    ++ +++ +NTII   C    ++ AV LF ++    ++PN
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  C  GR  DA+ + S MLEK    NVVT++ LID +FK   +  A  ++E
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM + +I P+            +  R  EA Q++  M+    +P+
Sbjct: 353 EMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPN 397



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 18/176 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  Q+  RG +PD++TY T++ G C    +D A+ L  K+   ++K N + F  +ID
Sbjct: 207 AVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIID 266

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK   ++ A  +F++M  KG + NVVTY+ LI+          A  +   M E  I+P
Sbjct: 267 SLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINP 326

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           N+             G+  EA +L++ M++  I PD +       YNL  +G   H
Sbjct: 327 NVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTI------TYNLLINGFCMH 376



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G +PD  T+ T+I G    N+  EAV L +++     +P+ 
Sbjct: 164 CHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 223

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +++  CK G +D A  + +KM     KANVV ++ +ID   K ++++ A D++ E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE 283

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN+             GR ++A +L  +ML   I P+ +  + L D
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALID 336



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   + ++ + P+++T+N +I  +    +L EA +L E++    + P++IT+ +LI+
Sbjct: 312 ASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLIN 371

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC   R+D+A  MF  M+ K    N+ TY+ LI+G+ K + ++   +++ EM +  +  
Sbjct: 372 GFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVG 431

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N             AG    A  ++  M+ N +  D +  S L
Sbjct: 432 NTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSIL 474



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 88/167 (52%), Gaps = 15/167 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A ++F  +  +   P+I TYNT+I G+C   R+++ V+LF +++   L  N++T+T
Sbjct: 378 RLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYT 437

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  F + G  D A M+F +M+      +++TYS L+ G      + +A  +++ + ++
Sbjct: 438 TIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKS 497

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  NI            AG+  EA  L+ S+    I PD +  +T+
Sbjct: 498 EMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTM 541



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LFG +      P I+ +N ++     +N+ +  + L E++  + +  +  T++I
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I+ FC+  ++  A  + +KM++ G + ++VT S L++GY  S+ +  A  + ++M E  
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P+            +  + +EA+ L D M++ G  PD +   T+ +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D+A  +F Q+    +  DI+TY+ ++ G CS  +LD A+ +F+ L   +++ N   +  +
Sbjct: 450 DSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTM 509

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G++ +A  +F  +     K +VVTY+ +I G    + ++ A D++ +M E+  
Sbjct: 510 IEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGT 566

Query: 129 SPN 131
            PN
Sbjct: 567 LPN 569



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL +F  L    +E +I  YNT+I G C   ++ EA  LF  L+   +KP+ +T+  
Sbjct: 484 LDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNT 540

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C +  + +A  +F KM E G   N  TY+ LI    +  +  ++ ++ +EM    
Sbjct: 541 MISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEM---- 596

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
            S    G  +  + L  +ML +G +    L
Sbjct: 597 RSSGFVGDAS-TISLVTNMLHDGRLDKSFL 625


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 12/154 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  + I +N+II  +C   R+ E+ +LF+ +  + +KPN IT++ L
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+AT + S M   G K + VTY+ LI+GY +   M  A  +++EM  + +
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNG 150
           SPNI              R   A +LY  + ++G
Sbjct: 578 SPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 48/214 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++P++ITY+T+I GYC   ++DEA +L   +  V +KP+ +
Sbjct: 488 KEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCV 547

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI+ +C+  RMDDA  +F +M+  G   N++TY+ ++ G F ++   +A ++Y   
Sbjct: 548 TYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGI 607

Query: 121 ----------------EEMCENNISP---------------------NI-------AGRP 136
                             +C+NN++                      NI        GR 
Sbjct: 608 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 667

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            EA  L+ ++  NG++PD    S +A+ NL   G
Sbjct: 668 DEAKDLFAALSANGLVPDVRTYSLMAE-NLIEQG 700



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGLEPDI TY T++ GY +   L E   L + +    + P+   F ILI 
Sbjct: 320 ARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILIC 379

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+ ++D+A ++FSKM + G   NVVTY  +I    KS ++  A   +E+M +  ++P
Sbjct: 380 AYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439

Query: 131 NI-----------------------------------------------AGRPTEAMQLY 143
           NI                                                GR  E+ +L+
Sbjct: 440 NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLF 499

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ P+ +  STL D
Sbjct: 500 DLMVRIGVKPNVITYSTLID 519



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +D A+  F Q+ D GL P+II Y ++I   C  ++ D+A +L  ++    +  
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL 474

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+I F  +I + CKEGR+ ++  +F  M+  G K NV+TYS LIDGY  +  M  A  + 
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
             M    + P+       I G     R  +A+ L+  M+ +G+ P+
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 11  ALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           AL+L   + D    G  PD+++Y T+I G+      D+A   + ++   ++ P+ +T++ 
Sbjct: 177 ALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I A CK   MD A  + + M++ G   N +TY+ ++ GY  S+  K A    ++M  + 
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG 296

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + P++             GR TEA +++DSM + G+ PD
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE   D A   + ++ DR + PD++TY++II   C    +D+A+++   +    + PN
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPN 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++  +C   +  +A     KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFD 325

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P+IA            G   E   L D M+RNGI PD  + + L
Sbjct: 326 SMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNIL 377



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ P+ +TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 241 LCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD 300

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  +F  M ++G + ++ TY  L+ GY     +     + +
Sbjct: 301 VVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLD 360

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPD 154
            M  N I P     NI         +  EAM ++  M ++G+ P+
Sbjct: 361 LMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPN 405



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++   GL P+++TY  +I   C    +D+A+  FE++    L PN I
Sbjct: 383 KQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNII 442

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI + C   + D A  +  +ML++G   N + ++ +I  + K   +  +  +++ M
Sbjct: 443 VYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLM 502

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + PN+            AG+  EA +L  SM   G+ PD +  +TL
Sbjct: 503 VRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL-FEKLTCVQLKPNSITF 65
            LD      G +  +G   + IT+  ++ G C+  R  +A+ +   ++T +   P+  + 
Sbjct: 102 RLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSC 161

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           TIL+   C E R  +A  +   M +    G   +VV+Y+ +I+G+FK  +   A+  Y E
Sbjct: 162 TILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHE 221

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           M +  ISP++    +            +AM++  +M++NG+MP+
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPN 265



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+    PD+ +   ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSY 199

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I+ F KEG  D A   + +ML++    +VVTYS +I    K Q M  A +V   M +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK 259

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N + PN             + +P EA+     M  +G+ PD +  ++L DY  ++  S E
Sbjct: 260 NGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTE 319



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T  G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 599 AAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 658

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GR D+A  +F+ +   G   +V TYS + +   +   ++   D++  M EN  +
Sbjct: 659 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCT 718

Query: 130 PN 131
            N
Sbjct: 719 AN 720



 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I     + R DEA  LF  L+   L P+  T++++
Sbjct: 633 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 692

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  AN
Sbjct: 693 AENLIEQGLLEELDDLFLSMEENGCTAN 720



 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFTI 67
           A  +F +L  RG    I   N  +    + +    AV  + ++      ++ P   T+ I
Sbjct: 34  ARHVFEELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGAGKVTPTVHTYGI 92

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C+ GR+D        +++KG +   +T++ L+ G    +    A D V   M E 
Sbjct: 93  LIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 152

Query: 127 NISPNI 132
           +  P++
Sbjct: 153 SCMPDV 158


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE H++AA +L   LT +G+ PD+ T+N++I G C  +  + A++LFE++      P+
Sbjct: 382 LCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPD 441

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ILI++ C E R+ +A M+  +M   G   NVV Y+ LIDG  K+  +  A D+++
Sbjct: 442 EFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFD 501

Query: 122 EM-----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M       ++++ N        + R  EA QL D M+  G+ PD    +T+  Y
Sbjct: 502 QMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKY 556



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 72/130 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  H+   L++   + ++G E D+ TYN++I G C L  +DEAV++   +     +PN
Sbjct: 312 LCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPN 371

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  LI   CKE  ++ AT +   +  KG   +V T++ LI G   + N + A +++E
Sbjct: 372 TVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFE 431

Query: 122 EMCENNISPN 131
           EM E    P+
Sbjct: 432 EMKEKGCDPD 441



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L  AL L  ++   G   +++ YNT+I G C  NR+ +A  +F+++  + +  +
Sbjct: 452 LCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRS 511

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T+  LI+  CK  R+++A  +  +M+ +G K +  TY+ ++  + +  ++K A D+ +
Sbjct: 512 SVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQ 571

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIM 152
            M  N   P+I            AGR   A +L  S+   G++
Sbjct: 572 NMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMV 614



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +L  Q+   GL+PD  TY T++  +C    +  A  + + +T    +P+
Sbjct: 522 LCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPD 581

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK GR+D A+ +   +  KG       Y+ +I    K +  K A  ++ 
Sbjct: 582 IVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFR 641

Query: 122 EMCENNISPNI-------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM E    P++              G   EA+     ML  GI+P+
Sbjct: 642 EMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPE 687



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+K   L     L  ++    + PD+ T+N +I   C  ++L  A+ + E +    L+P
Sbjct: 173 LLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRP 232

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-V 119
           +  TFT L+  F +E  ++ A  +   M+E G +   V+ + L++G  K   ++ A   +
Sbjct: 233 DEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFI 292

Query: 120 YEE--MCENNISPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           YEE   C + ++ N         G   + +++ D ML  G   D
Sbjct: 293 YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELD 336



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 18/172 (10%)

Query: 7   HLDAALKLFGQLTDR--GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           HL A +     L +R   ++PD   YN  +      N+L     L  K+    + P+  T
Sbjct: 142 HLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVST 201

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F ILI A CK  ++  A +M   M   G + +  T++ L+ G+ +  +++ A  + E M 
Sbjct: 202 FNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMV 261

Query: 125 EN-----NISPNI-------AGRPTEAMQ-LYDSMLRNGIMPDGLLLSTLAD 163
           E+     ++S N+        GR  EA++ +Y+     G  PD +  + L +
Sbjct: 262 ESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEE---EGFCPDQVTFNALVN 310


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +  AA+++F ++  +G+   ++TYN++I G CS  +++E V+L E++  + L PN I
Sbjct: 276 KNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEI 335

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  ++  FCK+G M DA      M E+  + +VV Y+ LID Y +   M+ A  V E M
Sbjct: 336 TFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAM 395

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  ISPN+            +G    A  L D M   GI  D
Sbjct: 396 AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 438



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    +D A K F     R + PDI T+NT+I G C + +L +A  + + +    L P+
Sbjct: 166 LVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPS 225

Query: 62  SITFTILIDAFCKE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
             T+  LID +CK+   G M    M+  +M+E G     VT+  LI+GY K+ N  +A  
Sbjct: 226 VATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVR 285

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           V+EEM +  I+ ++             G+  E ++L + M   G+ P+
Sbjct: 286 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 15/160 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D  LK   ++ + G+ P  +T+  +I GYC  +    AV++FE++    +  + +T+ 
Sbjct: 247 HVDMLLK---EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++++   +  +M + G   N +T+ C++ G+ K   M  A D  + M E 
Sbjct: 304 SLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTER 363

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N+ P++             G+  +AM + ++M + GI P+
Sbjct: 364 NVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 4/145 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A  L  ++ ++G+E D++TYN +I   C    + +AV+L ++++ V L+PN +T+  +I
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC +G +  A  + ++M +   +ANVVTY+  I  + +   M  A D+  EM +  + 
Sbjct: 482 QGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541

Query: 130 PNIAGRPTEAMQLYDSMLRNGIMPD 154
           PN  G   E ++  + M+  G  PD
Sbjct: 542 PN--GITYETIK--EGMMEKGYTPD 562



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ +   +  +G+ P++ TYN +I G+        A  L +++    ++ + +T+ +
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A C +G +  A  +  +M E G + N +TY+ +I G+    N+KSA+++   M +  
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              N+             G+  EA  L + ML   ++P+G+   T+ +
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKE 552



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P   + N ++ G     R+D A + F      ++ P+  TF  +I   C+ G++  A  
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV---YEEMCENNISP 130
           +   +   G   +V TY+ LIDGY K     + + V    +EM E  ISP
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISP 262


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A KL   +  R ++PDI TYN++I G+C  +RLD+A Q+FE +      P+
Sbjct: 264 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI  FCK  R++D T +F +M  +G   + VTY+ LI G F   +  +A  V++
Sbjct: 324 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 383

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M  + + P+I             G+  +A++++D M ++ I  D  + +T+
Sbjct: 384 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 435



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++  +G+ P+++TY+++I   CS  R  +A QL   +   ++ PN
Sbjct: 194 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN 253

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LIDAF KEG+  +A  +   M+++    ++ TY+ LI+G+     +  A  ++E
Sbjct: 254 LVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE 313

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M   +  P++            + R  +  +L+  M   G++ D +  +TL
Sbjct: 314 FMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 365



 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  L  ++    +E D++ +NTII   C    +D+A+ LF+++    ++PN
Sbjct: 159 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 218

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI   C  GR  DA+ + S M+EK    N+VT++ LID + K      A  +++
Sbjct: 219 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 278

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +M + +I P+I              R  +A Q+++ M+     PD
Sbjct: 279 DMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 323



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  RG +P+++TY  ++ G C    +D A  L  K+   +++ + + F  +ID
Sbjct: 133 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIID 192

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK   +DDA  +F +M  KG + NVVTYS LI           A  +  +M E  I+P
Sbjct: 193 SLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 252

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N+             G+  EA +L+D M++  I PD
Sbjct: 253 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 288



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 16/186 (8%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+  L  +L L G++   G EP I+T ++++ GYC   R+ +AV L +++  +  +P++
Sbjct: 55  MKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 114

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ITFT LI       +  +A  +  +M+++G + N+VTY  +++G  K  ++  AF++  +
Sbjct: 115 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNK 174

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNL 166
           M    I  ++    T            +A+ L+  M   GI P+ +    L+S L  Y  
Sbjct: 175 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 234

Query: 167 QSSGSQ 172
            S  SQ
Sbjct: 235 WSDASQ 240



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F Q+   G+ PDI+TY+ ++ G C+  +L++A+++F+ +   ++K +   +T +
Sbjct: 376 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 435

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G++DD   +F  +  KG K NVVTY+ +I G    + ++ A+ + ++M E+  
Sbjct: 436 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 495

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            P+     T    L  + LR+G
Sbjct: 496 LPDSGTYNT----LIRAHLRDG 513



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +LF +++ RGL  D +TY T+I G       D A ++F+++    + P+ +
Sbjct: 336 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 395

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  C  G+++ A  +F  M +   K ++  Y+ +I+G  K+  +   +D++  +
Sbjct: 396 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 455

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+    T            EA  L   M  +G +PD    +TL   +L+
Sbjct: 456 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 511



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 61/116 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL++F  +    ++ DI  Y T+I G C   ++D+   LF  L+   +KPN +T+  
Sbjct: 410 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 469

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +I   C +  + +A  +  KM E GP  +  TY+ LI  + +  +  ++ ++  EM
Sbjct: 470 MISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 525



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D    LF  L+ +G++P+++TYNT+I G CS   L EA  L +K+      P+S 
Sbjct: 441 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 500

Query: 64  TFTILIDAFCKEG 76
           T+  LI A  ++G
Sbjct: 501 TYNTLIRAHLRDG 513


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A  L+ ++  RG+ PD ITY T+I G+C L +L  A  L +++    + P 
Sbjct: 160 LCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPG 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + ILI+A CKEG + +A  + + M ++G K  VVTYS L+DGY     +++A  ++ 
Sbjct: 220 VYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFH 279

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +  ++PN+              R  EAM L   ML   ++PD +  ++L D
Sbjct: 280 AMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLID 333



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +   G+ P++ +YN +I G C   R+DEA+ L  ++    + P+++T+  LID
Sbjct: 274 AKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLID 333

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+  A  + ++M  +G  A+VVTY+ L+D   K+QN+  A  ++ +M E  I P
Sbjct: 334 GLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQP 393

Query: 131 NI------------AGRPTEAMQLYDSMLRNG 150
            +             GR   A +L+  +L  G
Sbjct: 394 TMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 425



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 10/151 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  A  L   +T  G++P ++TY+T++ GYC +  +  A Q+F  +  + + PN
Sbjct: 230 LCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPN 289

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ I+I+  CK  R+D+A  +  +ML K    + VTY+ LIDG  KS  + SA ++  
Sbjct: 290 VYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMN 349

Query: 122 EMCENNISPNIAGRPTEAM---QLYDSMLRN 149
           EM          G+P + +    L D++ +N
Sbjct: 350 EMHHR-------GQPADVVTYTSLLDALCKN 373



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A+ L  ++  + + PD +TYN++I G C   R+  A+ L  ++       + +T+T
Sbjct: 305 RVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYT 364

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+DA CK   +D AT +F KM E+G +  + TY+ LIDG  K   +K+A ++++ +   
Sbjct: 365 SLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK 424

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
               ++             G   EA+ +   M  NG +P+ +
Sbjct: 425 GCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAV 466



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +L    ++  +G + D ++Y T++ G C +     AV+L   +     +PN + +  +ID
Sbjct: 99  SLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIID 158

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+  +++A  ++S+M  +G   + +TY+ LI G+     +  AF + +EM   NI+P
Sbjct: 159 GLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINP 218

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +             G   EA  L   M + GI P  +  STL D
Sbjct: 219 GVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMD 263



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 63/122 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A  LF ++ +RG++P + TY  +I G C   RL  A +LF+ L       +
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCID 429

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I   CKEG  D+A  + SKM + G   N VT+  +I   F+      A  +  
Sbjct: 430 VWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLH 489

Query: 122 EM 123
           EM
Sbjct: 490 EM 491



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 15/163 (9%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     +  + G++   G +PD IT NT++ G C    + +++   +K+     + + 
Sbjct: 56  CHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDH 115

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  L++  CK G    A  +   + ++  + NVV Y+ +IDG  K + +  A+D+Y E
Sbjct: 116 VSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSE 175

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           M    I P+            + G+   A  L D M+   I P
Sbjct: 176 MDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINP 218



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A+ L  Q+  +G+  + +T N +I  +C L ++  +  +  K+  +  +P++IT   L+
Sbjct: 28  TAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLM 87

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C +G +  +     K++ +G + + V+Y  L++G  K    + A  +   + + +  
Sbjct: 88  KGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTR 147

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           PN+    T            EA  LY  M   GI PD +  +TL
Sbjct: 148 PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTL 191



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A +LF  L  +G   D+ TY  +I G C     DEA+ +  K+      PN
Sbjct: 405 LCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPN 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++TF I+I +  ++   D A  +  +M+ KG
Sbjct: 465 AVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 495



 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 51/99 (51%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P II +N I+     + +   A+ L +++    ++ N +T  ILI+ FC  G+M  +  +
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             K+L+ G + + +T + L+ G      +K +   ++++
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKV 106


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A KL   +  R ++PDI TYN++I G+C  +RLD+A Q+FE +      P+
Sbjct: 265 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI  FCK  R++D T +F +M  +G   + VTY+ LI G F   +  +A  V++
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  + + P+I             G+  +A++++D M ++ I  D  + +T+ +
Sbjct: 385 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 438



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF ++  +G+ P+++TY+++I   CS  R  +A QL   +   ++ PN
Sbjct: 195 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LIDAF KEG+  +A  +   M+++    ++ TY+ LI+G+     +  A  ++E
Sbjct: 255 LVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE 314

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M   +  P++            + R  +  +L+  M   G++ D +  +TL
Sbjct: 315 FMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 366



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  L  ++    +E D++ +NTII   C    +D+A+ LF+++    ++PN
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI   C  GR  DA+ + S M+EK    N+VT++ LID + K      A  +++
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 279

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +M + +I P+I              R  +A Q+++ M+     PD
Sbjct: 280 DMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++  RG +P+++TY  ++ G C    +D A  L  K+   +++ + + F  +ID
Sbjct: 134 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIID 193

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK   +DDA  +F +M  KG + NVVTYS LI           A  +  +M E  I+P
Sbjct: 194 SLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 253

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N+             G+  EA +L+D M++  I PD
Sbjct: 254 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 289



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 16/185 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   +  AL L G++   G EP I+T ++++ GYC   R+ +AV L +++  +  +P++I
Sbjct: 57  RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 116

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI       +  +A  +  +M+++G + N+VTY  +++G  K  ++  AF++  +M
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL----LLSTLADYNLQ 167
               I  ++    T            +A+ L+  M   GI P+ +    L+S L  Y   
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236

Query: 168 SSGSQ 172
           S  SQ
Sbjct: 237 SDASQ 241



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F Q+   G+ PDI+TY+ ++ G C+  +L++A+++F+ +   ++K +   +T +
Sbjct: 377 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 436

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G++DD   +F  +  KG K NVVTY+ +I G    + ++ A+ + ++M E+  
Sbjct: 437 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 496

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            P+     T    L  + LR+G
Sbjct: 497 LPDSGTYNT----LIRAHLRDG 514



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +LF +++ RGL  D +TY T+I G       D A ++F+++    + P+ +
Sbjct: 337 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 396

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  C  G+++ A  +F  M +   K ++  Y+ +I+G  K+  +   +D++  +
Sbjct: 397 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 456

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+    T            EA  L   M  +G +PD    +TL   +L+
Sbjct: 457 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 512



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I  +N ++     + + D  + L EK+  + +  N  T+ ILI+ FC+  ++  A  +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------I 132
             KM++ G + ++VT S L++GY   + +  A  + ++M E    P+            +
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
             + +EA+ L D M++ G  P+
Sbjct: 128 HNKASEAVALVDRMVQRGCQPN 149



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 61/116 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL++F  +    ++ DI  Y T+I G C   ++D+   LF  L+   +KPN +T+  
Sbjct: 411 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 470

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +I   C +  + +A  +  KM E GP  +  TY+ LI  + +  +  ++ ++  EM
Sbjct: 471 MISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 526



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 64/126 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  ++   G+  ++ TYN +I  +C  +++  A+ L  K+  +  +P+ +T + 
Sbjct: 26  FDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 85

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ +C   R+ DA  +  +M+E G + + +T++ LI G F       A  + + M +  
Sbjct: 86  LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 145

Query: 128 ISPNIA 133
             PN+ 
Sbjct: 146 CQPNLV 151



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D    LF  L+ +G++P+++TYNT+I G CS   L EA  L +K+      P+S 
Sbjct: 442 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 501

Query: 64  TFTILIDAFCKEG 76
           T+  LI A  ++G
Sbjct: 502 TYNTLIRAHLRDG 514


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +  AA+++F ++  +G+   ++TYN++I G CS  +++E V+L E++  + L PN I
Sbjct: 276 KNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEI 335

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  ++  FCK+G M DA      M E+  + +VV Y+ LID Y +   M+ A  V E M
Sbjct: 336 TFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAM 395

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  ISPN+            +G    A  L D M   GI  D
Sbjct: 396 AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 438



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    +D A K F     R + PDI T+NT+I G C + +L +A  + + +    L P+
Sbjct: 166 LVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPS 225

Query: 62  SITFTILIDAFCKE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
             T+  LID +CK+   G M    M+  +M+E G     VT+  LI+GY K+ N  +A  
Sbjct: 226 VATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVR 285

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           V+EEM +  I+ ++             G+  E ++L + M   G+ P+
Sbjct: 286 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 15/160 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+D  LK   ++ + G+ P  +T+  +I GYC  +    AV++FE++    +  + +T+ 
Sbjct: 247 HVDMLLK---EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++++   +  +M + G   N +T+ C++ G+ K   M  A D  + M E 
Sbjct: 304 SLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTER 363

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N+ P++             G+  +AM + ++M + GI P+
Sbjct: 364 NVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 4/145 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A  L  ++ ++G+E D++TYN +I   C    + +AV+L ++++ V L+PN +T+  +I
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC +G +  A  + ++M +   +ANVVTY+  I  + +   M  A D+  EM +  + 
Sbjct: 482 QGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541

Query: 130 PNIAGRPTEAMQLYDSMLRNGIMPD 154
           PN  G   E ++  + M+  G  PD
Sbjct: 542 PN--GITYETIK--EGMMEKGYTPD 562



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ +   +  +G+ P++ TYN +I G+        A  L +++    ++ + +T+ +
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A C +G +  A  +  +M E G + N +TY+ +I G+    N+KSA+++   M +  
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              N+             G+  EA  L + ML   ++P+G+   T+ +
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKE 552



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P   + N ++ G     R+D A + F      ++ P+  TF  +I   C+ G++  A  
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV---YEEMCENNISP 130
           +   +   G   +V TY+ LIDGY K     + + V    +EM E  ISP
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISP 262


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P+I TY  ++ G C  +++ EA  L + ++    +PN I +  LID FCK G++D+A M
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F+KM E+G   NV TYS LID  FK + +  A  V   M EN+ +PN+           
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
             G+  EA +L   M   G  P+ +  + + D     +G  + C+
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID-GFGKAGKVDKCL 796



 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A  +  ++  +G  PD  TY+ +I   C+ +++D A  LFE++    + P+  T+TI
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G +  A   F +M+  G   NVVTY+ LI  Y K++ M SA +++E M    
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             PN+            +G+  +A Q+Y  M  N  +PD  +   + D N++
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  +F ++++RG  P++ TY+++I       RLD A+++  ++      PN I +T 
Sbjct: 687 LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK G+ D+A  + S M EKG   NVVTY+ +IDG+ K+  +    ++  +M    
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806

Query: 128 ISPNI------------AGRPTEAMQLYDSM 146
            +PN             AG   +A QL D M
Sbjct: 807 CAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L     +D A  LF ++    + PD+ TY  +I  +C +  L +A + F+++      P
Sbjct: 489 LLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP 548

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+T LI A+ K  +M  A  +F  ML +G   NVVTY+ LIDG+ KS  ++ A  +Y
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIY 608

Query: 121 EEMCENNISPNI 132
             M  N   P++
Sbjct: 609 ARMRGNADIPDV 620



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L   ++  G EP+ I Y+ +I G+C + +LDEA  +F K++     PN
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LID   K+ R+D A  + S+MLE     NV+ Y+ +IDG  K      A+ +  
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M E    PN+            AG+  + ++L   M   G  P+ +    L ++
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINH 820



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 28/184 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A K F ++   G  P+++TY  +I  Y    ++  A +LFE +      PN +T+T 
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 68  LIDAFCKEGRMDDATMMFSKM--------------LEKG--PKANVVTYSCLIDGYFKSQ 111
           LID  CK G+++ A  ++++M              ++ G     N+ TY  L+DG  K+ 
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 112 NMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLS 159
            +K A D+ + M      PN              G+  EA  ++  M   G  P+    S
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 160 TLAD 163
           +L D
Sbjct: 711 SLID 714



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD ALK+  ++ +    P++I Y  +I G C + + DEA +L   +      PN
Sbjct: 716 LFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPN 775

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID F K G++D    +  +M  KG   N VTY  LI+    +  +  A  + +
Sbjct: 776 VVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLD 835

Query: 122 EMCENNISPNIAG 134
           EM +     ++AG
Sbjct: 836 EMKQTYWPKHMAG 848



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYC------SLNRLDEAVQLFEKLTCVQLKPNSIT 64
           A KL  ++ D G +P  + YN +I G C      SL+ L+ A + + ++    +  N + 
Sbjct: 388 AYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVN 447

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            + L    C  G+ + A  +  +M+ KG   +  TYS +I     +  + +AF ++EEM 
Sbjct: 448 VSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMK 507

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            N++ P++             G   +A + +D M+R+G  P+ +  + L    L++
Sbjct: 508 SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A K +G++ D  +  + +  + +    C   + ++A  +  ++      P++ T++ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   ++D+A ++F +M       +V TY+ LID + K   ++ A   ++EM  + 
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            A + + A +L++ ML  G +P+ +  + L D + +S   ++ C
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 14/150 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L   + ++G  P+++TY  +I G+    ++D+ ++L  ++      PN +T+ +L
Sbjct: 758 DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +DDA  +  +M +     ++  Y  +I+G+  ++    +  + +E+ EN  
Sbjct: 818 INHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF--NREFIISLGLLDEIAENVA 875

Query: 129 SPNI------------AGRPTEAMQLYDSM 146
            P I            AGR   A++L+  M
Sbjct: 876 VPIIPAYRILIDSFCKAGRLELALELHKXM 905



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LI++C      + AL+  G+L D G +P  +TYN ++  +   +RLD A  +  +++  
Sbjct: 202 VLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDS 261

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
               +  T    +   CK GR  +A  +  K   +  K + V Y+ +I G  ++   + A
Sbjct: 262 GFNMDGYTLGCFVHLLCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEA 318

Query: 117 FDVYEEMCENNISPNIA 133
            D    M  ++  PN+ 
Sbjct: 319 MDFLSRMRSSSCIPNVV 335



 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+    ++      P+++TY  ++CG     +L    ++   +      P+   F  
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNS 374

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------AFDVYE 121
           LI A+C+ G    A  +  KM + G +   V Y+ LI G   ++ + S      A   Y 
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM + ++  N             AG+  +A  +   M+  G +PD
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479



 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A  +  +++D G   D  T    +   C   R  EA+ L EK    + K +++ +T
Sbjct: 247 RLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEK---EEFKLDTVIYT 303

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
            +I   C+    ++A    S+M       NVVTY  L+ G  + + +
Sbjct: 304 QMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQL 350



 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/106 (20%), Positives = 49/106 (46%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D + Y  +I G C  +  +EA+    ++      PN +T+ IL+    ++ ++     + 
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRIL 357

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           S M+ +G   +   ++ LI  Y +S +   A+ + ++M +    P 
Sbjct: 358 SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPG 403


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P+I TY  ++ G C  +++ EA  L + ++    +PN I +  LID FCK G++D+A M
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F+KM E+G   NV TYS LID  FK + +  A  V   M EN+ +PN+           
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
             G+  EA +L   M   G  P+ +  + + D     +G  + C+
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID-GFGKAGKVDKCL 796



 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A  +  ++  +G  PD  TY+ +I   C+ +++D A  LFE++    + P+  T+TI
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G +  A   F +M+  G   NVVTY+ LI  Y K++ M SA +++E M    
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             PN+            +G+  +A Q+Y  M  N  +PD  +   + D N++
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632



 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  +F ++++RG  P++ TY+++I       RLD A+++  ++      PN I +T 
Sbjct: 687 LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK G+ D+A  + S M EKG   NVVTY+ +IDG+ K+  +    ++  +M    
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806

Query: 128 ISPNI------------AGRPTEAMQLYDSM 146
            +PN             AG   +A QL D M
Sbjct: 807 CAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L     +D A  LF ++    + PD+ TY  +I  +C +  L +A + F+++      P
Sbjct: 489 LLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP 548

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+T LI A+ K  +M  A  +F  ML +G   NVVTY+ LIDG+ KS  ++ A  +Y
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIY 608

Query: 121 EEMCENNISPNI 132
             M  N   P++
Sbjct: 609 ARMRGNADIPDV 620



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L   ++  G EP+ I Y+ +I G+C + +LDEA  +F K++     PN
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LID   K+ R+D A  + S+MLE     NV+ Y+ +IDG  K      A+ +  
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M E    PN+            AG+  + ++L   M   G  P+ +    L ++
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINH 820



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 28/184 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A K F ++   G  P+++TY  +I  Y    ++  A +LFE +      PN +T+T 
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 68  LIDAFCKEGRMDDATMMFSKM--------------LEKG--PKANVVTYSCLIDGYFKSQ 111
           LID  CK G+++ A  ++++M              ++ G     N+ TY  L+DG  K+ 
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 112 NMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLS 159
            +K A D+ + M      PN              G+  EA  ++  M   G  P+    S
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 160 TLAD 163
           +L D
Sbjct: 711 SLID 714



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD ALK+  ++ +    P++I Y  +I G C + + DEA +L   +      PN
Sbjct: 716 LFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPN 775

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID F K G++D    +  +M  KG   N VTY  LI+    +  +  A  + +
Sbjct: 776 VVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLD 835

Query: 122 EMCENNISPNIAG 134
           EM +     ++AG
Sbjct: 836 EMKQTYWPKHMAG 848



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYC------SLNRLDEAVQLFEKLTCVQLKPNSIT 64
           A KL  ++ D G +P  + YN +I G C      SL+ L+ A + + ++    +  N + 
Sbjct: 388 AYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVN 447

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            + L    C  G+ + A  +  +M+ KG   +  TYS +I     +  + +AF ++EEM 
Sbjct: 448 VSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMK 507

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            N++ P++             G   +A + +D M+R+G  P+ +  + L    L++
Sbjct: 508 SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A K +G++ D  +  + +  + +    C   + ++A  +  ++      P++ T++ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   ++D+A ++F +M       +V TY+ LID + K   ++ A   ++EM  + 
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            A + + A +L++ ML  G +P+ +  + L D + +S   ++ C
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 14/150 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L   + ++G  P+++TY  +I G+    ++D+ ++L  ++      PN +T+ +L
Sbjct: 758 DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +DDA  +  +M +     ++  Y  +I+G+  ++    +  + +E+ EN  
Sbjct: 818 INHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF--NREFIISLGLLDEIAENVA 875

Query: 129 SPNI------------AGRPTEAMQLYDSM 146
            P I            AGR   A++L+  M
Sbjct: 876 VPIIPAYRILIDSFCKAGRLELALELHKEM 905



 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LI++C      + AL+  G+L D G +P  +TYN ++  +   +RLD A  +  +++  
Sbjct: 202 VLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDS 261

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
               +  T    +   CK GR  +A  +  K   +  K + V Y+ +I G  ++   + A
Sbjct: 262 GFNMDGYTLGCFVHLLCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEA 318

Query: 117 FDVYEEMCENNISPNIA 133
            D    M  ++  PN+ 
Sbjct: 319 MDFLSRMRSSSCIPNVV 335



 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+    ++      P+++TY  ++CG     +L    ++   +      P+   F  
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNS 374

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------AFDVYE 121
           LI A+C+ G    A  +  KM + G +   V Y+ LI G   ++ + S      A   Y 
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM + ++  N             AG+  +A  +   M+  G +PD
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479



 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A  +  +++D G   D  T    +   C   R  EA+ L EK    + K +++ +T
Sbjct: 247 RLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEK---EEFKLDTVIYT 303

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
            +I   C+    ++A    S+M       NVVTY  L+ G  + + +
Sbjct: 304 QMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQL 350



 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/106 (20%), Positives = 49/106 (46%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D + Y  +I G C  +  +EA+    ++      PN +T+ IL+    ++ ++     + 
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRIL 357

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           S M+ +G   +   ++ LI  Y +S +   A+ + ++M +    P 
Sbjct: 358 SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPG 403



 Score = 35.8 bits (81), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/117 (18%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLK-PNSITFTIL 68
           +L L  ++ +    P I  Y  +I  +C   RL+ A++L +++ +C      +   ++ L
Sbjct: 863 SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSL 922

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           I++     ++D A  +++ M+++G    +  +  L+ G  +    + A  + + +C+
Sbjct: 923 IESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQ 979


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 12/154 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  + I +N+II  +C   R+ E+ +LF+ +  + +KPN IT++ L
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+AT + S M   G K + VTY+ LI+GY +   M  A  +++EM  + +
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNG 150
           SPNI              R   A +LY  + ++G
Sbjct: 578 SPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 74/117 (63%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++P++ITY+T+I GYC   ++DEA +L   +  V +KP+ +
Sbjct: 488 KEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCV 547

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           T+  LI+ +C+  RMDDA  +F +M+  G   N++TY+ ++ G F ++   +A ++Y
Sbjct: 548 TYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 604



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGLEPDI TY T++ GY +   L E   L + +    + P+   F ILI 
Sbjct: 320 ARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILIC 379

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+ ++D+A ++FSKM + G   NVVTY  +I    KS ++  A   +E+M +  ++P
Sbjct: 380 AYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439

Query: 131 NI-----------------------------------------------AGRPTEAMQLY 143
           NI                                                GR  E+ +L+
Sbjct: 440 NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLF 499

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ P+ +  STL D
Sbjct: 500 DLMVRIGVKPNVITYSTLID 519



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +D A+  F Q+ D GL P+II Y ++I   C  ++ D+A +L  ++    +  
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL 474

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+I F  +I + CKEGR+ ++  +F  M+  G K NV+TYS LIDGY  +  M  A  + 
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
             M    + P+       I G     R  +A+ L+  M+ +G+ P+
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 11  ALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           AL+L   + D    G  PD+++Y T+I G+      D+A   + ++   ++ P+ +T++ 
Sbjct: 177 ALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I A CK   MD A  + + M++ G   N +TY+ ++ GY  S+  K A    ++M  + 
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG 296

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + P++             GR TEA +++DSM + G+ PD
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE   D A   + ++ DR + PD++TY++II   C    +D+A+++   +    + PN
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPN 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++  +C   +  +A     KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFD 325

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P+IA            G   E   L D M+RNGI PD  + + L
Sbjct: 326 SMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNIL 377



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KL   +   G++PD +TYNT+I GYC ++R+D+A+ LF+++    + PN IT+ I
Sbjct: 527 MDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 586

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++       R   A  ++  + + G +  + TY+ ++ G  K+     A  +++ +C  +
Sbjct: 587 ILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 646

Query: 128 I-----SPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           +     + NI        GR  EA  L+ +   NG++P+
Sbjct: 647 LQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ P+ +TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 241 LCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD 300

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  +F  M ++G + ++ TY  L+ GY     +     + +
Sbjct: 301 VVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLD 360

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPD 154
            M  N I P     NI         +  EAM ++  M ++G+ P+
Sbjct: 361 LMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPN 405



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++   GL P+++TY  +I   C    +D+A+  FE++    L PN I
Sbjct: 383 KQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNII 442

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI + C   + D A  +  +ML++G   N + ++ +I  + K   +  +  +++ M
Sbjct: 443 VYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLM 502

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + PN+            AG+  EA +L  SM   G+ PD +  +TL
Sbjct: 503 VRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL-FEKLTCVQLKPNSITF 65
            LD      G +  +G   + IT+  ++ G C+  R  +A+ +   ++T +   P+  + 
Sbjct: 102 RLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSC 161

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           TIL+   C E R  +A  +   M +    G   +VV+Y+ +I+G+FK  +   A+  Y E
Sbjct: 162 TILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHE 221

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           M +  ISP++    +            +AM++  +M++NG+MP+
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPN 265



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+    PD+ +   ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSY 199

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I+ F KEG  D A   + +ML++    +VVTYS +I    K Q M  A +V   M +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK 259

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N + PN             + +P EA+     M  +G+ PD +  ++L DY  ++  S E
Sbjct: 260 NGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTE 319



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T  G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 599 AAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 658

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            A  K GR D+A  +F      G   N  TY  + +
Sbjct: 659 GALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694



 Score = 39.7 bits (91), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I     + R DEA  LF   +   L PN  T+ ++
Sbjct: 633 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 692

Query: 69  IDAFCKEGRMDDATMMFSKMLEKG 92
            +    +G +++   +F  M + G
Sbjct: 693 AENIIGQGLLEELDQLFFSMEDNG 716



 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT---CVQLKPNSITFTI 67
           A  +F +L  RG    I   N  +    + +    AV  + ++      ++ P   T+ I
Sbjct: 34  ARHVFDELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGAGKVTPTVHTYGI 92

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C+ GR+D        +++KG +   +T++ L+ G    +    A D V   M E 
Sbjct: 93  LIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 152

Query: 127 NISPNI 132
           +  P++
Sbjct: 153 SCMPDV 158


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P+I TY  ++ G C  +++ EA  L + ++    +PN I +  LID FCK G++D+A M
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F+KM E+G   NV TYS LID  FK + +  A  V   M EN+ +PN+           
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
             G+  EA +L   M   G  P+ +  + + D     +G  + C+
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID-GFGKAGKVDKCL 796



 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A  +  ++  +G  PD  TY+ +I   C+ +++D A  LFE++    + P+  T+TI
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G +  A   F +M+  G   NVVTY+ LI  Y K++ M SA +++E M    
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             PN+            +G+  +A Q+Y  M  N  +PD  +   + D N++
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  +F ++++RG  P++ TY+++I       RLD A+++  ++      PN I +T 
Sbjct: 687 LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK G+ D+A  + S M EKG   NVVTY+ +IDG+ K+  +    ++  +M    
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806

Query: 128 ISPNI------------AGRPTEAMQLYDSM 146
            +PN             AG   +A QL D M
Sbjct: 807 CAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L     +D A  LF ++    + PD+ TY  +I  +C +  L +A + F+++      P
Sbjct: 489 LLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP 548

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+T LI A+ K  +M  A  +F  ML +G   NVVTY+ LIDG+ KS  ++ A  +Y
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIY 608

Query: 121 EEMCENNISPNI 132
             M  N   P++
Sbjct: 609 ARMRGNADIPDV 620



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L   ++  G EP+ I Y+ +I G+C + +LDEA  +F K++     PN
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LID   K+ R+D A  + S+MLE     NV+ Y+ +IDG  K      A+ +  
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M E    PN+            AG+  + ++L   M   G  P+ +    L ++
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINH 820



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 28/184 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A K F ++   G  P+++TY  +I  Y    ++  A +LFE +      PN +T+T 
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 68  LIDAFCKEGRMDDATMMFSKM--------------LEKG--PKANVVTYSCLIDGYFKSQ 111
           LID  CK G+++ A  ++++M              ++ G     N+ TY  L+DG  K+ 
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 112 NMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLS 159
            +K A D+ + M      PN              G+  EA  ++  M   G  P+    S
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 160 TLAD 163
           +L D
Sbjct: 711 SLID 714



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD ALK+  ++ +    P++I Y  +I G C + + DEA +L   +      PN
Sbjct: 716 LFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPN 775

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID F K G++D    +  +M  KG   N VTY  LI+    +  +  A  + +
Sbjct: 776 VVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLD 835

Query: 122 EMCENNISPNIAG 134
           EM +     ++AG
Sbjct: 836 EMKQTYWPKHMAG 848



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYC------SLNRLDEAVQLFEKLTCVQLKPNSIT 64
           A KL  ++ D G +P  + YN +I G C      SL+ L+ A + + ++    +  N + 
Sbjct: 388 AYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVN 447

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            + L    C  G+ + A  +  +M+ KG   +  TYS +I     +  + +AF ++EEM 
Sbjct: 448 VSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMK 507

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            N++ P++             G   +A + +D M+R+G  P+ +  + L    L++
Sbjct: 508 SNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 87/180 (48%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A K +G++ D  +  + +  + +    C   + ++A  +  ++      P++ T++ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   ++D+A ++F +M       +V TY+ LID + K   ++ A   ++EM  + 
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            A + + A +L++ ML  G +P+ +  + L D + +S   ++ C
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605



 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 14/150 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L   + ++G  P+++TY  +I G+    ++D+ ++L  ++      PN +T+ +L
Sbjct: 758 DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +DDA  +  +M +     ++  Y  +I+G+  ++    +  + +E+ EN  
Sbjct: 818 INHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF--NREFIISLGLLDEIAENVA 875

Query: 129 SPNI------------AGRPTEAMQLYDSM 146
            P I            AGR   A++L+  M
Sbjct: 876 VPIIPAYRILIDSFCKAGRLELALELHKEM 905



 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LI++C      + AL+  G+L D G +P  +TYN ++  +   +RLD A  +  +++  
Sbjct: 202 VLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDS 261

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
               +  T    +   CK GR  +A  +  K   +  K + V Y+ +I G  ++   + A
Sbjct: 262 GFNMDGYTLGCFVHLLCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEA 318

Query: 117 FDVYEEMCENNISPNIA 133
            D    M  ++  PN+ 
Sbjct: 319 MDFLSRMRSSSCIPNVV 335



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+    ++      P+++TY  ++CG     +L    ++   +      P+   F  
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNS 374

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------AFDVYE 121
           LI A+C+ G    A  +  KM + G +   V Y+ LI G   ++ + S      A   Y 
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM + ++  N             AG+  +A  +   M+  G +PD
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479



 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A  +  +++D G   D  T    +   C   R  EA+ L EK    + K +++ +T
Sbjct: 247 RLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEK---EEFKLDTVIYT 303

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
            +I   C+    ++A    S+M       NVVTY  L+ G  + + +
Sbjct: 304 QMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQL 350



 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/106 (20%), Positives = 49/106 (46%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D + Y  +I G C  +  +EA+    ++      PN +T+ IL+    ++ ++     + 
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRIL 357

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           S M+ +G   +   ++ LI  Y +S +   A+ + ++M +    P 
Sbjct: 358 SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPG 403



 Score = 35.8 bits (81), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/117 (18%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLK-PNSITFTIL 68
           +L L  ++ +    P I  Y  +I  +C   RL+ A++L +++ +C      +   ++ L
Sbjct: 863 SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSL 922

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           I++     ++D A  +++ M+++G    +  +  L+ G  +    + A  + + +C+
Sbjct: 923 IESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQ 979


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 79/122 (64%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+LF  +T RG+  D++ YN++I G CS+ +  EA +L   +    + P+  TF IL+D
Sbjct: 214 ALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVD 273

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CKEGR+ +A  +F+ M+++G K ++VTY+ L++G+  S N+  A +++  M +  + P
Sbjct: 274 ALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEP 333

Query: 131 NI 132
           ++
Sbjct: 334 DV 335



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 83/143 (58%), Gaps = 9/143 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A +LF ++  RGLEPD++ YN +I GYC ++ +DEA+ LF+++ C  L PN  T+ 
Sbjct: 315 NVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYN 374

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK GRM     +  +M ++G   ++VTY+  +D + KS+  + A  ++ ++ + 
Sbjct: 375 SLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ- 433

Query: 127 NISPNIAGRPTEAMQLYDSMLRN 149
            I P+          +YD ++ N
Sbjct: 434 GIWPD--------FYMYDVIVEN 448



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 13/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F  +  RG +PDI+TYN ++ G+C  N + EA +LF ++    L+P+
Sbjct: 275 LCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LI+ +CK   +D+A ++F ++  K    N+ TY+ LIDG  K   M    ++ +
Sbjct: 335 VLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVD 394

Query: 122 EMCENNISPNIA-----------GRPTE-AMQLYDSMLRNGIMPD 154
           EMC+   SP+I             +P E A+ L+  +++ GI PD
Sbjct: 395 EMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPD 438



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           + HL  A  L G +   G +P+++T+NT+I G+C    + +A+     L       +  +
Sbjct: 103 QAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFS 162

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI+  CK G+  DA  +  KM E   + N++TYS +IDG  K + +  A  ++  + 
Sbjct: 163 YGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVT 222

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              I  ++             G+  EA +L   M+R  I PD    + L D
Sbjct: 223 SRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVD 273



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +++  H   A+ LF QL  +G+ P I T   +I  YC    L  A  L   +  +  +PN
Sbjct: 65  IVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPN 124

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI+ FC  G +  A      ++ KG   +  +Y  LI+G  K+   + A  + +
Sbjct: 125 MVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQ 184

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           +M E+ + PN+    T    + D + ++ ++ D L L +L 
Sbjct: 185 KMEEDLVRPNLITYST----VIDGLCKDRLIADALRLFSLV 221



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDA 71
           +L  ++ DRG  PDI+TYN  +  +C     ++A+ LF ++  VQ + P+   + ++++ 
Sbjct: 391 ELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQI--VQGIWPDFYMYDVIVEN 448

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           FCK  ++  A      +L  G   NV TY+ +I+   K  +   A  +  +M +N+  P+
Sbjct: 449 FCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPD 508



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A+ LF Q+  +G+ PD   Y+ I+  +C   +L  A +  + L      PN  T+TI+
Sbjct: 422 EKAISLFRQIV-QGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIM 480

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+A CK+   D+A  + SKM +     + VT+  +I    +      A  +  EM E  +
Sbjct: 481 INALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGL 540



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 26/175 (14%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  L  F ++  +   P I  ++ ++     +     A+ LF +L    + P+  T TI
Sbjct: 36  VDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTI 95

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY-----------FKSQNMKSA 116
           LI+ +C +  +  A  +   +L+ G + N+VT++ LI+G+           F+   M   
Sbjct: 96  LINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKG 155

Query: 117 FDVYE--------EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + + E         +C+N       G+  +A+QL   M  + + P+ +  ST+ D
Sbjct: 156 YPLDEFSYGSLINGLCKN-------GQTRDALQLLQKMEEDLVRPNLITYSTVID 203



 Score = 38.9 bits (89), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +    L   G  P++ TY  +I   C     DEA+ L  K+      P+++TF  
Sbjct: 455 LKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFET 514

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG 92
           +I A  +    D A  +  +M+E+G
Sbjct: 515 IIGALQERNETDKAEKLRLEMIERG 539


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+++  +  A  ++ ++   G  PD+ITY+T+I G+    + D+A +LFE +     +PN
Sbjct: 202 LMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPN 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  L+   CKE + D+A  +F KM+E+G   + VTY+ L+ G+     ++ A +V++
Sbjct: 262 AVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFD 321

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      P++            AG+P EA QL+  M+     PD +  + + D
Sbjct: 322 EMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMID 375



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 98/173 (56%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   D A +LF ++ +RG +PD +TY T++ G+C++ ++++AV++F+++      P+
Sbjct: 272 LCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 331

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L+  F + G+  +A  +F  M+ +  K + V+++ +IDG  K++ +  A +V+E
Sbjct: 332 VVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFE 391

Query: 122 EMCENN-ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +++  SP++              R +EAM+++  + R  + PD    + L
Sbjct: 392 RMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVL 444



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   +  A  +F  + ++R + PD+++Y+ +I G+C ++ L  A +L++++  +   P
Sbjct: 131 LCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVP 190

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  T+   ++   ++GR+ DA  ++ +M+  G   +V+TYS LI G+  ++    A +++
Sbjct: 191 NVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELF 250

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M      PN               +P EA +L+  M+  G  PD +  +TL
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTL 303



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 16/189 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL--TCVQLK 59
           L K   +D+AL L   +  RG  PD+ T++ +I   C  +++ EA +  + +  T     
Sbjct: 59  LCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRA 118

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +  ++  L+++ CK  ++  A  +FS M+ E+    +VV+YS LIDG+ K   +  A  
Sbjct: 119 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEK 178

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YN 165
           +Y++M + N  PN+             GR  +A  +Y+ M+  G  PD +  STL   ++
Sbjct: 179 LYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFS 238

Query: 166 LQSSGSQEH 174
           L     Q H
Sbjct: 239 LARKHDQAH 247



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   LD A+++F ++  D G  PD++TYN++I G C   RL EA+++F+++  ++L P
Sbjct: 377 LSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSP 436

Query: 61  NSITFTILIDAFCKEGR 77
           +   F +L++A    G 
Sbjct: 437 DPHAFNVLLEAMYAAGH 453


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A +L   +   G+ P++I+YNT+I G+C   R DEA QL + +  V LKP+
Sbjct: 559 LCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPD 618

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF------------- 108
            I++  L+  +CK GR+D+A  +F +ML KG     VTYS ++ G F             
Sbjct: 619 LISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYL 678

Query: 109 ----------------------KSQNMKSAFDVYEEMCENNISPNI------------AG 134
                                 K+  +  AF +++ +C  ++ PNI             G
Sbjct: 679 NMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGG 738

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  +AM L+ S+  +G++P+
Sbjct: 739 RKKDAMDLFASIPSHGLVPN 758



 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 16/177 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +   + D+G++PD++TYNTII G C    +D A  + + +    +KP+
Sbjct: 244 LCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPD 303

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID  CK   +D A  +   M++K  K ++ TY+CLI GY  +   K      E
Sbjct: 304 VVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLE 363

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD----GLLLSTLA 162
           EM    + P++             G+ TEA +++  M+R GI P+    G+LL   A
Sbjct: 364 EMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYA 420



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +   + D+G++ D++TY+TII G C    +D A  + + +    +KP+
Sbjct: 209 LCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPD 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID  CK   +D A  +   M++KG K +VVTY+ +IDG  K+Q +  A  V +
Sbjct: 269 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQ 328

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M + ++ P+I             G   E ++  + M   G+ PD +  S L DY
Sbjct: 329 HMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDY 383



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 19/174 (10%)

Query: 7   HLDAALKLFGQLTD-------RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           H  AA      LTD        G+ P+   +N ++C Y     +DEA+ +F +++   L 
Sbjct: 417 HGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLS 476

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+ +T+ ILIDA CK GR+DDA + F++M+  G   N V ++ L+ G       + A ++
Sbjct: 477 PDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEEL 536

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + EM +  + PN+             G+   A +L DSM R G+ P+ +  +TL
Sbjct: 537 FFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTL 590



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +   + D+ ++PDI TYN +I GY S     E V+  E++    L P+
Sbjct: 314 LCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPD 373

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+++L+D  CK G+  +A  +F  M+ KG K NV  Y  L+ GY     +    D+ +
Sbjct: 374 VVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLD 433

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M  N ISPN                  EAM ++  M ++G+ PD +    L D
Sbjct: 434 LMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILID 487



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F +++  GL PD++TY  +I   C L R+D+AV  F ++    + PNS+
Sbjct: 456 KKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSV 515

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  L+   C   R + A  +F +M ++G + NVV ++ ++        +  A  + + M
Sbjct: 516 VFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSM 575

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + PN+            AGR  EA QL D M+  G+ PD +   TL
Sbjct: 576 ERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTL 625



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           L  E  ++ AL+L   + + G     P+++TYNTII G C    +D A  + + +    +
Sbjct: 171 LCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGV 230

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           K + +T++ +ID  CK   +D A  +   M++KG K +VVTY+ +IDG  K+Q +  A  
Sbjct: 231 KLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEG 290

Query: 119 VYEEMCENNISPNIA 133
           V + M +  + P++ 
Sbjct: 291 VLQHMIDKGVKPDVV 305



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK F Q+ + G+ P+ + +N+++ G C+++R ++A +LF ++    ++PN + F  +
Sbjct: 497 DAVLK-FNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTI 555

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C EG++  A  +   M   G + NV++Y+ LI G+  +     A  + + M    +
Sbjct: 556 MCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGL 615

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++             GR   A  L+  MLR G+ P  +  ST+
Sbjct: 616 KPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTI 660



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+  +   G + DI TYN I+ G C  N +DEA ++F+ L    L+PN ITFTI+ID
Sbjct: 673 AKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMID 732

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K GR  DA  +F+ +   G   NVVTY  ++    +   +    +++  M ++  +P
Sbjct: 733 VLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTP 792

Query: 131 NIAGRPTEAMQLYDSMLRNG-IMPDGLLLSTLADYNLQSSGS 171
           +          +  S+L  G IM  G  LS + + N     S
Sbjct: 793 D----SVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEAS 830



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +  +G++P++  Y  ++ GY +   + +   L + +    + PN+  F I++ 
Sbjct: 393 ARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLC 452

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+  +D+A  +FS+M + G   +VVTY  LID   K   +  A   + +M  + ++P
Sbjct: 453 AYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTP 512

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N               R  +A +L+  M   G+ P+ +  +T+
Sbjct: 513 NSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTI 555



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYN----TIICGYCSLNRLDEAVQLFEKLTCV---QLKP 60
           +D ALKLF +L        +  +N     +    CS +  + AV LF ++      +++P
Sbjct: 30  IDDALKLFDELLPHARPASVRAFNHLLNVVARARCS-STSELAVSLFNRMARACSNKVRP 88

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV- 119
           +  T++IL   FC+ GR++     F  +L+ G + N V  + L++G   ++ +  A D+ 
Sbjct: 89  DLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDIL 148

Query: 120 YEEMCENNISPNIAG------------RPTEAMQLYDSMLRNG 150
              M E    PN+              R  EA++L  +M  +G
Sbjct: 149 LRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDG 191



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F  L  + L P+IIT+  +I       R  +A+ LF  +    L PN +T+ I
Sbjct: 705 VDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCI 764

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    +EG +D+   +F  M + G   + V  + +I        +  A     ++ E N
Sbjct: 765 MMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMN 824

Query: 128 IS 129
            S
Sbjct: 825 FS 826


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL L  ++    +E +++ YNTII G C    +D+A  LF K+    +KP+
Sbjct: 231 LCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   C  GR  DA+ + S M+E+    NVVT++ LID + K   +  A  +++
Sbjct: 291 VFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 350

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + +I PNI              R  EA Q++  M+    +PD +  +TL
Sbjct: 351 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402



 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 79/129 (61%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A KLF ++  R ++P+I+TYN++I G+C  +RLDEA Q+F  +      P+ +
Sbjct: 338 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 397

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FCK  R+++   +F +M ++G   N VTY+ LI G F++ +   A  ++++M
Sbjct: 398 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 457

Query: 124 CENNISPNI 132
             + + P+I
Sbjct: 458 VSDGVPPDI 466



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A ++F  +  +   PD++TYNT+I G+C   R++E ++LF +++   L  N++T+ 
Sbjct: 376 RLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 435

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI    + G  D A  +F KM+  G   +++TYS L+DG  K   ++ A  V+E + ++
Sbjct: 436 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 495

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PNI            AG+  +   L+ S+   G+ P+ ++ +T+
Sbjct: 496 KMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTM 542



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G +PD +T+NT+I G    N+  EAV L +++     +P+ 
Sbjct: 162 CHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL 221

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  +++  CK G +D A  +  KM +   +ANVV Y+ +IDG  K ++M  AFD++ +
Sbjct: 222 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNK 281

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P++             GR ++A +L   M+   I P+ +  ++L D
Sbjct: 282 METKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLID 334



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D A  LF ++  +G++PD+ TYN++I   C+  R  +A +L   +   ++ PN
Sbjct: 266 LCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPN 325

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
            +TF  LIDAF KEG                                   R+D+A  +F+
Sbjct: 326 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 385

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ K    +VVTY+ LI G+ K++ ++   +++ EM +  +  N             AG
Sbjct: 386 LMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 445

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               A +++  M+ +G+ PD +  S L D
Sbjct: 446 DCDMAQKIFKKMVSDGVPPDIITYSILLD 474



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 74/123 (60%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F ++   G+ PDIITY+ ++ G C   +L++A+ +FE L   +++PN  T+ I+
Sbjct: 448 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIM 507

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G+++D   +F  +  KG K NV+ Y+ +I G+ +    + A  ++ EM E+  
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 567

Query: 129 SPN 131
            P+
Sbjct: 568 LPD 570



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  ++LF +++ RGL  + +TYNT+I G       D A ++F+K+    + P+ I
Sbjct: 408 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 467

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  CK G+++ A ++F  + +   + N+ TY+ +I+G  K+  ++  +D++  +
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + PN+             G   EA  L+  M  +G +PD    +TL    L+
Sbjct: 528 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLR 583



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  LD A+ LFG++      P II ++ ++     +N+ D  + L E++  + +  N 
Sbjct: 57  LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++IL++ FC+  ++  A  +  KM++ G + ++VT S L++GY   + +  A  + ++
Sbjct: 117 YTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 176

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M E    P+            +  + +EA+ L D M+  G  PD     T+ +
Sbjct: 177 MVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 229



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 66/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL +F  L    +EP+I TYN +I G C   ++++   LF  L+   +KPN
Sbjct: 476 LCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T +I  FC++G  ++A  +F +M E G   +   Y+ LI    +  +  ++ ++ +
Sbjct: 536 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIK 595

Query: 122 EM 123
           EM
Sbjct: 596 EM 597



 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++    LF  L+ +G++P++I Y T+I G+C     +EA  LF ++      P+S 
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSG 572

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            +  LI A  ++G    +  +  +M   G   +  T S +I+
Sbjct: 573 CYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 614


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 13/181 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K  +   AL ++  +   GL PD  T+N ++  +    R+D   +LFE++      PN
Sbjct: 99  FVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPN 158

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ILIDA CK G ++ A  +F  M  +G + N+ TY+ +IDG  KS ++  AF ++E
Sbjct: 159 VITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFE 218

Query: 122 EM-CENNISPNI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM  E  ++  +           +GR   A +L+  ML  G+ PD +  ++L  Y L  +
Sbjct: 219 EMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLV-YGLGVA 277

Query: 170 G 170
           G
Sbjct: 278 G 278



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 13/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D A  LF ++T  GL    + YN++I G     R D A +LF ++    L+P+
Sbjct: 204 LGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPD 263

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFT L+      GR  +A  +F +  + G   +V  Y+ LID   KS+ +  A++++ 
Sbjct: 264 HVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFG 323

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E+ E+ + P++            +GR  +A  L   M R G  PD  + +TL D  L+ S
Sbjct: 324 ELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLID-GLRKS 382

Query: 170 GSQEHC 175
           G  E  
Sbjct: 383 GRVEEA 388



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +    DAA KLF ++  +GL+PD +T+ +++ G     R  EA ++F++   V    +
Sbjct: 239 LGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALD 298

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + +LID  CK  R+D+A  +F ++ E G   +V T++ L+DG  KS  +  AF +  
Sbjct: 299 VNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLG 358

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M     +P++            +GR  EA QL   M   G  PD +  +TL D
Sbjct: 359 DMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLID 412



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 15/186 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A ++FG+L + GL PD+ T+N ++ G C   R+ +A  L   +      P+
Sbjct: 309 LCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPD 368

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LID   K GR+++A  +  +M   G + +VVTY+ LID   K   ++ A  ++E
Sbjct: 369 VTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFE 428

Query: 122 EMC----ENNISPN-------IAGRPTEAMQLYDSMLR---NGIM-PDGLLLSTLADYNL 166
           E+      N ++ N       +AGR  EA +L++ M +   +G++ PD +  +TL +   
Sbjct: 429 EISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGAR 488

Query: 167 QSSGSQ 172
           Q+  S+
Sbjct: 489 QAGLSE 494



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 13/157 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            YN++I  +       +A+ ++  +    L+P++ TF +L++AF K  R+D    +F +M
Sbjct: 91  AYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEM 150

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
             +    NV+TYS LID   K   ++ A  V+ +M      PNI            +G  
Sbjct: 151 QNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHV 210

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            +A  L++ M   G++   ++ ++L  + L  SG  +
Sbjct: 211 DKAFFLFEEMTSEGLVATRVVYNSLI-HGLGRSGRAD 246



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 15/160 (9%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L+P I  +  +  GY S   L+++V+  +++   +    +  +  LIDAF K G    A 
Sbjct: 52  LQPRI--FIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKAL 109

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            ++  M + G + +  T++ L++ + K++ + S + ++EEM   N SPN+          
Sbjct: 110 AVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAV 169

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
              G   +A++++  M   G  P+    +++ D  L  SG
Sbjct: 170 CKCGGVEKALKVFLDMKSRGCRPNIFTYTSMID-GLGKSG 208


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ +   + D+G+ PD  TYN +I GYCSL +L+EAV+L +K++   L+P+
Sbjct: 245 LCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPD 304

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+++LI  +CK GR  +A  +F  M+ KG K N   Y  L+ GY     +    D+ +
Sbjct: 305 VVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLD 364

Query: 122 EMCENNI-----SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  + I     + NI        G   +AM  +  M +NG+ PD +  ST+
Sbjct: 365 LMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 416



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSITF 65
           DA   +F ++ + G  PD+ +YN +I G C   +  EA++L   +T        PN +++
Sbjct: 144 DAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSY 203

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +ID F KEG +D A  +F +M+ +G   +VVTY+ LIDG  K+Q M  A  + + M +
Sbjct: 204 NTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFD 263

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
             + P+              G+  EA++L   M  +G+ PD +  S L  Y
Sbjct: 264 KGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQY 314



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 12/146 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ +RG+ PD I  NTI+   C   R+ EA   F+ +  + +KP+ +++  LID +C  G
Sbjct: 470 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVG 529

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-----ISPN 131
           +MD++     +M+  G + +  TY+ L++GYFK+  ++ A  +Y EM   +     I+ N
Sbjct: 530 KMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSN 589

Query: 132 I-------AGRPTEAMQLYDSMLRNG 150
           I       AGR   A +LY  M+  G
Sbjct: 590 IMLHGLFQAGRIVAARELYMKMVDRG 615



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 78/131 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A   F  +   G++PD+++YNT+I GYC + ++DE+++  +++  + L+P+
Sbjct: 490 LCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPD 549

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T+  L++ + K GR++DA  ++ +M  K  K   +T + ++ G F++  + +A ++Y 
Sbjct: 550 SWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYM 609

Query: 122 EMCENNISPNI 132
           +M +      I
Sbjct: 610 KMVDRGTQLRI 620



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 79/125 (63%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   + AA +L+ ++ DRG +  I TYNT++ G C  + +DEA+++FE L   + + +
Sbjct: 595 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 654

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF+I+I+A  K GR+D+A  +FS M+ +GP  +V+TYS +I  + +   ++ + +++ 
Sbjct: 655 VRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFL 714

Query: 122 EMCEN 126
            M +N
Sbjct: 715 SMEKN 719



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 15/166 (9%)

Query: 11  ALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           AL+L   +T  G     P++++YNT+I G+     +D+A  LF ++    L P+ +T+  
Sbjct: 181 ALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNS 240

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK   MD A  +   M +KG   +  TY+ +I GY     ++ A  + ++M  + 
Sbjct: 241 LIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSG 300

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++             GR  EA  ++DSM+R G  P+  +   L
Sbjct: 301 LQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHIL 346



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A+  F Q+   GL P+II++ ++I G CS+    +  +L  ++    + P
Sbjct: 419 ILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHP 478

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++I    ++D  CKEGR+ +A   F  ++  G K +VV+Y+ LIDGY     M  +    
Sbjct: 479 DAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQL 538

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           + M    + P+              GR  +A+ LY  M R  +
Sbjct: 539 DRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDV 581



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            +N +IC Y     +D+A+  F ++    L+P+ ++++ +I   CK GR++DA   F++M
Sbjct: 377 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM 436

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           + +G   N+++++ LI G       K   ++  EM    I P+              GR 
Sbjct: 437 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRV 496

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA   +D ++  G+ PD +  +TL D
Sbjct: 497 VEAQDFFDMVIHIGVKPDVVSYNTLID 523



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ++K   ++   GL PD  TYN+++ GY    R+++A+ L+ ++    +K  +IT  I
Sbjct: 531 MDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNI 590

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    + GR+  A  ++ KM+++G +  + TY+ ++ G  ++  +  A  ++E++    
Sbjct: 591 MLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE 650

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
              ++             GR  EA  L+ +M+  G +PD +  S +   +++
Sbjct: 651 FELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIE 702



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 63/122 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++F  L  +  E D+ T++ +I     + R+DEA  LF  +      P+ IT+++
Sbjct: 636 VDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSL 695

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I +  +EG ++++  +F  M + G  A+    + ++    +  +++ A     ++ E N
Sbjct: 696 MIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKN 755

Query: 128 IS 129
            S
Sbjct: 756 FS 757



 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 47/103 (45%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D A  LF  +  RG  PD+ITY+ +I  +     L+E+  LF  +       +
Sbjct: 665 LLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAAD 724

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           S    I++    ++G +  A    +K+ EK       T + LI
Sbjct: 725 SHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLI 767



 Score = 35.8 bits (81), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE----------AVQLFEKLTCVQLKP 60
           AL LF +L  +     +  +N+++     + R D           AV LF  +    +  
Sbjct: 33  ALNLFDELLPQARPASVHAFNSVLT---VVARADSSSSPRHSAALAVSLFNTMVRSGVNM 89

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-V 119
            +    ILI  FC  GR+D A   F+  L+ G +   VT + LI G         A D V
Sbjct: 90  MAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMV 149

Query: 120 YEEMCENNISPNI 132
           +  M E   +P++
Sbjct: 150 FRRMPELGYTPDV 162


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 47/210 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  AL LF ++  +G+ PDI TYN++I   C+L        L  ++   ++ PN
Sbjct: 171 LCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPN 230

Query: 62  SITFTILIDAFCKEGR-----------------------------------MDDATMMFS 86
            ++  I++DA CKEG+                                   MD+A  +F 
Sbjct: 231 VVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFD 290

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+  G   NVV+Y+ LI+GY K Q +  A  ++EEMC   + PN              G
Sbjct: 291 MMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVG 350

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           R  +A+ L++ M+  G +P+ +  S L DY
Sbjct: 351 RLQDAIALFNEMVACGQIPNLVTYSILLDY 380



 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 90/159 (56%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +   G   ++++YNT+I GYC + R+D+A+ LFE++   +L PN++T++ 
Sbjct: 282 MDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYST 341

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+ DA  +F++M+  G   N+VTYS L+D   K+  +  A  + + +  +N
Sbjct: 342 LIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSN 401

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + P++            AG    A  L+ ++   G+ PD
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPD 440



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 15/173 (8%)

Query: 6   CHL---DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL   D AL +  ++   G +PD  T+ T++ G C + ++ EA+ +F+K+     +PN 
Sbjct: 102 CHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNV 161

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  L++  CK+ ++ +A  +FS+M+ KG   ++ TY+ LI         K    +  E
Sbjct: 162 VTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE 221

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M ++ I PN+             G+ TEA  + D M++ G+ PD +  + L D
Sbjct: 222 MVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMD 274



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  ++   G+ PD+ T   +I  +C LNR+D A+ +  K+  +  +P++ TFT
Sbjct: 71  HYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFT 130

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+   C  G++ +A  +F KM+ +G + NVVTY  L++G  K + +  A +++ EM   
Sbjct: 131 TLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAK 190

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP+I    +                L + M+++ IMP+ + L+ + D
Sbjct: 191 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVD 239



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  + L P+ +TY+T+I G C + RL +A+ LF ++      PN +T++I
Sbjct: 317 IDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSI 376

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK  R+ +A  +   +       +V  Y+  IDG  ++ ++++A D++  +    
Sbjct: 377 LLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRG 436

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           + P++             G   EA +L+  M  NG + +G   +T+    LQ++ +  
Sbjct: 437 LQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSR 494



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ L   +    L+PD+  YN  I G C    L+ A  LF  L    L+P+
Sbjct: 381 LCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPD 440

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T  I+I   CK G +D+A+ +F +M E G   N  TY+ +  G  ++     A  + E
Sbjct: 441 VWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLE 500

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 501 EMLARGFSADVS 512



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL  F ++      P I  +  ++     +      + L +K+    + P+  T TI
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 96

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I++FC   R+D A  + +K+L+ G + +  T++ L+ G      +  A DV+++M    
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEG 156

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
             PN+              + TEA+ L+  M+  GI PD
Sbjct: 157 FQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPD 195


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ AL +F  +  +G+ PDI TYN++I G C+ ++  EA  L  ++  + + P+ +
Sbjct: 250 KDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIV 309

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF +L+D  CKEG++ +A  +   M E G + +VVTYS L+ GY     +  A  +++ M
Sbjct: 310 TFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAM 369

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 P++              R  EA QL++ M+  G+ P+ +  +TL
Sbjct: 370 ITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTL 419



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  +  +G +PD+ +YN +I GYC + R+DEA QLF ++    L PN++++  LI 
Sbjct: 362 ARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIH 421

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ G + +A  +F  M   G   N+ TYS L+DG+ K      AF ++  M      P
Sbjct: 422 GLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKP 481

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+            +G   +A +L+  +   G+ P+  + +T+ +
Sbjct: 482 NLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIIN 526



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 10/165 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +LF ++  +GL P+ ++YNT+I G C L  L EA  LF+ +      PN  T++
Sbjct: 393 RIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYS 452

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+D FCK+G    A  +F  M     K N+V Y+ LID   KS N++ A  ++ E+   
Sbjct: 453 ILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVK 512

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY-NLQSSG 170
            + PN         Q+Y +++ NG+  +GLL   L  + N++  G
Sbjct: 513 GLQPN--------AQIYTTII-NGLCKEGLLDEALEAFRNMEEDG 548



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  +  ++   GL+P I+T+ T+I   C + +  +A++LF+ +     +P+  T+T
Sbjct: 148 RVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYT 207

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +  KM E G + NVVTYS +ID + K + +  A D++  M   
Sbjct: 208 TIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVK 267

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP+I              +  EA  L + M    IMPD +  + L D
Sbjct: 268 GISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVD 316



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 79/129 (61%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +   +T+ G+EPD++TY++++ GY   + + EA +LF+ +     KP+  
Sbjct: 320 KEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVF 379

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI+ +CK  R+D+A  +F++M+ +G   N V+Y+ LI G  +  +++ A ++++ M
Sbjct: 380 SYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNM 439

Query: 124 CENNISPNI 132
             N   PN+
Sbjct: 440 HTNGNLPNL 448



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D  + L  Q+   GL P+I T + +I  +  L R+D A  +  K+  + L+P  +TFT
Sbjct: 113 YYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFT 172

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK G+   A  +F  M+ +G + +V TY+ +I+G  K     +A  + ++M E 
Sbjct: 173 TLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEA 232

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
              PN+              R  EA+ ++  M   GI PD
Sbjct: 233 GCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPD 272



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  LF  +   G  P++ TY+ ++ G+C      +A +LF  +     KPN + + I
Sbjct: 429 LREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNI 488

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CK G + DA  +FS++  KG + N   Y+ +I+G  K   +  A + +  M E+ 
Sbjct: 489 LIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDG 548

Query: 128 -----ISPNIAGR-------PTEAMQLYDSMLRNGIMPD 154
                IS N+  R        + A+QL   M   G + D
Sbjct: 549 CPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +   A +LF  +     +P+++ YN +I   C    L +A +LF +L    L+PN+ 
Sbjct: 460 KQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQ 519

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +I+  CKEG +D+A   F  M E G   + ++Y+ +I G+   ++   A  +  EM
Sbjct: 520 IYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEM 579



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A KLF +L  +GL+P+   Y TII G C    LDEA++ F  +      P+ I
Sbjct: 495 KSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEI 554

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           ++ ++I  F        A  +  +M +KG  A+V T
Sbjct: 555 SYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE-KGPKAN 96
           CS   +D+A+  F  +   +  P  I FT L+ A  K G+  D  +  +K +E  G   N
Sbjct: 73  CSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPN 132

Query: 97  VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYD 144
           + T S LI+ +   Q +  AF V  ++ +  + P I             G+  +AM+L+D
Sbjct: 133 IYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFD 192

Query: 145 SMLRNGIMPDGLLLSTLAD 163
            M+  G  PD    +T+ +
Sbjct: 193 DMVARGCRPDVYTYTTIIN 211


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +   AL L+ ++   G+ P I+TY  +I  + + +++ EA  LF+++    L P+ I
Sbjct: 580 KQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEI 639

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            FT +I  FCK G M  A  ++ +M + G   NVVTY+CLIDGYFK + M  A  ++ +M
Sbjct: 640 IFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKM 699

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             +N++P+              G      ++++ M  NG+ P+    +TL 
Sbjct: 700 KRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATLG 750



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 13/182 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L KE   + A ++   +    + P  I YNT+I GY   +   +A+ L+ K+  V + P
Sbjct: 542 WLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPP 601

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T+LI+ F    +M +A  +F +M++KG   + + ++C+I G+ K  +MKSA+ +Y
Sbjct: 602 SIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALY 661

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           EEM +   SPN+              R  +A  L++ M R+ + PDGL  + L  +  QS
Sbjct: 662 EEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALI-FGYQS 720

Query: 169 SG 170
            G
Sbjct: 721 LG 722



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M      +  A  LF ++  +GL PD I +  II G+C +  +  A  L+E+++     P
Sbjct: 612 MFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSP 671

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+T LID + K  RMD A  +F+KM       + +TY+ LI GY          +++
Sbjct: 672 NVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMF 731

Query: 121 EEMCENNISPNIAGRPTEAMQL 142
            EM EN + PN     T  + L
Sbjct: 732 NEMKENGVFPNYTAYATLGLHL 753



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + +A KL  ++   G  P+  T+N +I G+C   RLD+A+++F  +  V ++ N  T  I
Sbjct: 444 MGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNI 503

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + D F +EG   +A  + +++ + G   N  TY+ +I    K Q  + A++V   M +NN
Sbjct: 504 MADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNN 563

Query: 128 ISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           + P                 PT+A+ LY  ML+ GI P  +  + L +     S  QE
Sbjct: 564 VFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQE 621



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +L   +   G+ P   +Y+ +I G C   ++++A+ L E++    +KP+ +T++ 
Sbjct: 339 LHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSS 398

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L D  CK G  + +  MF  +  +G K +V++Y+ LI+G+   ++M SA  +  EM  N 
Sbjct: 399 LFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNG 458

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN       I G     R  +A++++  ML+ G+  +    + +AD
Sbjct: 459 SVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMAD 506



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 13/177 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + +L +F  L   G + D+I+YNT+I G+     +  A +L  ++      PNS TF  L
Sbjct: 410 EISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRL 469

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  FCK  R+D A  +F+ ML+ G + N+ T + + D + +  +   A  +  E+ +  I
Sbjct: 470 IHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGI 529

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQSSGSQ 172
            PN               +  +A ++   ML+N + P  +  +TL D Y  QS+ ++
Sbjct: 530 VPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTK 586



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD AL++F  +   G++ +I T N +   +       EA++L  ++  + + PNS 
Sbjct: 475 KRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSY 534

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I+I   CKE + + A  +   ML+       + Y+ LIDGY K  N   A  +Y +M
Sbjct: 535 TYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKM 594

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLS 159
            +  I P+I              +  EA  L+  M++ G++PD ++ +
Sbjct: 595 LKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFT 642



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A ++  ++   G  P ++TY   I G C    ++ A++L   L       NS 
Sbjct: 265 KNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSY 324

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  +I  FC+ G + +A  +   M   G      +YS LIDG  K   ++ A D+ EEM
Sbjct: 325 CYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEM 384

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            ++N+ P++    +    L+D + ++G+    L +     +NL + G +   I
Sbjct: 385 VQSNVKPSLVTYSS----LFDGLCKSGLTEISLSMF----HNLGAEGYKHDVI 429



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ AL L  ++    ++P ++TY+++  G C     + ++ +F  L     K +
Sbjct: 368 LCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHD 427

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++  LI+ F  +  M  A  +  +M   G   N  T++ LI G+ K Q +  A +V+ 
Sbjct: 428 VISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFT 487

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M +  +  NI             G   EA++L + +   GI+P+
Sbjct: 488 IMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPN 532



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 10/139 (7%)

Query: 4   KECHLDAALKLFGQL----TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           KE +LD + +LF  L     D  +   II  N +I  +   N L +A  +F +     L+
Sbjct: 152 KEVNLDVS-ELFSTLLDSPQDAHMGGSIIVANVLIKVFAENNMLVDAADVFVQARRFGLE 210

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-----NMK 114
            N ++   L++ F +  + +    +F ++ + GP  NV TY+ +++ Y K       ++ 
Sbjct: 211 LNILSCNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIV 270

Query: 115 SAFDVYEEMCENNISPNIA 133
            A +V EEM  N  SP + 
Sbjct: 271 KATEVLEEMEMNGESPTVV 289


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  H+  A+ +  ++   G++PD +T+ T+I G C+  R+ EAV+LF ++      PN
Sbjct: 131 LCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPN 190

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TFTIL+D  CK+G + +A  +F  M EKG + N+ TY+ L++GY     M  A  V+E
Sbjct: 191 TVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFE 250

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P++            + R  EA  L   M    ++P+ +  +TL
Sbjct: 251 IMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTL 302



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L  Q++++ L P+ +TYNT++ G C  + L EA +LF+K+    + PN  
Sbjct: 273 KSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLR 332

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D  CK G +++A  + + M E+  + ++V Y+ LI G F +  ++ A +++ ++
Sbjct: 333 TYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKL 392

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             N I P++             G   EA +L+  M  +G +PD
Sbjct: 393 FANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPD 435



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 97/173 (56%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+  +  A  +F  +T++G+EP+I TYN ++ GYC    +++A ++FE +      P
Sbjct: 200 VLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAP 259

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  +++ILI+ +CK  R+D+A  + ++M EK    N VTY+ L+ G   + ++  A +++
Sbjct: 260 SVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELF 319

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++MC + + PN+             G   EA++L  SM    + PD +L + L
Sbjct: 320 KKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNIL 372



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ ALKL   + +R LEPDI+ YN +I G     +L+ A +LF KL    ++P+
Sbjct: 341 LCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPS 400

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I    KEG  D+A  +F KM + G   +  +Y+ +I G+ ++Q+  +A  + +
Sbjct: 401 VRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLID 460

Query: 122 EMCENNISPN 131
           EM     S +
Sbjct: 461 EMVGRRFSAD 470



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+      + L  Q+   G+  +  T N +I   C L+ +  AV +  K+  + ++P+
Sbjct: 96  IAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPD 155

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+TFT LI+  C EGR+ +A  +F++M  +    N VT++ L+D   K   +  A  V+E
Sbjct: 156 SVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFE 215

Query: 122 EMCENNISPNI 132
            M E  + PNI
Sbjct: 216 TMTEKGVEPNI 226



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+  F ++      P  +     +       +    V L  ++    +  N  T  I
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI++ C+   +  A  + SKM + G + + VT++ LI+G      +K A +++ EM   +
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRD 186

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             PN              G  +EA  ++++M   G+ P+
Sbjct: 187 AMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPN 225



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF +L   G+ P + TYN +I G       DEA +LF K+      P+S ++ +
Sbjct: 382 LEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNV 441

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +I  F +      A  +  +M+ +   A+  T+  L+D
Sbjct: 442 IIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD 479



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE   D A KLF ++ D G  PD  +YN II G+        A+QL +++   +   +
Sbjct: 411 LLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSAD 470

Query: 62  SITFTILID 70
           S TF +L+D
Sbjct: 471 SSTFKMLLD 479


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  + G +   G +P   T+ T+I G C   ++ EA+QLF+K+T    +P+ 
Sbjct: 100 CHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDV 159

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G    A      M ++  +  VV YS +ID   K + +  A  ++ +
Sbjct: 160 LTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSD 219

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISPN            I G   EA++L+ +M+   IMPD L  +TL D
Sbjct: 220 MLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVD 272



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  AL LF  +  +G+ P+  TY+++I G C L    EA++LF  +   ++ P+
Sbjct: 204 LCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPD 263

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  L+DA CKEG +  A  +   M++   K +VVTY+ L+DG+     M    +V++
Sbjct: 264 QLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFD 323

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P++    T            +AM L++ M + G++PD +  +TL
Sbjct: 324 TMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTL 375



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF +++ +GL PD +TYNT+I G C + RL +A+ LF ++      P+ +T+ I
Sbjct: 350 MDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRI 409

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L D  CK  R+ +A ++   +       ++  YS ++DG  ++  +++A D++ ++    
Sbjct: 410 LFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKG 469

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + P++             G   EA +L+  M  NG  P+         YNL + G
Sbjct: 470 LHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNA------CTYNLITRG 518



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L+ Q+   G+  +  T N +I  +C LNRL  A  +   +  +  +P++ TFT
Sbjct: 69  HYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFT 128

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F KM  +G + +V+TY  LI+G  K  N  +A      M + 
Sbjct: 129 TLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQR 188

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N  P +              + TEA+ L+  ML  GI P+    S+L
Sbjct: 189 NCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSL 235



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +   + +F  +  +G  P +I+Y T+I GYC +  +D+A+ LFE+++   L P+++T+  
Sbjct: 315 MGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNT 374

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+ DA  +F +M+  G   ++VTY  L D   K+  +  A  + + +   N
Sbjct: 375 LIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTN 434

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + P+I            AG    A  L+  +   G+ PD
Sbjct: 435 LDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPD 473



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ L   +    L+PDI  Y+ ++ G C    L+ A  LF KL+   L P+
Sbjct: 414 LCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPD 473

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I+  C++G + +A+ +F +M E G   N  TY+ +  G+ ++     A  +++
Sbjct: 474 VRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQ 533

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 534 EMLSRGFSIDVS 545



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L+PD++TYN+++ G+C  + + + V +F+ +      P+ I++T LI+ +CK   MD A 
Sbjct: 295 LKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAM 354

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQL 142
            +F +M ++G   + VTY+ LI G      ++ A  ++ EM      P++         L
Sbjct: 355 GLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRI----L 410

Query: 143 YDSMLRNGIMPDGLLL 158
           +D + +N  + + ++L
Sbjct: 411 FDYLCKNHRLAEAMVL 426



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA  LF +L+ +GL PD+ TY  +I G C    L EA +LF ++      PN+ T+ +
Sbjct: 455 LEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNL 514

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +   F +      A  +F +ML +G   +V T + L++
Sbjct: 515 ITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVE 552



 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KLFG++ + G  P+  TYN I  G+   N    A+QLF+++       +  T T+
Sbjct: 490 LAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTL 549

Query: 68  LIDAFCKEG 76
           L++    +G
Sbjct: 550 LVEMLSDDG 558


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK+F ++ DRG+ P++  Y  ++   C+  ++DEAVQL   +      P+ +T+   + 
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLS 285

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+++A      + + G    +  YSCLIDG F+++     F  Y+ M E NISP
Sbjct: 286 GLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISP 345

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            AGR  +A+   D M + G +PD    +T+
Sbjct: 346 DVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTV 388



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 63/110 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL   + D G+ PD++TYNT+I G C    LD AV+LF++L    + P+ IT+  LID
Sbjct: 519 AYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLID 578

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              +  R +DA M+F  +L+ G   ++  Y+ ++    + + +  A +++
Sbjct: 579 GLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 25/177 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC------ 55
           L K   +D A+++F ++ + G +P ++TYN +I G+    RL+EA  LF K+        
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSL 486

Query: 56  ---VQLKPNSI----TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
              + L  N +    +   L+   C+ G++  A  +   +++ G   +VVTY+ LI+G  
Sbjct: 487 FLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLC 546

Query: 109 KSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           K++N+  A  +++E+    ISP+             A R  +AM L+ ++L++G  P
Sbjct: 547 KARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSP 603



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 17/163 (10%)

Query: 7   HLDAALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           H D A+  F  L D    GL      +  ++  + S  R  +AVQ F ++   Q +P + 
Sbjct: 116 HADEAM--FDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAF 173

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  ++ A    G +  A  ++++M+  G   N  TY+ L+DG  K      A  +++EM
Sbjct: 174 VYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEM 233

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  I PN+            AG+  EA+QL  SM   G +PD
Sbjct: 234 LDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPD 276



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 31/191 (16%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++I+ C     ++ AL     +  +G  PD   YNT++   C    L+ A  L  ++   
Sbjct: 352 IMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN 411

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  +S T TI+I   CK G +D+A  +F +M E G    V+TY+ LIDG+++   ++ A
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 117 FDVYEEMCENNISPNI--------------------------AGRPTEAMQLYDSMLRNG 150
             ++ +M   N +P++                          +G+  +A +L  S++ +G
Sbjct: 472 RMLFHKMEMGN-NPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSG 530

Query: 151 IMPDGLLLSTL 161
           ++PD +  +TL
Sbjct: 531 VVPDVVTYNTL 541



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 53/206 (25%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---------- 57
           +D A++L G + D+G  PD +TYN  + G C + R++EA   F++L  +Q          
Sbjct: 258 IDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEA---FQRLVMLQDGGFALGLKG 314

Query: 58  ----------------------------LKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
                                       + P+ + +TI+I    + GR++DA      M 
Sbjct: 315 YSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMK 374

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
           +KG   +   Y+ ++       +++ A  +  EM +NN+  +              G   
Sbjct: 375 KKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD 434

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EAMQ++D M  +G  P  +  + L D
Sbjct: 435 EAMQIFDEMGEHGCDPTVMTYNALID 460



 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A++LF +L  +G+ PD ITY T+I G    +R ++A+ LF+ +      P+
Sbjct: 545 LCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPS 604

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK 91
              +  ++ + C+  ++  A  ++   L K
Sbjct: 605 LSIYNSMMRSLCRMKKLSQAINLWLDYLPK 634


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 82/130 (63%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++ AA+K+F ++  +G++P+++TYN++I G C+  +++EA  L +++    LKPN I
Sbjct: 248 KDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNII 307

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   L++ FCK   +  A  +F  M ++G   NV TY+ LID Y K +NM+ AF +Y  M
Sbjct: 308 THNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIM 367

Query: 124 CENNISPNIA 133
               + P+++
Sbjct: 368 LGKGVCPDVS 377



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 93/169 (55%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  L  Q+ +  L+P+IIT+N ++ G+C    + +A +LF+ +    + PN  T+ 
Sbjct: 286 KVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYN 345

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILIDA+CK+  M+DA  ++  ML KG   +V TY+CLI G  +  ++++A ++  EM   
Sbjct: 346 ILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTK 405

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++  ++             G   +A++L D M R G+ P  L  +T+ D
Sbjct: 406 HLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMID 454



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 15/177 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE---AVQLFEKLTCVQL 58
           L K   L+ A  +   +  RG+  ++ITYNT+I GYC + ++ +   A  + +++    +
Sbjct: 173 LCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGI 232

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            PN +TF ILID FCK+  +  A  +F++M  +G K NVVTY+ LI+G   +  +  A  
Sbjct: 233 CPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATA 292

Query: 119 VYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + ++M  + + PNI                 +A +L+D M + GI P+    + L D
Sbjct: 293 LRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILID 349



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 87/153 (56%), Gaps = 4/153 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L+AA  L  ++  + L+ D+ITYN +I   C+   + +A++L +++    LKP+
Sbjct: 386 LCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPS 445

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID +CKEG +  A  + S+M + G  ANV TY+ LI G+ K   ++ A  +  
Sbjct: 446 QLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLN 505

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
           EM E  + PN   R T  + + + M+  G +PD
Sbjct: 506 EMLEKGLIPN---RMTYEI-VTEEMMEKGFVPD 534



 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +++ A  L+  +  +G+ PD+ TYN +I G C    L+ A  L  ++    LK + I
Sbjct: 353 KDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLI 412

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILID+ C +G M  A  +  +M  KG K + +TY+ +IDGY K  N+++A ++  +M
Sbjct: 413 TYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQM 472

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +     N+A             +  +A  L + ML  G++P+
Sbjct: 473 EKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPN 515



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 15/156 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           ++ ++  R +EP +I++N +I G C + +L++A  + E +    +  N IT+  LID +C
Sbjct: 150 VYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYC 209

Query: 74  KE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           K    G+M  A  +  +M   G   N VT++ LIDG+ K +N+ +A  V+ EM    + P
Sbjct: 210 KMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKP 269

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N+             G+  EA  L D M+ + + P+
Sbjct: 270 NVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPN 305



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 89/158 (56%), Gaps = 15/158 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK   ++   G+ P+ +T+N +I G+C    +  A+++F ++    +KPN +T+  L
Sbjct: 221 DAILK---EMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSL 277

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G++++AT +  +M+    K N++T++ L++G+ K++ +K A +++++M +  I
Sbjct: 278 INGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGI 337

Query: 129 SPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
           +PN+                 +A  LY  ML  G+ PD
Sbjct: 338 TPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPD 375



 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 15/166 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
             + F + +D GL+  + + N ++ G   +  + +   +++++   +++P  I+F I+I+
Sbjct: 112 GFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVIN 171

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY---FKSQNMKSAFDVYEEMCENN 127
             CK G+++ A  +   M  +G  ANV+TY+ LIDGY    K   M  A  + +EM  + 
Sbjct: 172 GLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADG 231

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I PN       I G       + AM+++  M R G+ P+ +  ++L
Sbjct: 232 ICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSL 277



 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/151 (18%), Positives = 64/151 (42%), Gaps = 15/151 (9%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           I  + ++  Y    R     + F++ +   LK +  +   L+    K G + D   ++ +
Sbjct: 94  IIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKE 153

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------------- 132
           M+ +  +  +++++ +I+G  K   +  A D+ E+M    +S N+               
Sbjct: 154 MIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGK 213

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G+  +A  +   M  +GI P+ +  + L D
Sbjct: 214 IGKMYKADAILKEMRADGICPNEVTFNILID 244


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 79/124 (63%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITY+T+I GYC   ++DEA++L   +  V LKPN++
Sbjct: 458 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTV 517

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ +CK  RM DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y  +
Sbjct: 518 TYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 577

Query: 124 CENN 127
            E+ 
Sbjct: 578 TESG 581



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 77/124 (62%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++ DRG+  + I +N+II  +C   R+ E+ +LF+ +  + +KP+ IT++ L
Sbjct: 428 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 487

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+A  + S M+  G K N VTY  LI+GY K   M  A  +++EM  + +
Sbjct: 488 IDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGV 547

Query: 129 SPNI 132
           SP+I
Sbjct: 548 SPDI 551



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD   YN +IC Y    ++DEA+ +F K+    L P+++T+  +I   CK GR++DA
Sbjct: 336 GIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDA 395

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
            + F +M+++G     + Y+ LI G       + A ++  EM +  I  N          
Sbjct: 396 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 455

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               GR  E+ +L+D M+R G+ PD +  STL D
Sbjct: 456 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLID 489



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A+  F Q+ D GL P  I YN++I G C+ N+ + A +L  ++    +  
Sbjct: 385 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 444

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+I F  +ID+ CKEGR+ ++  +F  M+  G K +++TYS LIDGY  +  M  A  + 
Sbjct: 445 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLL 504

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             M    + PN               R  +A+ L+  M  +G+ PD
Sbjct: 505 SGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPD 550



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KL   +   GL+P+ +TY T+I GYC ++R+ +A+ LF+++    + P+ IT+ I
Sbjct: 497 MDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNI 556

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    +  R   A  ++ ++ E G +  + TY+ ++ G  K++    A  +++ +C  +
Sbjct: 557 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMD 616

Query: 128 I-----SPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           +     + NI        GR  EA  L+ +   NG++P+
Sbjct: 617 LKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPN 655



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL-FEKLTCVQLKPNSITF 65
            LD      G +  +G   + IT+  ++ G C+  R  +A+ +   ++T +   P+  + 
Sbjct: 102 RLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSC 161

Query: 66  TILIDAFCKEGRMDDATMMFSKMLE---KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           TIL+   C E R  +A  +   M +    G   +VV+Y+ +I+G+FK  +   A+  Y E
Sbjct: 162 TILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHE 221

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           M +  ISP++    +            +AM++  SM++NG+MP+
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPN 265



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 15/163 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+    PD+ +   ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSY 199

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I+ F KEG    A   + +ML++    +VVTYS +I    K Q M  A +V   M +
Sbjct: 200 TTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVK 259

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           N + PN             +G+P EA+     +  +G+ PDGL
Sbjct: 260 NGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGL 302



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 17/172 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE     A   + ++ DR + PD++TY++II   C    +D+A+++   +    + PN
Sbjct: 206 FFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPN 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-----KANVVTYSCLIDGYFKSQNMKSA 116
             T+T ++  +C  G+  +A     K+   G      + ++ TY  L+ GY     +   
Sbjct: 266 CRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGM 325

Query: 117 FDVYEEMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGL 156
             + + M  N I P     NI        G+  EAM ++  M + G+ PD +
Sbjct: 326 HALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAV 377



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 17/150 (11%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PD+++Y T+I G+       +A   + ++   ++ P+ +T++ +I A CK   MD A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---------- 131
             + + M++ G   N  TY+ ++ GY  S   K A    +++  + + P+          
Sbjct: 251 MEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYC 310

Query: 132 --IAGRPTEAM-----QLYDSMLRNGIMPD 154
             + G  T+        L D M+RNGI PD
Sbjct: 311 TLLQGYATKGALVGMHALLDLMVRNGIHPD 340



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+ ++T+ G + ++ TYN I+ G C     D+A+++F+ L  + LK  + TF I+I
Sbjct: 569 AAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMI 628

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           DA  K GR  +A  +F      G   N  TY  + +
Sbjct: 629 DALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAE 664


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+   KL G++   G  PD++TYN ++  +C   R++ A   F ++    +  N +TF+ 
Sbjct: 245 LEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFST 304

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            +DAFCK G + +A  +F++M  KG K N VTY+CL+DG  K+  +  A  +  EM +  
Sbjct: 305 FVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQG 364

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  N+             G+  EA  ++  M R GI  + LL +TL
Sbjct: 365 VPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTL 410



 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 96/177 (54%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL L  ++ D+G+E D+  Y  +I G C+L +LDEA  L  K+    LKPN++ +T +
Sbjct: 421 ERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNI 480

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +DA  K  +  +A  +  KM++ G + N+VTY  L+DG  K+ ++  A   + +M +  +
Sbjct: 481 MDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGL 540

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN+             GR  +A+ L D M+  G+  D ++ ++L D +L+    Q+
Sbjct: 541 EPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQD 597



 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ D G  P+I+TY  ++ G C    +DEA+  F K+  + L+PN   +T L+D
Sbjct: 493 AIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVD 552

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+D A ++  +M++KG   + V  + L+DG+ K  N++ AF +  +M  + +  
Sbjct: 553 GLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQL 612

Query: 131 NIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++ G               EA ++   M+ NGI PD ++ + L
Sbjct: 613 DLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCL 655



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  L  ++   G  PD++TYN++I GY     L+E  +L  ++     +P+
Sbjct: 204 LCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPD 263

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L++ FCK GRM+ A   F++M  +G  ANVVT+S  +D + K+  ++ A  ++ 
Sbjct: 264 VVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFA 323

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    + PN             AGR  +A+ L + M++ G+  + +  + L D
Sbjct: 324 QMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVD 377



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+KLF Q+  +G++P+ +TY  ++ G C   RLD+A+ L  ++    +  N +T+T+L+D
Sbjct: 318 AMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVD 377

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKEG++ +A  +F  M   G +AN + Y+ LI G+F  +N + A  +  EM +  +  
Sbjct: 378 GLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMEL 437

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +++             +  EA  L + M   G+ P+ ++ + + D   ++    E
Sbjct: 438 DVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESE 492



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+  F ++ D GLEP++  Y  ++ G C   RLD+AV L +++    +  +
Sbjct: 519 LCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLD 578

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++  T L+D   K+G + DA  + +KM+  G + ++  Y+C + G+     ++ A +V  
Sbjct: 579 NVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLS 638

Query: 122 EMCENNISPN 131
           EM EN I+P+
Sbjct: 639 EMIENGITPD 648



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   + A +LF QL      P++ T+N +I   C    L EA  L  ++  +   P+
Sbjct: 173 LARERSSELAWRLFEQLP----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPD 228

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID + K G +++   +  +M   G + +VVTY+ L++ + K   M+ A+  + 
Sbjct: 229 VVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFA 288

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    +  N+             G   EAM+L+  M   G+ P+ +  + L D
Sbjct: 289 EMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVD 342



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD AL L  ++  +G+  +++TY  ++ G C   ++ EA  +F  +    ++ N +
Sbjct: 346 KAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANEL 405

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI         + A  + S+M +KG + +V  Y  LI G    Q +  A  +  +M
Sbjct: 406 LYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKM 465

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  + PN             A + +EA+ L   M+ +G  P+ +    L D  L  +GS
Sbjct: 466 DECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVD-GLCKAGS 524

Query: 172 QEHCI 176
            +  I
Sbjct: 525 IDEAI 529


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 98/183 (53%), Gaps = 18/183 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ +++ AL+ F  ++D+ L PDI+TYNT+I G C    L +A +L++ +   ++ PN +
Sbjct: 416 RDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHV 475

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ILID+ C++G++D+A     +M+ KG   N++TY+ +I GY +S N+        +M
Sbjct: 476 TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKM 535

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             + + P++             G+  EA  L   M    + PD +       YN+  SG 
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVT------YNMIISGF 589

Query: 172 QEH 174
             H
Sbjct: 590 SVH 592



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A +L  ++ +RG+ PD+ T+ T+I GYC    +++A+Q F+ ++  +L+P+
Sbjct: 379 LCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  C++G +  A  ++  M  +    N VTYS LID + +   + +AF   +
Sbjct: 439 IVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLD 498

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    I PNI            +G  ++  Q    M  + +MPD +  +TL
Sbjct: 499 EMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL 550



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A     ++ ++G+ P+I+TYN+II GYC    + +  Q   K+   ++ P+ IT+ 
Sbjct: 489 QVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYN 548

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  + KEG+M +A  +   M  +  + + VTY+ +I G+    NM+ A  VY++M   
Sbjct: 549 TLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGAR 608

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            I P+            +AG   ++ QL+D ML+ G+ PD
Sbjct: 609 GIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++AA+ L   +  +G++P ++TYN+++ G     R D+A ++F  +    + P+  +F +
Sbjct: 210 VEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNM 269

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC+ G +++A   + +M  +    +VV++SCLI  + +   M  A +   EM E  
Sbjct: 270 LIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFG 329

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+             AG   EA+++ D M+  G +PD +  +TL
Sbjct: 330 LMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTL 375



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++   G  PD++TYNT++ G C   RL +A +L  ++    + P+  TFT LI 
Sbjct: 353 ALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIH 412

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++G ++ A   F  + ++  + ++VTY+ LIDG  +  ++  A +++++M    I P
Sbjct: 413 GYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFP 472

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N              G+   A    D M+  GI+P+
Sbjct: 473 NHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPN 508



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 88/175 (50%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +  +   +D A +   ++ + GL PD + Y  +I G+C    + EA+++ +++      P
Sbjct: 308 LFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLP 367

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  L++  CKE R+ DA  + ++M E+G   ++ T++ LI GY +  N++ A   +
Sbjct: 368 DVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFF 427

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + + +  + P+I             G   +A +L+D M    I P+ +  S L D
Sbjct: 428 DTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILID 482



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++    D A ++F  +   G+ PD+ ++N +I G+C    L+EA++ ++++   ++ P+
Sbjct: 239 LLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPD 298

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F+ LI  F + G MD A     +M E G   + V Y+ +I G+ ++  M  A  V +
Sbjct: 299 VVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRD 358

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM      P++              R ++A +L + M   G+ PD    +TL
Sbjct: 359 EMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTL 410



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL+ + ++  R + PD+++++ +I  +     +D A +   ++    L P+ + +T+
Sbjct: 280 LEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTM 339

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC+ G M +A  +  +M+  G   +VVTY+ L++G  K + +  A ++  EM E  
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++             G   +A+Q +D++    + PD +  +TL D
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLID 447



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +  ++  R + PD++T+N ++        ++ A+ L + +    +KP  +T+  ++    
Sbjct: 181 VISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLL 240

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           + GR D A  +F  M   G   +V +++ LI G+ ++  ++ A   Y+EM    ++P++ 
Sbjct: 241 RNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVV 300

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLS 159
                       G    A +    M   G+MPDG++ +
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYT 338



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E +  T N ++  YC   +  E   +  ++    + P+ +T  +++DA  + G ++ A  
Sbjct: 156 EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMA 215

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +   M+ KG K  +VTY+ ++ G  ++     A +V+  M    ++P++           
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC 275

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            AG   EA++ Y  M    + PD +  S L
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCL 305



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 46/90 (51%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE  +  A  L   + +  ++PD +TYN II G+     + EA  +++K+    ++P+ 
Sbjct: 555 VKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDR 614

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            T+  +I+     G    +  +  +ML+KG
Sbjct: 615 YTYMSMINGHVVAGNSKKSFQLHDEMLQKG 644


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A+ L  ++      PD++ +  +I G C   RLDEA  + E+      +P+
Sbjct: 19  LCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPD 75

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ + ID  CK  R+DDA  +  KM EK      VTY+ L+DG  K+  +  A  + E
Sbjct: 76  YVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILE 135

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E   SP +            AGR  EA +++  ML NG  PD  + + L
Sbjct: 136 QMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTAL 187



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 17/188 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  LD A  +  +    G EPD +TYN  I G C   R+D+A QL +K+   +  P 
Sbjct: 51  LCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPT 110

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+T L+D   K GR+D+A  +  +M+EKG    + TY+ +IDG  K+  ++ A  ++ 
Sbjct: 111 TVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFV 170

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRN----GIMPDGLLLSTLADYN 165
           +M  N   P+              G+  EA+   + M+ N    G+ PD +++  L    
Sbjct: 171 DMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPD-VVIHNLVIRQ 229

Query: 166 LQSSGSQE 173
           L +SG+ E
Sbjct: 230 LCASGNLE 237



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   LD AL    +  +RG  PD +TY +II G C L R++E  + F ++     +P+
Sbjct: 299 FLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPD 358

Query: 62  SITFTILIDAF-----------------------------------CKEGRMDDATMMFS 86
           ++T+  LID F                                   CK GR+ +A   F 
Sbjct: 359 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 418

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M E+G  A VVTYS L+DG+    N+ +A +++  M +    PN+            AG
Sbjct: 419 AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAG 478

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           +  +A   ++ +L+  + PD
Sbjct: 479 KLAKAYFYFEKLLQRRLCPD 498



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A+    ++++R   P + TY +++ G+  L RLDEA+   ++       P+
Sbjct: 264 LCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPD 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+T +ID  CK GR+++    F +M  +G + + VTY+ LIDG+ K++ +  A  VY 
Sbjct: 324 AVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYR 383

Query: 122 EMCE-----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +     + ++ NI       AGR  EA   + +M   G +   +  S L D
Sbjct: 384 QMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMD 437



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A   F  + +RG    ++TY+ ++ G+CS   +  AV+LF ++     +PN
Sbjct: 404 LCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPN 463

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS-QNMKSAFDVY 120
            +++ I+I   C+ G++  A   F K+L++    +V T++  + G  +    +    +++
Sbjct: 464 LVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELF 523

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M     SPN+            AG     ++++  M+  G+ PD ++ +TL
Sbjct: 524 ESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTL 576



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 17/178 (9%)

Query: 2   LIKECHLDAALKLFGQLTD----RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           L K   LD AL    Q+ +    RG+EPD++ +N +I   C+   L++A+  F++L    
Sbjct: 191 LAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELD-DS 249

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L     TF  L+ A CK  R ++A     KM E+     + TY+ L+DG+ K   +  A 
Sbjct: 250 LDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEAL 309

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              +E  E    P+              GR  E  + +  M   G  PD +  + L D
Sbjct: 310 LQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALID 367



 Score = 68.6 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 13/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+ AL  F +L D  L+    T+N ++   C   R +EA+   +K++  +  P   T+T
Sbjct: 235 NLEDALAYFDELDD-SLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYT 293

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D F K GR+D+A +   + +E+G   + VTY+ +IDG  K   ++   + + EM   
Sbjct: 294 SLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR 353

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+             A    +A ++Y  ML++G +   +  + + D
Sbjct: 354 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILD 402



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 41/191 (21%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA------------------ 46
           E ++ AA++LF ++ DRG EP++++YN II G C   +L +A                  
Sbjct: 442 EGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT 501

Query: 47  ------------------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                             V+LFE +      PN  +++IL+D  C+ G ++    +F +M
Sbjct: 502 FNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEM 561

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLR 148
           + +G   +VV ++ LI     +  +  A +V+ E+ E   +P+          L D++ R
Sbjct: 562 VSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL-ERRSAPD----AWSYWSLLDALSR 616

Query: 149 NGIMPDGLLLS 159
              M +  LLS
Sbjct: 617 CERMEEARLLS 627



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+  L++F ++  RG+ PD++ +NT+I   C   R+DEA+++F +L   +  P++ ++  
Sbjct: 551 LEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELE-RRSAPDAWSYWS 609

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG 92
           L+DA  +  RM++A ++   M  +G
Sbjct: 610 LLDALSRCERMEEARLLSFHMKLQG 634


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+++  +  A  ++ ++   G  PD+ITY+T+I G+    + D+A +LFE +     +PN
Sbjct: 527 LMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPN 586

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  L+   CKE + D+A  +F KM+E+G   + VTY+ L+ G+     ++ A +V++
Sbjct: 587 AVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFD 646

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      P++            AG+P EA QL+  M+     PD +  + + D
Sbjct: 647 EMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMID 700



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 96/166 (57%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   D A +LF ++ +RG +PD +TY T++ G+C++ ++++AV++F+++      P+
Sbjct: 597 LCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 656

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L+  F + G+  +A  +F  M+ +  K + V+++ +IDG  K++ +  A +V+E
Sbjct: 657 VVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFE 716

Query: 122 EMCENN-ISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
            M +++  SP++              R +EAM+++  + R  + PD
Sbjct: 717 RMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPD 762



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   +  A  +F  + ++R   PD+++Y+ +I G+C ++ L  A +L++++  +   P
Sbjct: 456 LCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVP 515

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  T+   ++   ++GR+ DA  ++ +M+  G   +V+TYS LI G+  ++    A +++
Sbjct: 516 NVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELF 575

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M      PN               +P EA +L+  M+  G  PD +  +TL
Sbjct: 576 ETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KL+ Q+ D    P++ TYN  + G     R+ +A  ++E++      P+ IT++ 
Sbjct: 498 LGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYST 557

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F    + D A  +F  M+ +G + N VTY+CL+ G  K      A +++ +M E  
Sbjct: 558 LIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 617

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             P+              G+  +A++++D M+  G  PD
Sbjct: 618 CDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 656



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  F  L  R  + D+ TYN ++        L +A Q+FEK+    + PN  T+ +L+ 
Sbjct: 113 ALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQ 172

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCENNIS 129
           + C E   D+A   F +M++KG K +   Y  + +   K+   +  F  V+    E  ++
Sbjct: 173 SSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTE-CLKATGKEGEFSRVFGRDLEKRVA 231

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                         I  +  EA +L+ +M+++G  PD  + S +
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYM 275



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILI 69
           A KLF  +   G +PD   Y+ ++  +C L  LDEA +LF ++      P N++ +T  +
Sbjct: 253 ASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFL 312

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              CK G+++ A      M E    +  V Y  LI    +S  +  A +   E+   NI 
Sbjct: 313 SGLCKSGKIEQAFEACRTMQESLSSSQPV-YDMLIRLLIESGRIDKAEEACLEIAGRNIQ 371

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           P+             AGR   A+ L ++M++ G  PD
Sbjct: 372 PSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPD 408



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 51/225 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI+   +D A +   ++  R ++P   T +++I   C   R+D A+ L E +      P
Sbjct: 348 LLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCP 407

Query: 61  NSITFTILIDAFCKEGRMDDAT-------------------------------------M 83
           +  T ++LI+  CK  ++ +A                                       
Sbjct: 408 DMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFA 467

Query: 84  MFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
           +FS M+ E+    +VV+YS LIDG+ K   +  A  +Y++M + N  PN+          
Sbjct: 468 IFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGL 527

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQSSGSQEH 174
              GR  +A  +Y+ M+  G  PD +  STL   ++L     Q H
Sbjct: 528 MRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAH 572



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   LD A+++F ++  D G  PD++TYN++I G C   RL EA+++F+++  ++L P
Sbjct: 702 LSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSP 761

Query: 61  NSITFTILIDA 71
           +   F +L++A
Sbjct: 762 DPHAFNVLLEA 772



 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 37/87 (42%)

Query: 45  EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           EA+  F  L     K +  T+  L+D   +   +  A  +F KM+ +G   N  TY+ L+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPN 131
                 +N   A   + EM +    P+
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPS 198



 Score = 39.3 bits (90), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            Y+ +I       R+D+A +   ++    ++P+S T   +I   CK GR+D A  +   M
Sbjct: 341 VYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETM 400

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++G   ++ T+S LI+   K+  ++ A +  + M
Sbjct: 401 IKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 435


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK+F ++ DRG+ P++  Y  ++   C+  ++DEAVQL   +      P+ +T+   + 
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLS 285

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+++A      + + G    +  YSCLIDG F+++     F  Y+ M E NISP
Sbjct: 286 GLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISP 345

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            AGR  +A+   D M + G +PD    +T+
Sbjct: 346 DVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTV 388



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 63/110 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL   + D G+ PD++TYNT+I G C    LD AV+LF++L    + P+ IT+  LID
Sbjct: 519 AYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLID 578

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              +  R +DA M+F  +L+ G   ++  Y+ ++    + + +  A +++
Sbjct: 579 GLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 25/177 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC------ 55
           L K   +D A+++F ++ + G +P ++TYN +I G+    RL+EA  LF K+        
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSL 486

Query: 56  ---VQLKPNSI----TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
              + L  N +    +   L+   C+ G++  A  +   +++ G   +VVTY+ LI+G  
Sbjct: 487 FLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLC 546

Query: 109 KSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           K++N+  A  +++E+    ISP+             A R  +AM L+ ++L++G  P
Sbjct: 547 KARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSP 603



 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 17/163 (10%)

Query: 7   HLDAALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           H D A+  F  L D    GL      +  ++  + S  R  +AVQ F ++   Q +P + 
Sbjct: 116 HADEAM--FDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAF 173

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  ++ A    G +  A  ++++M+  G   N  TY+ L+DG  K      A  +++EM
Sbjct: 174 VYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEM 233

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  I PN+            AG+  EA+QL  SM   G +PD
Sbjct: 234 LDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPD 276



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 31/191 (16%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++I+ C     ++ AL     +  +G  PD   YNT++   C    L+ A  L  ++   
Sbjct: 352 IMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN 411

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  +S T TI+I   CK G +D+A  +F +M E G    V+TY+ LIDG+++   ++ A
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 117 FDVYEEMCENNISPNI--------------------------AGRPTEAMQLYDSMLRNG 150
             ++ +M   N +P++                          +G+  +A +L  S++ +G
Sbjct: 472 RMLFHKMEMGN-NPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSG 530

Query: 151 IMPDGLLLSTL 161
           ++PD +  +TL
Sbjct: 531 VVPDVVTYNTL 541



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 53/206 (25%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---------- 57
           +D A++L G + D+G  PD +TYN  + G C + R++EA   F++L  +Q          
Sbjct: 258 IDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEA---FQRLVMLQDGGFALGLKG 314

Query: 58  ----------------------------LKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
                                       + P+ + +TI+I    + GR++DA      M 
Sbjct: 315 YSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMK 374

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
           +KG   +   Y+ ++       +++ A  +  EM +NN+  +              G   
Sbjct: 375 KKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD 434

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EAMQ++D M  +G  P  +  + L D
Sbjct: 435 EAMQIFDEMGEHGCDPTVMTYNALID 460



 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A++LF +L  +G+ PD ITY T+I G    +R ++A+ LF+ +      P+
Sbjct: 545 LCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPS 604

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK 91
              +  ++ + C+  ++  A  ++   L K
Sbjct: 605 LSIYNSMMRSLCRMKKLSQAINLWLDYLPK 634


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK+F ++ DRG+ P++  Y  ++   C+  ++DEAVQL   +      P+ +T+   + 
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLS 285

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+++A      + + G    +  YSCLIDG F+++     F  Y+ M E NISP
Sbjct: 286 GLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISP 345

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            AGR  +A+   D M + G +PD    +T+
Sbjct: 346 DVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTV 388



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 63/110 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL   + D G+ PD++TYNT+I G C    LD AV+LF++L    + P+ IT+  LID
Sbjct: 519 AYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLID 578

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              +  R +DA M+F  +L+ G   ++  Y+ ++    + + +  A +++
Sbjct: 579 GLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 25/177 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC------ 55
           L K   +D A+++F ++ + G +P ++TYN +I G+    RL+EA  LF K+        
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSL 486

Query: 56  ---VQLKPNSI----TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
              + L  N +    +   L+   C+ G++  A  +   +++ G   +VVTY+ LI+G  
Sbjct: 487 FLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLC 546

Query: 109 KSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           K++N+  A  +++E+    ISP+             A R  +AM L+ ++L++G  P
Sbjct: 547 KARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSP 603



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 31/191 (16%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++I+ C     ++ AL     +  +G  PD   YNT++   C    L+ A  L  ++   
Sbjct: 352 IMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQN 411

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  +S T TI+I   CK G +D+A  +F +M E G    V+TY+ LIDG+++   ++ A
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 117 FDVYEEMCENNISPNI--------------------------AGRPTEAMQLYDSMLRNG 150
             ++ +M   N +P++                          +G+  +A +L  S++ +G
Sbjct: 472 RMLFHKMEMGN-NPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSG 530

Query: 151 IMPDGLLLSTL 161
           ++PD +  +TL
Sbjct: 531 VVPDVVTYNTL 541



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 17/163 (10%)

Query: 7   HLDAALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           H D A+  F  L D    GL      +  ++  + S  R  +AVQ F ++   Q +P + 
Sbjct: 116 HADEAM--FDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAF 173

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  ++ A    G +  A  ++++M+  G   N  TY+ L+DG  K      A  +++EM
Sbjct: 174 VYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEM 233

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  I PN+            AG+  EA+QL  SM   G +PD
Sbjct: 234 LDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPD 276



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 53/206 (25%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---------- 57
           +D A++L G + D+G  PD +TYN  + G C + R++EA   F++L  +Q          
Sbjct: 258 IDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEA---FQRLVMLQDGGFALGLKG 314

Query: 58  ----------------------------LKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
                                       + P+ + +TI+I    + GR++DA      M 
Sbjct: 315 YSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMK 374

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
           +KG   +   Y+ ++       +++ A  +  EM +NN+  +              G   
Sbjct: 375 KKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD 434

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EAMQ++D M  +G  P  +  + L D
Sbjct: 435 EAMQIFDEMGEHGCDPTVMTYNALID 460



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 49/90 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A++LF +L  +G+ PD ITY T+I G    +R ++A+ LF+ +      P+
Sbjct: 545 LCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPS 604

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK 91
              +  ++ + C+  ++  A  ++   L K
Sbjct: 605 LSIYNSMMRSLCRMKKLSQAINLWLDYLPK 634


>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 14/169 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PDI TYN +I  +    R+D AV+ FE+L     KP+ I++  LI+   
Sbjct: 460 LYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLG 519

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A M F +M EKG   +VVTYS LI+ + K+  ++ A  +++EM     +PN+ 
Sbjct: 520 KNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLI 579

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
                      +GR  EA+ LY  + + G+ PD +  + L    LQS G
Sbjct: 580 TYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLE--RLQSGG 626



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 63/102 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ ++GL PD++TY+T+I  +   ++++ A +LF+++   +  PN
Sbjct: 518 LGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPN 577

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            IT+ IL+D   + GR  +A  +++K+ ++G   + +TY+ L
Sbjct: 578 LITYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 619



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+F  +  R  EPD+ TY  +I      ++ DEA+ LF+ +      PN I +  +I+A 
Sbjct: 252 KVFEDMKRRHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEAL 311

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            K   +D A ++FSKM+E   + N  TYS +++
Sbjct: 312 AKGRMVDKAVLLFSKMVENDIQPNEFTYSVILN 344



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV---QLFEKLTCVQLKPNSITFTI 67
           A +++  +   G   DI  YN ++         DE V   ++FE +     +P+  T+TI
Sbjct: 216 AFRVYLDMIRHGYRLDIFGYNMLLDALAK----DEKVCSYKVFEDMKRRHCEPDVFTYTI 271

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I    K  + D+A  +F  ML KG   N++ Y+ +I+   K + +  A  ++ +M EN+
Sbjct: 272 MIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVEND 331

Query: 128 ISPN 131
           I PN
Sbjct: 332 IQPN 335



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 23/177 (12%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  K    D AL LF  +  +G  P++I YNT+I        +D+AV LF K+    ++P
Sbjct: 275 MTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVENDIQP 334

Query: 61  NSITFTILIDAFCKEGRMDDATMM---------------FSKMLEK-GPKANVVTYSCLI 104
           N  T++++++    EG+++    +               F + L K G  +      C +
Sbjct: 335 NEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQIYAYFVRTLSKVGHASEAHRLFCNM 394

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +    +  +   + E +C        AG+ TEA+ L + +   GI  D ++ +T+
Sbjct: 395 WNFHDKGDKDACMSMLESLCS-------AGKMTEAIDLLNKIHEKGITTDTIMYNTV 444



 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 44/204 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTI---ICGYCSLNRLD-------------- 44
           L K   +D A+ LF ++ +  ++P+  TY+ I   +     LN+LD              
Sbjct: 311 LAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQI 370

Query: 45  ---------------EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
                          EA +LF  +     K +      ++++ C  G+M +A  + +K+ 
Sbjct: 371 YAYFVRTLSKVGHASEAHRLFCNMWNFHDKGDKDACMSMLESLCSAGKMTEAIDLLNKIH 430

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
           EKG   + + Y+ +     + + +    D+YE+M ++   P+I            AGR  
Sbjct: 431 EKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVD 490

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTL 161
            A++ ++ +  +   PD +  ++L
Sbjct: 491 IAVKFFEELENSDCKPDVISYNSL 514



 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 28  ITYNT---IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
            TYN    I+    +  R D+A  L   +    ++ +  T  IL+  F   G  +D    
Sbjct: 128 FTYNRLFLILSKSTNPARFDQARSLLHDMDRRAVRGSISTVNILVGFF---GAGEDLERC 184

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG 134
            S + +   + N  TY CL+  Y ++ +  +AF VY +M  +    +I G
Sbjct: 185 VSLVKKWDLRLNAYTYKCLLQAYLRALDSSTAFRVYLDMIRHGYRLDIFG 234


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K   L+AALK+   + + GL P+IIT N +I   C   RLDEA  +F  L      P
Sbjct: 420 MLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTP 479

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +S+TF  LID   + G+++DA M++ KML+ G   N V Y+ LI  +FK    +    +Y
Sbjct: 480 DSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIY 539

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +EM     SP++            AG   +   L++ +   G+ PD
Sbjct: 540 KEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPD 585



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L  ++  +GL+P ++TY ++I G   ++RLDEA  LFE+     +  N +
Sbjct: 633 KSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVV 692

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K GR+D+A ++  ++++KG   N  T++CL+D   K++ +  A   ++ M
Sbjct: 693 VYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNM 752

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 PN       + G     +  +A   +  M + G+ P+ +  +T+
Sbjct: 753 KNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTM 802



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 70/119 (58%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KLF ++ ++GL  D   YN +I G+C   ++++A QL E++    L+P  +T+  +ID  
Sbjct: 607 KLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGL 666

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            K  R+D+A M+F +   K    NVV YS LIDG+ K   +  A+ + EE+ +  ++PN
Sbjct: 667 AKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPN 725



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K F +L  +GL PD +T+ ++I   C   R+DEAV+LFE+L   +  P    +  
Sbjct: 288 VDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNT 347

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +   G+ ++A  +  +   KG   +V+ Y+C++    +   ++ A  + E M + +
Sbjct: 348 MIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM-KMD 406

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            AG    A+++ DSM   G+ P+ + ++ + D   ++    E C
Sbjct: 407 AAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEAC 466



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P++ +YN +I   C    L+ A+++ + +    L PN IT  I+ID  CK  R+D+A  +
Sbjct: 409 PNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSI 468

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
           F  +  K    + VT+  LIDG  +   +  A+ +YE+M ++  +PN             
Sbjct: 469 FLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFK 528

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            GR  +  ++Y  M+  G  PD +LL+   D
Sbjct: 529 CGRKEDGHKIYKEMMHRGCSPDLMLLNNYMD 559



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K   ++    LF ++  +GL PD+ +Y+ +I G        +  +LF ++    L  +
Sbjct: 561 VFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLD 620

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  + I+ID FCK G+++ A  +  +M  KG +  VVTY  +IDG  K   +  A+ ++E
Sbjct: 621 TRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFE 680

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E     +  N+             GR  EA  + + +++ G+ P+    + L D
Sbjct: 681 EAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLD 734



 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 46/207 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-------- 52
           +L K   +D A++LF +L      P +  YNT+I GY S+ + +EA  L E+        
Sbjct: 316 VLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIP 375

Query: 53  --------LTCVQLK------------------PNSITFTILIDAFCKEGRMDDATMMFS 86
                   LTC+  K                  PN  ++ ILID  CK G ++ A  +  
Sbjct: 376 SVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQD 435

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
            M E G   N++T + +ID   K+Q +  A  ++  +     +P+              G
Sbjct: 436 SMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHG 495

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  +A  LY+ ML +G  P+ ++ ++L
Sbjct: 496 KVNDAYMLYEKMLDSGQTPNAVVYTSL 522



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +  +E  +DAAL L  ++       D++ YN  I  +  + ++D A + F +L    L P
Sbjct: 246 VFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVP 305

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TFT +I   CK  R+D+A  +F ++        V  Y+ +I GY        A+ + 
Sbjct: 306 DDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLL 365

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSM 146
           E        P++             G+  EA+++ ++M
Sbjct: 366 ERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM 403



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 60/120 (50%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++ ++  RG  PD++  N  +        +++   LFE++    L P+  +++ILI   
Sbjct: 537 KIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGL 596

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G   D   +F +M E+G   +   Y+ +IDG+ KS  +  A+ + EEM    + P +
Sbjct: 597 VKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTV 656



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L L  Q+ + G E  +  + T+IC +    R+D A+ L +++       + + + + 
Sbjct: 219 DPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVC 278

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K G++D A   F ++  +G   + VT++ +I    K++ +  A +++EE+  N  
Sbjct: 279 IDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKS 338

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            P +             G+  EA  L +   R G +P
Sbjct: 339 VPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIP 375



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 63/121 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D AL  F  + +    P+ +TY+ ++ G C + + ++A   ++++    LKPN
Sbjct: 736 LVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPN 795

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T +I    + G + +A  +F +    G   +   Y+ +I+G   +     A+ ++E
Sbjct: 796 TITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFE 855

Query: 122 E 122
           E
Sbjct: 856 E 856



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A   + ++  +GL+P+ ITY T+I G   +  + EA  LFE+       P+
Sbjct: 771 LCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPD 830

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           S  +  +I+      +  DA ++F +   KG +    T   L+D   K+  ++ A
Sbjct: 831 SACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQA 885



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   L  A  +   +      P    Y T+I    + +  D  + L  ++  +  +  
Sbjct: 177 FVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVT 236

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              FT LI  F +EGR+D A  +  +M      A++V Y+  ID + K   +  A+  + 
Sbjct: 237 VHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFH 296

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           E+    + P+             A R  EA++L++ +  N  +P
Sbjct: 297 ELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVP 340


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A +L  ++TD G  PD++TY+T+I G CS+ R+D+A  L E +   Q KP  +T   
Sbjct: 488 LDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNT 547

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK GR+ +A  +   M+  G   +VVTY+ L+ G+ ++   + A ++  +M    
Sbjct: 548 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 607

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++PN+            A R  EA  ++  M  +G  P+
Sbjct: 608 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 646



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 21/181 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  LF +L   G+ P  + Y ++I G C  N  D+A +LF  +      P+
Sbjct: 333 LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPS 392

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ++IDA CK G +++A  +  KM+E G   +VVTY+ ++DG  KS  ++ A  ++ 
Sbjct: 393 PVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFN 452

Query: 122 EMCENNISPNI---------------------AGRPTEAMQLYDSMLRNGIMPDGLLLST 160
           EM     +PN                       G+  EA +L   M  +G +PD +  ST
Sbjct: 453 EMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYST 512

Query: 161 L 161
           L
Sbjct: 513 L 513



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 24/193 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPD---------IITYNTIICGYCSLNRLDEAVQLFEK 52
           L K   ++ A++LFG   DR L            +  YN +I G C  +R+DEAVQ+FEK
Sbjct: 257 LCKAGRVEEAVRLFG---DRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEK 313

Query: 53  LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           +    + P+S ++ ILID   K G+++DA  +F K+L  G   + V Y+ LI G   + +
Sbjct: 314 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 373

Query: 113 MKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
              A +++ +M      P+              G   EA  L   M+ +G +PD +  +T
Sbjct: 374 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 433

Query: 161 LADYNLQSSGSQE 173
           + D   +SS  +E
Sbjct: 434 VMDGLCKSSRVEE 446



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++   +   G  PD++TYNT++ G+C   + + A +L   +    L PN
Sbjct: 552 LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPN 611

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L+   CK  R+ +A  +F++M   G   N+ TY+ LI G+  +  +     ++ 
Sbjct: 612 VVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG 671

Query: 122 EMCENNISPNIAGRPTEAMQLYDS 145
           EM    ISP+     T A +L  S
Sbjct: 672 EMVCAGISPDHVVYGTLAAELCKS 695



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 21/195 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR---------LDEAVQLFEK 52
           L K   ++ AL LF ++   G  P+  ++NTII G C  ++         LDEA +L ++
Sbjct: 438 LCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKR 497

Query: 53  LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           +T     P+ +T++ LI   C   R+DDA  +   M+++  K  VVT + LI G  K+  
Sbjct: 498 MTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR 557

Query: 113 MKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLST 160
           +K A +V + M  +  SP++            AG+   A +L   M+  G+ P+ +  + 
Sbjct: 558 IKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTA 617

Query: 161 LADYNLQSSGSQEHC 175
           L     +++   E C
Sbjct: 618 LVSGLCKANRLPEAC 632



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L   +  RGL P+++TY  ++ G C  NRL EA  +F ++      PN  T+T L
Sbjct: 594 ERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTAL 653

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  FC  G++D    +F +M+  G   + V Y  L     KS     A ++  E  E+  
Sbjct: 654 ILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLR 713

Query: 129 SPNI--------------AGRPTEAMQLYDSMLRNGIMP 153
           S                 AG+   A+     M+R G +P
Sbjct: 714 SEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLP 752



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 88/178 (49%), Gaps = 21/178 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    +D AL+++    +   EP ++T N ++ G+CS  ++D+A +L   +   +  P+
Sbjct: 190 LMDSGRIDEALQVY---RENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPD 246

Query: 62  SITFTILIDAFCKEGRMDDATMMFS------KMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
            +++  ++D  CK GR+++A  +F                ++  Y+ +I G  ++  +  
Sbjct: 247 EVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDE 306

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           A  ++E+M E N+SP+             AG+  +A  L+  +L +G+ P  +  ++L
Sbjct: 307 AVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSL 364



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 2/131 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  +F Q+   G  P++ TY  +I G+CS  ++D  ++LF ++ C  + P+
Sbjct: 622 LCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 681

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLE--KGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            + +  L    CK GR   A  +  +  E  +        Y   +DG  ++  M+ A   
Sbjct: 682 HVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGF 741

Query: 120 YEEMCENNISP 130
             +M      P
Sbjct: 742 VRDMVRGGQLP 752



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 16/154 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    +A  K+   + DRG  PD  T+ TI+CG C   ++DEA  + +++    + P 
Sbjct: 54  LSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPY 113

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T + L    C  G M+ A     ++LE  P AN   Y+ ++    K+  +  A ++  
Sbjct: 114 FATSSFLAHELCLRGSMERAF----QLLEIMPVANSSAYNIVVVALCKAARVDDALELAR 169

Query: 122 EMCENNISPNI------------AGRPTEAMQLY 143
            M E  I                +GR  EA+Q+Y
Sbjct: 170 TMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVY 203



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ P  + + ++I G+C++ R  EAV++F  +      P    + +LID+  K    + 
Sbjct: 4   QGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECH-SPYPDVYNVLIDSLSKRQETEA 62

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
              M   M+++G   +  T++ ++ G  K+  M  A  V +EM    I P  A
Sbjct: 63  VKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFA 115


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   +  A++L   +   G  PDI+TYNT++ G+C +  L  A +L  +++ V L+PN I
Sbjct: 29  RNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVI 88

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LIDA+CK   ++DA  M+ +M  K    +VVTY+C+++G  KS  ++ A  V+ EM
Sbjct: 89  TYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREM 148

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            E  + PN     T    L DS+ + G + +  +L
Sbjct: 149 EEVGVVPNRFSYAT----LIDSLFKEGNVAEAFVL 179



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KL G+++   LEP++ITY T+I  YC    L++A+ +++++T   L P+ +T+T 
Sbjct: 68  LFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTC 127

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  CK G++++A  +F +M E G   N  +Y+ LID  FK  N+  AF +   M    
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I  ++            AG    A  ++  +L   ++P+ +  S L D
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALID 235



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  +F  L +  L P+ +TY+ +I G+C L  +++   L +++    + PN
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I ++ ++D + K+G +++A  +  KM+++    NV  Y  LIDGYFK+     A D+++
Sbjct: 262 VIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFK 321

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    +  N             +GR  EA +L+  M+  G++PD +  +++ D
Sbjct: 322 EMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMD 375



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  A  L G++  RG+  D++ Y  ++ G       + A  +F+ L    L PN
Sbjct: 167 LFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPN 226

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK G ++   ++  +M EK    NV+ YS ++DGY K   +  A DV  
Sbjct: 227 CVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMR 286

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M + NI PN+            A +   A+ L+  M   G+  +  ++ +  + NL+ S
Sbjct: 287 KMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVN-NLKRS 345

Query: 170 GSQEHC 175
           G  E  
Sbjct: 346 GRMEEA 351



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 47/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL ++ ++T + L PD++TY  I+ G C   +++EA  +F ++  V + PN  ++  
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162

Query: 68  LIDAFCKEGRMDDATM-----------------------------------MFSKMLEKG 92
           LID+  KEG + +A +                                   MF  +LE+ 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
              N VTYS LIDG+ K  ++     + +EM E +I PN+             G   EAM
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
            +   M++  I+P+  +  TL D
Sbjct: 283 DVMRKMVQRNILPNVFVYGTLID 305



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 47/199 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----------LN------------ 41
           KE +L  ALKL  ++   GL+P+ IT N ++   C+          LN            
Sbjct: 448 KEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPT 507

Query: 42  -------------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                        R D  + + ++L  + +K +  T+  LI  FC+ G +  AT++F  M
Sbjct: 508 THKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDM 567

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-----------AGR-P 136
           + KG  A+++TY+ LI GY  S ++K AF V+ +M    +SPN+           A R  
Sbjct: 568 MGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLI 627

Query: 137 TEAMQLYDSMLRNGIMPDG 155
            EA  L + M   G++P+ 
Sbjct: 628 KEAAGLVNQMKERGLVPNA 646



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 12/146 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +N +I GYC    +  AV+L E +      P+ +T+  L++ FCK G +  A  +  ++ 
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
               + NV+TY+ LID Y KSQ ++ A  +Y+EM   ++ P++            +G+  
Sbjct: 80  LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EA  ++  M   G++P+    +TL D
Sbjct: 140 EAKSVFREMEEVGVVPNRFSYATLID 165



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A+ +  ++  R + P++  Y T+I GY   ++   A+ LF+++    L+ N+ 
Sbjct: 274 KKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNF 333

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
                ++   + GRM++A  +F  M+ +G   + V Y+ ++DG+FK+     AF++ +EM
Sbjct: 334 VIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEM 393

Query: 124 CENNISPNIAGRPT-----------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E +   ++                E+   +  M + G+ PD    +T+ +
Sbjct: 394 TEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMIN 444



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D  L +  QL   G++ D+ TYNT+I  +C L  +  A  +F+ +    +  + I
Sbjct: 518 KSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADII 577

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  +C    +  A  + S+ML +G   NV TY+ L+ G   ++ +K A  +  +M
Sbjct: 578 TYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQM 637

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
            E  + PN              G   E ++LY  M+  G +P
Sbjct: 638 KERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVP 679



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A  +  Q+   G+ P++ TYN ++ G  +   + EA  L  ++    L PN+ T+ 
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+    K G M +   ++ +M+ KG      TY+ LI  + K + M  A ++ +EM   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 127 NISPN 131
            I PN
Sbjct: 711 GIPPN 715



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 17/141 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIKE     A  L  Q+ +RGL P+  TY+ ++ G+  +  + E V+L+ ++      P 
Sbjct: 626 LIKE-----AAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPK 680

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK-------SQNMK 114
           + T+ +LI  F K  +M  A  +  +M  +G   N  TY  LI G++K       ++++K
Sbjct: 681 TRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLK 740

Query: 115 SAFD-----VYEEMCENNISP 130
            ++      ++EEM E    P
Sbjct: 741 RSYQAEAKRLFEEMNEKGFIP 761



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL PD  T+NT+I  YC    L  A++L  ++    LKPNSIT  IL+   C  G ++  
Sbjct: 431 GLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKT 490

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + ML  G      T+  ++D   KS+       +++++    +  +++        
Sbjct: 491 MDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLIST 550

Query: 134 ----GRPTEAMQLYDSMLRNGIMPD 154
               G    A  ++  M+  GI+ D
Sbjct: 551 FCRLGMIRRATLVFKDMMGKGILAD 575


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++ NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA   F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+ PD +  +TL B
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIB 325



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A + F ++  +GL P+ +T+ T+I G+C   R+D A ++++++    L P+
Sbjct: 222 LCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +   M  KG K + +TY+ LIBG  K  ++ SAF+  +
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRK 341

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI  +              GR  +A ++   ML   + PD
Sbjct: 342 RMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPD 386



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L   ++ +GL+PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 292 LCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML    K +  TY+ +I+ + K  ++     + +
Sbjct: 352 DVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLK 411

Query: 122 EMCENNISPNIA 133
           EM  +  +P++ 
Sbjct: 412 EMQRDGHAPSVV 423



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++   L++ + + G +D+   + S ML  G + +V TYS LI+G  K   M  A + ++
Sbjct: 177 VVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   A ++Y  ML   ++PD +  +TL  Y L   
Sbjct: 237 EMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLI-YGLCKK 295

Query: 170 G--SQEH 174
           G   Q H
Sbjct: 296 GDLKQAH 302



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 59/103 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD+A +   ++    +  D + Y  +I G C   R  +A ++  ++  V+LKP++ 
Sbjct: 329 KEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTG 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 15/171 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   ++ AL LF Q+   G  P+++TY T+I   C    L+ AV++F ++    ++PN 
Sbjct: 163 CHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNV 222

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  L+   C+ GR  DA  +   M+++G + NV+T++ LID + K   +  A ++Y+ 
Sbjct: 223 VTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKV 282

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M + ++ P++             GR  EA Q++  M  NG  P+ +  +TL
Sbjct: 283 MIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTL 333



 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
             G++   G EPD++T+ +++ G+C  NR+++A+ LF+++  +  +PN +T+T LI   C
Sbjct: 139 FLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLC 198

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K   ++ A  +F++M + G + NVVTY+ L+ G  +      A  +  +M +  I PN+ 
Sbjct: 199 KNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVI 258

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       G+  EA +LY  M++  + PD    + L +
Sbjct: 259 TFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALIN 300



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+++F Q+ D G+ P+++TYN+++ G C + R  +A  L   +    ++PN
Sbjct: 197 LCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPN 256

Query: 62  SITFTILIDAF-----------------------------------CKEGRMDDATMMFS 86
            ITFT LIDAF                                   C  GR+D+A  MF 
Sbjct: 257 VITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFY 316

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAG 134
            M   G   N VTY+ LI G+ KS+ ++    ++ EM +  +  N            + G
Sbjct: 317 LMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVG 376

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           RP  A ++++ M      PD    + L D
Sbjct: 377 RPDVAQEVFNQMGSRRAPPDIRTYNVLLD 405



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   +  A +L+  +    + PD+ TY  +I G C+  RLDEA Q+F  +      PN
Sbjct: 267 FVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPN 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI  FCK  R++D T +F +M +KG  AN +TY+ LI GY        A +V+ 
Sbjct: 327 EVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFN 386

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           +M      P+I         L D +  NG +   L++
Sbjct: 387 QMGSRRAPPDIRTYNV----LLDGLCYNGYVEKALMI 419



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ++ K    D  + LF Q+   G+ P + T N ++   C  ++   A     K+  +  +P
Sbjct: 91  VIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEP 150

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TFT L+  FC   R++DA  +F +++  G + NVVTY+ LI    K++++  A +++
Sbjct: 151 DLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIF 210

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +M +N I PN+             GR ++A  L   M++ GI P+ +  + L D
Sbjct: 211 NQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALID 265



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   K+F +++ +GL  + ITY  +I GYC + R D A ++F ++   +  P+  
Sbjct: 339 KSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIR 398

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+D  C  G ++ A M+F  M ++    N+VTY+ +I G  K   ++ AFD++  +
Sbjct: 399 TYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSL 458

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
               + PN+    T            EA  L+  M  +G +P+
Sbjct: 459 FSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A ++F  +   G  P+ +TY T+I G+C   R+++  ++F +++   L  N+IT+T+
Sbjct: 308 LDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTV 367

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C  GR D A  +F++M  +    ++ TY+ L+DG   +  ++ A  +++ M +  
Sbjct: 368 LIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKRE 427

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI             G+  +A  L+ S+   G+ P+ +  +T+
Sbjct: 428 MDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTM 473


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   +  A++L   +   G  PDI+TYNT++ G+C +  L  A +L  +++ V L+PN I
Sbjct: 29  RNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVI 88

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LIDA+CK   ++DA  M+ +M  K    +VVTY+C+++G  KS  ++ A  V+ EM
Sbjct: 89  TYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREM 148

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            E  + PN     T    L DS+ + G + +  +L
Sbjct: 149 EEVGVVPNRFSYAT----LIDSLFKEGNVAEAFVL 179



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KL G+++   LEP++ITY T+I  YC    L++A+ +++++T   L P+ +T+T 
Sbjct: 68  LFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTC 127

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  CK G++++A  +F +M E G   N  +Y+ LID  FK  N+  AF +   M    
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I  ++            AG    A  ++  +L   ++P+ +  S L D
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALID 235



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  +F  L +  L P+ +TY+ +I G+C L  +++   L +++    + PN
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I ++ ++D + K+G +++A  +  KM+++    NV  Y  LIDGYFK+     A D+++
Sbjct: 262 VIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFK 321

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    +  N             +GR  EA +L+  M+  G++PD +  +++ D
Sbjct: 322 EMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMD 375



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  A  L G++  RG+  D++ Y  ++ G       + A  +F+ L    L PN
Sbjct: 167 LFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPN 226

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK G ++   ++  +M EK    NV+ YS ++DGY K   +  A DV  
Sbjct: 227 CVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMR 286

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M + NI PN+            A +   A+ L+  M   G+  +  ++ +  + NL+ S
Sbjct: 287 KMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVN-NLKRS 345

Query: 170 GSQEHC 175
           G  E  
Sbjct: 346 GRMEEA 351



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 47/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL ++ ++T + L PD++TY  I+ G C   +++EA  +F ++  V + PN  ++  
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162

Query: 68  LIDAFCKEGRMDDATM-----------------------------------MFSKMLEKG 92
           LID+  KEG + +A +                                   MF  +LE+ 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
              N VTYS LIDG+ K  ++     + +EM E +I PN+             G   EAM
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
            +   M++  I+P+  +  TL D
Sbjct: 283 DVMRKMVQRNILPNVFVYGTLID 305



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 47/199 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----------LN------------ 41
           KE +L  ALKL  ++   GL+P+ IT N ++   C+          LN            
Sbjct: 448 KEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPT 507

Query: 42  -------------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                        R D  + + ++L  + +K +  T+  LI  FC+ G +  AT++F  M
Sbjct: 508 THKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDM 567

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-----------AGR-P 136
           + KG  A+++TY+ LI GY  S ++K AF V+ +M    +SPN+           A R  
Sbjct: 568 MGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLI 627

Query: 137 TEAMQLYDSMLRNGIMPDG 155
            EA  L + M   G++P+ 
Sbjct: 628 KEAAGLVNQMKERGLVPNA 646



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 12/146 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +N +I GYC    +  AV+L E +      P+ +T+  L++ FCK G +  A  +  ++ 
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
               + NV+TY+ LID Y KSQ ++ A  +Y+EM   ++ P++            +G+  
Sbjct: 80  LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EA  ++  M   G++P+    +TL D
Sbjct: 140 EAKSVFREMEEVGVVPNRFSYATLID 165



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A+ +  ++  R + P++  Y T+I GY   ++   A+ LF+++    L+ N+ 
Sbjct: 274 KKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNF 333

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
                ++   + GRM++A  +F  M+ +G   + V Y+ ++DG+FK+     AF++ +EM
Sbjct: 334 VIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEM 393

Query: 124 CENNISPNIAGRPT-----------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E +   ++                E+   +  M + G+ PD    +T+ +
Sbjct: 394 TEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMIN 444



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D  L +  QL   G++ D+ TYNT+I  +C L  +  A  +F+ +    +  + I
Sbjct: 518 KSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADII 577

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  +C    +  A  + S+ML +G   NV TY+ L+ G   ++ +K A  +  +M
Sbjct: 578 TYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQM 637

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
            E  + PN              G   E ++LY  M+  G +P
Sbjct: 638 KERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVP 679



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A  +  Q+   G+ P++ TYN ++ G  +   + EA  L  ++    L PN+ T+ 
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+    K G M +   ++ +M+ KG      TY+ LI  + K + M  A ++ +EM   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 127 NISPN 131
            I PN
Sbjct: 711 GIPPN 715



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 17/141 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIKE     A  L  Q+ +RGL P+  TY+ ++ G+  +  + E V+L+ ++      P 
Sbjct: 626 LIKE-----AAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPK 680

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK-------SQNMK 114
           + T+ +LI  F K  +M  A  +  +M  +G   N  TY  LI G++K       ++++K
Sbjct: 681 TRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLK 740

Query: 115 SAFD-----VYEEMCENNISP 130
            ++      ++EEM E    P
Sbjct: 741 RSYQAEAKRLFEEMNEKGFIP 761



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL PD  T+NT+I  YC    L  A++L  ++    LKPNSIT  IL+   C  G ++  
Sbjct: 431 GLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKT 490

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + ML  G      T+  ++D   KS+       +++++    +  +++        
Sbjct: 491 MDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLIST 550

Query: 134 ----GRPTEAMQLYDSMLRNGIMPD 154
               G    A  ++  M+  GI+ D
Sbjct: 551 FCRLGMIRRATLVFKDMMGKGILAD 575


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   +  A++L   +   G  PDI+TYNT++ G+C +  L  A +L  +++ V L+PN I
Sbjct: 29  RNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVI 88

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LIDA+CK   ++DA  M+ +M  K    +VVTY+C+++G  KS  ++ A  V+ EM
Sbjct: 89  TYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREM 148

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            E  + PN     T    L DS+ + G + +  +L
Sbjct: 149 EEVGVVPNRFSYAT----LIDSLFKEGNVAEAFVL 179



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KL G+++   LEP++ITY T+I  YC    L++A+ +++++T   L P+ +T+T 
Sbjct: 68  LFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTC 127

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  CK G++++A  +F +M E G   N  +Y+ LID  FK  N+  AF +   M    
Sbjct: 128 IMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I  ++            AG    A  ++  +L   ++P+ +  S L D
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALID 235



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  +F  L +  L P+ +TY+ +I G+C L  +++   L +++    + PN
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPN 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I ++ ++D + K+G +++A  +  KM+++    NV  Y  LIDGYFK+     A D+++
Sbjct: 262 VIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFK 321

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    +  N             +GR  EA +L+  M+  G++PD +  +++ D
Sbjct: 322 EMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMD 375



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  A  L G++  RG+  D++ Y  ++ G       + A  +F+ L    L PN
Sbjct: 167 LFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPN 226

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK G ++   ++  +M EK    NV+ YS ++DGY K   +  A DV  
Sbjct: 227 CVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMR 286

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M + NI PN+            A +   A+ L+  M   G+  +  ++ +  + NL+ S
Sbjct: 287 KMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVN-NLKRS 345

Query: 170 GSQEHC 175
           G  E  
Sbjct: 346 GRMEEA 351



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 47/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL ++ ++T + L PD++TY  I+ G C   +++EA  +F ++  V + PN  ++  
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162

Query: 68  LIDAFCKEGRMDDATM-----------------------------------MFSKMLEKG 92
           LID+  KEG + +A +                                   MF  +LE+ 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
              N VTYS LIDG+ K  ++     + +EM E +I PN+             G   EAM
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
            +   M++  I+P+  +  TL D
Sbjct: 283 DVMRKMVQRNILPNVFVYGTLID 305



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 47/199 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +L  ALKL  ++   GL+P+ IT N ++   C+   +++ + L   +  +   P   
Sbjct: 448 KEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPT 507

Query: 64  TFTILIDA-----------------------------------FCKEGRMDDATMMFSKM 88
           T   ++DA                                   FC+ G +  AT++F  M
Sbjct: 508 THKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDM 567

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-----------AGR-P 136
           + KG  A+++TY+ LI GY  S ++K AF V+ +M    +SPN+           A R  
Sbjct: 568 MGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLI 627

Query: 137 TEAMQLYDSMLRNGIMPDG 155
            EA  L + M   G++P+ 
Sbjct: 628 KEAAGLVNQMKERGLVPNA 646



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 12/146 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +N +I GYC    +  AV+L E +      P+ +T+  L++ FCK G +  A  +  ++ 
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
               + NV+TY+ LID Y KSQ ++ A  +Y+EM   ++ P++            +G+  
Sbjct: 80  LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EA  ++  M   G++P+    +TL D
Sbjct: 140 EAKSVFREMEEVGVVPNRFSYATLID 165



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A+ +  ++  R + P++  Y T+I GY   ++   A+ LF+++    L+ N+ 
Sbjct: 274 KKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNF 333

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
                ++   + GRM++A  +F  M+ +G   + V Y+ ++DG+FK+     AF++ +EM
Sbjct: 334 VIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEM 393

Query: 124 CENNISPNIAGRPT-----------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E +   ++                E+   +  M + G+ PD    +T+ +
Sbjct: 394 TEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMIN 444



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D  L    QL   G++ D+ TYNT+I  +C L  +  A  +F+ +    +  + I
Sbjct: 518 KSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADII 577

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  +C    +  A  + S+ML +G   NV TY+ L+ G   ++ +K A  +  +M
Sbjct: 578 TYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQM 637

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
            E  + PN              G   E ++LY  M+  G +P
Sbjct: 638 KERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVP 679



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A  +  Q+   G+ P++ TYN ++ G  +   + EA  L  ++    L PN+ T+ 
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+    K G M +   ++ +M+ KG      TY+ LI  + K + M  A ++ +EM   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 127 NISPN 131
            I PN
Sbjct: 711 GIPPN 715



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 17/141 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIKE     A  L  Q+ +RGL P+  TY+ ++ G+  +  + E V+L+ ++      P 
Sbjct: 626 LIKE-----AAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPK 680

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK-------SQNMK 114
           + T+ +LI  F K  +M  A  +  +M  +G   N  TY  LI G++K       ++++K
Sbjct: 681 TRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLK 740

Query: 115 SAFD-----VYEEMCENNISP 130
            ++      ++EEM E    P
Sbjct: 741 RSYQAEAKRLFEEMNEKGFIP 761



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL PD  T+NT+I  YC    L  A++L  ++    LKPNSIT  IL+   C  G ++  
Sbjct: 431 GLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKT 490

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             + + ML  G      T+  ++D   KS+        ++++    +  +++        
Sbjct: 491 MDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLIST 550

Query: 134 ----GRPTEAMQLYDSMLRNGIMPD 154
               G    A  ++  M+  GI+ D
Sbjct: 551 FCRLGMIRRATLVFKDMMGKGILAD 575


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L    KL   +  +G  P+ +TYNT+I G C   +LD+AV L E++   +  PN
Sbjct: 267 LCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPN 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+   K+ R  DA  + S M E+G   N   YS LI G FK    + A  ++ 
Sbjct: 327 DVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWR 386

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E    PNI             G+P EA ++ + M+ +G +P+    S+L
Sbjct: 387 KMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSL 438



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+     A++L   + +RG   +   Y+ +I G     + +EA+ L+ K+     KPN
Sbjct: 337 LVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPN 396

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +++L+D  C+EG+ ++A  + ++M+  G   N  TYS L+ G+FK+   + A  V++
Sbjct: 397 IVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWK 456

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +   S N              GR  EAM ++  ML  GI PD +  S++
Sbjct: 457 EMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSI 508



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+++F  + +R   PD  TY T++ G C   R+DEAV L +++      P+ + + +
Sbjct: 203 VDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK+G +   T +   M  KG   N VTY+ LI G      +  A  + E M  + 
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             PN       I G     R T+A++L  SM   G   +  + S L     +   ++E
Sbjct: 323 CIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEE 380



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A+ L  ++   G  P  + YN +I G C    L    +L + +      PN
Sbjct: 232 LCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPN 291

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   C +G++D A  +  +M+      N VTY  LI+G  K +    A  +  
Sbjct: 292 EVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLS 351

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E     N              G+  EAM L+  M   G  P+ ++ S L D
Sbjct: 352 SMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVD 405



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 50/220 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----------LNRL-------- 43
           L KE   + A+ L+ ++ ++G +P+I+ Y+ ++ G C           LNR+        
Sbjct: 372 LFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPN 431

Query: 44  -----------------DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                            +EAVQ+++++       N   +++LID  C  GR+ +A M++S
Sbjct: 432 AYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWS 491

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC---ENNISPNIAGRP------- 136
           KML  G K + V YS +I G     +M +A  +Y EM    E    P++           
Sbjct: 492 KMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLC 551

Query: 137 -----TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
                + A+ L +SML  G  PD +  +T  +   + S S
Sbjct: 552 MQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNS 591



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P+ +++N +I   C L  +D A+++F  +   +  P+  T+  L+D  CKE R+D+A 
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----------- 131
           ++  +M  +G   + V Y+ LIDG  K  ++     + + M      PN           
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + G+  +A+ L + M+ +  +P+ +   TL +
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLIN 335



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 18/175 (10%)

Query: 5   ECHL-DAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC----VQL 58
           + HL D A+ LF ++ D    +  + ++N+++    +       ++ ++ +      + +
Sbjct: 124 KAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNI 183

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            PN ++F ++I A CK   +D A  +F  M E+    +  TY  L+DG  K + +  A  
Sbjct: 184 SPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVL 243

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + +EM     SP+              G  T   +L D+M   G +P+ +  +TL
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTL 298



 Score = 36.2 bits (82), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 8   LDAALKLFGQL---TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +DAALKL+ ++    +   +PD++TYN ++ G C    +  AV L   +      P+ IT
Sbjct: 518 MDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVIT 577

Query: 65  FTILIDAFC-KEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
               ++    K    D       +++ +  K   V+ +C I
Sbjct: 578 CNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTI 618


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 12/176 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL L  ++ ++G+E D+  Y T+I G C + +LDEA  L  K+    L+PN++ +T +
Sbjct: 426 ERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTI 485

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +DAF K G+  +A  +  K+ + G + NVVTY  LIDG  K+ ++  A   +++M E  +
Sbjct: 486 MDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGL 545

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            PN+             G  ++A+ L + M+  G+  D ++ ++L D +++    Q
Sbjct: 546 DPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQ 601



 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KLF Q+  RG+ P+  TY +++ G C   RLD+A+ L +++    L PN +
Sbjct: 316 KEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 375

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T+++D  CKEG++  A  + S M   G KAN + Y+ LI G+F ++N + A D+  EM
Sbjct: 376 TYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEM 435

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               +  +++   T            EA  L   M   G+ P+ ++ +T+ D   ++   
Sbjct: 436 KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKE 495

Query: 172 QE 173
            E
Sbjct: 496 SE 497



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ D GL+P+++TY  +I G C    + EA+  F+K+  + L PN   +T LID
Sbjct: 498 AVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLID 557

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK G +  A  + ++M++KG   + V Y+ LIDG+ K  +++ AF +  +M E  +  
Sbjct: 558 GFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQL 617

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +       I+G        EA  +   M+  GI PD
Sbjct: 618 DLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPD 653



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 69/124 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A   FG++   G+  +++T +T +  +C    + EA++LF ++    + PN  T+T 
Sbjct: 285 IEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTS 344

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK GR+DDA ++  +M+ +G   NVVTY+ ++DG  K   +  A DV   M    
Sbjct: 345 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAG 404

Query: 128 ISPN 131
           +  N
Sbjct: 405 VKAN 408



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  L  ++ D GL P+ + Y TI+  +    +  EAV L  K+    L+PN
Sbjct: 454 LCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPN 513

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK G + +A   F KM E G   NV  Y+ LIDG+ K  ++  A  +  
Sbjct: 514 VVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMN 573

Query: 122 EMCENNIS 129
           EM +  +S
Sbjct: 574 EMVDKGMS 581



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  LF ++   G  PD++TYN++I GY     L+E   L  ++       +
Sbjct: 209 LCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAAD 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ F K G ++ A   F +M   G  ANVVT S  +D + K   ++ A  ++ 
Sbjct: 269 VVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFA 328

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    + PN             AGR  +A+ L D M+  G++P+ +  + + D
Sbjct: 329 QMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVD 382



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++   G   D++TYN +I  +     +++A   F ++  + +  N +T +  +DAFC
Sbjct: 256 LVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFC 315

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           KEG + +A  +F++M  +G   N  TY+ L+DG  K+  +  A  + +EM    + PN+ 
Sbjct: 316 KEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 375

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                       G+   A  +   M R G+  + LL +TL   +  +  S+ 
Sbjct: 376 TYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSER 427



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 16  GQLTDRGLE----PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           G L  R  E    P++ T+N +I   C    L EA  LF ++  +   P+ +T+  LID 
Sbjct: 184 GGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDG 243

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           + K G +++  ++ S+M + G  A+VVTY+ LI+ + K   ++ A+  + EM    +  N
Sbjct: 244 YGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMAN 303

Query: 132 IA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             G   EAM+L+  M   G+MP+    ++L D
Sbjct: 304 VVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVD 347



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+ L  ++  +GL P+++TY  ++ G C   ++  A  +   +    +K N +
Sbjct: 351 KAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANEL 410

Query: 64  TFTILIDA-----------------------------------FCKEGRMDDATMMFSKM 88
            +T LI                                      CK  ++D+A  +  KM
Sbjct: 411 LYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKM 470

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
            + G + N V Y+ ++D +FK+     A  +  ++ ++ + PN+            AG  
Sbjct: 471 DDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSI 530

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA+  +D M   G+ P+  + +TL D
Sbjct: 531 YEAISHFDKMRELGLDPNVQVYTTLID 557



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 55/116 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ L  ++ D+G+  D + Y ++I G+     L  A  L  K+    L+ +   +T 
Sbjct: 565 LSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTC 624

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            I  FC    M +A  + S+M+  G   +   Y+CLI  Y K  NM+ A  +  EM
Sbjct: 625 FISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEM 680



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 46/86 (53%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+  L  A  L  ++ + GL+ D+  Y   I G+C++N + EA  +  ++    + P+ 
Sbjct: 595 MKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDK 654

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKM 88
             +  LI  + K G M++A+ + ++M
Sbjct: 655 TAYNCLIRKYQKLGNMEEASSLQNEM 680


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 9   DAALKLFGQLTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPNSITF 65
           D A+ LF Q+      + PD +TYNT++ G+C   RL EA  LFE +      +PN +T+
Sbjct: 129 DKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTY 188

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           ++LID +CK G + +   +  +M  +G KA+V  YS LI  +    ++++  ++++EM  
Sbjct: 189 SVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLR 248

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +SPN+             GR  EA ++   M   G+ PD +  + LAD
Sbjct: 249 RKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLAD 298



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--VQLK 59
           L KE  +D A  +   +  +G +PD +TYNT++ G C   ++ EA+ L++ L      +K
Sbjct: 335 LCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVK 394

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+  T   LI   CKEGR+ DA  + S M+E G + N+VTY+ LI+GY  ++ +  A  +
Sbjct: 395 PDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKL 454

Query: 120 YEEMCENNISPN 131
           ++   E+  SPN
Sbjct: 455 WKYAVESGFSPN 466



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  ++   +LF ++  R + P+++TY+ ++ G     R  EA ++ + +T   ++P+ + 
Sbjct: 233 EGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVA 292

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T+L D  CK GR  DA  +   M++KG +   +TY+ +++G  K   M  AF V E M 
Sbjct: 293 YTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMV 352

Query: 125 ENNISPNI------------AGRPTEAMQLYDSML--RNGIMPD 154
           +    P+             AG+  EAM L+  +L  +  + PD
Sbjct: 353 KKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPD 396



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A ++   + + GL+ +I+TYN +I GY +  +L EA++L++        PN
Sbjct: 407 LCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPN 466

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T++++I+  CK   +  A  +F KM + G +  V+ Y+ L+    +  +++ A  +++
Sbjct: 467 SMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQ 526

Query: 122 EMCENN-----ISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   N     +S NI       AG    A +L   M    ++PD +  S L
Sbjct: 527 EMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSIL 578



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +   L L  ++   GL+ D+  Y+++I  +C    ++   +LF+++   ++ PN +
Sbjct: 197 KSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVV 256

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ L+    + GR  +A+ M   M  +G + +VV Y+ L DG  K+     A  V + M
Sbjct: 257 TYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLM 316

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +    P        + G     R  +A  + + M++ G  PD +  +TL
Sbjct: 317 VQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTL 366



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  LF ++ D G+ P +I YN ++   C  + L++A  LF+++  V    + ++F I
Sbjct: 483 LSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNI 542

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   K G +  A  + S+M       + VT+S LI+ + K   +  A  +YE+M    
Sbjct: 543 IIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCG 602

Query: 128 ISPNIAGRPTEAMQLYDSMLR 148
             P +         ++DS+L+
Sbjct: 603 HVPGVV--------VFDSLLK 615



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 66/127 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+ A  LF ++ +     D++++N II G      +  A +L  ++  + L P+
Sbjct: 512 LCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPD 571

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TF+ILI+ F K G +D+A  ++ KM+  G    VV +  L+ GY      +    +  
Sbjct: 572 AVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLH 631

Query: 122 EMCENNI 128
           +M + ++
Sbjct: 632 QMADKDV 638



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 76/175 (43%), Gaps = 15/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    DA + ++ ++    + P   + + +   + + +    A  +   +T      N
Sbjct: 52  LRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVN 111

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDV 119
                +++  FC+ G+ D A  +FS+M         + VTY+ L++G+ K++ +  A  +
Sbjct: 112 VYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVL 171

Query: 120 YEEMCE-NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +E M +  +  PN+            +G   E + L + M R G+  D  + S+L
Sbjct: 172 FEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSL 226


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 12/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  K   LD A +LF  +TDRG  PDI TYN +I G C  NR+D+A QL E++T     P
Sbjct: 385 MFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPP 444

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  ++   CK  ++D+A  ++  +   G   +VVT S LIDG  KS+ +  A  + 
Sbjct: 445 DVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLL 504

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            EM  N  +P++            A +  +++  +  ML  G +P  +  S + D   +S
Sbjct: 505 REMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS 564

Query: 169 SGSQEHCI 176
           +  ++ C+
Sbjct: 565 ARVRDGCM 572



 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A KL  ++   G  PD++ Y  +I G+C  ++LD+++  F ++      P 
Sbjct: 491 LCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT 550

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++I+ID  CK  R+ D  M+   MLE+G   + + Y+ +IDG  KS +   A+++Y+
Sbjct: 551 VITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYK 610

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M +   +P +              R  EA+ L + M  +G +PD +  +++ D   +S+
Sbjct: 611 LMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSA 670



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 18/182 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +   + + G  P+++TYNT+I G+C L  +DEAV LF ++      P+
Sbjct: 246 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD 305

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ILID +CK+ R  D   +  +M++ G + N +TY+ L+D   KS     AF++ +
Sbjct: 306 VFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQ 365

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M   +  P+              G+   A +L+  M   G +PD      +  YN+  S
Sbjct: 366 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPD------IYTYNIMIS 419

Query: 170 GS 171
           G+
Sbjct: 420 GA 421



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 47/204 (23%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----------TCV 56
            +D A +L  ++T+ G  PD++TYN+I+ G C  +++DEA +++E L          TC 
Sbjct: 426 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 485

Query: 57  QL-------------------------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
            L                          P+ + +TILI  FCK  ++D +   FS+ML+K
Sbjct: 486 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 545

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G    V+TYS +ID   KS  ++    + + M E  ++P+             +    EA
Sbjct: 546 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEA 605

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
            +LY  M + G  P  +  + L D
Sbjct: 606 YELYKLMKQTGCAPTVVTYNVLVD 629



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D+AL  +  +  R   P +ITY  ++   C   R+ +A  + E +      PN +T+ 
Sbjct: 217 RVDSALVHYRDM-QRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYN 275

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+ FCK G MD+A ++F++MLE     +V TY+ LIDGY K +  +    + +EM + 
Sbjct: 276 TLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKY 335

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN             +G+  +A  L   MLR    P     + + D
Sbjct: 336 GCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMID 384



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 65/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +     L   + +RG+ PD I Y ++I G C  +  DEA +L++ +      P 
Sbjct: 561 LCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPT 620

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +L+D  CK  R+D+A  +   M   G   + VTY+ + DG++KS     AF +++
Sbjct: 621 VVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQ 680

Query: 122 EMCENNISPN 131
            M     SP 
Sbjct: 681 AMKSRGCSPT 690



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  L   +  R  +P   T+N +I  +C + +LD A +LF+ +T     P+
Sbjct: 351 LVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPD 410

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I   C+  R+DDA  +  +M E G   +VVTY+ ++ G  K+  +  A++VYE
Sbjct: 411 IYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE 470

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +       ++            + R  +A +L   M RNG  PD +  + L
Sbjct: 471 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTIL 522



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL  ++   G EP+ ITYNT++       +  +A  L + +     KP+  TF ++ID F
Sbjct: 327 KLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMF 386

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           CK G++D A  +F  M ++G   ++ TY+ +I G  ++  +  A  + E M E    P++
Sbjct: 387 CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDV 446

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       A +  EA ++Y+ +   G   D +  STL D
Sbjct: 447 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLID 489



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 49/204 (24%)

Query: 8   LDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           LD A+K F   T + G +    T N ++  +    +  EA  LF+   C    P+SIT++
Sbjct: 112 LDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYS 171

Query: 67  ILIDAFCK-----------------------------------EGRMDDATMMFSKMLEK 91
            LI+ FCK                                    GR+D A + +  M ++
Sbjct: 172 TLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QR 230

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA 139
               +V+TY+ L+D   KS  +  A  + E+M E   +PN+             G   EA
Sbjct: 231 NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA 290

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
           + L++ ML N   PD    + L D
Sbjct: 291 VVLFNQMLENSCSPDVFTYNILID 314


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L+ Q+  + + PD  T N++I G+C + +L EAV L  K+    + P   TF+I
Sbjct: 226 VNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSI 285

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DAFCKEG++ +A MM    ++K    +VVTY+ L+DGY   + +  A D+++ M    
Sbjct: 286 LVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRG 345

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  N+    T            EA+ L++ M    I+P+ +  ++L D
Sbjct: 346 VIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLID 393



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            LKL  ++ DRG  P+IITYN+I+   C  + +D+A+ L   L    ++P+  T+T+LI 
Sbjct: 404 VLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIK 463

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ G+++DA  +F  +L KG   +V TY+ +I G+       +A  +  +M +N   P
Sbjct: 464 GLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIP 523

Query: 131 NIAGRPTEAMQLYD 144
           N        + L++
Sbjct: 524 NAKTYEIVILSLFE 537



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +  +FG++  +G +P+ IT+NT+I G C    + +A+   +K+       + +++  LI+
Sbjct: 124 SFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLIN 183

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+  A  +  ++  K  + N V Y+ +ID   K++ +  AFD+Y +M    ISP
Sbjct: 184 GLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISP 243

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +            I G+  EA+ L   M+   I P     S L D
Sbjct: 244 DDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVD 288



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 87/161 (54%), Gaps = 14/161 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +F  +  RG+  ++ +Y T+I G C +  +DEAV LFE++ C ++ PN
Sbjct: 327 LVKE--INKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPN 384

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID   K G++     +  +M ++G   N++TY+ ++D   K+ ++  A  +  
Sbjct: 385 VVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLT 444

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
            + +  I P++            +G+  +A ++++ +L  G
Sbjct: 445 NLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKG 485



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 62/122 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D A+ L   L D+G+ PD+ TY  +I G C   +L++A ++FE L       +
Sbjct: 430 LCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLD 489

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I  FC +G  D A  + SKM + G   N  TY  +I   F+      A  +  
Sbjct: 490 VYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLR 549

Query: 122 EM 123
           EM
Sbjct: 550 EM 551



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  AL    ++  +G   D ++Y T+I G C + R+  A+QL +++    ++PN++ + 
Sbjct: 155 HIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYN 214

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++ID  CK   ++DA  ++S+M+ K    +  T + LI G+     +K A  +  +M   
Sbjct: 215 MIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILE 274

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI+P +             G+  EA  +    ++  I+ D +  ++L D
Sbjct: 275 NINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMD 323



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  + G    + +  D++TYN+++ GYC +  +++A  +F+ +    +  N  
Sbjct: 292 KEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQ 351

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++T +I+  CK   +D+A  +F +M  +    NVVTY+ LIDG  K   +     + +EM
Sbjct: 352 SYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEM 411

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
            +    PNI    +            +A+ L  ++   GI PD
Sbjct: 412 HDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPD 454



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   AL L  Q+   G+  D  T+N +I  +  L     +  +F K+      PN
Sbjct: 80  LVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPN 139

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITF  LI   C +G +  A     K++ +G   + V+Y  LI+G  K   + +A  + +
Sbjct: 140 AITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLK 199

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +    + PN             A    +A  LY  M+   I PD    ++L
Sbjct: 200 RVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSL 251



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  +   P II +N I+           A+ L +++    +  +  TF ILI+ F + G 
Sbjct: 61  LHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGL 120

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------ 131
              +  +F K+L+KG   N +T++ LI G     ++  A + ++++       +      
Sbjct: 121 NSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGT 180

Query: 132 ------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   GR T A+QL   +    + P+ ++ + + D
Sbjct: 181 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIID 218



 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A K+F  L  +G   D+ TY  +I G+C     D A+ L  K+      PN+ T+ I
Sbjct: 471 LEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEI 530

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG 92
           +I +  ++   D A  +  +M+ +G
Sbjct: 531 VILSLFEKDENDMAEKLLREMIARG 555


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +++ A  L+ ++  R +  +I+TY+ +I G+C + +L +A+ LF K+T   + P+  
Sbjct: 222 KDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVY 281

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+DAFCKEGR+ +A    + M+++G K ++VTY+ L+DGY     +  A  +   M
Sbjct: 282 TFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTM 341

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
               ++  +                 +AM+L+  M    I P+ +  ++L D
Sbjct: 342 SHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLID 393



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 74/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL+L   + DRG +PDIITY++I+   C  + +D+A+ L  KL    ++PN
Sbjct: 395 LCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPN 454

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILID  CK GR++DA  +F  +L KG    V TY+ +I G+        A  +  
Sbjct: 455 MYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLS 514

Query: 122 EMCENNISPN 131
           +M +N+  P+
Sbjct: 515 KMKDNSCIPD 524



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +  ++   G EPD IT NT I G+C   ++ +A+   +KL  +    + +++  LI+
Sbjct: 124 AFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLIN 183

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G    A  +  ++  K  + +VV YS +ID   K +N+  AFD+Y EM    IS 
Sbjct: 184 GLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISS 243

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N            I G+  +A+ L++ M    I PD    + L D
Sbjct: 244 NIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVD 288



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KLF ++  + + P++ITYN++I G C   R+  A++L + +     +P+ IT++ 
Sbjct: 366 VDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSS 425

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN- 126
           ++DA CK   +D A  +  K+ ++G + N+ TY+ LIDG  K   ++ A +++E++    
Sbjct: 426 ILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKG 485

Query: 127 -NISPNI----------AGRPTEAMQLYDSMLRNGIMPDGL 156
            N++ N            G   EA+ L   M  N  +PD +
Sbjct: 486 YNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAI 526



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +   ++ RG+   + +YN +I G+C +  +D+A++LF+++   Q+ PN IT+  
Sbjct: 331 VNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNS 390

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+  A  +   M ++G + +++TYS ++D   K+  +  A  +  ++ +  
Sbjct: 391 LIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQG 450

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I PN+             GR  +A  +++ +L  G
Sbjct: 451 IRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKG 485



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 69/124 (55%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL+L  ++  + ++ D++ Y+TII   C    +++A  L+ ++   ++  N +T++ LI
Sbjct: 193 AALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALI 252

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC  G++ DA  +F+KM  +    +V T++ L+D + K   +K A +    M +  I 
Sbjct: 253 SGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK 312

Query: 130 PNIA 133
           P+I 
Sbjct: 313 PDIV 316



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 59/122 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  +L D+G+ P++ TY  +I G C   RL++A  +FE L        
Sbjct: 430 LCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLT 489

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I  FC  G  D+A  + SKM +     + +TY  +I   F       A  +  
Sbjct: 490 VNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLR 549

Query: 122 EM 123
           EM
Sbjct: 550 EM 551



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 55/113 (48%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ LF  L  +   P  + +  I+            + LF+K+    +KPN + F ILI+
Sbjct: 54  AVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILIN 113

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            FC+ G +  A  + +K+L+ G + + +T +  I G+     +  A + ++++
Sbjct: 114 CFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKL 166



 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  +F  L  +G    + TY  +I G+CS    DEA+ L  K+      P+
Sbjct: 465 LCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPD 524

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +IT+ I+I +   +   D A  +  +M+ +G
Sbjct: 525 AITYEIIICSLFDKDENDKAEKLLREMITRG 555


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++T +G+  +++TY+T+I G+C + +L EA+ L   +    + PN  T+ IL+D
Sbjct: 152 AYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVD 211

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CKEG++ +A  + + ML+   K+NV+TYS L+DGYF    +K A  V+  M    ++P
Sbjct: 212 ALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTP 271

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMP 153
           ++              R  +A+ L+  M+ +   P
Sbjct: 272 DVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP 306



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++T +G+  D++TY+T+I G+C + +L EA+ L  ++    + P+  T+TIL+D
Sbjct: 466 AYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVD 525

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  KEG++ +A  + + ML+   K +V TY+ L++GY     +K A  V+  M    ++P
Sbjct: 526 ALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTP 585

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++            +    EA+ L+  M +  ++PD +  S+L D
Sbjct: 586 DVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVD 630



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +     L  ++ DRG   D+ITYN++I G C    LD+A+ LF K+    ++PN
Sbjct: 632 LCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPN 691

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + TFTIL+D  CK GR+ DA  +F  +L KG   +V  Y+ +I G+ K   ++ A  +  
Sbjct: 692 TFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLS 751

Query: 122 EMCENNISPN 131
           +M EN   PN
Sbjct: 752 KMEENGCIPN 761



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  ++  G+ PD+ TY  +I G+C    +DEA+ LF+++    + P+++T++ L+D
Sbjct: 571 AQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVD 630

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+     +  +M ++G  A+V+TY+ LIDG  K+ ++  A  ++ +M +  I P
Sbjct: 631 GLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRP 690

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N              GR  +A +++  +L  G   D
Sbjct: 691 NTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLD 726



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +   +    ++PD+ TYNT++ GY  +  + +A  +F  ++ + + P+  
Sbjct: 529 KEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVH 588

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI+ FCK   +D+A  +F +M +K    + VTYS L+DG  KS  +   +D+ +EM
Sbjct: 589 TYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEM 648

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +     ++             G   +A+ L++ M   GI P+    + L D
Sbjct: 649 RDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLD 700



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL LF ++  + + PD +TY++++ G C   R+     L +++       + I
Sbjct: 599 KSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVI 658

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID  CK G +D A  +F+KM ++G + N  T++ L+DG  K   +K A +V++++
Sbjct: 659 TYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDL 718

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
                  ++             G   EA+ +   M  NG +P+ +
Sbjct: 719 LTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAV 763



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL    +L  +G + + ++Y T+I G C +     A++L  K+     KPN   ++
Sbjct: 392 QVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYS 451

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +IDA CK   + +A  +FS+M  KG  A+VVTYS LI G+     +K A  +  EM   
Sbjct: 452 TIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLK 511

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I+P++             G+  EA  +   ML+  + PD    +TL +
Sbjct: 512 TINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMN 560



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL    +L  +G + + ++Y T+I G C +     A++   K+     KPN   + 
Sbjct: 78  QVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYN 137

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +IDA CK   + +A  +FS+M  KG  ANVVTYS LI G+     +K A  +   M   
Sbjct: 138 TIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLK 197

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I+PN+             G+  EA  +   ML+  +  + +  STL D
Sbjct: 198 TINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMD 246



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 64/122 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ LF ++ D+G+ P+  T+  ++ G C   RL +A ++F+ L       +
Sbjct: 667 LCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLD 726

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + ++I   CK+G +++A  M SKM E G   N VT+  +I+  FK      A  +  
Sbjct: 727 VYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLR 786

Query: 122 EM 123
           +M
Sbjct: 787 QM 788



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            +L +  ++  RG  PD +T NT+I G C   ++ EA+   +KL     + N +++  LI
Sbjct: 46  VSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLI 105

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           +  C+ G    A     K+  +  K NV  Y+ +ID   K Q +  A+ ++ EM    IS
Sbjct: 106 NGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGIS 165

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            N            I G+  EA+ L + M+   I P+    + L D
Sbjct: 166 ANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVD 211



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH+        +  ++  RG  P  +T NT+I G C   ++ +A+   +KL     + N 
Sbjct: 353 CHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ 412

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  LI+  CK G    A  +  K+  +  K NV  YS +ID   K Q +  A+ ++ E
Sbjct: 413 VSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSE 472

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    IS +            I G+  EA+ L + M+   I PD    + L D
Sbjct: 473 MTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVD 525



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   A+ L  +L  +G++PD+ T N +I  +C + ++     +  K+      P+++T  
Sbjct: 322 HYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLN 381

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C +G++  A     K+L +G + N V+Y+ LI+G  K  + + A  +  ++   
Sbjct: 382 TLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGR 441

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              PN+    T            EA  L+  M   GI  D +  STL
Sbjct: 442 LTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 488



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +    ++ ++ITY+T++ GY  +  + +A  +F  ++ + + P+
Sbjct: 213 LCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPD 272

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             ++ I+I+ FCK  R+D A  +F +M L + P   ++ ++ ++D + K ++  +A  + 
Sbjct: 273 VHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP--IIQFNKILDSFAKMKHYSTAVSLS 330

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +    I P++             G+ T    +   +L+ G  P  + L+TL
Sbjct: 331 HRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTL 383



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL L   +  + + P++ TYN ++   C   ++ EA  +   +    +K N IT++ 
Sbjct: 184 LKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYST 243

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +     +  A  +F+ M   G   +V +Y+ +I+G+ K + +  A ++++EM  + 
Sbjct: 244 LMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSR 303

Query: 128 ISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P I               + A+ L   +   GI PD   L+ L +
Sbjct: 304 FPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILIN 350



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 34/155 (21%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----------------- 53
           A  +F  ++  G+ PD+ +YN +I G+C + R+D+A+ LF+++                 
Sbjct: 257 AQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDS 316

Query: 54  --------TCVQL---------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
                   T V L         +P+  T  ILI+ FC  G++     + +K+L++G   +
Sbjct: 317 FAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPS 376

Query: 97  VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            VT + LI G      +K A   ++++       N
Sbjct: 377 TVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLN 411



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F  L  +G   D+  YN +I G+C    L+EA+ +  K+      PN
Sbjct: 702 LCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPN 761

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++TF I+I+A  K+   D A  +  +M+ +G
Sbjct: 762 AVTFDIIINALFKKDENDKAEKLLRQMIARG 792


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K+ G +  +G  P ++ +N +I G+C    LD A +L E +      PN  TFTI
Sbjct: 165 VELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTI 224

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK  R+ +A  +  KM+  G   NVVTYS +I+G  K   +  A+++++ M   N
Sbjct: 225 LITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRN 284

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN+            A R  EA QLY  M   G  PD +  ++L D
Sbjct: 285 CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLID 332



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A KL   + ++G  P++ T+  +I G C  NR+ EA QL EK+      PN +T++ 
Sbjct: 200 LDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYST 259

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK+G++DDA  +F  M  +    NVVT++ LIDG  K++ ++ A  +Y  M E  
Sbjct: 260 VINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG 319

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGI 151
            +P+I            + +  EA QL+ ++  +G+
Sbjct: 320 CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 355



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A +L  ++   G  P+++TY+T+I G C   ++D+A +LF+ +      PN
Sbjct: 229 LCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPN 288

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T  ILID  CK  R+++A  ++ +M E G   +++TY+ LIDG  KS  +  AF +++
Sbjct: 289 VVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQ 348

Query: 122 EMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPD 154
            + E+ +S   A             GR  +A +++  ++  G  PD
Sbjct: 349 TIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD 394



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 19/182 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP- 60
           L K   ++ A +L+ ++ + G  PDIITYN++I G C   ++DEA QLF+ +    +   
Sbjct: 299 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 358

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++T++ L   +   GRM DA  +FS +++KG   ++ TY+ LI  Y K+       ++ 
Sbjct: 359 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 418

Query: 121 EEMCENNISPNI-----------AGRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           EEM      P +            G  TE A+QL+DSM   G   D L+      YNL  
Sbjct: 419 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALI------YNLVV 472

Query: 169 SG 170
            G
Sbjct: 473 EG 474



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A++L  ++   G E + + + T++ G C   R+ EA++ F  +      P+ +T+T 
Sbjct: 25  LDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMA-KDCAPDVMTYTA 83

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ A CK G+ D+A  M  +M+ +G   + VT+S LIDG  K  + + AF V E++ +  
Sbjct: 84  LVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRG 143

Query: 128 ISPNIAGRPT 137
           +  + A   T
Sbjct: 144 MGNSDAAFET 153



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++++RG    + +YN ++ G   L R DEA Q+FE +      P   T  ++
Sbjct: 520 DDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVV 579

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C   ++DDA  +  +M + G   ++ T + LI GY KS     A  + EEM E  +
Sbjct: 580 ISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGL 639

Query: 129 SPN 131
            PN
Sbjct: 640 EPN 642



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 15/163 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSI 63
           H + A++LF  +  RG   D + YN ++ G    ++ ++A+ + E++      +  P+S 
Sbjct: 445 HTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSS 504

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
               L+++ C+ GR DDA  +  KM E+G  A V +Y+ L+ G  + Q    A  V+E M
Sbjct: 505 AVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAM 564

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
                +P I            A +  +A +L   M + G  PD
Sbjct: 565 VSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPD 607



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  +  ++  RG  PD +T++T+I G C     ++A ++ E +    +  +
Sbjct: 88  LCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNS 147

Query: 62  SITFTILIDAFC-KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              F  +I   C K   ++ A+ +   ++ KG    V+ ++ +I+G+ K++++ SA+ + 
Sbjct: 148 DAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLL 207

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M E    PN+            A R  EA QL + M+  G  P+ +  ST+
Sbjct: 208 EVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTV 260



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             D A ++F  +   G  P+I T N +I   CS  ++D+A +L ++++ +   P+  T  
Sbjct: 553 RWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCN 612

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            LI  +CK GR D A  +  +M E G + N  T+  L
Sbjct: 613 TLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 25/150 (16%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+  TY  +I G+ S   LD A+QL E++     + N++  T L+   C  GR+ +A   
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144
           F  M  K    +V+TY+ L+    K                       AG+  EA  +  
Sbjct: 67  FRAM-AKDCAPDVMTYTALVHALCK-----------------------AGKFDEAQGMLR 102

Query: 145 SMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
            M+  G  PD +  STL D  L   GS+E 
Sbjct: 103 EMIARGCAPDTVTFSTLID-GLCKFGSEEQ 131



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L     +D A +L  +++  G  PDI T NT+I GYC   R D A +L E++T   L+PN
Sbjct: 583 LCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 642

Query: 62  SITFTIL 68
             T  +L
Sbjct: 643 DTTHDLL 649


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  +  +F  +   GL P ++++NT++ GY     LD+  +L   +    ++P+  
Sbjct: 148 KEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD+A  +F +ML+KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++SP++             G   +A  L + M   G+ PD +  +TL D
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLID 319



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++ D+GL P+ +T+ T+I G+C   ++D A+++++++    L P+
Sbjct: 216 LCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  + ++M  KG K + +TY+ LIDG  K  ++++AF+  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRK 335

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M E NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 336 RMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 380



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 76/129 (58%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I++  LD   +L   +   G++PD+ TY+ +I G C  +++DEA +LF ++    L PN 
Sbjct: 182 IRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNG 241

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TFT LID  CK G++D A  ++ +ML +    +++TY+ LI G  K  ++K A ++  E
Sbjct: 242 VTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINE 301

Query: 123 MCENNISPN 131
           M    + P+
Sbjct: 302 MSMKGLKPD 310



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+PD ITY T+I G C    L+ A +  +++    ++ +
Sbjct: 286 LCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++ +   + +
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 406 EMQRDGHVPSVV 417



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  +  +F+ +    L+P+
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + ++G +D    + S M   G + +V TYS LI+G  K   M  A +++ 
Sbjct: 171 VVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFX 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + PN              G+   AM++Y  ML   + PD +  +TL
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTL 282



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A +   ++ +  +  D + Y  +I G C   R  +A ++  ++  V LKP+S 
Sbjct: 323 KDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++I+ FCK+G +   + +  +M   G   +VVT
Sbjct: 383 TYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A K+F ++   GL PD ++YNT++ GYC +    EA+ +F ++T   + P+ +
Sbjct: 239 KAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVV 298

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI   CK G ++ A  +  +M E+G + N +T++ LIDG+ K   +  A     EM
Sbjct: 299 TFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREM 358

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  I P++             GR  EA +L   M   G+ PD +  ST+
Sbjct: 359 RQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTI 408



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + + +  L +A + F  +   G+ P++ TYN ++   C      EA+ +   +      P
Sbjct: 131 LALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDP 190

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++T+  L+ AFC+ G +D A  +   M E G K N+VT++ +++G  K+  M+ A  V+
Sbjct: 191 NAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVF 250

Query: 121 EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM +  ++P+              G   EA+ ++  M R GIMPD +  ++L
Sbjct: 251 DEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSL 303



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 97/175 (55%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ++ K  +L+ A+ L  ++ +RGL+ + IT+  +I G+C    LD+A+    ++   +++P
Sbjct: 306 VMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQP 365

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + +  LI+ +C  GRMD+A  +  +M  KG K +VVTYS ++  Y K+ +  SAF + 
Sbjct: 366 SVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLN 425

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++M EN + P+               R  +A  L+ +M+  G+ PD +  ++L D
Sbjct: 426 QQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLID 480



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   AL +   +   G +P+ +TYNT++  +C    +D A +L + +    LKPN +TF 
Sbjct: 172 HRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFN 231

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +++  CK GRM+DA  +F +M+++G   + V+Y+ L+ GY K      A  V+ EM   
Sbjct: 232 SVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRK 291

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P++            AG    A+ L   M   G+  + +  + L D
Sbjct: 292 GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALID 340



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 78/126 (61%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +L  ++  +G++PD++TY+TI+  YC       A QL +++    + P++IT++
Sbjct: 382 RMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYS 441

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+E R+ DA ++F  M+  G + + VTY+ LIDG+ K  N++ A  +++EM + 
Sbjct: 442 SLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKA 501

Query: 127 NISPNI 132
            + P++
Sbjct: 502 GVLPDV 507



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 94/182 (51%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD AL    ++    ++P ++ YN +I GYC + R+DEA +L  ++    +KP+ +
Sbjct: 344 KKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVV 403

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ ++ A+CK G    A  +  +MLE G   + +TYS LI    + + +  A  +++ M
Sbjct: 404 TYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNM 463

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               + P+              G    A+ L+D M++ G++PD +  S L +   +S+ +
Sbjct: 464 ISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSART 523

Query: 172 QE 173
           +E
Sbjct: 524 KE 525



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 16/143 (11%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A +L  Q+ + G+ PD ITY+++I   C   RL +A  LF+ +  + L+P+ +T+T LI
Sbjct: 420 SAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLI 479

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----FDVYEEMCE 125
           D  CKEG ++ A  +  +M++ G   +VVTYS LI+G  KS   K A    F +Y E   
Sbjct: 480 DGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHE--- 536

Query: 126 NNISPNIAGRPTEAMQLYDSMLR 148
                     P  A   YD+++R
Sbjct: 537 ---------EPVPANIKYDALMR 550



 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +E  L  A  LF  +   GL+PD +TY ++I G+C    ++ A+ L +++    + P
Sbjct: 446 VLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLP 505

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+++LI+   K  R  +A  +  K+  + P    + Y  L+    ++  +KS   + 
Sbjct: 506 DVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMR-CCRNAELKSVLALL 564

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  C       + G   EA ++Y S+L      DG + S L
Sbjct: 565 KGFC-------MKGLMNEADKVYQSILDRNWNLDGSVYSVL 598



 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 27/191 (14%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ AL L  ++   G+ PD++TY+ +I G     R  EA +L  KL   +  P +I
Sbjct: 484 KEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANI 543

Query: 64  TF---------------TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            +                 L+  FC +G M++A  ++  +L++    +   YS LI G+ 
Sbjct: 544 KYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHC 603

Query: 109 KSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           +  N+  A   +++M +   +PN              G   EA Q+   +L    + D  
Sbjct: 604 REGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAE 663

Query: 157 LLSTLADYNLQ 167
               L D NL+
Sbjct: 664 ASKALIDLNLK 674



 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 56/124 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K++  + DR    D   Y+ +I G+C    + +A+   +++      PNS +   
Sbjct: 573 MNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTIS 632

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    ++G + +A  +  ++L     A+      LID   K  N+ +  DV   M  + 
Sbjct: 633 LIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDG 692

Query: 128 ISPN 131
           + P+
Sbjct: 693 LLPS 696


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 91/162 (56%), Gaps = 5/162 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A  L+ ++  + + PD+ TYN +I G+C + RL +A+ LF  +    ++ +
Sbjct: 164 LCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEAD 223

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  L+ AFCKEG + +   + + M+++G K +++TY+ L+DGY   + +  A +++ 
Sbjct: 224 EYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFN 283

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +  ++ N+       M L+  M    I+PD +  S+L D
Sbjct: 284 TMVQRGVTANV-----RTMNLFQEMHCKEIIPDTIAYSSLID 320



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 27/172 (15%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA----------------- 46
           KE ++     +   +   G++PDIITYN+++ GYC +  +D+A                 
Sbjct: 236 KEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVR 295

Query: 47  -VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            + LF+++ C ++ P++I ++ LID FCK GR+  A  +  +M ++G   N++TY+ ++ 
Sbjct: 296 TMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILY 355

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
              K  +++    +  ++    I P+             ++L NG+  DG L
Sbjct: 356 ALCKIHHVEKTIALLRKIKVKGIQPDAYTY---------TILTNGLFKDGRL 398



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 53/85 (62%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  AL+L  ++ DRG  P+IITYN+I+   C ++ +++ + L  K+    ++P++ 
Sbjct: 324 KSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAY 383

Query: 64  TFTILIDAFCKEGRMDDATMMFSKM 88
           T+TIL +   K+GR+++A  +F  +
Sbjct: 384 TYTILTNGLFKDGRLEEAREIFPDL 408



 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 33/189 (17%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H +  +  F +LT++   P I  +  I+      NR   A+   +KL    +KP+  T+ 
Sbjct: 43  HHENLISRFNRLTNQIPTPPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYN 102

Query: 67  ILIDAF---------------------CKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +LI+ F                     CK G    A  +  ++ EK  + +VV Y+ +I+
Sbjct: 103 VLINCFSQLGHTHFLDRVSYETLINGLCKVGETRAALRLLKEVNEKIVQYDVVMYTAIIN 162

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           G  K + +  AFD+Y EM    +SP+            + GR  +A+ L++ M    +  
Sbjct: 163 GLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEA 222

Query: 154 DGLLLSTLA 162
           D    +TL 
Sbjct: 223 DEYTFNTLV 231



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 63/113 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            + LF ++  + + PD I Y+++I G+C   R+ +A++L +++      PN IT+  ++ 
Sbjct: 296 TMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILY 355

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           A CK   ++    +  K+  KG + +  TY+ L +G FK   ++ A +++ ++
Sbjct: 356 ALCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREIFPDL 408



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 33/186 (17%)

Query: 11  ALKLFGQLTDRGLEPDIITYN---------------------TIICGYCSLNRLDEAVQL 49
           AL    +L  +G++PD+ TYN                     T+I G C +     A++L
Sbjct: 82  ALSFHQKLHFKGIKPDLFTYNVLINCFSQLGHTHFLDRVSYETLINGLCKVGETRAALRL 141

Query: 50  FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            +++    ++ + + +T +I+  CK+  +DDA  ++++M+ K    +V TY+ +I G+  
Sbjct: 142 LKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCV 201

Query: 110 SQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLL 157
              +K A  ++ +M   N+  +              G   E   +   M++ G+ PD + 
Sbjct: 202 VGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIIT 261

Query: 158 LSTLAD 163
            ++L D
Sbjct: 262 YNSLMD 267


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++AA   F ++   GL PD+ITYN+++ GYC    L EA+ L   L    L P 
Sbjct: 359 LLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPT 418

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID +C+ G +++A  +  +M+E+G   +V TY+ L++G  K +N+  A + ++
Sbjct: 419 VLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFD 478

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P+            I G   +A QL + M+  GI PD +  + + D
Sbjct: 479 EMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIID 532



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L  A  L  ++   GL+PD ITY  +I  +C    L EA +L   +    L+P+
Sbjct: 534 LCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPS 593

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+TILI   C+ G +  A   F KML+ G + N +TY+ LI    ++     A+  + 
Sbjct: 594 VVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFH 653

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM E  ++PN              G   +A++LY  M +NGI PD
Sbjct: 654 EMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPD 698



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD +TYN II G C    L +A  L  K+    L+P+ IT+T LI A C+ G + +
Sbjct: 518 KGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSE 577

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--------- 131
           A  + + M+  G + +VVTY+ LI    +  N+ SA+  + +M +  I PN         
Sbjct: 578 ARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIH 637

Query: 132 ---IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
                GR   A   +  ML  G+ P+    + L D N
Sbjct: 638 ALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGN 674



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A + F ++  +GL+PD   YNT IC    L    +A QL E +    + P+++T+ +
Sbjct: 470 LPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNV 529

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK G + DA  +  KM+  G + + +TY+CLI  + +   +  A  +   M  + 
Sbjct: 530 IIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDG 589

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++             G    A   +  ML  GI P+ +  + L
Sbjct: 590 LQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVL 635



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ + G+ P ++TYN II G     +++ A   F ++  + L P+ IT+  +++ +CK G
Sbjct: 339 EMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAG 398

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
            + +A  +   +   G    V+TY+ LIDGY +   ++ A  + EEM E    P++    
Sbjct: 399 NLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYT 458

Query: 133 --------AGRPTEAMQLYDSMLRNGIMPD 154
                         A + +D ML  G+ PD
Sbjct: 459 ILMNGSHKVRNLPMAREFFDEMLSKGLQPD 488



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 47/197 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  AL L G L   GL P ++TYNT+I GYC L  L+EA +L E++      P+  
Sbjct: 396 KAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVC 455

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--------------------------- 96
           T+TIL++   K   +  A   F +ML KG + +                           
Sbjct: 456 TYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVM 515

Query: 97  --------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
                    VTY+ +IDG  K+ N+K A D+  +M  + + P+              G  
Sbjct: 516 MLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLL 575

Query: 137 TEAMQLYDSMLRNGIMP 153
           +EA +L + M+ +G+ P
Sbjct: 576 SEARKLLNGMVSDGLQP 592



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 5/127 (3%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LI  C    +L +A   F ++ D G+EP+ ITYN +I   C   R   A   F ++   
Sbjct: 599 ILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLER 658

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L PN  T+T+LID  C+EG   DA  ++ +M + G   +  T++ L  G+ K  +M  A
Sbjct: 659 GLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDKG-HMYHA 717

Query: 117 FDVYEEM 123
            +  E +
Sbjct: 718 IEYLENI 724



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 23/169 (13%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L  F  +   G+ PD+   N ++       R D+   ++ ++  ++++P  +T+  L+D+
Sbjct: 193 LAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDS 252

Query: 72  FCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           F KEGR D+A+M+  +M  +G     N VTY+ +I    +  ++++A  + + M  +  +
Sbjct: 253 FLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKA 312

Query: 130 PNIAGRP-------------TEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            +    P              EA+Q+   M   GIMP      TL  YN
Sbjct: 313 SSFTYNPLITALLERGFVQKVEALQM--EMENEGIMP------TLVTYN 353



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 54/216 (25%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-----CVQLKPNSI 63
           D    ++ ++    +EP I+TYNT++  +    R DEA  L +++      C+    N +
Sbjct: 225 DDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLL---NDV 281

Query: 64  TFTILIDAFCKEGRMDDA-----TMMFSK-------------MLEKGPKANV-------- 97
           T+ ++I    +EG +++A     +M  SK             +LE+G    V        
Sbjct: 282 TYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEME 341

Query: 98  --------VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
                   VTY+ +I G  KS+ +++A   + EM    + P++            AG   
Sbjct: 342 NEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLK 401

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           EA+ L   + R G+ P  L  +TL D   +  G +E
Sbjct: 402 EALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEE 437



 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 13/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E HL+ A KL   +     +    TYN +I        + +   L  ++    + P 
Sbjct: 290 LAREGHLENAAKLVDSMR-LSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPT 348

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I    K  +++ A + F++M   G   +++TY+ +++GY K+ N+K A  +  
Sbjct: 349 LVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLG 408

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++    ++P +             G   EA +L + M+  G  PD
Sbjct: 409 DLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPD 453


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++  ++++RG+ PD++TYN++I G C   R++EA QL E +   +++PN
Sbjct: 183 LCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPN 242

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  +CK G    A  +  +M++ G   +VVT++ LI G+ +   +  A +V  
Sbjct: 243 LVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLH 302

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +   +PN+            AGR  EA +L   M   GI+PD +  ++L
Sbjct: 303 LMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSL 354



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++   G  PD++T+N++I G+C  +++D+A ++   +      PN +T+ +LI 
Sbjct: 262 AHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLIS 321

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR ++A  + S+M  +G   +++TY+ LI  + ++  ++ AF +   M E  + P
Sbjct: 322 GLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIP 381

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             + R  EA  L D+M   G +P+    ++L +
Sbjct: 382 DGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLME 426



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 46/220 (20%)

Query: 2   LIKECHLDAALKLF-GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------ 54
           L+K      A ++F  +L  +  + + ITYNT+I G+C    ++ A QL  ++       
Sbjct: 79  LVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSP 138

Query: 55  ---------------------------CVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
                                       V+  P+S+ F IL+   CK  ++ +A  M  +
Sbjct: 139 DVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEE 198

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           M E+G   +VVTY+ LIDG  KS  M+ A  + E M +  + PN+             G 
Sbjct: 199 MSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGC 258

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
              A QL + M+++G  PD +  ++L     Q S   + C
Sbjct: 259 TGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKAC 298



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++  RG+ PDIITYN++I  +C   ++++A Q+   +    + P+ I++  L
Sbjct: 330 NEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             A  K  R D+A  +   M + G   N+ T++ L++G   S+ +  A  +   M     
Sbjct: 390 AVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGC 449

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMP----DGLLLSTLA 162
            P              AGR  +A ++   M+  GI P     G ++ TLA
Sbjct: 450 DPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLA 499



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    D A  L   + D G  P++ T+N+++ G C   RLDEA  L   +  V   P 
Sbjct: 393 LLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPA 452

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ +L+   CK GR+DDA  +   M+ +G +  V +   ++    +      A   ++
Sbjct: 453 ASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFD 512

Query: 122 EM 123
           ++
Sbjct: 513 QV 514



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 14/170 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDI---ITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSI 63
           +D +L  F  +T       I    T N ++       R  +A Q+F ++L       N I
Sbjct: 47  VDVSLFFFRWVTRSHRGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHI 106

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FCK G M+ A  + ++M E+G   +VVT+S ++     + N+  A   + E 
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRES 166

Query: 124 CE---NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E   +++  NI       A + +EA Q+ + M   GI+PD +  ++L D
Sbjct: 167 VECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLID 216



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 58/131 (44%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A ++   + +RG+ PD I+Y T+        R DEA  L + +      PN  TF 
Sbjct: 363 QIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFN 422

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L++  C   R+D+A  + + M   G      TY  L+ G  K+  +  A +V   M   
Sbjct: 423 SLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSE 482

Query: 127 NISPNIAGRPT 137
            I P ++   T
Sbjct: 483 GIQPLVSSSGT 493



 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 45/98 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  L   +   G +P   TY  ++ G C   R+D+A ++   +    ++P   +   
Sbjct: 434 LDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGT 493

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           ++    +EG+ D A   F +++    KA   +Y  L++
Sbjct: 494 IVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLE 531


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +T   L P ++++NT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 148 KEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVY 207

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD+A  M ++ML+ G   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 208 TYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQM 267

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 P++             G   +A  L + M+  G+ PD +  +TL D
Sbjct: 268 LSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLID 319



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A ++  ++ D GL P+ +T+ T+I G+C   ++D A+++++++      P+
Sbjct: 216 LCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   C+ G +  A  +  +M+ KG K + +TY+ LIDG  K  +++  F++ +
Sbjct: 276 LITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRK 335

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M   NI  +              GR  +A ++   ML  G+ PD
Sbjct: 336 RMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPD 380



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G  P +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 111 LMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++  
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLN 230

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +N + PN              G+   AM++Y  ML  G +PD +  +TL
Sbjct: 231 EMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTL 282



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 71/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A  L  ++  +GL+PD ITY T+I G C    L+   +L +++    ++ +
Sbjct: 286 LCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLD 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI   C+EGR  DA  M  +ML  G K +  TY+ +++ + K+ ++K+A  +  
Sbjct: 346 EVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLR 405

Query: 122 EMCENNISPNIA 133
           EM  N   P + 
Sbjct: 406 EMQRNGPVPGVV 417



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+   +L  ++    +  D +TY  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 323 KEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNG 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           T+T++++ FCK G +  A+ +  +M   GP   VVT
Sbjct: 383 TYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  +F Q+ D+G++PD  TYN +I GY S+ +  E V++ E+++   LKP+  T+  
Sbjct: 254 VDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGS 313

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  C  GR  +A  +F  M+ KG K NV  Y  LI GY     +    D+   M EN 
Sbjct: 314 LLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG 373

Query: 128 ISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +SP     NI            EAM +++ M + G+ PD +    L D
Sbjct: 374 LSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALID 421



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 95/166 (57%), Gaps = 15/166 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---PNSITFTILID 70
           L  ++ + G  PD+++YNT++ G+C+  R +EA++L   +   Q +   PN +++ I+I+
Sbjct: 152 LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVIN 211

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F  EG++D A  +F +M+++G + NVVTY+ +IDG  K+Q +  A  V+++M +  + P
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +              G+  E +++ + M  +G+ PD     +L +Y
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 16/186 (8%)

Query: 5   ECHLDAALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           E   + AL+L   + D   R   P++++Y  +I G+ +  ++D+A  LF ++    ++PN
Sbjct: 178 EKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPN 237

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID  CK   +D A  +F +M++KG K +  TY+CLI GY      K    + E
Sbjct: 238 VVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLE 297

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           EM  + + P+              GR  EA  L+DSM+R GI P+  +   L   Y  + 
Sbjct: 298 EMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKG 357

Query: 169 SGSQEH 174
           + S+ H
Sbjct: 358 ALSEMH 363



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 84/154 (54%), Gaps = 12/154 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A + + ++ ++G+ PD++ +NTI+C  C+  ++ +A +L + +  V  +P  I++T L
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTL 524

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C  GR+D+A      ML  G K +  TY+ L+ GY ++  +  A+ V+ EM  N I
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 129 SPNIAG------------RPTEAMQLYDSMLRNG 150
           +P +              R +EA +LY +M+ +G
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 68/122 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +   G  P +I+Y T+I G+C + R+DEA +  + +  V LKP+  T+  L+ 
Sbjct: 502 AQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLH 561

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ GR+DDA  +F +ML  G    VVTYS ++ G F ++    A ++Y  M  +    
Sbjct: 562 GYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQW 621

Query: 131 NI 132
           NI
Sbjct: 622 NI 623



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   + + GL PD   +N I   Y     +DEA+ +F K+    L P+ + +  LIDA C
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALC 424

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K GR+DDA + F++M+ +G   N+  ++ L+ G       + A + Y EM    I P++ 
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  +A +L D M R G  P  +  +TL
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTL 524



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF  +  +G++P++  Y  +I GY +   L E   L   +    L P+   F I+  A+ 
Sbjct: 330 LFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYA 389

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K+  +D+A  +F+KM ++G   +VV Y  LID   K   +  A   + +M    ++PNI 
Sbjct: 390 KKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF 449

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        +  +A + Y  ML  GI PD +  +T+
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTI 489



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK F Q+ + G+ P+I  +N+++ G C++++ ++A + + ++    ++P+ + F  +
Sbjct: 431 DAVLK-FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTI 489

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C +G++  A  +   M   G +  V++Y+ LI G+     +  A    + M    +
Sbjct: 490 LCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGL 549

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P+             AGR  +A  ++  MLRNGI P  +  ST+
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI 594



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL PD++ Y  +I   C L R+D+AV  F ++    + PN  
Sbjct: 390 KKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF 449

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  L+   C   + + A   + +ML +G + +VV ++ ++        +  A  + + M
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLM 509

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 P +             GR  EA +  D ML  G+ PD    +TL
Sbjct: 510 ERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+  +   G + +I  YN I+ G    N +DEA +LF+ L     +    TF I+I 
Sbjct: 607 AKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIG 666

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K GR +DA  +F+ +   G   +V TY  + +   +   ++   D++  M ++  +P
Sbjct: 667 ALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTP 726

Query: 131 N 131
           N
Sbjct: 727 N 727



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYC-------SLNRLDEAVQLFEKLT---CVQ 57
           LD ALKLF  L        +I +N ++           S    +  V LF ++     ++
Sbjct: 30  LDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P+  T++ILI  FC+ GR++     F  +L+ G + N +  + L+ G   ++ +  A 
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 118 DV-YEEMCENNISPNIAGRPT 137
           D+  + M E   +P++    T
Sbjct: 150 DILVKRMPELGCTPDVVSYNT 170



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KLF  L  +  + +I T+N +I       R ++A+ LF  ++   L P+  T+ +
Sbjct: 639 VDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCL 698

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +   +EG +++   +FS M + G   N    + L+       ++  A     ++ E N
Sbjct: 699 IAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKN 758

Query: 128 IS 129
            S
Sbjct: 759 FS 760



 Score = 35.8 bits (81), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 39/103 (37%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A+ LF  ++  GL PD+ TY  I         L+E   LF  +      PN
Sbjct: 668 LFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPN 727

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           S     L+      G +  A     K+ EK       T + LI
Sbjct: 728 SRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLI 770


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   ALK+   +  +   P  +TY  ++   C    L+ A +LF  +     +PN
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPN 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+ +T LI  F K GRM +A  +F +M+E G + +V+T++ +IDG  KS N + A   +E
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFE 389

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      PN+             GR   A ++   M+ +G  PD +    L D
Sbjct: 390 EMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLD 443



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 9/171 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A  LF ++ + G  PD+IT+  +I G C     ++A + FE++     KPN +
Sbjct: 342 KSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVV 401

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +I    K GR+ +A  +   M+  G   + VTY CL+DG+ K   +  A  + +E+
Sbjct: 402 TYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL 461

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
            + + SPN        +QLY S+++ G+   G + +TL D   QS  + E+
Sbjct: 462 DKCSSSPN--------LQLYSSLVK-GLCDGGSVENTLDDLFEQSKAAAEN 503



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL--NRLDEAVQLFEKLTCVQLK 59
           L K   LD A ++F ++   G +PD  TYN +I G C    NR++ A  L   L  V   
Sbjct: 516 LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYL 575

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+++T+T L    CK G +D A  M  +   +G  A+VV Y+ L  G      +  A  +
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 120 YEEMCENNISPN-----------IAGRPTE-AMQLYDSMLRNGIMP 153
           ++EM     +P+           I G+  E A + +D M+  G  P
Sbjct: 636 FQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKP 681



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A  L   L   G  PD +TY  +  G C +  +D AV++ E+ +      + +
Sbjct: 555 RENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV 614

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T L    C +G++D A  +F +M+ +G   +   Y C+I+G  K + ++ A   ++EM
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEM 674

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNG 150
                 P +            AG   EA   ++ ML  G
Sbjct: 675 IGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 14/185 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+K+  + + RG   D++ Y  +  G C   ++D AV LF+++      P+
Sbjct: 588 LCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPD 647

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  +I+   K  +++DA   F +M+ KG K  V TY+ L+     + N+  AF  +E
Sbjct: 648 AAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFE 707

Query: 122 EM-CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            M     +  ++            A +   A++L++ M+  G +P  +  ++L D  L  
Sbjct: 708 GMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFD-GLVR 766

Query: 169 SGSQE 173
           SG  E
Sbjct: 767 SGKTE 771



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  + + A K F ++   G +P+++TY TII G   + R+  A ++ + +      P+
Sbjct: 375 LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF-DVY 120
           S+T+  L+D FCK GR+D+A  +  ++ +     N+  YS L+ G     ++++   D++
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLF 494

Query: 121 EE--MCENNISPNI----------AGRPTEAMQLYDSMLRNGIMPD 154
           E+      N+ P +           GR  EA +++  M+  G  PD
Sbjct: 495 EQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPD 540



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-LTCVQLKP 60
           LIK   L+ A K F ++  +G +P + TY  ++   C    +DEA   FE  L   +L  
Sbjct: 658 LIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVG 717

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + +  LI  FCK  ++D A  +F  M+ +G     VT + L DG  +S   + A ++ 
Sbjct: 718 SVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELL 777

Query: 121 EEMCENNISPNIA 133
           +EM      P+ A
Sbjct: 778 QEMAAGGSPPHAA 790



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 86/178 (48%), Gaps = 17/178 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+ E +      +  ++   G+ P+  ++N +I  +    R D+AV  FE +   + KP
Sbjct: 128 LLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKP 187

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDV 119
           +  TF IL+D  CK G  + A  +F +M+  G    +   ++ ++    K++ +K A +V
Sbjct: 188 DLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREV 247

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
           + +M +    P+             AG   EA+++ D+ML    +P     G+L+++L
Sbjct: 248 FGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSL 305



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G + D+ TYN ++    +     +   + E++    + PN+ +F ILI +F +  R DDA
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---------- 131
              F  M  K  K ++ T+  L+D   K+   + AF+V+ EM      P           
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 132 ---IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
               A R  EA +++  M + G  PD +  +T+ D   ++  +QE
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQE 278



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 14/179 (7%)

Query: 9   DAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + A ++F ++   G + PD   +  ++       R+ EA ++F ++      P++I +  
Sbjct: 206 EKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNT 265

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   K G   +A  +   ML K      VTY  L++   K+  ++ A +++  M  + 
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             PN             +GR  EA  L+D M+  G  PD +  + + D  L  SG+ E 
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID-GLCKSGNFEQ 383



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 14/137 (10%)

Query: 32  TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC--KEGRMDDATMMFSKML 89
           +II G C   RLDEA ++F+++     KP++ T+ ILI+  C  +E R++ A  +   + 
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
             G   + VTY+ L  G  K   +  A  + EE      + ++             G+  
Sbjct: 571 MVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 138 EAMQLYDSMLRNGIMPD 154
            A+ L+  M+R G  PD
Sbjct: 631 RAVSLFQEMVRQGGAPD 647



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 6   CH---LDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           CH   +D A   F  +  RG L   ++ Y+ +I G+C   ++D A++LFE +      P 
Sbjct: 694 CHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPT 753

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T   L D   + G+ + A  +  +M   G   +  T++ ++DG  KS        + +
Sbjct: 754 AVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQ 813

Query: 122 E 122
           E
Sbjct: 814 E 814



 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +DAALKLF  +  RG  P  +T  ++  G     + ++A +L +++      P++ 
Sbjct: 731 KALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAA 790

Query: 64  TFTILIDAFCK 74
           TFT ++D   K
Sbjct: 791 TFTAILDGLRK 801


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L+ ++  + + P+++TY T+I G+C +  L EAV L  ++    + P+  TF+ILID
Sbjct: 228 ACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILID 287

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  KEG+M  A ++ + M++   K +VVTY+ L+DGYF    +K A  V+  M ++ ++P
Sbjct: 288 ALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTP 347

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +                 EA+ L++ M    ++P+ +  ++L D
Sbjct: 348 GVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLID 392



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +   G+ P + +Y  +I G C    +DEA+ LFE++    + PN+ITF  LID  C
Sbjct: 336 VFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLC 395

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K GR+     +  KM ++   A+V+TYS LID   K+ ++  A  ++++M    I P++ 
Sbjct: 396 KSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMY 455

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPD 154
                       GR   A +++  +L  G   D
Sbjct: 456 TYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLD 488



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 71/130 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +     L  ++ DR    D+ITY+++I   C    LD+A+ LF+K+   +++P+
Sbjct: 394 LCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPD 453

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILID  CK GR+  A  +F  +L KG   ++ TY+ +I G+ K+     A  +  
Sbjct: 454 MYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLS 513

Query: 122 EMCENNISPN 131
           +M +N   PN
Sbjct: 514 KMEDNGCIPN 523



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ LF ++  + + P+ IT+N++I G C   R+     L +K+       +
Sbjct: 359 LCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLAD 418

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ LIDA CK   +D A  +F KM+ +  + ++ TY+ LIDG  K   +K A +V++
Sbjct: 419 VITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQ 478

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            +       +I            AG   EA+ L   M  NG +P+ +
Sbjct: 479 HLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAI 525



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 64/122 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K CHLD A+ LF ++  + ++PD+ TY  +I G C   RL  A ++F+ L       +
Sbjct: 429 LCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLD 488

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I  FCK G  D+A  + SKM + G   N +T+  +I   F+      A  +  
Sbjct: 489 IRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLR 548

Query: 122 EM 123
           EM
Sbjct: 549 EM 550



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     +  +   +  RG  PD+IT  T+I G C    + +A++  + +  ++ + + 
Sbjct: 115 CHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDR 174

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I++  LI+  CK G    A  +   + E+  K +VV Y+ +ID   K++ +  A ++Y E
Sbjct: 175 ISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSE 234

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN+    T            EA+ L + M    I PD    S L D
Sbjct: 235 MNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILID 287



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK    +     + D I+Y T+I G C +     A+QL   L    +KP+ + + I+ID
Sbjct: 158 ALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIID 217

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK   + +A  ++S+M  K    NVVTY+ LI G+     +  A  +  EM   NI+P
Sbjct: 218 SLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINP 277

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G+   A  +   M++  + PD +  ++L D
Sbjct: 278 DVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVD 322



 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F  L  +G   DI TY  +I G+C     DEA+ L  K+      PN
Sbjct: 464 LCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPN 523

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +ITF I+I A  ++   D A  +  +M+ +G
Sbjct: 524 AITFDIIICALFEKDENDKAEKLLREMIARG 554



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ LF ++      P    +N I+     + R   A+ L + L    +  + +T  ILI+
Sbjct: 53  AVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILIN 112

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----- 125
            FC  G++  +  + + +L++G   +V+T + LI G      +K A   ++++       
Sbjct: 113 CFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQL 172

Query: 126 NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + IS           G    A+QL  ++    I PD ++ + + D
Sbjct: 173 DRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIID 217


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 98/174 (56%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A  L+ ++  +G+ PD++TY+ ++ G+C + +L+ A+ L  ++    + P+
Sbjct: 208 LCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPD 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TIL+DA CKEG++ +A  + + M++     +VV YS L+DGY     + +A  V+ 
Sbjct: 268 IYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFY 327

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +  ++P++              R  EA+ L++ + +  ++PD +  ++L D
Sbjct: 328 TMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLID 381



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 29/195 (14%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++F  +T  G+ PD+  Y+ +I G C + R+DEA+ LFE++    + P+++T+T 
Sbjct: 319 VNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTS 378

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+     +F +ML++G   +V+TY+ LID   K+ ++  A  ++ +M +  
Sbjct: 379 LIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQA 438

Query: 128 ISPNI------------AGRPTEAMQLYDSMLR--------------NGIMPDGLLLSTL 161
           I PN+             GR   A++ +  +L               NG+  +GLL   L
Sbjct: 439 IRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEAL 498

Query: 162 ADYNLQSSGSQEHCI 176
           A   LQS      CI
Sbjct: 499 A---LQSRMEDNGCI 510



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 67/125 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +     LF ++ DRG  PD+ITYN +I   C    LD A+ LF K+    ++PN
Sbjct: 383 LCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPN 442

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTIL+D  CK GR+ +A   F  +L KG   NV TY+ +I+G  K   +  A  +  
Sbjct: 443 VYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQS 502

Query: 122 EMCEN 126
            M +N
Sbjct: 503 RMEDN 507



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL+   ++  +G     I+Y  +I G C +     A++L  ++    ++PN + 
Sbjct: 141 EGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVI 200

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++++ID  CK+  +D+A  ++++M+ KG   +VVTYS L+ G+     +  A D+  EM 
Sbjct: 201 YSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMV 260

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             NI+P+I             G+  EA  +   M++  +  D ++ STL D
Sbjct: 261 LENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMD 311



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 67/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ LF ++ D+ + P++ T+  ++ G C + RL  A++ F+ L       N
Sbjct: 418 LCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLN 477

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I+  CKEG +D+A  + S+M + G  ++ VT+  +I  +F       A  +  
Sbjct: 478 VRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVR 537

Query: 122 EM 123
           EM
Sbjct: 538 EM 539



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 6   CHLDAALKLFG---QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH    +  F    ++   G +P+ IT NT++ G C   ++ EA++  +K+     + + 
Sbjct: 104 CHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSG 163

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I++ ILI+  CK G    A  +  ++     + NVV YS +ID   K   +  A+D+Y E
Sbjct: 164 ISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTE 223

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+            I G+   A+ L + M+   I PD    + L D
Sbjct: 224 MVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVD 276



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A+ L+ Q+    +EPD  T N II  +C   ++  A     K+  +  +PN+IT   L+
Sbjct: 76  TAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLM 135

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C EG++ +A     K+L +G + + ++Y  LI+G  K    ++A  +   +   +I 
Sbjct: 136 KGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIR 195

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLA 162
           PN+                 EA  LY  M+  GI PD +  S L 
Sbjct: 196 PNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILV 240


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   ALK+   +  +   P  +TY  ++   C    L+ A +LF  +     +PN
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPN 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+ +T LI  F K GRM +A  +F +M+E G + +V+T++ +IDG  KS N + A   +E
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFE 389

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      PN+             GR   A ++   M+ +G  PD +    L D
Sbjct: 390 EMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLD 443



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A  LF ++ + G  PD+IT+  +I G C     ++A + FE++     KPN +
Sbjct: 342 KSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVV 401

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +I    K GR+ +A  +   M+  G   + VTY CL+DG+ K   +  A  + +E+
Sbjct: 402 TYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL 461

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            + + SPN        +QLY S++ NG+   G +  TL D   QS  + E
Sbjct: 462 DKCSSSPN--------LQLYSSLV-NGLCDGGSVEKTLDDLFEQSKAAAE 502



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A  L   L   G  PD +TY  +  G C +  +D AV++ E+ +      + +
Sbjct: 555 RENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV 614

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T L    C +G++D A  +F +M+ +G   +   Y C+I+G  K + ++ A   ++EM
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEM 674

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNG 150
                 P +            AG   EA   ++SML  G
Sbjct: 675 IGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARG 713



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 14/166 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL--NRLDEAVQLFEKLTCVQLK 59
           L K   LD A ++F ++   G +PD  TYN +I G C    NR++ A  L   L  V   
Sbjct: 516 LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYL 575

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+++T+T L    CK G +D A  M  +   +G  A+VV Y+ L  G      +  A  +
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 120 YEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMP 153
           ++EM     +P+ A             +  +A + +D M+  G  P
Sbjct: 636 FQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKP 681



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 14/185 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+K+  + + RG   D++ Y  +  G C   ++D AV LF+++      P+
Sbjct: 588 LCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPD 647

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  +I+   K  +++DA   F +M+ KG K  V TY+ L+     + N+  AF  +E
Sbjct: 648 AAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFE 707

Query: 122 EM-CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            M     +  ++            A +   A++L++ M+  G +P  +  ++L D  L  
Sbjct: 708 SMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFD-GLVR 766

Query: 169 SGSQE 173
           SG  E
Sbjct: 767 SGKTE 771



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  + + A K F ++   G +P+++TY TII G   + R+  A ++ + +      P+
Sbjct: 375 LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF-DVY 120
           S+T+  L+D FCK GR+D+A  +  ++ +     N+  YS L++G     +++    D++
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLF 494

Query: 121 EE--MCENNISPNI----------AGRPTEAMQLYDSMLRNGIMPDG 155
           E+       + P +           GR  EA +++  M+  G  PD 
Sbjct: 495 EQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDA 541



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-LTCVQLKP 60
           LIK   L+ A K F ++  +G +P + TY  ++   C    +DEA   FE  L   +L  
Sbjct: 658 LIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVG 717

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + +  LI  FCK  ++D A  +F  M+ +G     VT + L DG  +S   + A ++ 
Sbjct: 718 SVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELL 777

Query: 121 EEMCENNISPNIA 133
           +EM      P+ A
Sbjct: 778 QEMAAGGSPPHAA 790



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 86/178 (48%), Gaps = 17/178 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+ E +      +  ++   G+ P+  ++N +I  +    R D+AV  FE +   + KP
Sbjct: 128 LLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKP 187

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDV 119
           +  TF IL+D  CK G  + A  +F +M+  G    +   ++ ++    K++ +K A +V
Sbjct: 188 DLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREV 247

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
           + +M +    P+             AG   EA+++ D+ML    +P     G+L+++L
Sbjct: 248 FGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSL 305



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G + D+ TYN ++    +     +   + E++    + PN+ +F ILI +F +  R DDA
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---------- 131
              F  M  K  K ++ T+  L+D   K+   + AF+V+ EM      P           
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233

Query: 132 ---IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
               A R  EA +++  M + G  PD +  +T+ D   ++  +QE
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQE 278



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 14/179 (7%)

Query: 9   DAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + A ++F ++   G + PD   +  ++       R+ EA ++F ++      P++I +  
Sbjct: 206 EKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNT 265

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   K G   +A  +   ML K      VTY  L++   K+  ++ A +++  M  + 
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             PN             +GR  EA  L+D M+  G  PD +  + + D  L  SG+ E 
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID-GLCKSGNFEQ 383



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 32  TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC--KEGRMDDATMMFSKML 89
           +II G C   RLDEA ++F+++     KP++ T+ ILI+  C  +E R++ A  +   + 
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
           + G   + VTY+ L  G  K   +  A  + EE      + ++             G+  
Sbjct: 571 KVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 138 EAMQLYDSMLRNGIMPDG 155
            A+ L+  M+R G  PD 
Sbjct: 631 RAVSLFQEMVRQGGAPDA 648



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 6   CH---LDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           CH   +D A   F  +  RG L   ++ Y+ +I G+C   ++D A++LFE +      P 
Sbjct: 694 CHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPT 753

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T   L D   + G+ + A  +  +M   G   +  T++ ++DG  KS        + +
Sbjct: 754 AVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQ 813

Query: 122 E 122
           E
Sbjct: 814 E 814



 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +DAALKLF  +  RG  P  +T  ++  G     + ++A +L +++      P++ 
Sbjct: 731 KALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAA 790

Query: 64  TFTILIDAFCK 74
           TFT ++D   K
Sbjct: 791 TFTAILDGLRK 801


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F ++ + G EP+++ YNTII G C   ++D A+ L  ++    ++P+++T+  LI 
Sbjct: 170 ALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLIS 229

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR DDAT M S M ++    +V T++ LID   K   +  A ++YEEM   ++ P
Sbjct: 230 GLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDP 289

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I              R  EA Q++  M+  G  PD +  S L +
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILIN 334



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 79/130 (60%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE  +  A +L+ ++  R L+PDI+TY+ +I G C  +RLDEA Q+F  +      P+ 
Sbjct: 267 VKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDV 326

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T++ILI+ +CK  +++    +F +M ++G   N VTY+ LI GY ++  +  A ++++ 
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKW 386

Query: 123 MCENNISPNI 132
           M    + PNI
Sbjct: 387 MVFCGVPPNI 396



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  AL   G++   G EPDI+T+ +++ G+C  +R+ +A+ +F+++  +  +PN + + 
Sbjct: 131 QLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYN 190

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID  CK  ++D+A  + ++M   G + + VTY+ LI G   S     A  +   M + 
Sbjct: 191 TIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKR 250

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I P++             GR +EA +LY+ M+R  + PD +  S L
Sbjct: 251 EIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLL 297



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  +KLF +++ RG+  + +TY  +I GYC   +L+ A ++F+ +    + PN I
Sbjct: 338 KSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNII 397

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+   C  G+++ A ++ + M + G  A++VTY+ +I G  K+  +  A+D+Y  +
Sbjct: 398 TYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSL 457

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
               ++P+I             G   EA  L+  M  +GI+P+
Sbjct: 458 NLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             D A ++   +T R + PD+ T+N +I       R+ EA +L+E++    L P+ +T++
Sbjct: 236 RWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYS 295

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   C   R+D+A  MF  M+ KG   +VVTYS LI+GY KS+ ++    ++ EM + 
Sbjct: 296 LLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR 355

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
            +  N             AG+   A +++  M+  G+ P+     +LL  L D
Sbjct: 356 GVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCD 408



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 88/160 (55%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A ++FG +  +G  PD++TY+ +I GYC   +++  ++LF +++   +  N++T+T
Sbjct: 306 RLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI  +C+ G+++ A  +F  M+  G   N++TY+ L+ G   +  ++ A  +  +M ++
Sbjct: 366 VLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKS 425

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  +I            AG   +A  LY S+   G+ PD
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPD 465



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + L+ Q+   G+  ++ T N ++  +C  ++L  A+    K+  +  +P+ +TF  L
Sbjct: 98  DVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSL 157

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++ FC+  R+ DA  MF +M+E G + NVV Y+ +IDG  KS+ + +A D+   M  + I
Sbjct: 158 LNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGI 217

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            P+             +GR  +A ++   M +  I PD    + L D
Sbjct: 218 RPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALID 264



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+   LD +L LF  +      P I  ++ ++     + + D  + L+E++  + +  N 
Sbjct: 57  IRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNL 116

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  IL++ FC+  ++  A     KM++ G + ++VT+  L++G+ +   +  A  +++ 
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDR 176

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           M E    PN+    T             A+ L + M  +GI PD +  ++L
Sbjct: 177 MVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSL 227


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 93/169 (55%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFT 66
           +D A +LF ++   G  PD+ITYNT+I G+C +N +D    L ++L     L P+ +T+T
Sbjct: 253 VDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYT 312

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  +CK G+M+ A+++F+ M+  G K N  T++ LI+G+ K  +M SA ++YEEM   
Sbjct: 313 SIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLL 372

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+I             G+   +++L+  +    + P+    + L +
Sbjct: 373 GCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTN 421



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A  ++ ++   G  PDIIT+ ++I G+C   +++ +++L+ +L    L PN  TF IL 
Sbjct: 361 SAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILT 420

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           +A CKE R+ +A      +  +   A    Y+ +IDG+ K+ N+  A  +  EM E    
Sbjct: 421 NALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCK 480

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           P+            + GR +EA+ +++ ML  G  PD + +++L
Sbjct: 481 PDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSL 524



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 13/155 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+E  ++ YN ++      N++DEAV  F +   +    +S +F ILI   C+ G++D A
Sbjct: 197 GVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKA 256

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE-MCENNISPNIA------- 133
             +F++M   G   +V+TY+ LI+G+ +   +    D+ +E + +N++SP++        
Sbjct: 257 FELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIIS 316

Query: 134 -----GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                G+  +A  L+++M+ +GI P+    + L +
Sbjct: 317 GYCKLGKMEKASILFNNMISSGIKPNAFTFNILIN 351



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A      L  R +      YN +I G+C    +DEA  +  ++   + KP+
Sbjct: 423 LCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPD 482

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+TILI   C +GR+ +A  +F++ML  G   + +T + LI    K+     A+ + +
Sbjct: 483 KITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRIMQ 542

Query: 122 EMCEN 126
              E+
Sbjct: 543 IASED 547


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  L  A +  G +   G++P+++TYNTII G+C   +   A  +F+ +    L+P
Sbjct: 225 VLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEP 284

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  T+   I   CKEGR+++A+ +  KMLE G   N VTY+ LIDGY    ++  A+   
Sbjct: 285 DCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYR 344

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           +EM    I  ++             GR  +A  +   M   G+MPD +
Sbjct: 345 DEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAV 392



 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +  A  LF ++   GL PDII +N +I G+C+   +D A QL +++  +++ P
Sbjct: 435 VLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLP 494

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + IT+  L+  +C+EG++++A  +  +M  +G K + ++Y+ LI GY K  +MK AF V 
Sbjct: 495 DEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVR 554

Query: 121 EEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
           +EM      P I                  A +L   M+  GI PD
Sbjct: 555 DEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPD 600



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ A  L  ++ + GL P+ +TYN +I GYC+   LD+A    +++    +  +
Sbjct: 296 LCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMAS 355

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ + I A   EGRM DA  M  +M EKG   + VT++ LI+GY +  + K AF + +
Sbjct: 356 LVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLD 415

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    I P +              R  EA  L+  + + G++PD ++ + L D
Sbjct: 416 EMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALID 469



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A  +  ++ ++G+ PD +T+N +I GYC       A  L +++    ++P 
Sbjct: 366 LFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPT 425

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI    K  RM +A  +FSK+ ++G   +++ ++ LIDG+  + N+  AF + +
Sbjct: 426 LVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLK 485

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P+              G+  EA QL D M R GI PD +  +TL
Sbjct: 486 EMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTL 537



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL+ F  + ++G  P+I T N ++  +  LNR   A  L+ ++  + ++ +  TF I+
Sbjct: 163 NEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIM 222

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CKEG++  A      M   G K NVVTY+ +I G+      + A  +++ M +  +
Sbjct: 223 INVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGL 282

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            P+              GR  EA  L   ML  G++P+ +  + L D
Sbjct: 283 EPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALID 329



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 54/103 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A +L  ++  RG++PD I+YNT+I GY     + +A ++ +++      P  +
Sbjct: 508 REGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTIL 567

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+  LI   CK    + A  +  +M+ KG   +  TY  +I+ 
Sbjct: 568 TYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEA 610


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 95/167 (56%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+   G  PD+ITY T+I G+C    +DEAV L + +T    KPN+I++TI
Sbjct: 383 VDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 442

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C   R  DA  + S+M+++G   N +T++ LI+   K   ++ A ++ ++M  N 
Sbjct: 443 VLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG 502

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG+  EA++L + M+  G+ P+ ++ S++A
Sbjct: 503 CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 549



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE HL  A ++  ++   GL+P+++ YNT++ G CS  R +E  +L  ++       + +
Sbjct: 309 KEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDV 368

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FC+ G +D    +  +ML  G   +V+TY+ +I+G+ K   +  A  + + M
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN             A R  +A  L   M++ G   + +  +TL ++
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINF 481



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL L   L   G EPD+++YN ++ G C   R     +L E++  +   PN +TF  
Sbjct: 208 VDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G  +    + ++M E G   ++  Y+ +IDG  K  ++K A ++   M    
Sbjct: 268 LISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYG 327

Query: 128 ISPNI 132
           + PN+
Sbjct: 328 LKPNV 332



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + DEA++L   +    + PN
Sbjct: 482 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  +EGR++    MF  + +   +++ V Y+ +I    K    + A +   
Sbjct: 542 TIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLA 601

Query: 122 EMCENNISPN 131
            M  +   PN
Sbjct: 602 YMVSSGCVPN 611



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 60/116 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL+L   + ++G+ P+ I Y++I        R+++ +Q+F+ +    ++ +++ +  +
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 583

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           I + CK G  + A    + M+  G   N  TY+ LI G      +K A ++  E+C
Sbjct: 584 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELC 639



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YN ++ GYC   +L+ A +L      V + PN+ T+  ++ A C  GR+ DA  +  +M 
Sbjct: 93  YNAMVAGYCRAGQLESARRL---AAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +G       Y  +++   +    +SA  V E++
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDL 183



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++  +++F  + D  +  D + YN +I   C     + A++    +      PN
Sbjct: 552 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+TILI     EG + +A  M +++  KG
Sbjct: 612 ESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/123 (20%), Positives = 56/123 (45%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A+++   L  RG   D+   N ++   C    +D+A+ L   L     +P+ +++  ++
Sbjct: 175 SAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVL 234

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C   R      +  +M+      N+VT++ LI    ++   +   +V  +M E+  +
Sbjct: 235 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCT 294

Query: 130 PNI 132
           P+I
Sbjct: 295 PDI 297


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  +F Q+ D+G++PD  TYN +I GY S+ +  E V++ E+++   LKP+  T+  
Sbjct: 254 VDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGS 313

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  C  GR  +A   F  M+ KG K NV  Y  LI GY     +    D+   M EN 
Sbjct: 314 LLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG 373

Query: 128 ISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +SP     NI            EAM +++ M + G+ PD +    L D
Sbjct: 374 LSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALID 421



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 16/186 (8%)

Query: 5   ECHLDAALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           E   + AL+L   + D   R   P++++Y T+I G+ +  ++D+A  LF ++    ++PN
Sbjct: 178 EKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPN 237

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID  CK   +D A  +F +M++KG K +  TY+CLI GY      K    + E
Sbjct: 238 VVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLE 297

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
           EM  + + P+              GR  EA   +DSM+R GI P+  +   L   Y  + 
Sbjct: 298 EMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKG 357

Query: 169 SGSQEH 174
           + S+ H
Sbjct: 358 ALSEMH 363



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 94/166 (56%), Gaps = 15/166 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---PNSITFTILID 70
           L  ++ + G  PD+++YNT++ G+C+  R +EA++L   +   Q +   PN +++  +I+
Sbjct: 152 LIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVIN 211

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F  EG++D A  +F +M+++G + NVVTY+ +IDG  K+Q +  A  V+++M +  + P
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +              G+  E +++ + M  +G+ PD     +L +Y
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 69/122 (56%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +   G  PD+I+Y T+I G+C + R+DEA +  + +  V LKP+  T+  L+ 
Sbjct: 502 AQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLH 561

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ GR+DDA  +F +ML  G    VVTYS ++ G F ++    A ++Y  M  +    
Sbjct: 562 GYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQW 621

Query: 131 NI 132
           NI
Sbjct: 622 NI 623



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   + + GL PD   +N I   Y     +DEA+ +F K+    L P+ + F  LIDA C
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALC 424

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K GR+DDA + F++M+ +G   N+  ++ L+ G       + A + Y EM    I P++ 
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  +A +L D M R G  PD +  +TL
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTL 524



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 85/154 (55%), Gaps = 12/154 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A + + ++ ++G+ PD++ +NTI+C  C+  ++ +A +L + +  V  +P+ I++T L
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTL 524

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C  GR+D+A      ML  G K +  TY+ L+ GY ++  +  A+ V+ EM  N I
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 129 SPNIAG------------RPTEAMQLYDSMLRNG 150
           +P +              R +EA +LY +M+ +G
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            F  +  +G++P++  Y  +I GY +   L E   L   +    L P+   F I+  A+ 
Sbjct: 330 FFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYA 389

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K+  +D+A  +F+KM ++G   +VV +  LID   K   +  A   + +M    ++PNI 
Sbjct: 390 KKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF 449

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        +  +A + Y  ML  GI PD +  +T+
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTI 489



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK F Q+ + G+ P+I  +N+++ G C++++ ++A + + ++    ++P+ + F  +
Sbjct: 431 DAVLK-FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTI 489

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C +G++  A  +   M   G + +V++Y+ LI G+     +  A    + M    +
Sbjct: 490 LCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGL 549

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P+             AGR  +A  ++  MLRNGI P  +  ST+
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI 594



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL PD++ +  +I   C L R+D+AV  F ++    + PN  
Sbjct: 390 KKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF 449

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  L+   C   + + A   + +ML +G + +VV ++ ++        +  A  + + M
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLM 509

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 P++             GR  EA +  D ML  G+ PD    +TL
Sbjct: 510 ERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+  +   G + +I  YN I+ G    N +DEA +LF+ L     +    TF I+I 
Sbjct: 607 AKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIG 666

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K GR +DA  +F+ +   G   +V TY  + +   +   ++   D++  M ++  +P
Sbjct: 667 ALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTP 726

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           N   R   A+ +   + R  I   G  LS L + N     S
Sbjct: 727 N--SRMLNAL-VRRLLHRGDITRAGAYLSKLDEKNFSLEAS 764



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYC-------SLNRLDEAVQLFEKLT---CVQ 57
           LD ALKLF  L        II +N ++           S    +  V LF ++     ++
Sbjct: 30  LDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P+  T++ILI  FC+ GR++     F  +L+ G + N +  + L+ G   ++ ++ A 
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 118 DVY-EEMCENNISPNIAGRPT 137
           D+  + M E   +P++    T
Sbjct: 150 DILIKRMPELGCTPDVVSYNT 170



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KLF  L  +  + +I T+N +I       R ++A+ LF  ++   L P+  T+ +
Sbjct: 639 VDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCL 698

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +   +EG +++   +FS M + G   N    + L+       ++  A     ++ E N
Sbjct: 699 IAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKN 758

Query: 128 IS 129
            S
Sbjct: 759 FS 760



 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 40/103 (38%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A+ LF  ++  GL PD+ TY  I         L+E   LF  +      PN
Sbjct: 668 LFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPN 727

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           S     L+      G +  A    SK+ EK       T + LI
Sbjct: 728 SRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLI 770


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 90/159 (56%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H++ A  L+ ++  +G+ P+++TY+ +I G+ ++ +L +AV LF K+    +KP+  
Sbjct: 239 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVY 298

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FCK G++  A  +  +M ++G   N+VTYS ++D   K+  +  A  +  ++
Sbjct: 299 TFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKL 358

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNG 150
            +  I PN+            +G+  +A  +++ +L  G
Sbjct: 359 KDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKG 397



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  AL    +L   G + + I+Y T+I G C +     A+ L  ++    ++PN + ++
Sbjct: 172 QIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYS 231

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID  CK+  ++DA  ++S+M+ KG   NVVTYS LI G+F    +K A D++ +M   
Sbjct: 232 TIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISE 291

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI P++            +G+ + A++L D M   G  P+ +  S++ D
Sbjct: 292 NIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILD 340



 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F ++   G  P+ IT+ T+I G C   ++ +A+   +KL  +  + N I++  LID
Sbjct: 141 AFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLID 200

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G    A  +  ++  K  + NVV YS +IDG  K +++  AFD+Y EM    ISP
Sbjct: 201 GLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISP 260

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  +A+ L++ M+   I PD    + L D
Sbjct: 261 NVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVD 305



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  ALKL  ++ DRG  P+I+TY++I+   C  +R+D+AV L  KL    ++PN  
Sbjct: 309 KSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMH 368

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILID  C  G+++DA  +F  +L KG    VVTY  +  G+ K      A  +  +M
Sbjct: 369 TYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKM 428

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNG 150
            EN   P+   +  E ++L  S+ + G
Sbjct: 429 EENGCIPD--AKTYELIKL--SLFKKG 451



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 13/176 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL L  ++  + ++P+++ Y+TII G C    +++A  L+ ++    + PN +T++ LI
Sbjct: 210 AALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALI 269

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             F   G++ DA  +F+KM+ +  K +V T++ L+D + KS  +  A  + +EM +    
Sbjct: 270 SGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQP 329

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           PNI              R  +A+ L   +   GI P+    + L D  L +SG  E
Sbjct: 330 PNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILID-GLCTSGKLE 384



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF  L  +   P  I +N I+            + L +K+    +KPN +   I
Sbjct: 68  VDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNI 127

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           LI+ FC+ G +  A  +F+K+L+ G   N +T++ LI G      +  A + ++++    
Sbjct: 128 LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALG 187

Query: 126 ---NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              N IS           G    A+ L   +    + P+ ++ ST+ D
Sbjct: 188 FQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIID 235



 Score = 42.7 bits (99), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           ++I Y++    + S N +D+AV LF  L      P +I F  ++ +  K         + 
Sbjct: 51  NLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLS 110

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IA 133
            KM  +G K N+V  + LI+ + +   +  AF V+ ++ +   +PN            + 
Sbjct: 111 KKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLK 170

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           G+  +A+  +D ++  G   + +   TL D
Sbjct: 171 GQIHQALNFHDKLVALGFQFNQISYGTLID 200


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 94/167 (56%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  +++  Q+ + G  PD+ITY T+I G+C    +DEAV L   +     +PN++++TI
Sbjct: 373 VDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTI 432

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C   R  DA  + S+M+++G   N VT++ LI+   K   ++ A ++ ++M  N 
Sbjct: 433 VLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNG 492

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            SP++            AG   EA++L + M++ G+ P+ ++ S++A
Sbjct: 493 CSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIA 539



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  +  ++   GL P+++ YNT++ G CS +R +EA  L  ++       + +
Sbjct: 299 KEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDV 358

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D  C+ G +D    +  +MLE G   +V+TY+ +I+G+ K   +  A  +   M
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN             A R  +A +L   M++ G  P+ +  +TL ++
Sbjct: 419 AACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINF 471



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A+ L   +   G  P+ ++Y  ++ G CS  R  +A +L  ++      PN +
Sbjct: 404 KEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPV 463

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI+  CK+G ++ A  +  +ML  G   ++++YS +IDG  K+ N   A ++   M
Sbjct: 464 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVM 523

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +SPN              GR  + +Q+++++    +  D +L + +
Sbjct: 524 VKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAV 573



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 13/174 (7%)

Query: 8   LDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +D A++L   L    G EPD+++YN ++ G C   R      L E++      PN +TF+
Sbjct: 197 VDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFS 256

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+ G  +    + ++M E G   +V  Y+ +IDG  K + ++ A  +   M   
Sbjct: 257 TLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSY 316

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            +SPN+            A R  EA  L   M       D +  + L D+  Q+
Sbjct: 317 GLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQN 370



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 62/123 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  + D AL+L   +  +G+ P+ I Y++I        R+++ +Q+FE +    ++ +
Sbjct: 507 LGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSD 566

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  +I + CK G  D A    + M+  G   N  TY+ LI G      +K A ++  
Sbjct: 567 AVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILT 626

Query: 122 EMC 124
           E+C
Sbjct: 627 ELC 629



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 63/130 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G       DEA++L   +    + PN
Sbjct: 472 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPN 531

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A   EGR++    MF  + +   +++ V Y+ +I    K      A +   
Sbjct: 532 TIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLA 591

Query: 122 EMCENNISPN 131
            M  +   PN
Sbjct: 592 YMVSSGCVPN 601



 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  ++  +++F  + D  +  D + YN +I   C     D A++    +      PN  T
Sbjct: 545 EGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNEST 604

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +TILI     EG + +A  + +++  KG
Sbjct: 605 YTILIRGLASEGFVKEAQEILTELCSKG 632



 Score = 40.8 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YN ++ GYC   R  +          V + PN+ T+  L+ A C  GR+ DA  +   M 
Sbjct: 82  YNAMVAGYC---RAGQLAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +G       Y   ++   ++   + A  V  ++
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDL 172


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +   GL P +++YNT++ GY  L  L+E  +L   +    ++P+  
Sbjct: 152 KDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVY 211

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 212 TYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 271

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L D M   G+  D +  +TL D
Sbjct: 272 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLID 323



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 220 LCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 279

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A  +  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 280 LITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRK 339

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 340 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD 384



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +GL+ D ITY T+I G C    LD A +  +++    ++ +
Sbjct: 290 LCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD 349

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++     + +
Sbjct: 350 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLK 409

Query: 122 EMCENNISPNIA 133
           +M  N  +P++ 
Sbjct: 410 DMQRNGHAPSVV 421



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +N ++  +C    +  A  +F+ +    L+P+ +++  L++ + + G +++   + S ML
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
             G + +V TYS LI+G  K   M  A ++++EM    + PN              GR  
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTL 161
            AM++Y  ML   ++PD +  +TL
Sbjct: 263 LAMEIYKQMLSQSLLPDLITYNTL 286



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LDAA +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP++ 
Sbjct: 327 KEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTX 386

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +   M   G   +VVTY+ L++G
Sbjct: 387 TYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A +LF ++ +RG+ PD  T  T+I GYC    + +A+ LFE +T   LKP+ +T+  
Sbjct: 450 LDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNT 509

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCK G M+ A  ++  M+ +    + +++S LI+G+     +  AF +++EM E  
Sbjct: 510 LMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKG 569

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I P +            AG  ++A    ++M+  G+ PD +  +TL +
Sbjct: 570 IKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLIN 617



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 18/183 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++  AL LF  +T R L+PD++TYNT++ G+C +  +++A +L+  +   ++ P+ I
Sbjct: 481 KDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYI 540

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +F+ILI+ FC  G + +A  ++ +M EKG K  +VT + +I GY ++ N+  A D    M
Sbjct: 541 SFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTM 600

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               + P+     T             A  L ++M   G++P+      L  YN    G 
Sbjct: 601 ISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPN------LVTYNAILGGF 654

Query: 172 QEH 174
             H
Sbjct: 655 SRH 657



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  ALK+  ++ +RG   D++TYNT++ G C    LD+A +LF+++    + P+  T T 
Sbjct: 415 VSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTT 474

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +CK+G M  A  +F  M  +  K +VVTY+ L+DG+ K   M+ A +++ +M    
Sbjct: 475 LIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISRE 534

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           I P+              G  +EA +L+D M   GI P
Sbjct: 535 IFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKP 572



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 100/178 (56%), Gaps = 15/178 (8%)

Query: 1   MLIKECHLD---AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           ML++ C  +    A ++F ++  RG+ PD+I++++I+  +     L  A+  FEK+  V 
Sbjct: 335 MLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVG 394

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P+++ +TILI+ +C+   +  A  M ++M+E+G   +VVTY+ L++G  + + +  A 
Sbjct: 395 LVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDAD 454

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++++EM E  + P+              G  T+A+ L+++M    + PD +  +TL D
Sbjct: 455 ELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMD 512



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 67/129 (51%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++  +L  A      +   G+ PD ITYNT+I  +      D A  L   +    L PN 
Sbjct: 585 LRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNL 644

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  ++  F + GRM +A M+  KM++KG   +  TY+ LI+GY    NMK AF V++E
Sbjct: 645 VTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDE 704

Query: 123 MCENNISPN 131
           M +    P+
Sbjct: 705 MLQRGFVPD 713



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+ ++ ++G++P ++T NTII GY     L +A      +    + P+ IT+  LI+
Sbjct: 558 AFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLIN 617

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +F KE   D A  + + M E+G   N+VTY+ ++ G+ +   M+ A  V  +M +  I+P
Sbjct: 618 SFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINP 677

Query: 131 N-------IAGRPT-----EAMQLYDSMLRNGIMPD 154
           +       I G  +     EA +++D ML+ G +PD
Sbjct: 678 DKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD       ++ ++G+  D++TYNT++  YC    + EA  L + +    LKP 
Sbjct: 234 LCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPG 293

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI+  CKEG  + A  +  +ML  G   N  T++ ++    + +++  A  V+ 
Sbjct: 294 LFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFN 353

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  + P++             G    A+  ++ M   G++PD ++ + L +
Sbjct: 354 EMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILIN 407



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   + A ++  ++   GL P+  T+N ++   C    + EA ++F ++    + P+
Sbjct: 304 LCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPD 363

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I+F+ ++  F + G +  A   F KM   G   + V Y+ LI+GY ++ ++  A  +  
Sbjct: 364 LISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRN 423

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E     ++    T            +A +L+  M+  G+ PD   L+TL
Sbjct: 424 EMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTL 475



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K   +D A K++      G   ++ T N ++   C   +LD       ++    +  +
Sbjct: 199 IVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYAD 258

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L++A+C+ G + +A  +   M  KG K  + TY+ LI+G  K  + + A  V +
Sbjct: 259 LVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLD 318

Query: 122 EMCENNISPNIAG-RP-----------TEAMQLYDSMLRNGIMPDGLLLSTLA 162
           EM    + PN A   P            EA ++++ ML+ G++PD +  S++ 
Sbjct: 319 EMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIV 371


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  L+ ++  +G+ P++ TY T+I G+C +  L EA  L  ++    + P+  TF I
Sbjct: 217 LGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNI 276

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA  KEG++D+A  +F +M  K    N+VTY+ LIDG  K+ +++ A  + ++M E  
Sbjct: 277 LIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQG 336

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I PN+             GR   A Q +  +L  G
Sbjct: 337 IQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKG 371



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A+ LF ++  + + P+I+TY ++I G C  + L+ A+ L +K+    ++PN
Sbjct: 281 LAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPN 340

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++TIL+DA CK GR+++A   F  +L KG   NV TY+ +I+G  K+       D+  
Sbjct: 341 VYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKS 400

Query: 122 EMCENNISPN 131
           +M      PN
Sbjct: 401 KMEGKGCMPN 410



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL    ++  +G + D ++Y T+I G C         +L  KL    +KP+ + +T 
Sbjct: 147 IKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTT 206

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CK   + DA  ++S+M+ KG   NV TY+ LI G+    N+K AF +  EM   N
Sbjct: 207 IIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKN 266

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+P++             G+  EAM L++ M    + P+ +  ++L D
Sbjct: 267 INPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLID 314



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A  L  ++  + + PD+ T+N +I       ++DEA+ LFE++    + PN +T+T
Sbjct: 251 NLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYT 310

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK   ++ A  +  KM E+G + NV +Y+ L+D   K   +++A   ++ +   
Sbjct: 311 SLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVK 370

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               N+            AG   + M L   M   G MP+ +   T+
Sbjct: 371 GYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTI 417



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K       + LF Q    G+ PD+ T + +I  +C L  +  A  +F  +      PN
Sbjct: 71  LVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFANILKRGYHPN 130

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT   LI   C  G +  A     K++ +G + + V+Y  LI+G  K+   K+   +  
Sbjct: 131 AITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLR 190

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           ++  +++ P++    T            +A  LY  M+  GI P+    +TL
Sbjct: 191 KLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTL 242



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+ L  ++ ++G++P++ +Y  ++   C   RL+ A Q F+ L       N
Sbjct: 316 LCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLN 375

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
             T+ ++I+  CK G   D   + SKM  KG   N +T+  +I
Sbjct: 376 VRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTII 418



 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 46/99 (46%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P    +N I+       R    + LF++     + P+  T +ILI+ FC    +  A  +
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           F+ +L++G   N +T + LI G      +K A   ++++
Sbjct: 119 FANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKV 157



 Score = 42.4 bits (98), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A + F  L  +G   ++ TYN +I G C      + + L  K+      PN
Sbjct: 351 LCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPN 410

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +ITF  +I A  ++   D A     +M+ +G
Sbjct: 411 AITFKTIICALLEKDENDKAEKFLREMIARG 441


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++AA  L   L  +GL PD+ T+NT+I G C     D A+++FE++     KP+
Sbjct: 343 LCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPD 402

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ILID+ C E R+ +A M+  +M   G   N V Y+ LIDG  KS+ ++ A ++++
Sbjct: 403 EFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFD 462

Query: 122 EM-----CENNISPN--IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M       ++++ N  I G     R  EA QL D M+  G+ PD    ++L  Y
Sbjct: 463 QMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTY 517



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ AL +   + ++G +PD+ TYN++I G C L   ++A+++ +++   +  PN++T+ 
Sbjct: 278 NVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYN 337

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI A CKE  ++ AT +   ++ KG   +V T++ LI G   S+N   A +++EEM   
Sbjct: 338 TLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNK 397

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+               R  EA+ L   M  +G   + ++ +TL D
Sbjct: 398 GCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLID 446



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L  AL L  ++   G   + + YNT+I G C   R+++A ++F+++  + +  +S+T
Sbjct: 416 ERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVT 475

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LID  CK  R+++A+ +  +M+ +G K +  TY+ L+  + +  +++ A D+ + M 
Sbjct: 476 YNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMA 535

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIM 152
            N   P+I            AGR   A +L  S+   GI+
Sbjct: 536 SNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIV 575



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ AL+   ++++ G  PD +T+N+++ G+C +  +++A+ + + +      P+  
Sbjct: 240 KEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVY 299

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CK G  + A  +  +M+ +    N VTY+ LI    K   +++A D+   +
Sbjct: 300 TYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARIL 359

Query: 124 CENNISPNIAGRPTE------------AMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P++    T             AM++++ M   G  PD    S L D
Sbjct: 360 VSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILID 411



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 75/131 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ +  ++ + GL+PD IT+ T++ G+     L+ A+++ +++        
Sbjct: 168 LCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLT 227

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +++  +L++ FCKEGR+++A     ++ E+G   + VT++ L++G+ +  N+  A D+ +
Sbjct: 228 NVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVD 287

Query: 122 EMCENNISPNI 132
            M E    P++
Sbjct: 288 FMIEKGFDPDV 298



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+++  L     L  ++ + G+  D+ T+N +I   C  ++L  A+ + E++    LKP+
Sbjct: 133 LVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPD 192

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITFT L+  F +EG ++ A  M  +ML  G     V+   L++G+ K   ++ A     
Sbjct: 193 EITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVL 252

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           E+ E   SP+              G   +A+ + D M+  G  PD
Sbjct: 253 EVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPD 297



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +L  Q+   GL+PD  TYN+++  +C +  +++A  + + +     +P+
Sbjct: 483 LCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPD 542

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   C+ GR+D A+ +   +  KG       Y+ +I   F  +  K    ++ 
Sbjct: 543 IFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFR 602

Query: 122 EMCENNISP-------------NIAGRPTEAMQLYDSMLRNGIMPD 154
           EM E +  P             N  G   EA+     ML  GI+P+
Sbjct: 603 EMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPE 648



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G +PD   YN  +      N+L     L  K+    +  +  TF +LI A CK  ++  A
Sbjct: 118 GFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPA 177

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI---- 132
            +M  +M   G K + +T++ L+ G+ +  ++  A  + ++M        N+S  +    
Sbjct: 178 ILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNG 237

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               GR  EA++    +   G  PD +  ++L +
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVN 271


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 16/176 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   D A  LF ++  +G+ P +I+Y ++I G+C   + +EA +LF ++    ++PN
Sbjct: 252 LCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPN 311

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +LID  CKEG++ +A  +   M+++G   N++TY+ LI+G+    ++ SA +++ 
Sbjct: 312 VVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFV 371

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
            M      P++              +  EAM+LY+ ML+ G  PD    G LL+ L
Sbjct: 372 SMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGL 427



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 77/125 (61%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A++LF +L    ++ DI  +N +I G C   +L+ A +LFEKL   +L+P+ +T+ I
Sbjct: 468 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 527

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC+ G++  A ++F KM + G   + +TY+ LI G+F+S+ ++   ++   M + +
Sbjct: 528 MIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 587

Query: 128 ISPNI 132
           +S ++
Sbjct: 588 VSLDV 592



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 18/190 (9%)

Query: 2   LIKECHLDAALKLFGQ-LTDRGL-----EPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           L +  ++  ALKL  + L D  L     +P +I+Y+ II   C   R DEA  LFE++  
Sbjct: 211 LCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKV 270

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
             + P  I++T LI  FC  G+ ++A  +F++M+ +G + NVVT++ LID   K   +  
Sbjct: 271 QGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIE 330

Query: 116 AFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           A D+ E M +  I PN            + G    A +L+ SM   G  PD +  + L +
Sbjct: 331 AKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLIN 390

Query: 164 YNLQSSGSQE 173
              ++S  +E
Sbjct: 391 GYCKTSKVEE 400



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 89/165 (53%), Gaps = 9/165 (5%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  +  A  L   +  RG+ P+++TYN++I G+C +  L+ A +LF  +     +P
Sbjct: 321 VLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEP 380

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + I +T+LI+ +CK  ++++A  +++ ML+ G + +V TY  L+ G F+   +  A  ++
Sbjct: 381 DVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLF 440

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
             M        + G P + + +Y   L NG+  +G L   +  +N
Sbjct: 441 GVM-------KVYGIPGD-LYIYGIFL-NGLCKNGCLFEAMELFN 476



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT- 66
           L++A +LF  +  +G EPD+I Y  +I GYC  ++++EA++L+  +  V  +P+  T+  
Sbjct: 363 LNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGA 422

Query: 67  ----------------------------------ILIDAFCKEGRMDDATMMFSKMLEKG 92
                                             I ++  CK G + +A  +F+K+    
Sbjct: 423 LLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYN 482

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
            K ++  ++CLIDG  K+  +++A++++E++ +  + P++             G+  +A 
Sbjct: 483 IKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKAN 542

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
            L+  M +NG  PD +  +TL
Sbjct: 543 ILFQKMEKNGCTPDKITYATL 563



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 18/178 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H      L+ Q+   G+ PD  T N ++   C++NR+ E + +   +      P+
Sbjct: 106 LAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPD 165

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI   C E R+  A ++F++M + G   N +TY  L+ G  ++ N+  A  +++
Sbjct: 166 IVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQ 225

Query: 122 EMCEN------NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  +      N  P +              R  EA  L++ M   G+ P  +  ++L
Sbjct: 226 EMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSL 283



 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/121 (19%), Positives = 53/121 (43%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F  +      P + ++  ++ G   +    +   L+ ++    + P+  T  IL++
Sbjct: 80  AFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLN 139

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R+ +   + + +L +G   ++VTY+ LI G      +  A  ++  M +   +P
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP 199

Query: 131 N 131
           N
Sbjct: 200 N 200


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K+ G +  +G  P ++ +N +I G+C    LD A +L E +      PN  TFTI
Sbjct: 213 VELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTI 272

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK  R+ +A  +  KM+  G   NVVTYS +I+G  K   +  A+++++ M   N
Sbjct: 273 LITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRN 332

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN+            A R  EA QLY  M   G  PD +  ++L D
Sbjct: 333 CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLID 380



 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A KL   + ++G  P++ T+  +I G C  NR+ EA QL EK+      PN +T++ 
Sbjct: 248 LDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYST 307

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK+G++DDA  +F  M  +    NVVT++ LIDG  K++ ++ A  +Y  M E  
Sbjct: 308 VINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG 367

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGI 151
            +P+I            + +  EA QL+ ++  +G+
Sbjct: 368 CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 403



 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A +L  ++   G  P+++TY+T+I G C   ++D+A +LF+ +      PN
Sbjct: 277 LCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPN 336

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T  ILID  CK  R+++A  ++ +M E G   +++TY+ LIDG  KS  +  AF +++
Sbjct: 337 VVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQ 396

Query: 122 EMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPD 154
            + E+ +S   A             GR  +A +++  ++  G  PD
Sbjct: 397 TIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD 442



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 19/182 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP- 60
           L K   ++ A +L+ ++ + G  PDIITYN++I G C   ++DEA QLF+ +    +   
Sbjct: 347 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 406

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++T++ L   +   GRM DA  +FS +++KG   ++ TY+ LI  Y K+       ++ 
Sbjct: 407 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 466

Query: 121 EEMCENNISPNI-----------AGRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           EEM      P +            G  TE A+QL+DSM   G   D L+      YNL  
Sbjct: 467 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALI------YNLVV 520

Query: 169 SG 170
            G
Sbjct: 521 EG 522



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A++L  ++   G E + + + T++ G C   R+ EA++ F  +      P+ +T+T 
Sbjct: 73  LDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMA-KDCAPDVMTYTA 131

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ A CK G+ D+A  M  +M+ +G   + VT+S LIDG  K  + + AF V E++ +  
Sbjct: 132 LVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRG 191

Query: 128 ISPNIAGRPT 137
           +  + A   T
Sbjct: 192 MGNSDAAFET 201



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++++RG    + +YN ++ G   L R DEA Q+FE +      P   T  ++
Sbjct: 568 DDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVV 627

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C   ++DDA  +  +M + G   ++ T + LI GY KS     A  + EEM E  +
Sbjct: 628 ISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGL 687

Query: 129 SPN 131
            PN
Sbjct: 688 EPN 690



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 15/163 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSI 63
           H + A++LF  +  RG   D + YN ++ G    ++ D+A+ + E++      +  P+S 
Sbjct: 493 HTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSS 552

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
               L+++ C+ G+ DDA  +  KM E+G  A V +Y+ L+ G  + Q    A  V+E M
Sbjct: 553 AVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAM 612

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
                +P I            A +  +A +L   M + G  PD
Sbjct: 613 VSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPD 655



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  +  ++  +G  PD +T++T+I G C     ++A ++ E +    +  +
Sbjct: 136 LCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNS 195

Query: 62  SITFTILIDAFC-KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              F  +I   C K   ++ A+ +   ++ KG    V+ ++ +I+G+ K++++ SA+ + 
Sbjct: 196 DAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLL 255

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M E    PN+            A R  EA QL + M+  G  P+ +  ST+
Sbjct: 256 EVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTV 308



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 14/149 (9%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
           C LNR  EA+ LF         PN  T+ ILI  F   G +D A  +  +M   G + N 
Sbjct: 33  CRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNA 92

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDS 145
           V ++ L+ G   +  +  A + +  M + + +P++            AG+  EA  +   
Sbjct: 93  VVHTTLMKGLCDAGRVVEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLRE 151

Query: 146 MLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           M+  G  PD +  STL D  L   GS+E 
Sbjct: 152 MVAQGCAPDTVTFSTLID-GLCKFGSEEQ 179



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             D A ++F  +   G  P+I T N +I   CS  ++D+A +L ++++ +   P+  T  
Sbjct: 601 RWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCN 660

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            LI  +CK GR D A  +  +M E G + N  T+  L
Sbjct: 661 TLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L     +D A +L  +++  G  PDI T NT+I GYC   R D A +L E++T   L+PN
Sbjct: 631 LCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 690

Query: 62  SITFTIL 68
             T  +L
Sbjct: 691 DTTHDLL 697



 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 13/129 (10%)

Query: 45  EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           E V LF      ++  N  +    +D  C+  R  +A  +F   + +    N  TY  LI
Sbjct: 5   ELVLLFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILI 64

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIM 152
            G+  + ++  A  + EEM  +    N             AGR  EA++ + +M ++   
Sbjct: 65  RGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-CA 123

Query: 153 PDGLLLSTL 161
           PD +  + L
Sbjct: 124 PDVMTYTAL 132


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 81/127 (63%), Gaps = 3/127 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK--LTCVQLKPNSITF 65
           +D A +L G +   G  PDI+TYN ++ G C ++++D A  L E+  L C +  PN +++
Sbjct: 229 VDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKC-EFAPNVVSY 287

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I  +C+  +MD+A+ +F +M+  G K NV T+S L+DG+ K+ +M SA  +++++  
Sbjct: 288 TTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILF 347

Query: 126 NNISPNI 132
           +  +PN+
Sbjct: 348 HGCAPNV 354



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
             P++++Y T+I GYC L+++DEA  LF ++     KPN  TF+ L+D F K G M  A 
Sbjct: 280 FAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASAL 339

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            M  K+L  G   NV+T + LI+GY ++  +    D++ EM   NI  N+          
Sbjct: 340 GMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISAL 399

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + R  EA  L   + ++ I+P   + + + D
Sbjct: 400 CKSNRLQEARNLLRILKQSDIVPLAFVYNPVID 432



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   + +AL +  ++   G  P++IT  ++I GYC    ++  + L+ ++    +  N
Sbjct: 329 FVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPAN 388

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI A CK  R+ +A  +   + +         Y+ +IDGY KS N+  A  +  
Sbjct: 389 LYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVA 448

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           EM E    P+            + GR  EA+ ++  ML +G  PD + + TL+   L+S
Sbjct: 449 EM-EEKCKPDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKS 506



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D + +L  +    G++ D+I YN  +      NRLD+A+ LF +L       ++ TF I
Sbjct: 159 FDVSKELLAEAQCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNI 218

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-EN 126
           LI   C  G +D+A  +   M   G   ++VTY+ L+ G  +   +  A D+ EE+C + 
Sbjct: 219 LIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKC 278

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +PN+    T            EA  L+  M+R+G  P+    S L D
Sbjct: 279 EFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVD 327



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  L   L    + P    YN +I GYC    +DEA  +  ++   + KP+
Sbjct: 399 LCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEME-EKCKPD 457

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFTILI   C +GR  +A  +F KML  G   + +T   L     KS     A  + E
Sbjct: 458 KLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTLSSCLLKSGMPGEAARIKE 517

Query: 122 EMCENNIS 129
            + EN  S
Sbjct: 518 TLFENQES 525


>gi|297834652|ref|XP_002885208.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331048|gb|EFH61467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 218

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 79/131 (60%), Gaps = 4/131 (3%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M+I+   L  A KL+ ++  RG+ PD ITYN++I G C  N+L EA ++F+ +       
Sbjct: 54  MMIRFSALGRAEKLYAEMLRRGIVPDTITYNSMIHGLCKQNKLAEARKVFDSMD----NK 109

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  TF  LI+ +CK  R+DD   +F +M  +G  ANV+TY+ LI G+ +  + K+A D++
Sbjct: 110 SCSTFNTLINGYCKARRVDDGIDLFCEMYRRGIVANVITYTTLIHGFRQVGDFKTALDIF 169

Query: 121 EEMCENNISPN 131
           +EM  N +  +
Sbjct: 170 QEMVSNGVRSS 180



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 12/156 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  + +  ++ D   YN II G C   +L+EA  LF  L    L+P+  T+ ++I  F 
Sbjct: 1   MFKVMRESNMDMDTAVYNIIIHGMCKAGKLEEAWNLFTNLLLSGLQPDVKTYNMMI-RFS 59

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
             GR   A  ++++ML +G   + +TY+ +I G  K   +  A  V++ M   + S    
Sbjct: 60  ALGR---AEKLYAEMLRRGIVPDTITYNSMIHGLCKQNKLAEARKVFDSMDNKSCSTFNT 116

Query: 132 ------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  A R  + + L+  M R GI+ + +  +TL
Sbjct: 117 LINGYCKARRVDDGIDLFCEMYRRGIVANVITYTTL 152



 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 43/82 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  + LF ++  RG+  ++ITY T+I G+  +     A+ +F+++    ++ +SI
Sbjct: 123 KARRVDDGIDLFCEMYRRGIVANVITYTTLIHGFRQVGDFKTALDIFQEMVSNGVRSSSI 182

Query: 64  TFTILIDAFCKEGRMDDATMMF 85
           TF  ++   C +  +  A  M 
Sbjct: 183 TFRDILPELCSKKELRKAVAML 204


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++  AL LF ++T RG+ PD  TY  +I G C   R+D+A +LF+K+    + P+
Sbjct: 206 LCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPD 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T   L++ FC   R+D+A  +     + G   +V  YSCLI G F+++  +    +Y 
Sbjct: 266 FVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYR 325

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E+N+ P++            AG+  +A++L + M  +G++PD +  + L
Sbjct: 326 KMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVL 377



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 69/125 (55%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A++ FG + D    PD+ TYN I+      N L  A+ ++ ++  +   PN  TF+IL
Sbjct: 143 DKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSIL 202

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  CK G + DA  +F +M ++G   +  TY  +I G  +S+ +  A+ ++++M ++ +
Sbjct: 203 IDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGV 262

Query: 129 SPNIA 133
            P+  
Sbjct: 263 GPDFV 267



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 66/113 (58%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L  ++T+ G+ PD + YN +I G+C +  L EA  L  +++     PN  T++ILI 
Sbjct: 355 ALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILIS 414

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             C+ G   DA  +F++M + G   + VT++ LIDG  K+  ++ A  ++ +M
Sbjct: 415 GMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM 467



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA---VQLFEK------ 52
           L +   +D A +LF ++ D G+ PD +T N ++ G+C L+R+DEA   ++LFEK      
Sbjct: 241 LCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLD 300

Query: 53  ---LTC-------------VQL----------KPNSITFTILIDAFCKEGRMDDATMMFS 86
               +C             VQL          KP+   +TI++    + G++ DA  + +
Sbjct: 301 VRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLN 360

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M E G   + V Y+ LI G+     +  A  +  E+  ++  PN+             G
Sbjct: 361 EMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNG 420

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              +A ++++ M + G  P  +  ++L D
Sbjct: 421 LTRDAQEIFNEMEKLGCYPSAVTFNSLID 449



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 59/119 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A ++  QL D G  P I TYN ++ G+C L   + A +LF ++    L P+++T+  
Sbjct: 505 IHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGT 564

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           LI+   +  R +DA  +F +M + G   +   Y  ++    +   +  AF ++ +   N
Sbjct: 565 LINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRN 623



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI +  L+   +    L + G++     +  +I  Y  +   D+A++ F  +      P
Sbjct: 100 LLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTP 159

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  T+ +++D   ++  +  A  ++++M++     NV T+S LIDG  KS N+K A  ++
Sbjct: 160 DVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLF 219

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +EM +  I P+       I+G     R  +A +L+D M  +G+ PD
Sbjct: 220 DEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPD 265



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 48/171 (28%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----------------- 53
           A ++F ++   G  P  +T+N++I G C   +L++A  LF K+                 
Sbjct: 425 AQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPS 484

Query: 54  --------------------------TCVQLK-----PNSITFTILIDAFCKEGRMDDAT 82
                                       +QL      P   T+ IL++ FCK G  + A 
Sbjct: 485 HVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAY 544

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
            +F +M  KG   + VTY  LI+G  + Q  + A+ V+++M +N  +P+ A
Sbjct: 545 KLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAA 595



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 1/117 (0%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + + A KLF ++  +GL PD +TY T+I G     R ++A ++F+++      P++  + 
Sbjct: 539 NFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYR 598

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++   C+   +  A  ++ K L +  ++        I+GYF+ Q ++ A     EM
Sbjct: 599 TMMTWMCRRMELPRAFSLWLKYL-RNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEM 654


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LDAA  L  ++ D G  P+++TY  +I G C   R  +A+Q  +++     +P+
Sbjct: 55  LCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPD 114

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK-MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+  LI   C   RMDDA ++  + M+E G   +VVTY+  I G  K+  +    ++ 
Sbjct: 115 LVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEML 174

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM    ISP++            A R  +A Q++  ML  G +PD L  S + D
Sbjct: 175 EEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLD 229



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L   +   G +  ++TY T+I G C    LD A  L +K+      PN +T+T LID
Sbjct: 29  ALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALID 88

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE-MCENNIS 129
             CK  R  DA     +ML  G + ++VTY+ LI G   +  M  A  V +E M E+   
Sbjct: 89  GLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRI 148

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           P++            AG+  + +++ + M R GI PD
Sbjct: 149 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPD 185



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 68/119 (57%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA L L   + + G  PD++TYNT I G C   +LD+ +++ E++    + P+ +TF  +
Sbjct: 133 DAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSI 192

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           I   CK  R+DDA  +F  MLE+G   + +TYS ++D   ++  + +  +V E M ++ 
Sbjct: 193 ISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 70/124 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD  L++  ++   G+ PD++T+ +II G C  NR+D+A Q+F+ +      P+
Sbjct: 161 LCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 220

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T++I++D   +  R+D    +   M++ G  A   TY+ LI    ++ +++SA   YE
Sbjct: 221 SLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYE 280

Query: 122 EMCE 125
           +  E
Sbjct: 281 QAME 284



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 23/137 (16%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +  R    D   YNT+I G C   +   A++L   +       + +T+T LID  CK G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
           +D A  +  KM + G   NVVTY+ LIDG  K++                       RP 
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKAR-----------------------RPH 97

Query: 138 EAMQLYDSMLRNGIMPD 154
           +A+Q    MLR+G  PD
Sbjct: 98  DAIQTVKRMLRSGCEPD 114



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 2/108 (1%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-LTCVQLKPNSITFTILIDAFCKEG 76
           + + G  P++++YN +I G C    +D+A +L  K L     KP+ I F  LI  FCK G
Sbjct: 317 MIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAG 376

Query: 77  RMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           R+  A  +  +M  K     +VVTY+ +IDG  K  ++K A  + EEM
Sbjct: 377 RLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEM 424



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 49/211 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  + +RG  PD +TY+ ++      NRLD   ++ E +        
Sbjct: 196 LCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYAL 255

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK---------------------------------- 87
           S T+  LI A  + G ++ A+  + +                                  
Sbjct: 256 SATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILL 315

Query: 88  -MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNI------------A 133
            M+E G   N+++Y+ +IDG  KS N+  A+ +  +M ++    P++            A
Sbjct: 316 GMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKA 375

Query: 134 GRPTEAMQLYDSM-LRNGIMPDGLLLSTLAD 163
           GR ++A QL   M  +N  +PD +  +T+ D
Sbjct: 376 GRLSQAQQLLKEMKAKNICVPDVVTYNTMID 406



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-K 59
           L K  ++D A KL  ++ D G  +PD+I +NT+I G+C   RL +A QL +++    +  
Sbjct: 336 LCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICV 395

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           P+ +T+  +ID   K G +  A ++  +M   G
Sbjct: 396 PDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 76/130 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +  A  +F +L ++GL P+  TYN++I G C    +D+A QL E++    + P+
Sbjct: 601 LSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD 660

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILID  CK G ++ A  +F  +  +G   N VTY+ ++DGY KS+N  +AF + E
Sbjct: 661 IVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLE 720

Query: 122 EMCENNISPN 131
           EM    + P+
Sbjct: 721 EMLLRGVPPD 730



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A++L   + D+GL PD+ TY+ +I G+C   R  EA  +  ++  V LKP  IT+  
Sbjct: 257 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 316

Query: 68  LIDAF-----------------------------------CKEGRMDDATMMFSKMLEKG 92
           LID F                                   CK G+M+ A  +  +M+EKG
Sbjct: 317 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 376

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
            + +  TYS LI+G+ + QNM  AF++ +EM +  ++P +             G      
Sbjct: 377 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 436

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
            +   M+ NG+ P+ ++ +TL
Sbjct: 437 AILREMVMNGLKPNAVVYTTL 457



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++D A +L  ++  +G+ PDI+TYN +I G C    ++ A  LF+ +    L PN +
Sbjct: 638 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 697

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++D +CK      A  +  +ML +G   +   Y+ +++   K +  + A D+++EM
Sbjct: 698 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM 757

Query: 124 CENNISPNI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            E   +  +           +G+  EA  L + M+    +P+ +  ++L D+N ++ 
Sbjct: 758 LEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAG 814



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  LF  +  RGL P+ +TY  ++ GYC       A QL E++    + P+
Sbjct: 671 LCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 730

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  + ++++  CKE + + A  +F +MLEKG  A+ V+++ LI+GY KS  ++ A  + E
Sbjct: 731 AFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLE 789

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E    PN             AG   EA +L+  M    +MP     ++L
Sbjct: 790 EMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL 841



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  A  +F  +  R +  D+ TY+ +I G     ++ EA  +F +L    L PN+ 
Sbjct: 568 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 627

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CK+G +D A+ +  +M  KG   ++VTY+ LIDG  K+  ++ A ++++++
Sbjct: 628 TYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 687

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
               ++PN             +  PT A QL + ML  G+ PD  + + + ++
Sbjct: 688 EGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNF 740



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE   + AL LF ++ ++G     +++NT+I GYC   +L EA  L E++   Q  PN +
Sbjct: 743 KEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 801

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CK G M +A  ++ +M E+       TY+ L+ GY    NM     ++EEM
Sbjct: 802 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGI-MPDGLLLS 159
               I P+              G   EA +L D +L  G+ M  G  L 
Sbjct: 862 VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLG 910



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ +  +  ++ ++G+ PD+  YN++I G+C   R++EA     ++   +L+PN+ 
Sbjct: 463 KEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAH 522

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   ID + K G M+ A   F++ML  G   NV  Y+ LI+G+ K  N+  AF V+  +
Sbjct: 523 TYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFI 582

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               +  ++             G+  EA  ++  +   G++P+    ++L
Sbjct: 583 LSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 632



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++  R L P ++TY+ II G C    L     +  ++    LKPN++ +T L+ 
Sbjct: 400 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMT 459

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  KEGR++++ M+  +M E+G   +V  Y+ LI G+ K++ M+ A     EM E  + P
Sbjct: 460 AHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRP 519

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N             AG    A + ++ ML  G++P+
Sbjct: 520 NAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 555



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 29/191 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-----------------LD 44
           L+K   ++   K+F  +    + PD+ TY  +I  +C +                   LD
Sbjct: 199 LLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLD 258

Query: 45  EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           EA++L   +    L P+  T+ ILI+ FC E R  +A +M  +M++ G K   +TY+ LI
Sbjct: 259 EAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALI 318

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIM 152
           DG+ +  +++ AF + +EM    I  N+            AG+  +A+++   M+  G+ 
Sbjct: 319 DGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVE 378

Query: 153 PDGLLLSTLAD 163
           PD    S L +
Sbjct: 379 PDSQTYSLLIE 389



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 13/178 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L  ++  RG+ PD   YN I+   C   + ++A+ LF+++       ++++F  LI
Sbjct: 714 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLI 772

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           + +CK G++ +A  +  +M+EK    N VTY+ LID   K+  M  A  ++ EM E N+ 
Sbjct: 773 EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM 832

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           P               G  +E   L++ M+  GI PD +    + D   +     E C
Sbjct: 833 PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 890



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A + F ++   G+ P++  Y  +I G+C    + EA  +F  +   ++  +  
Sbjct: 533 KAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQ 592

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI    + G+M +A  +FS++ EKG   N  TY+ LI G  K  N+  A  + EEM
Sbjct: 593 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           C   I+P+I            AG    A  L+D +   G+ P+ +  + + D
Sbjct: 653 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD 704



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +++  ++ A ++  ++   G+E ++I +NT++ G C   ++++A+++ +++    ++P+
Sbjct: 321 FMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD 380

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T+++LI+  C+   M  A  +  +M ++     V+TYS +I+G  +  N++    +  
Sbjct: 381 SQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILR 440

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM  N + PN              GR  E+  + + M   GI+PD
Sbjct: 441 EMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPD 485



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L     +  ++   GL+P+ + Y T++  +    R++E+  + E++    + P+   + 
Sbjct: 431 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 490

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  FCK  RM++A     +MLE+  + N  TY   IDGY K+  M+ A   + EM   
Sbjct: 491 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 550

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+             G  TEA  ++  +L   ++ D    S L
Sbjct: 551 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVL 597



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 41/154 (26%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+ ++ +R + P   TY +++ GY ++  + E   LFE++    ++P+ +T+ ++ID
Sbjct: 819 AKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMID 878

Query: 71  AFCKEG-----------------------------------------RMDDATMMFSKML 89
           A+C+EG                                          MD+A  +   M+
Sbjct: 879 AYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMV 938

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           + G  +N  +   L+DG     N + + ++ ++M
Sbjct: 939 KFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 972



 Score = 42.4 bits (98), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ + ++ ++  Y  +  L EAV +F      + +P+ ++   L+    K  +++    +
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144
           F  M       +V TY+ +I  + K  N+K A  V  EM E       A    EA++L  
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEK------ARLLDEAIELKR 265

Query: 145 SMLRNGIMPD 154
           SM+  G++PD
Sbjct: 266 SMVDKGLVPD 275


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL++  ++ ++G   D++ YNTI+ G C    L +A  LF+++    + P+  TFT 
Sbjct: 376 MSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTT 435

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CKEG M  A  +F  M +K  K ++VTY+ LIDG+ K+  M+ A +++ EM    
Sbjct: 436 LIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRK 495

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           I PN              G  +EA +L+D M+R GI P
Sbjct: 496 IFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKP 533



 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 75/124 (60%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +  G++   G+ PD ITYNT+I G+     +D+A  L  K+    L+P+ +T+ +
Sbjct: 551 LSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNV 610

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++ FC++GRM +A ++  KM+E+G   +  TY+ LI+GY    N+K AF  ++EM +  
Sbjct: 611 ILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRG 670

Query: 128 ISPN 131
             P+
Sbjct: 671 FVPD 674



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  LF ++ +RG+ PD  T+ T+I G+C    + +A+ LF  +T   +KP+
Sbjct: 405 LCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPD 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILID FCK   M+ A  ++++M+ +    N ++Y+ L++GY     +  AF +++
Sbjct: 465 IVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWD 524

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    I P +            +G  ++A +    M+  G+ PD +  +TL +
Sbjct: 525 EMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLIN 578



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+ ++  +G++P ++T NT+I GYC    L +A +   K+    + P+SIT+  LI+
Sbjct: 519 AFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLIN 578

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F K   MD A  + +KM  KG + +VVTY+ +++G+ +   M+ A  +  +M E  I P
Sbjct: 579 GFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDP 638

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPD 154
           + +   T            EA + +D ML+ G +PD
Sbjct: 639 DRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L+ ++  R + P+ I+Y  ++ GYC+L  + EA +L++++    +KP  +
Sbjct: 477 KTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLV 536

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   +I  +C+ G +  A     KM+ +G   + +TY+ LI+G+ K + M  AF +  +M
Sbjct: 537 TCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM 596

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P++             GR  EA  +   M+  GI PD    +TL +
Sbjct: 597 ETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLIN 648



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 96/179 (53%), Gaps = 17/179 (9%)

Query: 1   MLIKECHLDAALK---LFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCV 56
           +L++ C  +  L+   +F  +  RG+ PD+I+++++I G  S N  LD+A+  F  +   
Sbjct: 296 LLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLI-GVSSRNGHLDQALMYFRDMKTS 354

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L P+++ +TILI+ +C+ G M +A  +  KMLE+G   +VV Y+ +++G  K + +  A
Sbjct: 355 GLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADA 414

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +++EM E  + P+              G   +A+ L+  M +  I PD +  + L D
Sbjct: 415 NALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILID 473



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D        +  +G+  DI+TYNT+I  YC    L EA ++   ++   LKP 
Sbjct: 195 LCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPT 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+  CK+GR   A  +F++ML  G   +  TY+ L+    ++ N   A D++ 
Sbjct: 255 LFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFS 314

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    +SP++             G   +A+  +  M  +G++PD ++ + L +
Sbjct: 315 DMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILIN 368



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A  +F ++   GL PD  TYNT++   C  N   EA  +F  +    + P+
Sbjct: 265 LCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPD 324

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I+F+ LI    + G +D A M F  M   G   + V Y+ LI+GY ++  M  A ++ +
Sbjct: 325 LISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRD 384

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E   + ++    T            +A  L+D M+  G++PD    +TL
Sbjct: 385 KMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTL 436



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D A +++ ++   G+E ++ T N ++   C  +++D+       +    +  +
Sbjct: 160 LVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFAD 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+A+C+EG + +A  + + M  KG K  + TY+ +I+G  K      A  V+ 
Sbjct: 220 IVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFN 279

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    +SP+     T            EA  ++  ML  G+ PD +  S+L
Sbjct: 280 EMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSL 331



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   L+     F  L  +G    I   N+++ G   +  +D A +++ ++    ++ N 
Sbjct: 126 VQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNV 185

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  I+++A CK+ ++DD       M +KG  A++VTY+ LI+ Y +   +  AF+V   
Sbjct: 186 YTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNS 245

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M    + P +             GR   A  +++ ML  G+ PD    +TL
Sbjct: 246 MSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTL 296



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 52/91 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K  ++D A  L  ++  +GL+PD++TYN I+ G+C   R+ EA  +  K+    + P+
Sbjct: 580 FVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPD 639

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+T LI+ +  +  + +A     +ML++G
Sbjct: 640 RSTYTTLINGYVSQDNLKEAFRFHDEMLQRG 670


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 76/130 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +  A  +F +L ++GL P+  TYN++I G C    +D+A QL E++    + P+
Sbjct: 610 LSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD 669

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILID  CK G ++ A  +F  +  +G   N VTY+ ++DGY KS+N  +AF + E
Sbjct: 670 IVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLE 729

Query: 122 EMCENNISPN 131
           EM    + P+
Sbjct: 730 EMLLRGVPPD 739



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++  ++ ++G  P+++TYN II G C    LDEA++L   +    L P+  T+ ILI+
Sbjct: 234 AKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILIN 293

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC E R  +A +M  +M++ G K   +TY+ LIDG+ +  +++ AF + +EM    I  
Sbjct: 294 GFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEA 353

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+            AG+  +A+++   M+  G+ PD    S L +
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 398



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A++L   + D+GL PD+ TY+ +I G+C   R  EA  +  ++  V LKP  IT+  
Sbjct: 266 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 325

Query: 68  LIDAF-----------------------------------CKEGRMDDATMMFSKMLEKG 92
           LID F                                   CK G+M+ A  +  +M+EKG
Sbjct: 326 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 385

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
            + +  TYS LI+G+ + QNM  AF++ +EM +  ++P +             G      
Sbjct: 386 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 445

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
            +   M+ NG+ P+ ++ +TL
Sbjct: 446 AILREMVMNGLKPNAVVYTTL 466



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++D A +L  ++  +G+ PDI+TYN +I G C    ++ A  LF+ +    L PN +
Sbjct: 647 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 706

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++D +CK      A  +  +ML +G   +   Y+ +++   K +  + A D+++EM
Sbjct: 707 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM 766

Query: 124 CENNISPNI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            E   +  +           +G+  EA  L + M+    +P+ +  ++L D+N ++ 
Sbjct: 767 LEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAG 823



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  LF  +  RGL P+ +TY  ++ GYC       A QL E++    + P+
Sbjct: 680 LCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 739

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  + ++++  CKE + + A  +F +MLEKG  A+ V+++ LI+GY KS  ++ A  + E
Sbjct: 740 AFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLE 798

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E    PN             AG   EA +L+  M    +MP     ++L
Sbjct: 799 EMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL 850



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  A  +F  +  R +  D+ TY+ +I G     ++ EA  +F +L    L PN+ 
Sbjct: 577 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 636

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CK+G +D A+ +  +M  KG   ++VTY+ LIDG  K+  ++ A ++++++
Sbjct: 637 TYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 696

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
               ++PN             +  PT A QL + ML  G+ PD  + + + ++
Sbjct: 697 EGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNF 749



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 14/162 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE   + AL LF ++ ++G     +++NT+I GYC   +L EA  L E++   Q  PN +
Sbjct: 752 KEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 810

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CK G M +A  ++ +M E+       TY+ L+ GY    NM     ++EEM
Sbjct: 811 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 870

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
               I P+              G   EA +L D +L  G MP
Sbjct: 871 VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG-MP 911



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ +  +  ++ ++G+ PD+  YN++I G+C   R++EA     ++   +L+PN+ 
Sbjct: 472 KEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAH 531

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   ID + K G M+ A   F++ML  G   NV  Y+ LI+G+ K  N+  AF V+  +
Sbjct: 532 TYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFI 591

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               +  ++             G+  EA  ++  +   G++P+    ++L
Sbjct: 592 LSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 641



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++  R L P ++TY+ II G C    L     +  ++    LKPN++ +T L+ 
Sbjct: 409 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMT 468

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  KEGR++++ M+  +M E+G   +V  Y+ LI G+ K++ M+ A     EM E  + P
Sbjct: 469 AHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRP 528

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N             AG    A + ++ ML  G++P+
Sbjct: 529 NAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 564



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 13/178 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L  ++  RG+ PD   YN I+   C   + ++A+ LF+++       ++++F  LI
Sbjct: 723 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLI 781

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           + +CK G++ +A  +  +M+EK    N VTY+ LID   K+  M  A  ++ EM E N+ 
Sbjct: 782 EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM 841

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           P               G  +E   L++ M+  GI PD +    + D   +     E C
Sbjct: 842 PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 899



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A + F ++   G+ P++  Y  +I G+C    + EA  +F  +   ++  +  
Sbjct: 542 KAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQ 601

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI    + G+M +A  +FS++ EKG   N  TY+ LI G  K  N+  A  + EEM
Sbjct: 602 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           C   I+P+I            AG    A  L+D +   G+ P+ +  + + D
Sbjct: 662 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD 713



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +++  ++ A ++  ++   G+E ++I +NT++ G C   ++++A+++ +++    ++P+
Sbjct: 330 FMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD 389

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T+++LI+  C+   M  A  +  +M ++     V+TYS +I+G  +  N++    +  
Sbjct: 390 SQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILR 449

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM  N + PN              GR  E+  + + M   GI+PD
Sbjct: 450 EMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPD 494



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 11   ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            A +L+ ++ +R + P   TY +++ GY ++  + E   LFE++    ++P+ +T+ ++ID
Sbjct: 828  AKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMID 887

Query: 71   AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS- 129
            A+C+EG + +A  +  ++L KG   +V  Y  LI    K +       +  E+ E+    
Sbjct: 888  AYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRL 947

Query: 130  --P---------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
              P          IAG   EA ++  SM++ G + +   L  L D N   + S++
Sbjct: 948  GLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSED 1002



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L     +  ++   GL+P+ + Y T++  +    R++E+  + E++    + P+   + 
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 499

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  FCK  RM++A     +MLE+  + N  TY   IDGY K+  M+ A   + EM   
Sbjct: 500 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 559

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            + PN+             G  TEA  ++  +L   ++ D
Sbjct: 560 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 599



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
             P +++ N+++      N+++   ++F+ +   ++ P+  T+T +I A CK G + DA 
Sbjct: 176 FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAK 235

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +  +M EKG   N+VTY+ +I G  +++ +  A ++   M +  + P++          
Sbjct: 236 RVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGF 295

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               R  EA  +   M+  G+ P+ +  + L D
Sbjct: 296 CMEKRSREAKLMLLEMIDVGLKPEPITYNALID 328



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ + ++ ++  Y  +  L EAV +F      + +P+ ++   L+    K  +++    +
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           F  M       +V TY+ +I  + K  N+K A  V  EM E   SPN+            
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCR 262

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
           A    EA++L  SM+  G++PD
Sbjct: 263 ARLLDEAIELKRSMVDKGLVPD 284



 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 35/145 (24%)

Query: 14   LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            LF ++  +G+EPD +TY  +I  YC    + EA +L +++    +  +   +  LI A C
Sbjct: 866  LFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALC 925

Query: 74   KE-----------------------------------GRMDDATMMFSKMLEKGPKANVV 98
            K+                                   G MD+A  +   M++ G  +N  
Sbjct: 926  KKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTT 985

Query: 99   TYSCLIDGYFKSQNMKSAFDVYEEM 123
            +   L+DG     N + + ++ ++M
Sbjct: 986  SLGDLVDGNQNGANSEDSDNLLKQM 1010


>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+  D++TYN +I G C + RL+EA+ L EK+  V++  NS+ F ++ID  CK G M+ A
Sbjct: 200 GIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEKA 259

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             + S+M E+  + NV+T+S LIDG+    N+++A  +Y EM    I P++         
Sbjct: 260 IEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDG 319

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               G   EA +L+  ML  G+ P+   +S + D
Sbjct: 320 HCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVID 353



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 82/127 (64%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C L+ A+ L  ++ +  +  + + +N +I G C +  +++A+++  ++T   ++PN ITF
Sbjct: 219 CRLEEAMGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITF 278

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +ILID FC +G +  A  ++++M+ KG   +VVTY+ LIDG+ K  N K AF +++EM +
Sbjct: 279 SILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLD 338

Query: 126 NNISPNI 132
             +SPN+
Sbjct: 339 AGLSPNM 345



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+++  Q+T+  +EP++IT++ +I G+C+   +  A+ L+ ++    + P+ +T+T 
Sbjct: 256 MEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTA 315

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY------- 120
           LID  CK G   +A  +  +ML+ G   N+ T SC+IDG  K      A  ++       
Sbjct: 316 LIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLEKTGAG 375

Query: 121 ---EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
              ++M     SPN              G   +A + +  M  NG  PD L+  T+   +
Sbjct: 376 YPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTMLQAH 435

Query: 166 LQSS 169
            QS 
Sbjct: 436 FQSK 439



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 47/207 (22%)

Query: 14  LFGQLTDRGLEPDIIT-----------------------------------YNTIICGYC 38
           L+  +   GL PD++T                                   YN++I GYC
Sbjct: 122 LYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYC 181

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
               L EA+ L  ++    +  + +T+ ILI   C   R+++A  +  KM E    AN V
Sbjct: 182 KAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSV 241

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSM 146
            ++ +IDG  K  +M+ A +V  +M E  I PN+             G    AM LY  M
Sbjct: 242 XFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEM 301

Query: 147 LRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +  GI+PD +  + L D + +   ++E
Sbjct: 302 VIKGIVPDVVTYTALIDGHCKVGNTKE 328



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 68/131 (51%), Gaps = 10/131 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----------EKLTCVQLKP 60
           A +L  ++ D GL P++ T + +I G     R ++A+++F          +K+      P
Sbjct: 329 AFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSP 388

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           NS+ + ILI   C++G +  AT  F++M   G K +++ Y  ++  +F+S++M     ++
Sbjct: 389 NSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLH 448

Query: 121 EEMCENNISPN 131
            +M +  +  N
Sbjct: 449 ADMVKMGVIQN 459



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 29/178 (16%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPNSITFTILI 69
           A K+F ++ +RG+EP+++ Y           ++ EA  +F ++     + PN  T+  L+
Sbjct: 58  AQKVFDEMLERGIEPNVVIYG----------QMGEAEGVFGRMRESGVVTPNLYTYKTLM 107

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D +   G +     ++  ML+ G   +VVT++ LID   K  ++K+A + +  M + ++ 
Sbjct: 108 DGYSMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVV 167

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           PN             AG   EAM L   M R GI  D      +  YN+   G  + C
Sbjct: 168 PNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSD------VVTYNILIKGLCDIC 219



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 23/152 (15%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P +   N ++ G       D   +++  +   +  P  IT+ IL++  C +G   +A  +
Sbjct: 2   PTLQPCNALLHGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKV 61

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNI----------- 132
           F +MLE+G + NVV Y            M  A  V+  M E+  ++PN+           
Sbjct: 62  FDEMLERGIEPNVVIYG----------QMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYS 111

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             G       LY  ML+ G+ PD +  +TL D
Sbjct: 112 MMGDVKRVFYLYCDMLKPGLYPDVVTFATLID 143



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 11/137 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    D+  +++  +  R   P +ITY  ++   C+      A ++F+++    ++PN
Sbjct: 14  LVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKVFDEMLERGIEPN 73

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + +          G+M +A  +F +M E G    N+ TY  L+DGY    ++K  F +Y
Sbjct: 74  VVIY----------GQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLY 123

Query: 121 EEMCENNISPNIAGRPT 137
            +M +  + P++    T
Sbjct: 124 CDMLKPGLYPDVVTFAT 140



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGL----------EPDIITYNTIICGYCSLNRLDEAVQLFE 51
           L+K+   + A+K+F + T  G            P+ + Y  +I G C    + +A + F 
Sbjct: 355 LLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFA 414

Query: 52  KLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111
           ++     KP+ + +  ++ A  +   M D  M+ + M++ G   N   Y  L  GY ++ 
Sbjct: 415 EMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLHADMVKMGVIQNTFIYRVLSRGYRENG 474

Query: 112 NMKSAFDVYEEMCENNI 128
            +KSA    E + E  I
Sbjct: 475 YLKSALMCSEYLMEYGI 491


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++ +  +I G C   RLDEA  + E+      +P+ +T+ + ID  CK  R+DDA  +
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             KM EK      VTY+ L+DG  K+  +  A  V E+M E   SP +            
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           AGR  EA +++  ML NG  PD  + + L
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTAL 153



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 12/154 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  LD A  +  +    G EPD +TYN  I G C   R+D+A QL +K+   +  P 
Sbjct: 17  LCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPT 76

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+T L+D   K GR+D+A  +  +M+EKG    + TY+ +IDG  K+  ++ A  ++ 
Sbjct: 77  TVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFV 136

Query: 122 EMCENNISPNI------------AGRPTEAMQLY 143
           +M  N   P+             +G+P EA  LY
Sbjct: 137 DMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALY 170



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++   + F ++ +RG EPD +TY  +I G+     + +A +++ ++       +
Sbjct: 232 LCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVS 291

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+ I++D  CK GR+ +A   F  M E+G  A VVTYS L+DG+    N+ +A +++ 
Sbjct: 292 TVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFR 351

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M +    PN+            AG+  +A   ++ +L+  + PD
Sbjct: 352 RMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPD 396



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 17/191 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L  ++ ++   P  +TY  ++ G     RLDEA+ + E++      P 
Sbjct: 52  LCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPT 111

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++ID   K GR+++A  +F  ML  G + +   Y+ LI G  KS   + A+ +Y+
Sbjct: 112 LKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYK 171

Query: 122 EMCEN----NISPNI------------AGRPTEAMQLY-DSMLRNGIMPDGLLLSTLADY 164
           E           P++            AGR  EA Q++ D  +  G +PD +  +++ D 
Sbjct: 172 EANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDG 231

Query: 165 NLQSSGSQEHC 175
             +    +E C
Sbjct: 232 LCKLGRVEEGC 242



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A   F  + +RG    ++TY+ ++ G+CS   +  AV+LF ++     +PN
Sbjct: 302 LCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPN 361

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS-AFDVY 120
            +++ I+I   C+ G++  A   F K+L++    +V T++  + G  +  +  S   +++
Sbjct: 362 LVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELF 421

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M     SPN+            AG    A++++  M+  G+ PD ++ +TL
Sbjct: 422 ESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTL 474



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 41/191 (21%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA------------------ 46
           E ++ AA++LF ++ DRG EP++++YN II G C   +L +A                  
Sbjct: 340 EGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT 399

Query: 47  ------------------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                             V+LFE +      PN  +++IL+D  C+ G ++ A  +F +M
Sbjct: 400 FNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREM 459

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLR 148
           + +G   +VV ++ LI     +  +  A +V+ E+ E   +P+          L D + R
Sbjct: 460 VSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL-ERRSAPD----AWSYWSLLDGLSR 514

Query: 149 NGIMPDGLLLS 159
              M +  LLS
Sbjct: 515 CERMEEARLLS 525



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL++F ++  RG+ PD++ +NT+I   C   R+DEA+++F +L   +  P++ ++  
Sbjct: 449 LEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELE-RRSAPDAWSYWS 507

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG 92
           L+D   +  RM++A ++   M  +G
Sbjct: 508 LLDGLSRCERMEEARLLSFHMKLQG 532


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + AL L+ +   RGL  ++IT+NT+I G C + R+ EA +L +++  ++  P+
Sbjct: 474 LFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPD 533

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T+  L D +CK G++  AT + +KM   G   +V  ++  I G+F ++      D++ 
Sbjct: 534 SLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHS 593

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    +SPN+             G   EA  LY  M+ NG+ P+  + S L
Sbjct: 594 EMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSAL 645



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 16/139 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  L   +   GL P+IITYN++I G C   +L  AV LF KL    + PN IT+  
Sbjct: 751 IDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNT 810

Query: 68  LIDAFCKEGR----------------MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111
           LID +CKEG+                M++A  +  +M+E     N +TY  LI GY KS 
Sbjct: 811 LIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSG 870

Query: 112 NMKSAFDVYEEMCENNISP 130
           NM+    +Y+EM    + P
Sbjct: 871 NMEEISKLYDEMHIRGLLP 889



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  LF  L ++   PD  TY+++I G  +   +DEA  L + +    L PN
Sbjct: 710 LCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPN 769

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK G++  A  +F+K+  KG   N +TY+ LID Y K      AF + +
Sbjct: 770 IITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQ 829

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +M E        G   EA++L D M+ N + P+ +   TL    ++S   +E
Sbjct: 830 KMVEE-------GYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEE 874



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++  ++ D G+  ++  YNT+I G C L R++E  ++ +++  V ++P+  ++  
Sbjct: 340 MDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNT 399

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +C+EG M  A  M   M+  G  A  +TY+ L+ G+     +  A  ++  M +  
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++PN             AG+  +A+ L+   L  G+  + +  +T+
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTV 505



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++   K+  ++ D G+ PD  +YNT+I GYC    + +A ++   +    L   
Sbjct: 369 LCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAAT 428

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  L+  FC    +DDA  ++  ML++G   N ++ S L+DG FK+   + A ++++
Sbjct: 429 TLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWK 488

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E     ++ N+             GR  EA +L D M      PD L   TL D
Sbjct: 489 ETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFD 542



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +  A++   ++   GLE +++ Y+ ++  YC +   ++A ++ E L    L PN +
Sbjct: 230 RDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVV 289

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           T+T+L+  +CK+GRM++A  +  +M E G    + V Y  +I+GY +   M  A  V  E
Sbjct: 290 TYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNE 349

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M +  I  N+             GR  E  ++   M   G+ PD    +TL D
Sbjct: 350 MRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLID 402



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 14/186 (7%)

Query: 4   KECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K+  ++ A ++  ++ + G +  D + Y  +I GYC   R+D+A ++  ++    +  N 
Sbjct: 300 KDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNL 359

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I+  CK GRM++   +  +M + G + +  +Y+ LIDGY +  +M+ AF++   
Sbjct: 360 FVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRM 419

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M  N ++       T            +A++L+  ML+ G+ P+ +  STL D  L  +G
Sbjct: 420 MVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLD-GLFKAG 478

Query: 171 SQEHCI 176
             E  +
Sbjct: 479 KTEQAL 484



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 12/143 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           + +N II G C   R+ +A  LFE L   +  P++ T++ LI      G +D+A  +   
Sbjct: 701 VMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDV 760

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGR 135
           ML  G   N++TY+ LI G  KS  +  A +++ ++    ISPN              G+
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGK 820

Query: 136 PTEAMQLYDSMLRNGIMPDGLLL 158
            TEA +L   M+  G M + + L
Sbjct: 821 TTEAFKLKQKMVEEGYMEEAIKL 843



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  ++GQ+   G+ PD  T   +   YC   R+ +AV+  E++  + L+ N + +  ++D
Sbjct: 202 AAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMD 261

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            +C  G  +DA  +   +  KG   NVVTY+ L+ GY K   M+ A  V +EM E
Sbjct: 262 CYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKE 316



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 38/198 (19%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-- 61
           KE +L  A  L+ ++ + G+ P++   + ++  +    ++DEA  + +KL  + + P   
Sbjct: 616 KEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS 675

Query: 62  ------------------------SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
                                   ++ + ++I   CK GR+ DA  +F  +  K    + 
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDS 145
            TYS LI G   S ++  AF + + M    ++PNI            +G+ + A+ L++ 
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNK 795

Query: 146 MLRNGIMPDGLLLSTLAD 163
           +   GI P+G+  +TL D
Sbjct: 796 LQSKGISPNGITYNTLID 813



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 39/201 (19%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +  +++ RGL P+++TY  +I G+C    L EA  L+ ++    + PN    + L+  F 
Sbjct: 591 IHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFY 650

Query: 74  KEGRMDDATMMFSKML--------------------------EKGPKANVVTYSCLIDGY 107
           KEG++D+A ++  K++                          +  P +  V ++ +I G 
Sbjct: 651 KEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGL 710

Query: 108 FKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDG 155
            KS  +  A  ++E +      P+             +G   EA  L D ML  G+ P+ 
Sbjct: 711 CKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNI 770

Query: 156 LLLSTLADYNLQSSGSQEHCI 176
           +  ++L  Y L  SG     +
Sbjct: 771 ITYNSLI-YGLCKSGKLSRAV 790



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 59/124 (47%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A  L  ++   G  P +  +N+ I G+    +  +   +  +++   L PN +T+ 
Sbjct: 549 QLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYG 608

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  +CKEG + +A  ++ +M+  G   NV   S L+  ++K   +  A  V +++   
Sbjct: 609 ALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI 668

Query: 127 NISP 130
           ++ P
Sbjct: 669 DMIP 672



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 12/156 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L +AL +F  +   G  P + + N ++           A  ++ ++    + P+  T  
Sbjct: 163 QLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVA 222

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+  A+C++GR+  A     +M   G + N+V Y  ++D Y      + A  + E +   
Sbjct: 223 IMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRK 282

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNG 150
            +SPN+             GR  EA ++   M   G
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETG 318



 Score = 40.4 bits (93), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 38/61 (62%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +++E +++ A+KL  Q+ +  ++P+ ITY T+I GY     ++E  +L++++    L P 
Sbjct: 831 MVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPT 890

Query: 62  S 62
           +
Sbjct: 891 N 891


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 72/124 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  L   +   GL P+I+TYN++I G C    L  AV LF+KL    + PN+IT+  
Sbjct: 776 VDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNT 835

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK+G + +A  +  +M+E+G    V TYS LI+G      M+ A  + ++M ENN
Sbjct: 836 LIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENN 895

Query: 128 ISPN 131
           + PN
Sbjct: 896 VDPN 899



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  L   L D+G   D  TY+++I G  +   +D A  L + +  V L PN
Sbjct: 735 LCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPN 794

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK G +  A  +F K+  KG   N +TY+ LID + K   +  AF + +
Sbjct: 795 IVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQ 854

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M E  I P +             G   EA++L D M+ N + P+ +   TL
Sbjct: 855 RMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTL 906



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 87/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A +L  ++ D  L+ ++  YN +I GYC L R+ EA  +  ++T V ++P++ ++ 
Sbjct: 364 RMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYN 423

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D +CK+G M+ A   ++ ML  G  A  +TY+ L+ G+    ++  A  ++  M + 
Sbjct: 424 SLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKK 483

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I+PN             +G+  +A+ L+   L  G+  +    +T+
Sbjct: 484 GIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTV 530



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             K    + AL L+ +   RGL  +  T+NT+I G C + R+ EA +L +K+   +  P+
Sbjct: 499 FFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPD 558

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L   +CK G MD A+ + +++   G    +  ++ LI G+F ++      D+  
Sbjct: 559 IITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILF 618

Query: 122 EMCENNISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGLLLSTL 161
           EM    +SPN       IAG   E     A  LY  M+  G++P+  + S+L
Sbjct: 619 EMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSL 670



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 20  DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79
           ++ L  D   +  +I GYC + R+++A +L  ++   +L+ N   + I+I+ +CK GRM 
Sbjct: 342 NKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMV 401

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------- 132
           +A  +  +M   G + +  +Y+ L+DGY K   M  AF+ Y  M  N  +          
Sbjct: 402 EAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALL 461

Query: 133 -----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                 G   +A++L+  ML+ GI P+ +  STL D   +S  +++
Sbjct: 462 KGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEK 507



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 64/112 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A+ LF +L  +G+ P+ ITYNT+I  +C    + EA +L +++    + P 
Sbjct: 805 LCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPT 864

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
             T++ILI+  C +G M++A  +  +M+E     N VTY  LI GY + +++
Sbjct: 865 VFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCESV 916



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 71/129 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A + +  +   G     +TYN ++ G+CSL  +D+A++L+  +    + PN I
Sbjct: 431 KKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEI 490

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           + + L+D F K G+ + A  ++ + L +G   N  T++ +I+G  K + M  A ++ ++M
Sbjct: 491 SCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKM 550

Query: 124 CENNISPNI 132
            +    P+I
Sbjct: 551 KQWRCPPDI 559



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L A + +F Q+   G  PD  T   +   YC +  +  A++  E++T + ++ N + +  
Sbjct: 224 LGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHA 283

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +++ +C+ G+ +DA  M   +  +G   N+VTY+ L+ GY   +NM+ A  V +E+ +N
Sbjct: 284 VMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKN 342



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 38/198 (19%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-- 61
           KE  L  A  L+ ++ ++GL P++   ++++  +    + DEA  + + L    + P+  
Sbjct: 641 KEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDIS 700

Query: 62  ------------------------SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
                                    I + I+I   CK GR++DA  + + + +KG  A+ 
Sbjct: 701 APRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADN 760

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDS 145
            TYS LI G   S  +  AFD+ + M    ++PNI            +G  + A+ L+  
Sbjct: 761 FTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKK 820

Query: 146 MLRNGIMPDGLLLSTLAD 163
           +   GI P+ +  +TL D
Sbjct: 821 LWTKGISPNAITYNTLID 838



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 13/161 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           I +N +I G C L R+++A  L   L       ++ T++ LI      G +D A  +   
Sbjct: 726 IMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDT 785

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           ML  G   N+VTY+ LI G  KS  +  A  +++++    ISPN              G 
Sbjct: 786 MLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGY 845

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            TEA +L   M+  GI P     S L +  L + G  E  I
Sbjct: 846 ITEAFKLKQRMIEEGIHPTVFTYSILIN-GLCTQGYMEEAI 885



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 66/125 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+L+  +  +G+ P+ I+ +T++ G+    + ++A+ L+++     L  N+ TF  
Sbjct: 470 IDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNT 529

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK  RM +A  +  KM +     +++TY  L  GY K  +M  A  +  E+    
Sbjct: 530 VINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLG 589

Query: 128 ISPNI 132
            +P I
Sbjct: 590 FAPTI 594



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 65/127 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++  +L + G  P I  +N++I G+    +  +   +  +++   L PN++ +  
Sbjct: 575 MDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGA 634

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +CKEG +  A  ++ +M+EKG   N+   S L+  +++      A  V + +   +
Sbjct: 635 LIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTD 694

Query: 128 ISPNIAG 134
           + P+I+ 
Sbjct: 695 MIPDISA 701



 Score = 35.4 bits (80), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 23/138 (16%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           +++ ++    +  +LD A+Q+F+++  +  + +  +   +++   + G +     +F +M
Sbjct: 175 SFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQM 234

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
              G   +  T + +   Y K + +  A +  EEM +  +  N+             G+ 
Sbjct: 235 QRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQT 294

Query: 137 TEAMQLYDSMLRNGIMPD 154
            +A ++ DS+   G  P+
Sbjct: 295 NDARRMLDSLPGRGFSPN 312


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   + A K+  Q+    + P++ITYNT+I G+CS+ +L +A+ L   L    L P+
Sbjct: 313 LCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPS 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +L+  FC++G    A  M  +M E+G K + VTY+ LID + +S NM++A  +  
Sbjct: 373 LVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRS 432

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M E  + P+            I G+  EA +L+ SM+   + P+ ++ +T+
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTM 484



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A K+  ++ +RG++P  +TY  +I  +   + ++ A+QL   +  + L P+  T+++LI
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLI 450

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC +G+M++A+ +F  M+EK  + N V Y+ +I GY K  +   A  ++ +M E  ++
Sbjct: 451 HGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELA 510

Query: 130 PNIAG------------RPTEAMQLYDSMLRNGIMP 153
           PN+A             +  EA  L + M+ +GI P
Sbjct: 511 PNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDP 546



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 73/125 (58%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A++L   + + GL PD+ TY+ +I G+C   +++EA +LF+ +    L+PN + + 
Sbjct: 423 NMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYN 482

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  +CKEG    A  +F  M EK    NV +YS LI    K + +K A D+ E+M ++
Sbjct: 483 TMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDS 542

Query: 127 NISPN 131
            I P+
Sbjct: 543 GIDPS 547



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D+ ++  +I G C    ++++  L  +L      PN + +T LID  CK+G ++ A  +F
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            +M + G  AN  TY+ LI G FK+   K  F++YE+M E+ + PN+             
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKD 281

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           GR  +A +++D M   G+  + +  +TL
Sbjct: 282 GRTKDAFKVFDEMRERGVSCNIVTYNTL 309



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++IK C     ++ +  L  +L + G  P+++ Y T+I G C    +++A  LF ++   
Sbjct: 168 IVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKF 227

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  N  T+T+LI    K G       M+ KM E G   N+ TY+C+++   K    K A
Sbjct: 228 GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDA 287

Query: 117 FDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           F V++EM E  +S NI              +  EA ++ D M    I P+ +  +TL D
Sbjct: 288 FKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLID 346



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
             +++ ++ + G+ P++ TYN ++   C   R  +A ++F+++    +  N +T+  LI 
Sbjct: 252 GFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIG 311

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+E + ++A  +  +M       N++TY+ LIDG+     +  A  +  ++    +SP
Sbjct: 312 GLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSP 371

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G  + A ++   M   GI P  +  + L D
Sbjct: 372 SLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A ++   L + GL P  + YNTI+ GYC +  +D A+   E++    L+PN
Sbjct: 252 LCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPN 311

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I F  +ID FC+   +D A     KM+ KG   +V TY+ LIDGY +       F + E
Sbjct: 312 CIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILE 371

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM EN   PN+             G+  EA  +   M+  G++P+  + + L D
Sbjct: 372 EMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLID 425



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 12/179 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++    D  L LF ++   G  PD + Y   +     L  L  A++LFE +   ++ PN
Sbjct: 41  LVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPN 100

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + +LI   CKE R+ DA  +F +M  +    N VT++ LIDGY K+  +  A  + E
Sbjct: 101 VFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRE 160

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            M +  + P+I            A R  EA  + + +  NG +PDG   S + D  L+S
Sbjct: 161 RMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKS 219



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A KLFG+++ R L P+ +T+NT+I GYC    +D A+ L E++   +++P+
Sbjct: 111 LCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPS 170

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN-MKSAFDVY 120
            ITF  L+   CK  R+++A  M +++   G   +  TYS + DG  KS +   +A D+Y
Sbjct: 171 IITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLY 230

Query: 121 EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E     +  +              G+  +A ++  S++ +G++P  ++ +T+ +
Sbjct: 231 REAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVN 285



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +   ++  +G+ P + TYN +I GY  L       Q+ E++     KPN I++  
Sbjct: 328 IDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGS 387

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CK+G++ +A M+   M+ +G   N   Y+ LIDG      ++ A   ++EM +N 
Sbjct: 388 LINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNG 447

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           I   I             G+  EA +++  +   G  PD +  ++L      ++G+ + C
Sbjct: 448 IGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLIS-GYSNAGNSQKC 506

Query: 176 I 176
           +
Sbjct: 507 L 507



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  +   +  RG+ P+   YN +I G C++ +L EA++ F++++   +   
Sbjct: 392 LCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGAT 451

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK G++ +A  MF  +   G   +V+TY+ LI GY  + N +   ++YE
Sbjct: 452 IVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYE 511

Query: 122 EMCE-------NNISPNIAGRPTEAMQ----LYDSMLRNGIMPDGLLLSTL 161
            M +       N   P I+G   E ++    L++ ML+  + PD ++ + +
Sbjct: 512 TMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAM 562



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C      ++  ++ + G +P++I+Y ++I   C   ++ EA  +   +    + PN+  +
Sbjct: 361 CVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIY 420

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            +LID  C  G++ +A   F +M + G  A +VTY+ LI G  K   +K A +++  +  
Sbjct: 421 NMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITS 480

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
               P++            AG   + ++LY++M + G+ P
Sbjct: 481 TGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKP 520



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 12/150 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++    L PD + YN +I  Y     + +A  L +++  + ++P++ T+  LI    
Sbjct: 543 LFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHL 602

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           KEG++ +   +   M  KG      TYS LI G+   ++   A+  Y EM EN   PN+ 
Sbjct: 603 KEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVC 662

Query: 134 ------------GRPTEAMQLYDSMLRNGI 151
                       GR  EA  +   M+ NG+
Sbjct: 663 ICNELSTGLRKDGRLQEAQSICSEMIANGM 692



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  A  L  ++ D G+ PD  TYN++I G+    +L E   L + +    L P + T++
Sbjct: 571 HVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYS 630

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   C     + A + + +MLE G   NV   + L  G  K   ++ A  +  EM  N
Sbjct: 631 LLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIAN 690

Query: 127 NI 128
            +
Sbjct: 691 GM 692



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 46/199 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F  +T  G  PD+ITYN++I GY +     + ++L+E +  + LKP 
Sbjct: 462 LCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPT 521

Query: 62  SITFTILIDAFCKEG----------------------------------RMDDATMMFSK 87
             TF  LI    KEG                                   +  A  +  +
Sbjct: 522 INTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKE 581

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAGR----- 135
           M++ G + +  TY+ LI G+ K   +    D+ ++M    + P        I G      
Sbjct: 582 MVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKD 641

Query: 136 PTEAMQLYDSMLRNGIMPD 154
              A   Y  ML NG +P+
Sbjct: 642 FNGAYVWYREMLENGFLPN 660



 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE  L     L   +  +GL P+  TY+ +I G+C L   + A   + ++      PN 
Sbjct: 602 LKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNV 661

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                L     K+GR+ +A  + S+M+  G
Sbjct: 662 CICNELSTGLRKDGRLQEAQSICSEMIANG 691


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 24/196 (12%)

Query: 4   KECHLDAALK----------LFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEK 52
           K C + A +K          ++ ++ D  L EP+++TY  ++ G C  +++ EA  L E 
Sbjct: 245 KACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLET 304

Query: 53  LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           ++    +PN I +  LID FCK G++D+A  +F+KML  G   NV TYS LID  FK + 
Sbjct: 305 MSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKR 364

Query: 113 MKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLST 160
           +  A  V  +M EN+ +PN+             G+  EA +L   M   G  P+ +  + 
Sbjct: 365 LDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTA 424

Query: 161 LADYNLQSSGSQEHCI 176
           + D     +G  + C+
Sbjct: 425 MID-GFGKAGRVDRCL 439



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A  +  ++  +G  PD  TY+ +I   C+ +++++A QLF+++    + P+  T+T 
Sbjct: 103 FEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTT 162

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D FCK G ++ A   F +M + G   NVVTY+ LI  Y K++ +  A +++E M  N 
Sbjct: 163 LLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNG 222

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGI-MPDGLLLSTLADYNLQ 167
             PNI            AG   +A Q+Y  M  + + +PD  +   + D  L+
Sbjct: 223 CVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELK 275



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L   ++  G EP+ I Y+ +I G+C + +LDEA ++F K+      PN
Sbjct: 289 LCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPN 348

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LID   K+ R+D A  + +KMLE     NVV Y+ ++DG  K      A+ +  
Sbjct: 349 VYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLML 408

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M E    PN+            AGR    ++L   M   G  P+ +    L ++
Sbjct: 409 MMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINH 463



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 29/185 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A +LF ++   G+ PD+ TY T++  +C +  +++A   F+++      PN +T+T 
Sbjct: 138 VEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTA 197

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A+ K  ++  A  +F  ML  G   N+VTY+ LIDG+ K+   + A  +Y  M  + 
Sbjct: 198 LIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDK 257

Query: 128 I-----------------SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLL 158
           +                  PN+            A +  EA  L ++M   G  P+ ++ 
Sbjct: 258 VDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIY 317

Query: 159 STLAD 163
             L D
Sbjct: 318 DALID 322



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD ALK+  ++ +    P+++ Y  ++ G C + + DEA +L   +      PN
Sbjct: 359 LFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPN 418

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID F K GR+D    +   M  KG   N +TY  LI+    +  +  A  + E
Sbjct: 419 VVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLE 478

Query: 122 EMCENNISPNIA 133
           EM +     +I 
Sbjct: 479 EMKQTYWPKHIG 490



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 44/209 (21%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L   + ++G  P+++TY  +I G+    R+D  ++L + +T     PN IT+ +L
Sbjct: 401 DEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVL 460

Query: 69  IDAFCKEGRMDDATMMFSKML---------------------------------EKGPKA 95
           I+  C  G +DDA  +  +M                                  E G   
Sbjct: 461 INHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVP 520

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-----------SPNIAGRPTEAMQLYD 144
            +  Y  LID + K+  ++ A +++EE+   +            S  +A +  +A +LY 
Sbjct: 521 ILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVSLIESLTLACKVDKAFKLYS 580

Query: 145 SMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            M R G +P+  +L  L    L+    +E
Sbjct: 581 DMTRRGFVPELSMLVCLIKGLLRVGKWEE 609



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 83/169 (49%), Gaps = 16/169 (9%)

Query: 23  LEPDIITYNTIICGY----CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78
           LE  ++     +C +    C + + ++A  +  ++      P+S T++ +I   C   ++
Sbjct: 79  LEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKV 138

Query: 79  DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG---- 134
           + A  +F +M   G   +V TY+ L+D + K   ++ A + ++EM ++  +PN+      
Sbjct: 139 EKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTAL 198

Query: 135 --------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
                   + + A ++++ ML NG +P+ +  + L D + ++  +++ C
Sbjct: 199 IHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKAC 247



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 30/166 (18%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD- 80
           G  P  + +N+++  YC       A +L +K+     +P  + + ILI   C    +   
Sbjct: 6   GCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSM 65

Query: 81  -----ATMMFSKMLEKGP---KANVVTYS---CLIDGYFKSQNMKSAFDVYEEMCENNIS 129
                A   +++MLE G    K NV  ++   C I  + K      A++V  EM      
Sbjct: 66  EVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEK------AYNVIREMMSKGFI 119

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P+             A +  +A QL+  M RNGI PD    +TL D
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLD 165



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A+L L  +L++ G  P +  Y  +I  +    RL+ A++L E+L+       + T+  LI
Sbjct: 505 ASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQN-TYVSLI 563

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++     ++D A  ++S M  +G    +    CLI G  +    + A  + + +C+ +I
Sbjct: 564 ESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSICQMDI 622



 Score = 38.5 bits (88), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS---- 115
           P+ + F  L+ A+C+ G    A  +  KM+  G +   V Y+ LI G   ++++ S    
Sbjct: 9   PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVI 68

Query: 116 --AFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             A   Y EM E  +  N              G+  +A  +   M+  G +PD    S +
Sbjct: 69  GLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKV 128

Query: 162 ADYNLQSSGSQE 173
             Y   +S  ++
Sbjct: 129 IGYLCNASKVEK 140


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   LD A+  F ++  +GL PDII+Y T+I G C + RLD A+  F ++    L P+ 
Sbjct: 307 VKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDI 366

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + FT LI  F   G+ + A  +F +M+++G +  VV ++ +ID  FK   +  A  +++ 
Sbjct: 367 VVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDL 426

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M   ++ PN+            AG+  E ++L D ML  G+ P+ +  +TL D
Sbjct: 427 MPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLD 479



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LDAA+  F Q+ D GL PDI+ +  +I G+    + ++A +LF ++    ++P 
Sbjct: 341 LCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPT 400

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + FT +ID   KEG++ +A  +F  M     K NVV+Y+ +I GYF +  +     + +
Sbjct: 401 VVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLD 460

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    + PN     T    L D ML  G+ PD    +TL D
Sbjct: 461 DMLSVGLKPNAVTFNT----LLDDMLSMGLKPDVATCNTLID 498



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++  Q+ D+ + PD  TYN+++ GY S  +L EAV++ ++++     PN +T+++
Sbjct: 172 MDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSM 231

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G   +A  + + M++     NV TY  L+ GY    ++    ++ + M +N 
Sbjct: 232 LIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNG 291

Query: 128 ISP-----NIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P     NI        GR  EAM  ++ M + G+MPD +   T+ D
Sbjct: 292 VRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMID 339



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  +  A  LF ++ DRG+ PD++T N+II G C +  +D+A ++  ++    + P+
Sbjct: 131 FFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPD 190

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+  +   G++ +A  +  +M   G   N VTYS LID   K      A ++  
Sbjct: 191 CTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILN 250

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M ++  +PN+A            G   E   L D M++NG+ PD
Sbjct: 251 SMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPD 295



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 12/153 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   +   G+ PD   +N  I  Y    RLDEA+  F K+    L P+ I++  +ID  C
Sbjct: 283 LIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLC 342

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K GR+D A   F +M++ G   ++V ++ LI G+      + A +++ EM +  I P + 
Sbjct: 343 KIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVV 402

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPD 154
                       G+ TEA  L+D M    + P+
Sbjct: 403 VFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPN 435



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 14/166 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFTILIDAFCKEGRMD 79
           G  PD+ +Y  ++ G C   + +EAV L   +        PN +++T +I  F KE  + 
Sbjct: 79  GCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVG 138

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------- 132
            A  +F +ML++G   +VVT + +IDG  K Q M  A +V  +M + +I P+        
Sbjct: 139 KAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLV 198

Query: 133 -----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                +G+  EA+++   M R+G  P+G+  S L D   +  G  E
Sbjct: 199 HGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTE 244



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 13/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H +A   L   +  RG  P++ TY  ++ GY +   L E   L + +    ++P+   F 
Sbjct: 242 HTEAREILNSMIQSRG-NPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFN 300

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I I A+ K GR+D+A + F+KM ++G   ++++Y  +IDG  K   + +A   + +M ++
Sbjct: 301 IQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDD 360

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +SP+I             G+  +A +L+  M+  GI P  ++ +T+ D
Sbjct: 361 GLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMID 409



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 19/117 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  LF  +    ++P++++YN II GY    +LDE ++L + +  V LKPN
Sbjct: 411 LFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPN 470

Query: 62  SITFTIL-------------------IDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           ++TF  L                   ID+ C++GR++D   +F +ML K  K + VT
Sbjct: 471 AVTFNTLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVT 527



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P++++Y T+I G+   + + +A  LF ++    + P+ +T   +ID  CK   MD A  +
Sbjct: 119 PNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEV 178

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M +K    +  TY+ L+ GY  S  +K A  + ++M  +   PN             
Sbjct: 179 LRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCK 238

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G  TEA ++ +SM+++   P+
Sbjct: 239 FGGHTEAREILNSMIQSRGNPN 260



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 15/158 (9%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           + + P  +TY  +I   C +  L+ A     ++    L+ N+I+FT ++   C E R  D
Sbjct: 7   KKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTSD 66

Query: 81  ATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE--NNISPNIAGRPT 137
           A  +  +   K G   +V +Y+ L+ G    +  + A D+   M E  ++  PN+    T
Sbjct: 67  AMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTT 126

Query: 138 ------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       +A  L+  ML  GI PD +  +++ D
Sbjct: 127 VIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIID 164


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+ +F ++   G  P++ITYNT+I GYC    L+ A++L E +    LKP++ T+T 
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTE 487

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F + G+++ AT +F  M+E G   N VTY+ +IDGYF    +  A  ++ +M E+ 
Sbjct: 488 LISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESG 547

Query: 128 ISPN-------IAGRP-----TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P+       I+G       +EA      M++ G++P+ +  ++  D
Sbjct: 548 NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFID 595



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  ++ ++ + G+ P ++T+NT+I   C   R+ EA  +   +      PN+ T+T 
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTS 242

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+   +D A  MF +M++ G   N VTYS LI+G      ++ A D+ EEM +  
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           I P +            AG  +EA++L   M + G +P+
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++   + A+ L+ ++   GL P  +TYN +I   C   R + A  +F+ +      P+
Sbjct: 352 LSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPS 411

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  +I  FC  G +  A ++F KML+ G   NV+TY+ LI GY K  N+ +A  + E
Sbjct: 412 TQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLE 471

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M  N + P+              G+   A  L+  M+ +GI P+ +  + + D
Sbjct: 472 IMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIID 525



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 13/182 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L+ A++L   +   GL+PD  TY  +I G+    +L+ A  LF  +    + PN +
Sbjct: 459 KQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV 518

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID +    ++DDA  +F KM+E G   +  TY+ +I G+ K+ ++  A +   +M
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKM 578

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + PN+             GR   A +++  M +    P+    S+L  Y L   G 
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLI-YGLCQEGR 637

Query: 172 QE 173
            E
Sbjct: 638 AE 639



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A  +F ++   G +P+ +TY+T+I G CS  RL+EA+ + E++    ++P   T+T
Sbjct: 252 NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYT 311

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I + + C  G   +A  +  KM ++G   N+ T++ LI G  +    + A  +Y +M  +
Sbjct: 312 IPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLAD 371

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            + P             + GR   A  ++  ML +G +P 
Sbjct: 372 GLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPS 411



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L G++  RG  P+I T+  +I G     + + A+ L+ K+    L P ++T+  LI+
Sbjct: 326 AVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C EGR + A  +F  ML  G   +  TY+ +I  +    +++ A  ++++M +   SP
Sbjct: 386 QLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSP 445

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           N+             G    AM+L + M  NG+ PD    + L        G  EH
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS-GFSRGGKLEH 500



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L+ A+ +  ++  +G+EP + TY   +   C      EAV+L  K+      PN
Sbjct: 282 LCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFT LI    ++G+ + A  ++ KML  G     VTY+ LI+        ++AF +++
Sbjct: 342 IQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFK 401

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  +   P+            + G   +AM ++D ML+ G  P+ +  +TL
Sbjct: 402 WMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTL 453



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+  TY ++I G+C  + LD A  +F+++      PNS+T++ LI+  C EGR+++A  M
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDM 294

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M++KG +  V TY+  +     +     A ++  +M +    PNI            
Sbjct: 295 LEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSR 354

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G+   A+ LY  ML +G++P  +  + L +
Sbjct: 355 DGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 17/170 (10%)

Query: 1   MLIKECHLDAALKLFGQ-LTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           ++IK C  +  +K   Q L++   + D    + ++ T++      + +D A  ++ K+  
Sbjct: 136 LMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLN 195

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
             ++P+ +TF  +I+  CK+GR+ +A ++ S +       N  TY+ LI G+ ++ N+  
Sbjct: 196 SGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255

Query: 116 AFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           AF +++ M ++   PN              GR  EAM + + M++ GI P
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305



 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 25/141 (17%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
           G++  +GL P++ITY + I G C   R   A ++F ++      PN  T++ LI   C+E
Sbjct: 576 GKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQE 635

Query: 76  GRMDDATM--MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           GR +DA M  + +++   G + NV TY+ L+ G                +C         
Sbjct: 636 GRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKG----------------LCGE------- 672

Query: 134 GRPTEAMQLYDSMLRNGIMPD 154
           GR  EA QL  SM + G+ P 
Sbjct: 673 GRCYEADQLVVSMQKKGLQPS 693



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--VQLFEKLTCVQLKPNSITFTIL 68
           A K+F ++  R   P++ TY+++I G C   R ++A    L  +LT    +PN  T+T L
Sbjct: 606 AFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTL 665

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +   C EGR  +A  +   M +KG + +   Y  L+ G  K+  ++SA +++  M
Sbjct: 666 VKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSM 720



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 52/99 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  +GL+P    Y  ++ G C   +++ A+ +F  +  +  + +   +  LI 
Sbjct: 678 ADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALIC 737

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           A CKE  +++A  +F  MLEK   ++ V ++ L+DG  K
Sbjct: 738 ALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLK 776



 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 9/142 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  +LT  G EP++ TY T++ G C   R  EA QL   +    L+P+   +  L+   C
Sbjct: 646 LLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGEC 705

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K  +++ A  +F  M   G + ++  Y  LI    K   ++ A  +++ M E + + +  
Sbjct: 706 KNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSD-- 763

Query: 134 GRPTEAMQLYDSMLRNGIMPDG 155
                  ++  ++L +G++ +G
Sbjct: 764 -------EVVWTVLLDGLLKEG 778



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +LI EC    +++AL +F  +   G +  +  Y  +IC  C  N ++EA  +F+ +    
Sbjct: 700 LLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKH 759

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
              + + +T+L+D   KEG  D    +   M  +    N  TY  L
Sbjct: 760 WNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVML 805


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++   +   G+E D+ TYNT+ CG    NR+DEA  L   +    ++PN +++T 
Sbjct: 258 VDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTT 317

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------------ 115
           LI   C EG M +A  +F +M   G + ++VTY+ ++DGY K  +++             
Sbjct: 318 LISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKG 377

Query: 116 -----------------------AFDVYEEMCENNISPNIA------------GRPTEAM 140
                                  A  ++EEM +    PN+             GR  EA 
Sbjct: 378 LVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAF 437

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           QLYD+ML +G+ PD  L S L
Sbjct: 438 QLYDNMLGDGLTPDDALYSAL 458



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++  + L  D+  Y+++I  YC    +  A ++F++     ++PN  T+  LI+ FC
Sbjct: 159 VFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFC 218

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G+M+ A M+ + M  +G   N + ++ +IDGY +   +  A ++   M +  I  ++ 
Sbjct: 219 KIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVY 278

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      A R  EA  L   M+  G+ P+ +  +TL
Sbjct: 279 TYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTL 318



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK+  +  A +   ++  +GL PDI +Y  ++ G+C   ++D A++LFE++     KPN 
Sbjct: 358 IKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNL 417

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF--KSQNMK 114
           + +T LI    KEGR ++A  ++  ML  G   +   YS L+      K QN+K
Sbjct: 418 VAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQNVK 471



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIIT---YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           HLD A  L  Q       PD +T    + ++ GYC   R+  A QL +++    +K N++
Sbjct: 46  HLDTAADLLKQAATSC--PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNAL 103

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  L+DA+ +E   D    M   M  +G +  V TY+ L+DG   ++++     V+EEM
Sbjct: 104 CYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEM 163

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              N+S ++            AG    A +++D  + NGI P+
Sbjct: 164 KSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPN 206



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F +    G+EP+  TY  +I G+C + +++ A  L   +    +  N I F  +ID
Sbjct: 191 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 250

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++  +D A  +   M + G + +V TY+ L  G  ++  M  A ++   M E  + P
Sbjct: 251 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 310

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           N              G   EA +L+  M  NG  P      +L  YN+   G
Sbjct: 311 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEP------SLVTYNVMMDG 356



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 57/108 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   ++   + + G+EP + TY  ++ G  +   + +   +FE++    L  +   ++ +
Sbjct: 119 DRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSV 178

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           I+A+C+ G +  A+ +F + +  G + N  TY  LI+G+ K   M++A
Sbjct: 179 INAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAA 226


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+ +F ++   G  P++ITYNT+I GYC    L+ A++L E +    LKP++ T+T 
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTE 487

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F + G+++ AT +F  M+E G   N VTY+ +IDGYF    +  A  ++ +M E+ 
Sbjct: 488 LISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESG 547

Query: 128 ISPN-------IAGRP-----TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P+       I+G       +EA      M++ G++P+ +  ++  D
Sbjct: 548 NLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFID 595



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  ++ ++ + G+ P ++T+NT+I   C   R+ EA  +   +      PN+ T+T 
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTS 242

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+   +D A  MF +M++ G   N VTYS LI+G      ++ A D+ EEM +  
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           I P +            AG  +EA++L   M + G +P+
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++   + A+ L+ ++   GL P  +TYN +I   C   R + A  +F+ +      P+
Sbjct: 352 LSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPS 411

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  +I  FC  G +  A ++F KML+ G   NV+TY+ LI GY K  N+ +A  + E
Sbjct: 412 TQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLE 471

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M  N + P+              G+   A  L+  M+ +GI P+ +  + + D
Sbjct: 472 IMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIID 525



 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 13/182 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L+ A++L   +   GL+PD  TY  +I G+    +L+ A  LF  +    + PN +
Sbjct: 459 KQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV 518

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID +    ++DDA  +F KM+E G   +  TY+ +I G+ K+ ++  A +   +M
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKM 578

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + PN+             GR   A +++  M +    P+    S+L  Y L   G 
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLI-YGLCQEGR 637

Query: 172 QE 173
            E
Sbjct: 638 AE 639



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A  +F ++   G +P+ +TY+T+I G CS  RL+EA+ + E++    ++P   T+T
Sbjct: 252 NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYT 311

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I + + C  G   +A  +  KM ++G   N+ T++ LI G  +    + A  +Y +M  +
Sbjct: 312 IPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLAD 371

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            + P             + GR   A  ++  ML +G +P 
Sbjct: 372 GLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPS 411



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L G++  RG  P+I T+  +I G     + + A+ L+ K+    L P ++T+  LI+
Sbjct: 326 AVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C EGR + A  +F  ML  G   +  TY+ +I  +    +++ A  ++++M +   SP
Sbjct: 386 QLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSP 445

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           N+             G    AM+L + M  NG+ PD    + L        G  EH
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS-GFSRGGKLEH 500



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L+ A+ +  ++  +G+EP + TY   +   C      EAV+L  K+      PN
Sbjct: 282 LCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFT LI    ++G+ + A  ++ KML  G     VTY+ LI+        ++AF +++
Sbjct: 342 IQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFK 401

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  +   P+            + G   +AM ++D ML+ G  P+ +  +TL
Sbjct: 402 WMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTL 453



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+  TY ++I G+C  + LD A  +F+++      PNS+T++ LI+  C EGR+++A  M
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDM 294

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M++KG +  V TY+  +     +     A ++  +M +    PNI            
Sbjct: 295 LEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSR 354

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G+   A+ LY  ML +G++P  +  + L +
Sbjct: 355 DGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 17/170 (10%)

Query: 1   MLIKECHLDAALKLFGQ-LTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           ++IK C  +  +K   Q L++   + D    + ++ T++      + +D A  ++ K+  
Sbjct: 136 LMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLN 195

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
             ++P+ +TF  +I+  CK+GR+ +A ++ S +       N  TY+ LI G+ ++ N+  
Sbjct: 196 SGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255

Query: 116 AFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           AF +++ M ++   PN              GR  EAM + + M++ GI P
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 25/141 (17%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
           G++  +GL P++ITY + I G C   R   A ++F ++      PN  T++ LI   C+E
Sbjct: 576 GKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQE 635

Query: 76  GRMDDATM--MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           GR +DA M  + +++   G + NV TY+ L+ G                +C         
Sbjct: 636 GRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKG----------------LCGE------- 672

Query: 134 GRPTEAMQLYDSMLRNGIMPD 154
           GR  EA QL  SM + G+ P 
Sbjct: 673 GRCYEADQLVVSMQKKGLQPS 693



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--VQLFEKLTCVQLKPNSITFTIL 68
           A K+F ++  R   P++ TY+++I G C   R ++A    L  +LT    +PN  T+T L
Sbjct: 606 AFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTL 665

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +   C EGR  +A  +   M +KG + +   Y  L+ G  K+  ++SA +++  M
Sbjct: 666 VKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSM 720



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 52/99 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  +GL+P    Y  ++ G C   +++ A+ +F  +  +  + +   +  LI 
Sbjct: 678 ADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALIC 737

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           A CKE  +++A  +F  MLEK   ++ V ++ L+DG  K
Sbjct: 738 ALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLK 776



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  +LT  G EP++ TY T++ G C   R  EA QL   +    L+P+   +  L+   C
Sbjct: 646 LLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGEC 705

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K  +++ A  +F  M   G + ++  Y  LI    K   ++ A  +++ M E + + +  
Sbjct: 706 KNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEV 765

Query: 134 GRPTEAMQLYDSMLRNG 150
                   L D +L+ G
Sbjct: 766 AWTV----LLDGLLKEG 778



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +LI EC    +++AL +F  +   G +  +  Y  +IC  C  N ++EA  +F+ +    
Sbjct: 700 LLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKH 759

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
              + + +T+L+D   KEG  D    +   M  +    N  TY  L
Sbjct: 760 WNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVML 805


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ A  LF Q+ + G  PDI+TYN++I G+  L  LDE + +FE++      P+
Sbjct: 265 LCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPD 324

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+ FCK  RM  A     +M   G K NVVTYS  ID + K   ++ A   + 
Sbjct: 325 VITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFV 384

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    ++PN             AG   EA++L + +L+ GI  + +  + L D
Sbjct: 385 DMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 438



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A+K F  +    L P+  TY ++I   C    L EA++L E++    +K N +
Sbjct: 372 KEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVV 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+D  C+EGRM +A  +F  ML  G   N  TY+ L+ G+ K++ M+ A D+ +EM
Sbjct: 432 TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 491

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  I P++              R  EA  L   +  +GI  + ++ +TL D   +S  +
Sbjct: 492 KEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA 551

Query: 172 QE 173
            E
Sbjct: 552 TE 553



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +   ++   GL+P+++TY+T I  +C    L EA++ F  +  V L PN  T+T LID
Sbjct: 344 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 403

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK G + +A  +  ++L+ G K NVVTY+ L+DG  +   MK A +V+  M    ++P
Sbjct: 404 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 463

Query: 131 N-----------IAGRPTE-AMQLYDSMLRNGIMPDGLLLSTL 161
           N           I  +  E A  +   M    I PD LL  T+
Sbjct: 464 NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTI 506



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IK   ++ A  +  ++ ++ ++PD++ Y TI+ G C+ +RL+EA  L  ++    +  N
Sbjct: 475 FIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTN 534

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +T L+DA+ K G+  +A  +  +ML+ G  A  VTY  LIDG  KS  ++ A   + 
Sbjct: 535 AVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFG 594

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M E  + PN+A                 A +L+D ML  G+MPD +  + L D N++  
Sbjct: 595 RMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHG 654

Query: 170 GSQE 173
             QE
Sbjct: 655 NLQE 658



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++ D GL    +TY  +I G C    + EA+  F +++ + L+PN   +T L+D
Sbjct: 554 ALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVD 613

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK    + A  +F +ML+KG   + + Y+ LIDG  K  N++ A ++ + M E  +  
Sbjct: 614 GLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMEL 673

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++            +G+  +A  L D M+  G++PD
Sbjct: 674 DLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPD 709



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D + K F  +   G++  + TYN +I   C    L+ A  LF ++      P+ +T+  L
Sbjct: 237 DLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSL 296

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID   K G +D+   +F +M +     +V+TY+ LI+ + K + M  AF+   EM  N +
Sbjct: 297 IDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGL 356

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN+             G   EA++ +  M R  + P+    ++L D N ++    E
Sbjct: 357 KPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAE 413



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+  FG++++ GL+P++  Y  ++ G C  N  + A +LF+++    + P+
Sbjct: 580 LCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPD 639

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T LID   K G + +A  +  +M+E G + ++  Y+ LI G   S  ++ A ++ +
Sbjct: 640 KIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLD 699

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIM 152
           EM    + P+              G+  EA++L + M + G++
Sbjct: 700 EMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 742



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI+   L+ A + F ++    + P   + N ++     + R D + + F+ +    +K +
Sbjct: 195 LIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRS 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+ID  CKEG ++ A  +F++M E G   ++VTY+ LIDG+ K   +     ++E
Sbjct: 255 VFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFE 314

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M + +  P++              R  +A +    M  NG+ P+ +  ST  D
Sbjct: 315 QMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFID 368



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A KLF ++ D+G+ PD I Y  +I G      L EA+ L +++  + ++ +   +T 
Sbjct: 621 FEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTA 680

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI      G++  A  +  +M+ KG   + V Y CLI  Y+    +  A ++  EM +  
Sbjct: 681 LIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 740

Query: 128 ISPNIAGRPTEAMQ 141
           +   ++     ++Q
Sbjct: 741 MITGLSDHAVPSVQ 754



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 50/109 (45%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P    ++ +      L  L+EA + F K+   ++ P   +   L+    K GR D +   
Sbjct: 183 PGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKF 242

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           F  M   G K +V TY+ +ID   K  +++ A  ++ +M E   +P+I 
Sbjct: 243 FKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIV 291


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   G+ PD+ TYN +I  Y  +  +D+A  LFE++     KP+ IT+  LI+   
Sbjct: 450 LFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLG 509

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K G +D+A ++F +M EKG   +V TYS LI+ + KS  +  A  +++EM      PNI 
Sbjct: 510 KNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIV 569

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  EA + Y++M + G+ PD +  S L
Sbjct: 570 TYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSIL 609



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 67/124 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  LF ++     +PD+ITYNT+I        LDEA  LF+++      P+  T++ 
Sbjct: 479 VDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYST 538

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ F K  ++D A  +F +M+ +G   N+VTY+ L+D   +      A   YE M +  
Sbjct: 539 LIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQG 598

Query: 128 ISPN 131
           ++P+
Sbjct: 599 LTPD 602



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   + ++G++ DI  YN +      L ++     LF+K+    + P+  T+ I+I 
Sbjct: 412 AIDLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMIS 471

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           ++ + G +D A+ +F +M     K +V+TY+ LI+   K+ ++  A  +++EM E    P
Sbjct: 472 SYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDP 531

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++            + +   A  L+D M+  G +P+ +  + L D
Sbjct: 532 DVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLD 576



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 58/102 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF ++ ++G +PD+ TY+T+I  +   N++D A  LF+++      PN
Sbjct: 508 LGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPN 567

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + G+  +A   +  M ++G   + +TYS L
Sbjct: 568 IVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSIL 609



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 64/129 (49%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   +    +++ ++  +G + DI  YN ++        +D+A Q+FE +      P++
Sbjct: 197 LRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDA 256

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+TILI    K G+       F +M+ +G   N++ Y+ +I+   K++ +     V  +
Sbjct: 257 YTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSK 316

Query: 123 MCENNISPN 131
           M E++  PN
Sbjct: 317 MIESDCQPN 325



 Score = 43.1 bits (100), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 21/158 (13%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L  F ++  RG   ++I YNT+I        +D+ + +  K+     +PN  T+++ +D 
Sbjct: 276 LSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDI 335

Query: 72  FCKEG---RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
              EG   R+++   +  + L K        YS L+    KS +   A +V+  M  ++ 
Sbjct: 336 LATEGQLHRLNEVLDICDRYLNKS------IYSYLVKSLCKSGHASEAHNVFCRMWNSHE 389

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           S +             +G+  EA+ L   M   GI  D
Sbjct: 390 SGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTD 427



 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 49/111 (44%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL  +  TY  I+  +     + +  +++E++     K +   + +L+DA  K G +D A
Sbjct: 181 GLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQA 240

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
             +F  M +K    +  TY+ LI    K+         ++EM     + N+
Sbjct: 241 YQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNL 291



 Score = 39.7 bits (91), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 46/104 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  +  +   PD  TY  +I       +  + +  F+++       N
Sbjct: 231 LAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I +  +I+A  K   +D    + SKM+E   + N  TYS  +D
Sbjct: 291 LIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLD 334



 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A  +F ++ +     D   + +++   C+  +  EA+ L   +    +  +
Sbjct: 368 LCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTD 427

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + ++  A  K  ++   + +F KM   G   ++ TY+ +I  Y +   +  A  ++E
Sbjct: 428 IGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFE 487

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  ++  P++             G   EA  L+  M   G  PD    STL
Sbjct: 488 EMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTL 539


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L+ ++  +G+ P++ TYNT+I G+C +  L EA  L  ++    + P+
Sbjct: 243 LCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPD 302

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILIDA  KEG++D+A  +F +M  K    N+VTY+ LIDG  K+ +++ A  + +
Sbjct: 303 VYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCK 362

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           +M E  I P++             GR   A Q +  +L  G
Sbjct: 363 KMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKG 403



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL    ++  +G + D ++Y T+I G C         +L  KL    +KP+ + +T 
Sbjct: 179 IKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTT 238

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CK  R+ DA  ++S+M+ KG   NV TY+ LI G+    N+K AF +  EM   N
Sbjct: 239 IIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKN 298

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+P++             G+  EA+ L++ M    + P+ +  ++L D
Sbjct: 299 INPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLID 346



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 23/160 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A+ LF ++  + + P+I+TY ++I G C  + L+ A+ L +K+    ++P+
Sbjct: 313 LGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPD 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++TIL+DA CK GR+++A   F  +L KG   NV TY+ +I+G               
Sbjct: 373 VYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMING--------------- 417

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +C+       AG   + M L   M   G MPD +   T+
Sbjct: 418 -LCK-------AGLFGDVMDLKSKMEGKGCMPDAITFKTI 449



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H    + LF Q    G+ P++ T N +I  +C L  +  A  +F  +      P+
Sbjct: 103 LVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPD 162

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT   LI   C  G +  A     K++ +G + + V+Y  LI+G  K+   K+   +  
Sbjct: 163 AITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLR 222

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++  +++ P++              R  +A  LY  M+  GI P+    +TL
Sbjct: 223 KLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTL 274



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+ L  ++ ++G++PD+ +Y  ++   C   RL+ A Q F+ L       N
Sbjct: 348 LCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLN 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ++I+  CK G   D   + SKM  KG   + +T+  +I   F+      A     
Sbjct: 408 VRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLR 467

Query: 122 EM 123
           EM
Sbjct: 468 EM 469



 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A + F  L  +G   ++ TYN +I G C      + + L  K+      P+
Sbjct: 383 LCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPD 442

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           +ITF  +I A  ++   D A     +M+ +G
Sbjct: 443 AITFKTIICALFEKDENDKAEKFLREMIARG 473



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 44/99 (44%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P    ++ I+            + LF++     + PN  T  ILI+ FC    +  A  +
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           F+ +L++G   + +T + LI G      +K A   ++++
Sbjct: 151 FANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKV 189


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 48/217 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITYNT+I G C   ++DEA +L   +  V +KP+ +
Sbjct: 493 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI+ +C+  RMDDA  +F +M+  G   N++TY+ ++ G F ++   +A ++Y   
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 612

Query: 121 ----------------EEMCENNISP---------------------NI-------AGRP 136
                             +C+NN++                      NI        GR 
Sbjct: 613 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRM 672

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            EA  L+ +   NG++PD    S +A+ NL   GS E
Sbjct: 673 DEAKDLFAAHSANGLVPDVRTYSLMAE-NLIEQGSLE 708



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 12/154 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  + I +N+II  +C   R+ E+ +LF+ +  + +KP+ IT+  L
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  C  G+MD+AT + + M+  G K ++VTY  LI+GY +   M  A  +++EM  + +
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNG 150
           SPNI              R   A +LY S+ ++G
Sbjct: 583 SPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITY-----------------------------------NTIIC 35
           A K+F  +T RGLEPDI TY                                   N +IC
Sbjct: 325 ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILIC 384

Query: 36  GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
            Y    ++D+A+ +F K+    L PN + +  +ID  CK G +DDA + F +M+++G   
Sbjct: 385 AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           N++ Y+ LI G         A ++  EM +  I  N              GR  E+ +L+
Sbjct: 445 NIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 504

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ PD +  +TL D
Sbjct: 505 DLMVRIGVKPDIITYNTLID 524



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE   D A   + ++ DRG+ PD++TY++II   C    +D+A+++   +    + P+
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++  +C  G+  +A     KM   G + NVVTYS L++   K+     A  +++
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P+IA            G   E   L D M+RNGI PD  + + L
Sbjct: 331 SMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 382



 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 13/182 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ PD +TYN+I+ GYCS  +  EA+   +K+    ++PN
Sbjct: 246 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPN 305

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ L++  CK GR  +A  +F  M ++G + ++ TY  L+ GY     +     + +
Sbjct: 306 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLD 365

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M  N I P     NI         +  +AM ++  M ++G+ P+ +   T+ D  L  S
Sbjct: 366 LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDV-LCKS 424

Query: 170 GS 171
           GS
Sbjct: 425 GS 426



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+ G  PD+ +YN ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 145 DAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +++ F KEG  D A   + +ML++G   +VVTYS +I    K+Q M  A +V   M +
Sbjct: 205 NTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK 264

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N + P+             +G+P EA+     M  +G+ P+ +  S+L +Y  ++  S E
Sbjct: 265 NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE 324



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 15/159 (9%)

Query: 11  ALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           AL+L   + D    G  PD+++YNT++ G+      D+A   + ++    + P+ +T++ 
Sbjct: 182 ALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSS 241

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I A CK   MD A  + + M++ G   + +TY+ ++ GY  S   K A    ++M  + 
Sbjct: 242 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG 301

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + PN+             GR TEA +++DSM + G+ PD
Sbjct: 302 VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++   GL P+++ Y T+I   C    +D+A+  FE++    L PN I
Sbjct: 388 KQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNII 447

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI   C   + D A  +  +ML++G   N + ++ +ID + K   +  +  +++ M
Sbjct: 448 VYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLM 507

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P+I            AG+  EA +L  SM+  G+ PD +   TL
Sbjct: 508 VRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 557



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL-FEKLTCVQLKPNSITF 65
            LD      G +  +G   D IT+  ++ G C+  R  +A+ +   ++T +   P+  ++
Sbjct: 107 RLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSY 166

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             L+   C E R  +A  +   M +    G   +VV+Y+ +++G+FK  +   A+  Y E
Sbjct: 167 NNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHE 226

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           M +  I P++    +            +AM++ ++M++NG+MPD
Sbjct: 227 MLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T  G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 604 AAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 663

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GRMD+A  +F+     G   +V TYS + +   +  +++   D++  M EN  S
Sbjct: 664 GALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCS 723

Query: 130 PN 131
            +
Sbjct: 724 AD 725



 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 45/88 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I       R+DEA  LF   +   L P+  T++++
Sbjct: 638 DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLM 697

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  A+
Sbjct: 698 AENLIEQGSLEELDDLFLSMEENGCSAD 725



 Score = 38.9 bits (89), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFTI 67
           A  +F +L  RG    I   N  +    + +    AV  + ++      ++ P   T+ I
Sbjct: 39  ARHVFDELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGAGKVTPTVHTYAI 97

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C+ GR+D        +++KG + + +T++ L+ G    +    A D V   M E 
Sbjct: 98  LIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 157

Query: 127 NISPNI 132
              P++
Sbjct: 158 GCIPDV 163


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+ L  ++  +G   D++TYNTI+ G C    L EA +LF ++T   L P+S T TI
Sbjct: 416 ISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G + +A  +F KM EK  K +VVTY+ L+DG+ K  ++ +A +++ +M    
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 535

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I P               G  +EA +++D M+   I P  ++ +++
Sbjct: 536 ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSM 581



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KLF ++T+RGL PD  T   +I G+C L  L  A++LF+K+   ++K +
Sbjct: 445 LCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLD 504

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D F K G +D A  +++ M+ K      +++S L++      ++  AF V++
Sbjct: 505 VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWD 564

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   +I P +            +G  ++     + M+  G +PD +  +TL
Sbjct: 565 EMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTL 616



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCK 74
           ++   G  PD I+YNT+I G+     + +A  L +K+   Q  L P+  T+  ++  FC+
Sbjct: 600 KMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCR 659

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           E +M +A  +  KM+E+G   +  TY+ LI+G+    N+  AF  ++EM +   SP+
Sbjct: 660 ENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 14/162 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A +++ ++  + ++P ++  N++I GYC      +     EK+      P+ I++ 
Sbjct: 555 HLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYN 614

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            LI  F KE  M  A  +  KM EK  G   +V TY+ ++ G+ +   MK A  V  +M 
Sbjct: 615 TLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMI 674

Query: 125 ENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           E  ++P+       I G       TEA + +D ML+ G  PD
Sbjct: 675 ERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++       ++ ++G+ PDI+TYNT+I  Y S   ++EA +L   +      P 
Sbjct: 235 LCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPG 294

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+  CK G+ + A  +F++ML  G   +  TY  L+    K  +     +++ 
Sbjct: 295 VYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFS 354

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M   ++ P++            +G   +A+  ++S+   G++PD ++ + L
Sbjct: 355 DMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTIL 406



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++   L  A + F  L  +G    I   N +I     +  ++ A +++++++   +  N
Sbjct: 165 FVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVN 224

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T  I+++A CK+G+M+      S++ EKG   ++VTY+ LI  Y     M+ AF++  
Sbjct: 225 VYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMH 284

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP +             G+   A +++  MLR+G+ PD     +L
Sbjct: 285 AMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 336



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 91/178 (51%), Gaps = 15/178 (8%)

Query: 1   MLIKECHLDAALK---LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +L++ C    A++   +F  +  R + PD++ +++++  +     LD+A+  F  +    
Sbjct: 336 LLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 395

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P+++ +TILI  +C++G + +A  + ++ML++G   +VVTY+ ++ G  K + +  A 
Sbjct: 396 LIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 455

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++ EM E  + P+              G    AM+L+  M    I  D +  +TL D
Sbjct: 456 KLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLD 513



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 91/197 (46%), Gaps = 49/197 (24%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A++LF ++ ++ ++ D++TYNT++ G+  +  +D A +++  +   ++ P  I+F+
Sbjct: 485 NLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFS 544

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANV----------------------------- 97
           IL++A C +G + +A  ++ +M+ K  K  V                             
Sbjct: 545 ILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISE 604

Query: 98  ------VTYSCLIDGYFKSQNMKSAFDVYEEMCENN--ISPNI------------AGRPT 137
                 ++Y+ LI G+ K +NM  AF + ++M E    + P++              +  
Sbjct: 605 GFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMK 664

Query: 138 EAMQLYDSMLRNGIMPD 154
           EA  +   M+  G+ PD
Sbjct: 665 EAEAVLRKMIERGVNPD 681



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A ++F ++   GL PD  TY +++   C      E   +F  +    + P+
Sbjct: 305 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPD 364

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++  F + G +D A M F+ + E G   + V Y+ LI GY +   +  A ++  
Sbjct: 365 LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRN 424

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +   + ++    T            EA +L++ M   G+ PD   L+ L D
Sbjct: 425 EMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILID 478



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   ++ A +++ +++  G+  ++ T N ++   C   ++++      ++    + P+
Sbjct: 200 LVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPD 259

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI A+  +G M++A  +   M  KG    V TY+ +I+G  K    + A +V+ 
Sbjct: 260 IVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFA 319

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  + +SP+              G   E   ++  M    ++PD +  S++
Sbjct: 320 EMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSM 371


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL L  ++ D G+ P++  YN +I   C   +  EA  LF+++  + L+PN
Sbjct: 342 LRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPN 401

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ILID FC+ G++D A     +M++ G K +V  Y+ LI+G+ K  ++ +A     
Sbjct: 402 DVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMA 461

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P +             G+  +A++LY  M   GI P     +TL
Sbjct: 462 EMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTL 513



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 84/151 (55%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + AA     ++ ++ LEP ++TY +++ GYCS  ++++A++L+ ++T   + P+  TFT 
Sbjct: 453 ISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTT 512

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+    + G + DA  +F++M E   K N VTY+ +I+GY +  +M  AF+  +EM E  
Sbjct: 513 LLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG 572

Query: 128 ISPN------------IAGRPTEAMQLYDSM 146
           I P+            + G+ +EA    D +
Sbjct: 573 IVPDTYSYRPLIHGLCLTGQASEAKVFVDGL 603



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  +   LD AL   G++ D GL+  +  YN++I G+C    +  A     ++   +L+P
Sbjct: 411 MFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEP 470

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             +T+T L+  +C +G+++ A  ++ +M  KG   ++ T++ L+ G F++  ++ A  ++
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            EM E N+ PN              G  ++A +    M   GI+PD
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A +   ++T++G+ PD  +Y  +I G C   +  EA    + L     + N I
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T L+  FC+EG++++A  +  +M+++G   ++V Y  LIDG  K ++ K  F + +EM
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM 673

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            +  + P+              G   EA  ++D M+  G +P+
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPN 716



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL+L+ ++T +G+ P I T+ T++ G      + +AV+LF ++    +KPN +T+ +
Sbjct: 488 INKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNV 547

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+ +C+EG M  A     +M EKG   +  +Y  LI G   +     A    + + + N
Sbjct: 548 MIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGN 607

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
              N              G+  EA+ +   M++ G+  D +    L D +L+
Sbjct: 608 CELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLK 659



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 47/191 (24%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI------- 63
           A  ++  + + G  P+ +TY  +I G C    ++EA  L  K+  V   PN +       
Sbjct: 701 AFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLD 760

Query: 64  ----------------------------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                                       T+ +LI  FC++GR+++A+ + ++M+  G   
Sbjct: 761 ILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSP 820

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLY 143
           + +TY+ +I+   +  ++K A +++  M E  I P+            +AG   +A +L 
Sbjct: 821 DCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELR 880

Query: 144 DSMLRNGIMPD 154
           + MLR G++P+
Sbjct: 881 NEMLRQGLIPN 891



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   A++LF  +   G+ PD+  Y  +I   C L  L  A ++   +       N
Sbjct: 202 LVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVN 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LID  CK+ ++ +A  +   +  K  K +VVTY  L+ G  K Q  +   ++ +
Sbjct: 262 IVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMD 321

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM     SP+ A            G+  EA+ L   ++  G+ P+  + + L D
Sbjct: 322 EMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALID 375



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++ DRGL+PD + Y ++I          EA  +++ +      PN +T+T +I+  C
Sbjct: 669 LLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLC 728

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMCE----NNI 128
           K G +++A ++ SKM       N VTY C +D   K + +M+ A +++  + +    N  
Sbjct: 729 KAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTA 788

Query: 129 SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + N+        GR  EA +L   M+ +G+ PD +  +T+ +
Sbjct: 789 TYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMIN 830



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A+ +   L  + L+PD++TY T++ G C +   +  +++ +++ C++  P+
Sbjct: 272 LCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPS 331

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               + L++   K G++++A  +  ++++ G   N+  Y+ LID   K +    A  +++
Sbjct: 332 EAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFD 391

Query: 122 EMCENNISPN 131
            M +  + PN
Sbjct: 392 RMGKIGLRPN 401



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 60/126 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD  L     +T   L P++ T + ++ G         A++LF  +  V ++P+   +T 
Sbjct: 173 LDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTG 232

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I + C+   +  A  M + M   G   N+V Y+ LIDG  K Q +  A  + +++   +
Sbjct: 233 VIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKD 292

Query: 128 ISPNIA 133
           + P++ 
Sbjct: 293 LKPDVV 298



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  ++ A +L  ++   G+ PD ITY T+I   C  N + +A++L+  +T   ++P+ +
Sbjct: 799 RQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRV 858

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            +  LI   C  G M  AT + ++ML +G
Sbjct: 859 AYNTLIHGCCVAGEMGKATELRNEMLRQG 887



 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           A++L+  +T++G+ PD + YNT+I G C    + +A +L  ++    L PN+ T
Sbjct: 841 AIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++   +   G+E D+ TYNT+ CG    NR+DEA  L   +    ++PN +++T 
Sbjct: 334 VDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTT 393

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------------ 115
           LI   C EG M +A  +F +M   G + ++VTY+ ++DGY K  +++             
Sbjct: 394 LISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKG 453

Query: 116 -----------------------AFDVYEEMCENNISPNIA------------GRPTEAM 140
                                  A  ++EEM +    PN+             GR  EA 
Sbjct: 454 LVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAF 513

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           QLYD+ML +G+ PD  L S L
Sbjct: 514 QLYDNMLGDGLTPDDALYSAL 534



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++  + L  D+  Y+++I  YC    +  A ++F++     ++PN  T+  LI+ FC
Sbjct: 235 VFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFC 294

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G+M+ A M+ + M  +G   N + ++ +IDGY +   +  A ++   M +  I  ++ 
Sbjct: 295 KIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVY 354

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      A R  EA  L   M+  G+ P+ +  +TL
Sbjct: 355 TYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTL 394



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK+  +  A +   ++  +GL PDI +Y  ++ G+C   ++D A++LFE++     KPN 
Sbjct: 434 IKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNL 493

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF--KSQNMK 114
           + +T LI    KEGR ++A  ++  ML  G   +   YS L+      K QN+K
Sbjct: 494 VAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQNVK 547



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIIT---YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           HLD A  L  Q       PD +T    + ++ GYC   R+  A QL +++    +K N++
Sbjct: 122 HLDTAADLLKQAATSC--PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNAL 179

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  L+DA+ +E   D    M   M  +G +  V TY+ L+DG   ++++     V+EEM
Sbjct: 180 CYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEM 239

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              N+S ++            AG    A +++D  + NGI P+
Sbjct: 240 KSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPN 282



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F +    G+EP+  TY  +I G+C + +++ A  L   +    +  N I F  +ID
Sbjct: 267 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 326

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++  +D A  +   M + G + +V TY+ L  G  ++  M  A ++   M E  + P
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 386

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           N              G   EA +L+  M  NG  P      +L  YN+   G
Sbjct: 387 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEP------SLVTYNVMMDG 432



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 59/113 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E   D   ++   + + G+EP + TY  ++ G  +   + +   +FE++    L  +  
Sbjct: 190 REKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVY 249

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            ++ +I+A+C+ G +  A+ +F + +  G + N  TY  LI+G+ K   M++A
Sbjct: 250 FYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAA 302


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++   +   G+E D+ TYNT+ CG    NR+DEA  L   +    ++PN +++T 
Sbjct: 334 VDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTT 393

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------------ 115
           LI   C EG M +A  +F +M   G + ++VTY+ ++DGY K  +++             
Sbjct: 394 LISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKG 453

Query: 116 -----------------------AFDVYEEMCENNISPNIA------------GRPTEAM 140
                                  A  ++EEM +    PN+             GR  EA 
Sbjct: 454 LVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAF 513

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           QLYD+ML +G+ PD  L S L
Sbjct: 514 QLYDNMLGDGLTPDDALYSAL 534



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++  + L  D+  Y+++I  YC    +  A ++F++     ++PN  T+  LI+ FC
Sbjct: 235 VFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFC 294

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G+M+ A M+ + M  +G   N + ++ +IDGY +   +  A ++   M +  I  ++ 
Sbjct: 295 KIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVY 354

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      A R  EA  L   M+  G+ P+ +  +TL
Sbjct: 355 TYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTL 394



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK+  +  A +   ++  +GL PDI +Y  ++ G+C   ++D A++LFE++     KPN 
Sbjct: 434 IKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNL 493

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF--KSQNMK 114
           + +T LI    KEGR ++A  ++  ML  G   +   YS L+      K QN+K
Sbjct: 494 VAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQNVK 547



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIIT---YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           HLD A  L  Q       PD +T    + ++ GYC   R+  A QL +++    +K N++
Sbjct: 122 HLDTAADLLKQAATSC--PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNAL 179

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  L+DA+ +E   D    M   M  +G +  V TY+ L+DG   ++++     V+EEM
Sbjct: 180 CYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEM 239

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              N+S ++            AG    A +++D  + NGI P+
Sbjct: 240 KSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPN 282



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F +    G+EP+  TY  +I G+C + +++ A  L   +    +  N I F  +ID
Sbjct: 267 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 326

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++  +D A  +   M + G + +V TY+ L  G  ++  M  A ++   M E  + P
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 386

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           N              G   EA +L+  M  NG  P      +L  YN+   G
Sbjct: 387 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEP------SLVTYNVMMDG 432



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 57/108 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   ++   + + G+EP + TY  ++ G  +   + +   +FE++    L  +   ++ +
Sbjct: 195 DRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSV 254

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           I+A+C+ G +  A+ +F + +  G + N  TY  LI+G+ K   M++A
Sbjct: 255 INAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAA 302


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 96/175 (54%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +G  P++ +YNT+I GYC + R+D+A+ LFE++   +L PN++T+  
Sbjct: 335 MDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNT 394

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+ DA  +F +M+  G   ++VTY  L+D   K+ ++  A  + + +  +N
Sbjct: 395 LIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSN 454

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + P+I            AG   +A  L+ ++   G+ P+      +  YN+ + G
Sbjct: 455 LDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPN------VWTYNIMTHG 503



 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 47/210 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A  LF ++  +G+ P+I+T N+++   C+L        L  ++   ++ PN
Sbjct: 224 LCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPN 283

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
           +I+ T ++DA CKEG                                    MD+A  +F 
Sbjct: 284 AISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFD 343

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ KG   NV +Y+ LI+GY K + M  A  ++EEMC   + PN              G
Sbjct: 344 MMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVG 403

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           R  +A+ L+  M+  G +PD +    L DY
Sbjct: 404 RLQDAIALFREMVACGQIPDLVTYRILLDY 433



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K CHLD A+ L   +    L+PDI  Y  +I G C    L++A  LF  L+   LKPN
Sbjct: 434 LCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPN 493

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+    CK G +D+AT +F +M E    A+  TY+ +  G+ ++     A  + E
Sbjct: 494 VWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLE 553

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 554 EMLARGFSCDVS 565



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  +  ++   G +PD  ++ T+I G C   ++ EA+ LF+K+     +P+ 
Sbjct: 120 CHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDV 179

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + +  LI+  CK G    A  +   M +   + +VV Y  LI    K +    AF+++ E
Sbjct: 180 VIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSE 239

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISPNI             G       L + M+ + IMP+ + L+T+ D
Sbjct: 240 MITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 13/177 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
             L L  ++   G+  ++ T N +I  +C LNR++ A  +  K+  +  +P++ +FT LI
Sbjct: 92  TVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLI 151

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C EG++ +A  +F KM+ +G + +VV Y+ LI+G  K+ +  +A  +   M + N  
Sbjct: 152 KGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQ 211

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           P++              + T+A  L+  M+  GI P+ +  ++L  Y L + G  +H
Sbjct: 212 PDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLV-YALCNLGEWKH 267



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++   G +PD++ Y T+I G C       A++L   +     +P+ + 
Sbjct: 157 EGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVV 216

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI + CK+ +   A  +FS+M+ KG   N+VT + L+         K    +  EM 
Sbjct: 217 YGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMV 276

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ I PN              G   +A  + D M ++G+ PD +  + L D
Sbjct: 277 DSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALID 327



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 51/217 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQ--------- 57
           +D A+ LF ++  + L P+ +TYNT+I G C + RL +A+ LF E + C Q         
Sbjct: 370 MDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRI 429

Query: 58  -------------------------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                                    L P+   +TI+ID  C+ G ++DA  +FS +  KG
Sbjct: 430 LLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKG 489

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAM 140
            K NV TY+ +  G  K   +  A  ++ EM EN  S +                 + A+
Sbjct: 490 LKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAI 549

Query: 141 QLYDSMLRNGIMPD----GLLLSTLADYNLQSSGSQE 173
           QL + ML  G   D     LL+  L+D  L  S + +
Sbjct: 550 QLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQSEAHK 586



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A KLF ++ +     D  TYNTI  G+   N    A+QL E++       +
Sbjct: 504 LCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCD 563

Query: 62  SITFTILIDAFCKEG 76
             T T+L+     +G
Sbjct: 564 VSTTTLLVGMLSDDG 578


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 103/186 (55%), Gaps = 13/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  +D+AL  + ++ + G+ PD+ITY ++I G C  N++  A+++   +    +K +
Sbjct: 579 FFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLD 638

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LID FCK   M+ A+  F+++L+ G   N V Y+ +I G+    NM++A ++++
Sbjct: 639 VVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQ 698

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM +N +  ++             G+ + A+ LY  ML   I+PD ++ + L +  L ++
Sbjct: 699 EMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLIN-GLSNN 757

Query: 170 GSQEHC 175
           G  E+ 
Sbjct: 758 GQLENA 763



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 13/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  LF +  + G+  +++TYN ++     L +++EA  L+EK+    + P+ +++  
Sbjct: 411 LEHAYGLFDEAVEHGI-TNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNN 469

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK+G MD A  M   +LE+G K N VTY+ LIDG+FK  + + AF V+E+M   N
Sbjct: 470 LILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAAN 529

Query: 128 ISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+P               GR +E     ++ ++ G +   +  +++ D
Sbjct: 530 IAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIID 577



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A K F +L D GL P+ + YN++I G+  LN ++ A+ L +++   ++  +   +T 
Sbjct: 655 MESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTS 714

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I    KEG++  A  ++S+ML K    ++V Y+ LI+G   +  +++A  + +EM  NN
Sbjct: 715 IIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNN 774

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           I+P++             G   EA +L+D ML  G++PD      L +  L+ S
Sbjct: 775 ITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGKLKVS 828



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 47/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L+ ++  +G+ P +++YN +I G+C    +D+A  + + +    LKPN++T+T+
Sbjct: 445 VNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTL 504

Query: 68  LIDAFCKEGRMDDATMMFSKML-----------------------------------EKG 92
           LID F K+G  + A ++F +M+                                   ++G
Sbjct: 505 LIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQG 564

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
             +  +TY+ +IDG+FK   + SA   Y EMCE+ ISP++            + +   A+
Sbjct: 565 FVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLAL 624

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
           +++  M   G+  D +  S L D
Sbjct: 625 EMHSDMKYKGMKLDVVAYSALID 647



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 92/174 (52%), Gaps = 17/174 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+ +   AL+L  ++   GL  ++I   +++ GYC L  ++ A+QLF+++    + P+ 
Sbjct: 301 VKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDV 360

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + F++LI+   K G M+ A  ++++M   G + NV   + L++G+ +   ++ A+ +++E
Sbjct: 361 VIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDE 420

Query: 123 MCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
             E+ I+  +            G+  EA  L++ M+  GI P      +L  YN
Sbjct: 421 AVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITP------SLVSYN 468



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 12/143 (8%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G     ITYN+II G+     +D A+  + ++    + P+ IT+T LID  CK  ++  
Sbjct: 563 QGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGL 622

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IA 133
           A  M S M  KG K +VV YS LIDG+ K  +M+SA   + E+ +  ++PN       I+
Sbjct: 623 ALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMIS 682

Query: 134 G-----RPTEAMQLYDSMLRNGI 151
           G         A+ L+  M++N +
Sbjct: 683 GFIHLNNMEAALNLHQEMIKNKV 705



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE   +   K F +   RGLE D   Y+ ++   C    L+ A +L +++      P+ 
Sbjct: 231 MKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSK 290

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+T +I A  K+G   +A  +  +M+  G   NV+    L+ GY    ++  A  +++E
Sbjct: 291 GTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDE 350

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + E  + P++             G   +A +LY  M   GI P+  ++++L +
Sbjct: 351 VVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLE 403



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 60/108 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  L  AL L+ ++  + + PDI+ Y  +I G  +  +L+ A ++ +++    + P+
Sbjct: 719 LLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPS 778

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            + + ILI    +EG + +A  +  +ML+KG   +  TY  L++G  K
Sbjct: 779 VLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGKLK 826



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+ ++ +RG+  D  T + ++       + +E  + F++     L+ ++  ++IL+ 
Sbjct: 204 ARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQ 263

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C+   ++ A  +  +M E G   +  TY+ +I    K  N   A  + +EM    +  
Sbjct: 264 AVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPM 323

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G    A+QL+D ++  G++PD ++ S L +
Sbjct: 324 NVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLIN 368



 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ F  + +  L P +   N ++      N + +A QL++++    +  +  T  +++ 
Sbjct: 169 AVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMR 228

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  KEG+ ++    F +   +G + +   YS L+    +  ++  A ++ +EM E    P
Sbjct: 229 ACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVP 288

Query: 131 NIA------------GRPTEAMQLYDSMLRNGI 151
           +              G   EA++L D M+  G+
Sbjct: 289 SKGTYTAVIVACVKQGNFVEALRLKDEMVSVGL 321


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+ +  Q+ + G++PD++ Y TII   C    +D A+ LF ++    ++P+ + +T
Sbjct: 156 RIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYT 215

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L++  C  GR  DA ++   M+++  K +V+T++ LID + K   +  A ++Y EM + 
Sbjct: 216 SLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQM 275

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I+PNI             GR  EA Q++  M   G  PD +  ++L +
Sbjct: 276 SIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLIN 324



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+D AL LF Q+ + G+ PD++ Y +++ G C+  R  +A  L   +   ++KP+
Sbjct: 186 LCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPD 245

Query: 62  SITFTILIDAFCK-----------------------------------EGRMDDATMMFS 86
            ITF  LIDAF K                                   EGR+D+A  MF 
Sbjct: 246 VITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFY 305

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAG 134
            M  KG   +VV Y+ LI+G+ K + ++ A  ++ EM +  ++ N            + G
Sbjct: 306 LMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVG 365

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           +P  A +++  M+  G+ P+
Sbjct: 366 KPNVAQEVFGHMVSRGVPPN 385



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A    G+L   G EPDI T+ ++I G+C  NR++EA+ +  ++  + +KP+ + +T +ID
Sbjct: 125 ASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIID 184

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK G +D+A  +F++M   G + +VV Y+ L++G   S   + A  +   M +  I P
Sbjct: 185 SLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKP 244

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G+  +A +LY+ M++  I P+    ++L +
Sbjct: 245 DVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLIN 289



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A +L+ ++    + P+I TY ++I G C   RLDEA Q+F  +      P+
Sbjct: 256 FVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPD 315

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI+ FCK  +++DA  +F +M +KG   N +TY+ LI G+        A +V+ 
Sbjct: 316 VVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFG 375

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLR---NGIMPD 154
            M    + PNI             G+  +A+ +++ M +   +G+ P+
Sbjct: 376 HMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPN 423



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 3/131 (2%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  LD A ++F  +  +G  PD++ Y ++I G+C   ++++A+++F +++   L  N+IT
Sbjct: 294 EGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTIT 353

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T LI  F   G+ + A  +F  M+ +G   N+ TY+ L+     +  +  A  ++E+M 
Sbjct: 354 YTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQ 413

Query: 125 ENNIS---PNI 132
           +  I    PNI
Sbjct: 414 KREIDGVPPNI 424



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L   L   G+  D+ T N ++  +C  ++   A     KL  +  +P+  TFT 
Sbjct: 87  FDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTS 146

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC   R+++A  M ++M+E G K +VV Y+ +ID   K+ ++ +A  ++ +M    
Sbjct: 147 LINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYG 206

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I P++            +GR  +A  L   M++  I PD +  + L D
Sbjct: 207 IRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALID 254



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 8   LDAALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           ++ AL +F  +  R   G+ P+I TYN ++ G C   +L++A+ +F  +    +    IT
Sbjct: 402 VNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIIT 461

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +TI+I   CK G++ DA  +F  +  KG K NVVTY+ +I G F+   M  A  ++ +M 
Sbjct: 462 YTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMK 521

Query: 125 ENNIS 129
           E+ +S
Sbjct: 522 EDGVS 526



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             + AL LF  + +    P II +  ++     + + D  + L + L  + +  +  T  
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCN 110

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L++ FC+  +   A+    K+++ G + ++ T++ LI+G+     ++ A  +  +M E 
Sbjct: 111 LLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEM 170

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P++             G    A+ L++ M   GI PD ++ ++L +
Sbjct: 171 GIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVN 219


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A  +F Q+ D G++P+I TYN +I GY S+ +  E V++ E+++    KPN  T+  
Sbjct: 254 FDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGS 313

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CK GR  +A   F  M+ KG K +V TY  ++ GY     +    D+   M  N 
Sbjct: 314 LLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANG 373

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ISPN              G   +AM +++ M + G+ PD +    L D
Sbjct: 374 ISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALID 421



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 73/131 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +    +L   +   G+ PD+I+YNT+I G+C    +DEA +L E +  V LKP+
Sbjct: 493 LCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPD 552

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S ++  L+  +CK GR+D A   F KML  G    VVTY+ ++ G F+++    A ++Y 
Sbjct: 553 SFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYL 612

Query: 122 EMCENNISPNI 132
            M  +    +I
Sbjct: 613 NMINSGTKWDI 623



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 85/154 (55%), Gaps = 12/154 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF ++ + G+ P+I+ +NTI+C  C   R+ E  +L + + C+ ++P+ I++  LID  
Sbjct: 469 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 528

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C  G +D+A+ +   M+  G K +  +Y+ L+ GY K+  + SA+  + +M  N I+P +
Sbjct: 529 CLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGV 588

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPD 154
                         R +EA +LY +M+ +G   D
Sbjct: 589 VTYNTILHGLFQTKRFSEAKELYLNMINSGTKWD 622



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGL---EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           L  E   + AL+L   + D  +    P++++Y+T+I G+ +  ++D+   LF ++    +
Sbjct: 175 LCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGI 234

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            P+ +T+T +ID  CK    D A  +F +M++ G K N+ TY+CLI GY      K    
Sbjct: 235 PPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVR 294

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           + EEM      PN              GR  EA   +DSM+  GI P
Sbjct: 295 MLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKP 341



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KL   +   GL+PD  +YNT++ GYC   R+D A   F K+    + P  +T+  
Sbjct: 534 IDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNT 593

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    +  R  +A  ++  M+  G K ++ TY+ +++G  KS  +  A  +++ +C   
Sbjct: 594 ILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKG 653

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +  NI             GR  +AM L+ ++  NG++ + ++   L   NL   GS E
Sbjct: 654 LQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQN-VVTYRLVVENLIEEGSLE 710



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 15/166 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL---KPNSITFTILID 70
           L  ++ + G  PD ++YN ++ G C+  R +EA++L   +   Q+    PN ++++ +I+
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F  EG++D    +F +M+++G   +VVTY+ +IDG  K+Q    A  V+++M +N + P
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           NI             G+  E +++ + M   G  P+     +L +Y
Sbjct: 272 NIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNY 317



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   +   G+ P+   +N     Y     +D+A+ +F K+    L P+++++  LIDA C
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALC 424

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K GR+DDA + F++M+ +G   ++V +S L+ G       +   +++ EM    I PNI 
Sbjct: 425 KLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIV 484

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       GR  E  +L DS+   G+ PD +  +TL D
Sbjct: 485 FFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLID 526



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 13/179 (7%)

Query: 2   LIKECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           LIK+   +D A  LF ++  +GL PD++TYNTI+ G     R  EA +L+  +   + + 
Sbjct: 800 LIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM 859

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  T+ I+++  CK   +D+A  MF  +  KG + N++T++ +I    K    + A D++
Sbjct: 860 NIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLF 919

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             +  N + P++             G   E   L+ +M ++G   D  LL+ L    LQ
Sbjct: 920 AAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQ 978



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D+A   F ++   G+ P ++TYNTI+ G     R  EA +L+  +     K +  
Sbjct: 565 KAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIY 624

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I+++  CK   +D+A  MF  +  KG + N++T++ +I    K    + A D++  +
Sbjct: 625 TYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 684

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             N +  N+             G   E   L+ +M +NG  P+  +L+ L 
Sbjct: 685 PANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 735



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA +K F Q+ + G+ PDI+ +++++ G C++++ ++  +LF ++  V + PN + F  +
Sbjct: 431 DAEVK-FNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTI 489

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   CKEGR+ +   +   +   G + +V++Y+ LIDG+  +  +  A  + E M    +
Sbjct: 490 LCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGL 549

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P+             AGR   A   +  ML NGI P  +  +T+
Sbjct: 550 KPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTI 594



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 71/130 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +      A +L+  + + G + DI TYN I+ G C  N +DEA+++F+ L    L+ N
Sbjct: 598 LFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLN 657

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF I+I A  K GR +DA  +F+ +   G   NVVTY  +++   +  +++    ++ 
Sbjct: 658 IITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFS 717

Query: 122 EMCENNISPN 131
            M +N  +PN
Sbjct: 718 AMEKNGTAPN 727



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 16/164 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKPNSITF 65
           HL+     FG +   G   D I  N ++ G C   R+ EA+  L +++  +   P+++++
Sbjct: 109 HLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSY 168

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKA---NVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            IL+   C E R ++A  +   M +    +   NVV+YS +I+G+F    +   ++++ E
Sbjct: 169 NILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLE 228

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           M +  I P++    T             A  ++  M+ NG+ P+
Sbjct: 229 MMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPN 272



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 61/122 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  L  +GL+ +IIT+N +I       R ++A+ LF  +    L  N +T+ +
Sbjct: 639 VDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRL 698

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++   +EG +++   +FS M + G   N    + L+       ++  A     ++ E N
Sbjct: 699 VVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERN 758

Query: 128 IS 129
            S
Sbjct: 759 FS 760



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 60/122 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F  L  +GL+ +IIT+N +I       R ++A+ LF  +    L P+ +T+ +
Sbjct: 877 VDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRL 936

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +   +EG +++   +F  M + G   +    + L+    +  ++  A     ++ E N
Sbjct: 937 VAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKN 996

Query: 128 IS 129
            S
Sbjct: 997 FS 998



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A+ LF  +   GL  +++TY  ++        L+E   LF  +      PN
Sbjct: 668 LLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPN 727

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ---NMKSAFD 118
           S     L+      G +  A    SK+ E+       T S LI  +   +   + KS   
Sbjct: 728 SQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPK 787

Query: 119 VYEEMCENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            Y  + E N S  I  A R  +A  L+  ML  G+ PD +  +T+
Sbjct: 788 KYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTI 832



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYC-------SLNRLDEAVQLFEKLT---CVQ 57
           L  ALKLF +L        ++ +N ++           + +  +  V LF ++     ++
Sbjct: 30  LGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIK 89

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + PN  T++ILI  FC+ G ++     F  +L+ G + + +  + L++G    + +  A 
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAM 149

Query: 118 DV 119
           DV
Sbjct: 150 DV 151


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A+ L  ++ +R L P +ITYN++I G C +N L+ A +L   +    L P+
Sbjct: 414 LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPD 473

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++ ID  CKEGR+++A  +F  +  KG KAN V Y+ LIDGY K   +  A+ + E
Sbjct: 474 QWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLE 533

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
            M  +   PN       I G     +  EA  L   ML  G+ P
Sbjct: 534 RMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP 577



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A K+  +++++GL P ++TYN +I GYC    +D+A ++ + +      PN
Sbjct: 344 LCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPN 403

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI   CK+ ++  A  + +KMLE+    +++TY+ LI G  K  +++SA+ +  
Sbjct: 404 TRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLS 463

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M EN + P+              GR  EA  L+DS+   G+  + ++ + L D
Sbjct: 464 LMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALID 517



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ ALKLF  +T+    P + TY  +I       R  EA+ LF ++     +PN  T+T+
Sbjct: 280 INEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CKE +MD+A  M S+M EKG   +VVTY+ LIDGY K   +  AF++ + M  N+
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             PN       I G     +  +AM L + ML   + P  +  ++L
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A  LF  +  +G++ + + Y  +I GYC + ++D A  L E++      PN
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T+ +LI+  CKE +M +A+ + +KML  G K  VVTY+ LI    K      A  V+ 
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P++             G   E   +   M   GI+PD +  + L D
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLID 657



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D    ++ +L +  + P+I T+N ++ GYC +  + EA     K+    L P++ T+T 
Sbjct: 175 IDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTS 234

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+   +D+A  +F  M +KG + N V+Y+ LI G  ++  +  A  ++ +M E+N
Sbjct: 235 LILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDN 294

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P +            +GR  EA+ L++ M   G  P+    + L D
Sbjct: 295 CCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLID 342



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++F  +  +G + + ++Y  +I G C   R++EA++LF  +T     P   T+T+
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A    GR  +A  +F++M EKG + NV TY+ LIDG  K   M  A  +  EM E  
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           + P++         L D   + G++ D   +  L + N
Sbjct: 365 LIPSVVTYNA----LIDGYCKEGMIDDAFEILDLMESN 398



 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 68/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  L  ++   G++P ++TY  +I         D A+++F  +  +  +P+
Sbjct: 554 LCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPD 613

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T  + A+  +G +++   + +KM E+G   ++VTY+ LIDGY +      AFD  +
Sbjct: 614 VCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLK 673

Query: 122 EMCENNISPNI 132
            M +    P++
Sbjct: 674 CMVDTGCKPSL 684



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 16/177 (9%)

Query: 11  ALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            L++F ++   G    +P +  YNTI+        +DE   ++ +L   Q+ PN  TF  
Sbjct: 140 VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY----EEM 123
           +++ +CK G + +A +  SK+++ G   +  TY+ LI G+ +++ + +A++V+    ++ 
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 124 CENN-IS-PNI------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           C+ N +S  N+      AGR  EA++L+  M  +   P  +   T+  Y L  SG +
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPT-VRTYTVLIYALSGSGRK 315



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 41/181 (22%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +  ++ + G+ PD++TY  +I GY  L     A    + +     KP+    +ILI    
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695

Query: 74  KEGRMDD-----------------------------ATMMFSKMLEKGPKANVVTYSCLI 104
            E RM +                             A  +F KM+E G   +V  Y  LI
Sbjct: 696 HENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALI 755

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIM 152
            G+ + + ++ A  +   M E  +SP+              G   EA++L D+M+ NG++
Sbjct: 756 AGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLL 815

Query: 153 P 153
           P
Sbjct: 816 P 816



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K+   D ALK+F  +   G +PD+ TY   +  Y S   L+E   +  K+    + P+
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK-SAFDVY 120
            +T+T+LID + + G    A      M++ G K ++   S LI        MK +  ++ 
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 121 EEMCENNISPNIA--GRPTE---AMQLYDSMLRNG 150
            +   N  S +IA   +  E   A++L++ M+ +G
Sbjct: 709 IDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHG 743



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    + ALKLF ++ + G   D+  Y  +I G+C   RL+EA  L   +    + P+  
Sbjct: 725 KTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSED 784

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-YFKSQNMKS 115
            +  L+D  CK G   +A  +   M+E G    + +Y  L+ G Y +  N K+
Sbjct: 785 IYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKA 837



 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  L   + +RG+ P    YN+++   C L    EAV+L + +    L P   ++ +
Sbjct: 764 LEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKL 823

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           L+     EG  + A  +F  +L  G   + V +  LIDG  K
Sbjct: 824 LVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLK 865


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  +   LD AL   G++ D GL+P +  YN++I G+C    +  A  L  ++   +L+P
Sbjct: 411 MFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEP 470

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             +T+T L+  +C +G+++ A  ++ +M  KG   ++ T++ L+ G F++  ++ A  ++
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLF 530

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            EM E N+ PN              G  ++A +  + M+  GI+PD
Sbjct: 531 TEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPD 576



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL L  ++ + G+ P+I  YN +I   C     DEA  LF+++  + L PN
Sbjct: 342 LRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPN 401

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ILID FC+ G++D A     +M++ G K +V  Y+ LI+G+ K  ++ +A  +  
Sbjct: 402 DVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMA 461

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P +             G+  +A++LY  M   GI+P     +TL
Sbjct: 462 EMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTL 513



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 61/99 (61%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL+L+ ++T +G+ P I T+ T++ G      + +AV+LF ++    +KPN +T+ +
Sbjct: 488 INKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNV 547

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           +I+ +C+EG M  A    ++M+EKG   +  +Y  LI G
Sbjct: 548 MIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHG 586



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   A++LF  + + G+ PD+  Y  +I   C L  L  A ++  ++       N
Sbjct: 202 LVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVN 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LID  CK+ ++ +A  +   +  K  K +VVTY  L+ G  K Q  +   ++ +
Sbjct: 262 IVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMID 321

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM     SP+ A            G+  EA+ L   +   G+ P+  + + L D
Sbjct: 322 EMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALID 375



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L L  ++ DRGL+PD + Y ++I          EA  +++ +      PN +T+T +I+ 
Sbjct: 667 LGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVING 726

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS-QNMKSAFDVYEEMCE----N 126
            CK G +++A ++ SKM       N VTY C +D   K   +MK A +++  + +    N
Sbjct: 727 LCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLAN 786

Query: 127 NISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             + N+        GR  EA +L   M+ +G+ PD +  +T+
Sbjct: 787 TATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTM 828



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++  A +   ++ ++G+ PD  +Y  +I G C   +  EA    + L     + N I
Sbjct: 554 EEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T L+  FC+EG++++A  +   M  +G   ++V Y  LIDG  K ++ K    + +EM
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEM 673

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            +  + P+              G   EA  ++D M+  G +P+
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPN 716



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +GL  +  TYN +I G+C   R++EA +L  ++    + P+ IT+T +I   C+   +  
Sbjct: 781 KGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKK 840

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           A  +++ M EKG + + V Y+ LI G   +  M  A ++  EM    + PN
Sbjct: 841 AIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPN 891



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 47/191 (24%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI------- 63
           A  ++  + + G  P+ +TY  +I G C    ++EA  L  K+      PN +       
Sbjct: 701 AFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLD 760

Query: 64  ----------------------------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                                       T+ +LI  FC++GRM++A+ + ++M+  G   
Sbjct: 761 ILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSP 820

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLY 143
           + +TY+ +I    +  ++K A +++  M E  I P+            +AG   +A +L 
Sbjct: 821 DCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELR 880

Query: 144 DSMLRNGIMPD 154
           + MLR G+ P+
Sbjct: 881 NEMLRQGLKPN 891



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A+ +   L  + L+PD++TY T++CG C +   +  +++ +++  ++  P+
Sbjct: 272 LCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPS 331

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               + L++   K G++++A  +  ++ E G   N+  Y+ LID   K +N   A  +++
Sbjct: 332 EAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFD 391

Query: 122 EM-----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMP 153
            M     C N+++ +I        G+   A+     M+  G+ P
Sbjct: 392 RMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKP 435



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD  L     +T   L P++ T + ++ G         A++LF+ +  V ++P+   +T 
Sbjct: 173 LDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTG 232

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I + C+   +  A  M  +M   G   N+V Y+ LIDG  K Q +  A  + +++    
Sbjct: 233 VIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKE 292

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           + P++    T              +++ D MLR    P    +S+L +  L+  G  E  
Sbjct: 293 LKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVE-GLRKRGKVEEA 351

Query: 176 I 176
           +
Sbjct: 352 L 352



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 53/96 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  ++ A +L  ++   G+ PD ITY T+I   C  N + +A++L+  +T   ++P+ +
Sbjct: 799 RQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRV 858

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
            +  LI   C  G M  AT + ++ML +G K N  T
Sbjct: 859 AYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTET 894


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 22/179 (12%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++AA ++   +   G+ PD   YN+++ GY  L R+D+A  +++++    +KPN++TF 
Sbjct: 623 NVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFN 682

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +L+    K+G+ D A  +F +MLEK      +V+Y+ LIDG  K+  +  AF  ++EM +
Sbjct: 683 VLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMID 742

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD---------GLLLSTLAD 163
             I P              AGR  EA +L + M++ G+ PD         GL+ S++ D
Sbjct: 743 RGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVD 801



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A++LF ++   G EP I++YNT+I G  S++++DEA + F  +     +P+
Sbjct: 30  LCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPD 89

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I FT LI  FCK G+     M+ ++ L++  + +V  Y+ +I GY K+ ++ + F + E
Sbjct: 90  VIAFTTLIHGFCKAGQPQVGHMLLNQALKRF-RPDVFLYTSVIHGYCKAGDLDTGFKILE 148

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM      P+ A            GR  EA +L++ M ++G + D +   TL
Sbjct: 149 EMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTL 200



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++  LK F  ++     P   TY  +I G C    L +A ++FE++      P+
Sbjct: 408 LLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 467

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T LID F K  +MD+A  +   ML KGP+   VTY  ++ G+ K   +  A +V  
Sbjct: 468 TITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIA 527

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M E    P +             GR  EA Q+   M   G  PD +L ++L D
Sbjct: 528 QMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLID 581



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 6   CHLD---AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C LD    A ++  Q+ +RG EP +  + +++  Y S  R +EA Q+  ++T     P+ 
Sbjct: 514 CKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDV 573

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I +T LID     GR+ +A  +F  M+EKG   + +TY  +I  + K  N+++A ++ E 
Sbjct: 574 ILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILEL 633

Query: 123 MCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M ++ + P+               R  +A  +YD M+ +GI P+ +  + L
Sbjct: 634 MAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVL 684



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 12/179 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +LF +L   G  P+++ Y  +I G     R+++ ++ FE ++     P   T+T
Sbjct: 378 RIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYT 437

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++ID  CK   + DA  +F +M++KG   + +TY+ LIDG+ K+  M  A  + + M   
Sbjct: 438 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 497

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
              P      +            EA ++   M   G  P   + ++L  Y L    ++E
Sbjct: 498 GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEE 556



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 12/148 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D+I+Y T+I G     R+DEA +LFEKL      PN + +T +ID   K GR++D    F
Sbjct: 362 DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 421

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
             M          TY+ +IDG  K+Q +  A  V+E+M +    P+             A
Sbjct: 422 EDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 481

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  EA +L D ML  G  P  +   ++
Sbjct: 482 SKMDEARKLLDVMLTKGPEPTAVTYGSI 509



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 20/168 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ ALK F         PD+  Y ++I GYC    LD   ++ E++      P++  + +
Sbjct: 113 LNQALKRF--------RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFV 164

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK GR+D+A  +F +M + G   + VT+  LI+       +  A ++Y EM E  
Sbjct: 165 LIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERG 224

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P +            AG+  EA ++Y +++   +    +  ++L D
Sbjct: 225 YEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMD 272



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 76/138 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A +L+ ++ +RG EP +   +++I   C   ++DEA ++++ +   ++  + + +  
Sbjct: 210 LDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNS 269

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +CK GR+DD   +  +M+E     ++ TY+ L+ G+ ++  +  A ++++ +    
Sbjct: 270 LMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYG 329

Query: 128 ISPNIAGRPTEAMQLYDS 145
             PN A   T    LYD+
Sbjct: 330 CKPNAATYTTIIQGLYDA 347



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +++  +  + +    + YN+++ GYC L R+D+ ++L  ++      P+
Sbjct: 239 LCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPD 298

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ IL+  F +  R+DDA  +F  +   G K N  TY+ +I G + +Q M+ A   ++
Sbjct: 299 IQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFD 358

Query: 122 EMCEN-NISPNIAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E  +  + +  I G     R  EA +L++ +   G  P+ +  + + D  L++ 
Sbjct: 359 EALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAG 412



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K+   D A  LF ++ ++  + P +++Y  +I G     R+ EA   F+++    + P
Sbjct: 688 LFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIP 747

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              T+T LI +  K GR+ +A  +   M++ G   +V  YS LI G   S  + +A+DV+
Sbjct: 748 ECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVF 807

Query: 121 EEMCENNISPN 131
           +EM +   +PN
Sbjct: 808 QEMMKRGCAPN 818



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPN 61
           +K   +D A  ++ ++   G++P+ +T+N ++ G     + D A  LF E L   ++ P 
Sbjct: 654 VKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPT 713

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++TILID   K GR+ +A   F +M+++G      TY+ LI    K+  +  A  + E
Sbjct: 714 LVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE 773

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +  ++P++                  A  ++  M++ G  P+ +    L
Sbjct: 774 DMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +LF ++   G   D +T+ T+I    +  +LDEA +L+ ++     +P 
Sbjct: 169 LCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPY 228

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                 LI A CK G++D+A  ++  ++ K    + V Y+ L+DGY K   +     +  
Sbjct: 229 LEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLL 288

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E +  P+I            A R  +A++L+  +   G  P+    +T+
Sbjct: 289 QMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTI 340



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A   F ++ DRG+ P+  TY ++I       R+ EA +L E +  + + P+
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 783

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
              ++ LI        +D A  +F +M+++G   N VTY  L  G+
Sbjct: 784 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 829



 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A KL   +   G+ PD+  Y+ +I G    + +D A  +F+++      PN
Sbjct: 759 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPN 818

Query: 62  SITFTILIDAFCKEGRMDD 80
            +T+ +L   F   GR  D
Sbjct: 819 EVTYKVLRRGFRAAGRALD 837


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C       L  Q+ +  + PD++ ++T++   C   ++ EA  + + +    ++PN +T+
Sbjct: 258 CEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTY 317

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             L+D  C +  MD+A  +F  M+  G   NV++Y+ LI+GY K Q M  A  ++EEMC+
Sbjct: 318 NALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ 377

Query: 126 NNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
             + PN             GR  +A+ L+  M+ +G +PD      L DY
Sbjct: 378 KELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDY 427



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
               L  Q+   G+ PD+ T N +I  +C LNRL  A  +  K+  +  +P++ TFT LI
Sbjct: 87  TVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLI 146

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C EG++ DA  +F KM+ +G + NVVTY  LI+G  K  N  +A  +   M + N  
Sbjct: 147 RGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQ 206

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           P++              + TEA  L+  M+  GI PD    ++L
Sbjct: 207 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSL 250



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ PDI TY ++I   C+L        L  ++   ++ P+
Sbjct: 219 LCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPD 278

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG++ +A  +   M+ +G + NVVTY+ L+DG+     M  A  V++
Sbjct: 279 VVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 338

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N  +PN+              R  +A  L++ M +  ++P+ +  +TL
Sbjct: 339 TMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL 390



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  +  ++   G +PD  T+ T+I G C   ++ +A+ LF+K+     +PN 
Sbjct: 115 CHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNV 174

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G  + A  +   M +   + +VV Y+ +ID   K + +  AF+++ +
Sbjct: 175 VTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSK 234

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + IMPD ++ ST+ D
Sbjct: 235 MVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 287



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++   G +P+++TY T+I G C +   + A++L   +     +P+ + 
Sbjct: 152 EGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVV 211

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T +ID+ CK+ ++ +A  +FSKM+ +G   ++ TY+ LI         K    +  +M 
Sbjct: 212 YTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMI 271

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
            + I P++             G+ TEA  + D M+  G+ P+ +  + L D + LQS
Sbjct: 272 NSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS 328



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 19/190 (10%)

Query: 2   LIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           L+  CH   L  A+ LF ++   G  PD+ TY  ++   C  + LDEA+ L + +    +
Sbjct: 390 LMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNM 449

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            P+   +TI+ID  C+ G ++ A  +FS +  KG + NV TY+ +I+G  +   +  A  
Sbjct: 450 DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANK 509

Query: 119 VYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD----GLLLSTLA 162
           ++ EM  N  SP+     T             A+QL   ML  G   D     LL+  L 
Sbjct: 510 LFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 569

Query: 163 DYNLQSSGSQ 172
           D  L  S  Q
Sbjct: 570 DDKLDQSVKQ 579


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE +++ A ++  +  + GL P  + +NTI+ GYC +  +++A    EK+  V L+PN
Sbjct: 367 LCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPN 426

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+  FC+   M++A     KM+EKG   NV TY+ LIDGY +S      F + E
Sbjct: 427 HVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILE 486

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  + PN+                 EA  +   M+  G++P+  + + L D
Sbjct: 487 EMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLID 540



 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 101/185 (54%), Gaps = 11/185 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ ++  A  + G +  RG+ P+   YN +I G C   +L +A + F+++   ++ P 
Sbjct: 507 LCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPT 566

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILI+  CK+G++ +A  + S++  KG   +V+TY+ LI GY  + N++ A ++YE
Sbjct: 567 LVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYE 626

Query: 122 EMCENNISPN-------IAGRPTEAM----QLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            M ++ I P        IAG   E +    ++Y  ML+  ++PD ++ + L    ++   
Sbjct: 627 TMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGD 686

Query: 171 SQEHC 175
            Q+ C
Sbjct: 687 VQKAC 691



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---L 58
           L+     +  L+LF ++ + GL PD   Y   I     L  L  A++L   +TC++   +
Sbjct: 157 LVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIEL---MTCMKRGGV 213

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            P    + ++I   CKE RM DA  +F +ML++    N +TY+ LIDGY K   ++ AF+
Sbjct: 214 SPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFN 273

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           + E M   N+ P I            A    EA ++ + M   G +PD    +TL D +L
Sbjct: 274 IRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHL 333

Query: 167 Q 167
           +
Sbjct: 334 K 334



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A KLF ++ DR + P+ ITYNT+I GYC + +L+EA  + E++    ++P 
Sbjct: 227 LCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPT 286

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  L++  C+   M++A  +  +M   G   +  TY+ L DG+ K  N+ ++  + E
Sbjct: 287 IITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSE 346

Query: 122 EMCENNI------------SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E     +            +    G   +A ++    L NG+ P G+  +T+ +
Sbjct: 347 EAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVN 400



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A K   ++ ++G+ P++ TYNT+I GY      D   Q+ E++    LKPN I++ 
Sbjct: 442 NMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYG 501

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CK+  + +A ++   M+ +G   N   Y+ LIDG   +  +K AF  ++EM   
Sbjct: 502 CLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAR 561

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I P +             G+  EA  L   + R G+  D +  ++L
Sbjct: 562 EIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSL 608



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 47/204 (23%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A  +  ++    +EP IIT+N+++ G C    ++EA ++ E++      P+  T+T
Sbjct: 267 QLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYT 326

Query: 67  -----------------------------------ILIDAFCKEGRMDDATMMFSKMLEK 91
                                              IL++A CKEG M+ A  +  K LE 
Sbjct: 327 TLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLEN 386

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------------EA 139
           G     V ++ +++GY +  ++  A+   E+M    + PN     +            EA
Sbjct: 387 GLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEA 446

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
            +    M+  G++P+    +TL D
Sbjct: 447 EKCIKKMVEKGVLPNVETYNTLID 470



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 59/121 (48%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++ ++    L PD + YN +I  Y     + +A  L   +    ++P+ +T+  LI   
Sbjct: 657 KIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGH 716

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            KEGRM     + + M  +G      TY  LI G+ K ++   A+  Y EM EN  +P++
Sbjct: 717 FKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSV 776

Query: 133 A 133
           +
Sbjct: 777 S 777



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 46/198 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP- 60
           L K+  +  A  L  ++T +GL  D+ITYN++I GY S   + +A++L+E +    +KP 
Sbjct: 577 LCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPT 636

Query: 61  ---------------------------------NSITFTILIDAFCKEGRMDDATMMFSK 87
                                            + + +  LI  + + G +  A  + S 
Sbjct: 637 LNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSA 696

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAGRPT--- 137
           M  +G + + +TY+CLI G+FK   M    ++  +M    + P        I G      
Sbjct: 697 MEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKD 756

Query: 138 --EAMQLYDSMLRNGIMP 153
              A   Y  M  NG  P
Sbjct: 757 FDGAYVWYREMFENGFTP 774



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 76/160 (47%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++DA++ L  +   +G++    T + ++   C    +++A ++ +K     L P  + F 
Sbjct: 337 NVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFN 396

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +++ +C+ G ++ A     KM   G + N VTY+ L+  + + +NM+ A    ++M E 
Sbjct: 397 TIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEK 456

Query: 127 NISPNIA---------GRP---TEAMQLYDSMLRNGIMPD 154
            + PN+          GR        Q+ + M + G+ P+
Sbjct: 457 GVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPN 496



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 57/119 (47%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +L+  +   G+ P + + N  +    S  R ++ +QLF ++    L+P+   +   I A 
Sbjct: 133 ELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAA 192

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            K G +  A  + + M   G    V  Y+ +I G  K + MK A  +++EM +  ++PN
Sbjct: 193 VKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPN 251



 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C L +A++       +G++PD +TYN +I G+    R+ +   L   +    L P + 
Sbjct: 689 KACSLHSAMEA------QGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTE 742

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+ ILI   CK    D A + + +M E G   +V     LI G
Sbjct: 743 TYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITG 785



 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 30  YNTIICGYCSLNRL-DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           ++ ++   CS +++  E+ +L+  +    + P+  +  + +++     R +D   +FS++
Sbjct: 114 FSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEI 173

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           +E G + +   Y   I    K  ++K A ++   M    +SP +              R 
Sbjct: 174 VESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRM 233

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +A +L+D ML   + P+ +  +TL D
Sbjct: 234 KDAEKLFDEMLDRRVAPNRITYNTLID 260



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +     L   +  RGL P   TY+ +I G+C L   D A   + ++      P+  
Sbjct: 718 KEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVS 777

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG 92
               LI    +EGR  DA ++ S+M  KG
Sbjct: 778 ICDNLITGLREEGRSHDADVICSEMNMKG 806


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 79/132 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F  +    ++ D+ITYNT+I GYC   ++DEA +L E +    +KPN
Sbjct: 493 LCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPN 552

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I+ +CK GR++DA  +F +M  KG    +VTYS ++ G F+++   +A ++Y 
Sbjct: 553 EVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYL 612

Query: 122 EMCENNISPNIA 133
            M ++ I  +I 
Sbjct: 613 WMIKSGIKFDIG 624



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  LF Q+ D+GL PD++TYN+II        +D+A  +  ++      PN IT   
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +C  G+ +DA  +F +M   G + +V TY+ L+    K+     A  +++ M +  
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 128 ISPNIA-------GRPTEA-----MQLYDSMLRNGIMPDGLLLSTL 161
             PN A       G  TE        L D M+RNGI PD  + + L
Sbjct: 339 HKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNIL 384



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 13/156 (8%)

Query: 19  TDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           T  G  PD+++YNT+I G     R LD A  LF+++    L P+ +T+  +I A  K   
Sbjct: 194 TRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARA 253

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           MD A ++  +M++ G   N +T++ L+ GY  S     A  V++ MC + + P++     
Sbjct: 254 MDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNT 313

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   GR  EA +++DSM++ G  P+     TL
Sbjct: 314 LMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTL 349



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++  RG+ P+ I +NT++   C    +  A  +F+ +  V ++ + IT+  L
Sbjct: 465 DKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTL 524

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G++D+A  +   M+  G K N VTY+ +I+GY K+  ++ AF ++ +M    +
Sbjct: 525 IDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGV 584

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +P I            A R   A +LY  M+++GI  D
Sbjct: 585 NPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFD 622



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+  FG+L   GL PD + +  +I G C+ ++ D+A +L  ++    + PN+I F  
Sbjct: 429 VDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNT 488

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CKEG +  A  +F  M+    + +V+TY+ LIDGY     +  A  + E M  + 
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN              GR  +A  L+  M   G+ P  +  ST+
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTI 594



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 21/184 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-----LKPNS 62
           +D AL+    L   G  P++ +Y  ++ G C  NR  +A+ L   +           P+ 
Sbjct: 146 MDIALRRMPVL---GCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDV 202

Query: 63  ITFTILIDAFCKEGR-MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +++  +I+   +EGR +D A  +F +ML++G   +VVTY+ +I    K++ M  A  V  
Sbjct: 203 VSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLV 262

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M +N   PN             +G+P +A+ ++  M R+G+ PD    +TL  Y  ++ 
Sbjct: 263 RMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNG 322

Query: 170 GSQE 173
            S E
Sbjct: 323 RSME 326



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   +   G++PD   +N +I  Y    ++D+A+ LF K+    L P+++T+ I++DA C
Sbjct: 365 LLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALC 424

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-----CENNI 128
             G++DDA   F +++ +G   + V +  LI G         A ++  EM     C NNI
Sbjct: 425 MVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNI 484

Query: 129 SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N         G    A  ++D M+R  +  D +  +TL D
Sbjct: 485 FFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLID 526



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +  RG +P+  TY T++ GY +   L +   L + +    ++P+   F ILI 
Sbjct: 327 ARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIG 386

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G++DDA ++FSKM  +G   + VTY  ++D       +  A   +  +    ++P
Sbjct: 387 TYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTP 446

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +       I G     +  +A +L   M+  GI P+ +  +TL ++
Sbjct: 447 DAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNH 492



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 57/95 (60%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +   G++ DI TYN I+ G C  N  D+A+++F+ L  +     + TF I+I
Sbjct: 606 AAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMI 665

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           DA  K GR D+A  +F+ +L +G   NVVTY  ++
Sbjct: 666 DALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMM 700



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KL   +   G++P+ +TYNT+I GYC   R+++A  LF ++    + P  +T++ 
Sbjct: 534 VDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYST 593

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM---- 123
           ++    +  R   A  ++  M++ G K ++ TY+ ++ G  ++     A  +++ +    
Sbjct: 594 ILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLID 653

Query: 124 -CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
               N + NI        GR  EA  L+ S+L  G++P+
Sbjct: 654 FHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPN 692



 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 21/130 (16%)

Query: 46  AVQLFEKLTCV---QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           A+ LF ++  V   ++ PN IT++++ID   + G +D A     +++  G  A  +T+S 
Sbjct: 72  AISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSP 131

Query: 103 LIDGYFKSQNMKSAFDV-YEEMCENNISPNI------------AGRPTEAMQLYDSML-- 147
           L+      +    A D+    M     +PN+              R  +A+ L  +M+  
Sbjct: 132 LLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVA 191

Query: 148 ---RNGIMPD 154
              R G  PD
Sbjct: 192 DDTRGGYPPD 201


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 78/124 (62%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  L  ++++ G+ PD+ TY  +I G C + R+++A  +FEK+    +KPN++ FTI
Sbjct: 167 LDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 226

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CK+G  +    +  +M E+G + + VTY+ +++G  +++++KSA  +  EM    
Sbjct: 227 LIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 286

Query: 128 ISPN 131
           + P+
Sbjct: 287 LRPD 290



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L +A  +F ++  RG+   ++++NT+I G C    LD A  L  +++   + P+
Sbjct: 126 LVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPD 185

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   C+ GR++DA  +F KM  +G K N V ++ LID + K  + ++  +++ 
Sbjct: 186 VYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHR 245

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E  + P+             A     A  +   M   G+ PD +  +TL D
Sbjct: 246 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLID 299



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 4/155 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   +  L+L  ++ +RG+ PD +TYN I+ G C    L  A  +  ++    L+P+++
Sbjct: 233 KKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTV 292

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID +CKE  +D A  +   M+ +G   + VTY+ LI G  K+     A  V  EM
Sbjct: 293 TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEM 352

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            E  + P+     T    + D+  R G +  GL L
Sbjct: 353 MEAGLEPD----NTTYTMVIDAFCRKGDVKTGLRL 383



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +A  +  ++   GL PD +TY T+I GYC    LD A+++ + +    +  + +T+T 
Sbjct: 272 LKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTA 331

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K GR  DA  +  +M+E G + +  TY+ +ID + +  ++K+   + +EM    
Sbjct: 332 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 391

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P +             G+   A  L ++M+  G+ PD +  + L D
Sbjct: 392 RKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLD 439



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 71/128 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A+++   +   G+  D +TY  +I G     R  +A ++  ++    L+P++ 
Sbjct: 303 KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNT 362

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T++IDAFC++G +     +  +M  KG K  VVTY+ +++G+ K   MK+A  +   M
Sbjct: 363 TYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAM 422

Query: 124 CENNISPN 131
               +SP+
Sbjct: 423 INIGVSPD 430



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   + QL D GL P+   +N ++     L  L  A  +F+++    ++   ++F  +I 
Sbjct: 100 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 159

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ G +D A  +  +M E G   +V TY  LI G  +   ++ A  V+E+MC   + P
Sbjct: 160 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 219

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N              G     ++L+  M   G+ PD +  + + +
Sbjct: 220 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVN 264



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 59/99 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++ G++ + GLEPD  TY  +I  +C    +   ++L +++     KP  +T+ ++++
Sbjct: 345 AERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMN 404

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            FCK G+M +A M+ + M+  G   + +TY+ L+DG+ K
Sbjct: 405 GFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCK 443



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +   L+L  ++ ++G +P ++TYN I+ G+C L ++  A  L   +  + + P+ I
Sbjct: 373 RKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDI 432

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           T+ IL+D  CK G++ D   + S    KG   ++  Y+ ++    K +  K+  D
Sbjct: 433 TYNILLDGHCKHGKVTDIEELKSA---KGTVPDLGVYTSIVGEIVKKKTTKTYHD 484


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL  + ++    + P++ T N ++  +C   +L++AVQ+FE++  V + PN  ++  
Sbjct: 197 VDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNT 256

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C++G ++ A  + + M  KG +ANVVT++ LIDG+ K   +  A  V+ EM   N
Sbjct: 257 LIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLN 316

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++PN              G      +LY+ M RNG+  D L  + L
Sbjct: 317 VAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNAL 362



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+ A+++F ++   G+ P+  +YNT+I GYC    L+ AV+L   +    ++ N +
Sbjct: 228 KSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVV 287

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LID FCKEG++ +A+ +FS+M       N +TY+ LI+G+ +  N +    +YEEM
Sbjct: 288 TFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEM 347

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             N +  +I             G+  +A  +   + +  ++P+    S L
Sbjct: 348 SRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSAL 397



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L++A+KL   +  +G+E +++T+N++I G+C   +L EA ++F ++  + + PN+IT+  
Sbjct: 267 LNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNT 326

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+   + G  +    ++ +M   G KA+++TY+ LI G  K    K A  + +E+ + N
Sbjct: 327 LINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKEN 386

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           + PN            I      A QLY SM+R G  P+
Sbjct: 387 LVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPN 425



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A K+F ++    + P+ ITYNT+I G+  +   +   +L+E+++   +K + +
Sbjct: 298 KEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADIL 357

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CKEG+   A  M  ++ ++    N  T+S LI G     N   AF +Y+ M
Sbjct: 358 TYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSM 417

Query: 124 CENNISPN 131
                 PN
Sbjct: 418 VRIGCHPN 425



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 63/118 (53%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +L+ +++  G++ DI+TYN +I G C   +  +A  + ++L    L PN+ TF+ LI   
Sbjct: 342 RLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQ 401

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           C     D A  ++  M+  G   N  T++ L+  + K+++ + AF V  EM E   +P
Sbjct: 402 CIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTP 459



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A  +  +L    L P+  T++ +I G C  N  D A QL++ +  +   PN
Sbjct: 366 LCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPN 425

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVT 99
             TF +L+ AFCK    + A ++  +M E+   P ++V++
Sbjct: 426 EQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSDVLS 465


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L+ Q+  + + PD+ITYNT++ G   + RL EAV LF ++    +KP+  TF IL+D
Sbjct: 138 AFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVD 197

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKEG M  A  + + M+++    +V+TY+ L+DGYF  +    A  V+  M    ++P
Sbjct: 198 GLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTP 257

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           ++                 EA+ L   M    + P+ +  S+L D  L  SG
Sbjct: 258 DVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLID-GLHKSG 308



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  +F  +  RG+ PD+ +Y+ +I G C    +DEAV L +++    + PN++T++ L
Sbjct: 241 NKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSL 300

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID   K GR+ DA  + ++M  +G  A+V+TY+ L+D   K+  +  A  +  ++ +  I
Sbjct: 301 IDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGI 360

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            P+I             GR  +A ++Y  +L  G   D L    L+
Sbjct: 361 QPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALS 406



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  + ++PD+ITYN+++ GY  + + ++A  +F  +    + P+
Sbjct: 199 LCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPD 258

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +++++I+  CK   +D+A  +  +M  K    N VTYS LIDG  KS  +  A+D+  
Sbjct: 259 VHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVN 318

Query: 122 EMCENNISPNIAGRPTEAM---QLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
           EM          G+P + +    L D++ +N  +   + LL+ + D  +Q
Sbjct: 319 EMHNR-------GQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQ 361



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 18/180 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL------NRLDEAVQLFEKLTC 55
           L+K  H    + L  Q+  RG++ D++  N ++  +C L      +++ E +   + +  
Sbjct: 18  LVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKETLHFHDDVIA 77

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
              + N +++  LID  CK G    A  +   +     + NVV YS +I    K + +  
Sbjct: 78  KGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVID 137

Query: 116 AFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           AFD+Y +M    ISP+            I GR  EA+ L++ ML   I PD    + L D
Sbjct: 138 AFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVD 197



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ LF Q+  + ++PDI T+N ++ G C    + +A  +   +    + P+ IT+  
Sbjct: 170 LKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNS 229

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +    + + AT +F+ M  +G   +V +YS +I+G  K++ +  A ++ +EM   +
Sbjct: 230 LMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKS 289

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++PN             +GR  +A  L + M   G   D +  ++L D
Sbjct: 290 MAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLD 337



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 21/134 (15%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++ +RG   D+ITYN+++   C  +++D+A+ L  K+    ++P+  T+TIL+D
Sbjct: 313 AWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVD 372

Query: 71  AFCKEGRMDDAT---------------------MMFSKMLEKGPKANVVTYSCLIDGYFK 109
             CK GR+ DA                       + SKM + G   N VT+  LI   F+
Sbjct: 373 GLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALFE 432

Query: 110 SQNMKSAFDVYEEM 123
           +     A ++  EM
Sbjct: 433 NDMNDKAVELLREM 446



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 12/155 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G + + ++Y T+I G C       A+Q+   +  + ++PN + ++ +I + CK+  + D
Sbjct: 78  KGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVID 137

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A  ++S+ML K    +V+TY+ L+ G      +K A  ++ +M   NI P+I        
Sbjct: 138 AFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVD 197

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                G   +A  +   M++  + PD +  ++L D
Sbjct: 198 GLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMD 232



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 21/112 (18%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL------------------ 43
           L K   +D A+ L  ++ D+G++PDI TY  ++ G C   RL                  
Sbjct: 339 LCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLD 398

Query: 44  ---DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
              D+A+ L  K+      PN +TF ILI A  +    D A  +  +M+ +G
Sbjct: 399 SLFDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARG 450


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ A  LF Q+ + G  PDI+TYN++I G+  L  LDE + +FE++      P+
Sbjct: 66  LCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPD 125

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+ FCK  RM  A     +M   G K NVVTYS  ID + K   ++ A   + 
Sbjct: 126 VITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFV 185

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    ++PN             AG   EA++L + +L+ GI  + +  + L D
Sbjct: 186 DMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 239



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A+K F  +    L P+  TY ++I   C    L EA++L E++    +K N +
Sbjct: 173 KEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVV 232

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+D  C+EGRM +A  +F  ML  G   N  TY+ L+ G+ K++ M+ A D+ +EM
Sbjct: 233 TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 292

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  I P++              R  EA  L   +  +GI  + ++ +TL D   +S  +
Sbjct: 293 KEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA 352

Query: 172 QE 173
            E
Sbjct: 353 TE 354



 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +   ++   GL+P+++TY+T I  +C    L EA++ F  +  V L PN  T+T LID
Sbjct: 145 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 204

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK G + +A  +  ++L+ G K NVVTY+ L+DG  +   MK A +V+  M    ++P
Sbjct: 205 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 264

Query: 131 N-----------IAGRPTE-AMQLYDSMLRNGIMPDGLLLSTL 161
           N           I  +  E A  +   M    I PD LL  T+
Sbjct: 265 NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTI 307



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 49/212 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  ALKL  ++   G++ +++TY  ++ G C   R+ EA ++F  +    + PN  
Sbjct: 208 KAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQE 267

Query: 64  TFTILIDAF-----------------------------------CKEGRMDDATMMFSKM 88
           T+T L+  F                                   C E R+++A ++  ++
Sbjct: 268 TYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEI 327

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-------CENNISPNIAGRPTEAMQ 141
            E G   N V Y+ L+D YFKS     A  + EEM       C+NN           A +
Sbjct: 328 KESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEV-------AKK 380

Query: 142 LYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           L+D ML  G+MPD +  + L D N++    QE
Sbjct: 381 LFDEMLDKGMMPDKIAYTALIDGNMKHGNLQE 412



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D + K F  +   G++  + TYN +I   C    L+ A  LF ++      P+ +T+  L
Sbjct: 38  DLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSL 97

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID   K G +D+   +F +M +     +V+TY+ LI+ + K + M  AF+   EM  N +
Sbjct: 98  IDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGL 157

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN+             G   EA++ +  M R  + P+    ++L D N ++    E
Sbjct: 158 KPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAE 214



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 35/188 (18%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IK   ++ A  +  ++ ++ ++PD++ Y TI+ G C+ +RL+EA  L  ++    +  N
Sbjct: 276 FIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTN 335

Query: 62  SITFTILIDAFCKEGRMDDA-----------------------TMMFSKMLEKGPKANVV 98
           ++ +T L+DA+ K G+  +A                         +F +ML+KG   + +
Sbjct: 336 AVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKI 395

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSM 146
            Y+ LIDG  K  N++ A ++ + M E  +  ++            +G+  +A  L D M
Sbjct: 396 AYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEM 455

Query: 147 LRNGIMPD 154
           +  G++PD
Sbjct: 456 IGKGVLPD 463



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A + F ++    + P   + N ++     + R D + + F+ +    +K +  T+ I
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CKEG ++ A  +F++M E G   ++VTY+ LIDG+ K   +     ++E+M + +
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++              R  +A +    M  NG+ P+ +  ST  D
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFID 169



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A KLF ++ D+G+ PD I Y  +I G      L EA+ L +++  + ++ +   +T 
Sbjct: 375 FEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTA 434

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI      G++  A  +  +M+ KG   + V Y CLI  Y+    +  A ++  EM +  
Sbjct: 435 LIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 494

Query: 128 ISPNIAGRPTEAMQ 141
           +   ++     ++Q
Sbjct: 495 MITGLSDHAVPSVQ 508



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 41/202 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGY-----------------------C 38
           L  E  L+ A  L G++ + G+  + + Y T++  Y                       C
Sbjct: 311 LCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLC 370

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
             N  + A +LF+++    + P+ I +T LID   K G + +A  +  +M+E G + ++ 
Sbjct: 371 KNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLH 430

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSM 146
            Y+ LI G   S  ++ A ++ +EM    + P+              G+  EA++L + M
Sbjct: 431 AYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEM 490

Query: 147 LRNGIMPDGLLLSTLADYNLQS 168
            + G      +++ L+D+ + S
Sbjct: 491 AKRG------MITGLSDHAVPS 506


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 21/189 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  AL +F ++  +G+ PD+ TY+ ++ G C+ ++ +EA  LF ++  + + P+
Sbjct: 234 LCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPD 293

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF IL+D  CKEG + +A  +   M+EKG + N  TY+ L++GY     +  A  V++
Sbjct: 294 VVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFD 353

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M      PN+            A R  EA +L+D M   G++P+        +YN   S
Sbjct: 354 AMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTF------NYNTLIS 407

Query: 170 G---SQEHC 175
           G   +  HC
Sbjct: 408 GLCQAGRHC 416



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  + G++   G EPD +T++++I G C  ++   A++ F+++     +PN  T+ 
Sbjct: 134 RVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYN 193

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  FCK G+   A  +  KM + G + ++V Y+ +IDG  K + +  A D++ E+   
Sbjct: 194 TIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGK 253

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + P++            + +  EA  L++ M+   IMPD +  + L D
Sbjct: 254 GVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVD 302



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ F ++   G +P++ TYNTII G+C + +   AV L +K+     +P+ + +  +ID
Sbjct: 173 AMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIID 232

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+  + +A  +FS++  KG + +V TYS L+ G   S   + A  ++ EM   NI P
Sbjct: 233 GLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMP 292

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           ++             G  +EA  +   M+  G+ P+
Sbjct: 293 DVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPN 328



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 23/162 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  +   + ++G+EP+  TYN+++ GYC  N++ EA  +F+ +      PN
Sbjct: 304 LCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPN 363

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++ ILI+ +CK  R+D+A  +F +M  +G   N   Y+ LI G               
Sbjct: 364 VVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISG--------------- 408

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +C+       AGR  EA +L+  M   G  PD +  + L D
Sbjct: 409 -LCQ-------AGRHCEARELFKDMQAQGCSPDLVTCTILLD 442



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 62/107 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +LF +++ RGL P+   YNT+I G C   R  EA +LF+ +      P+ +
Sbjct: 376 KAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLV 435

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
           T TIL+D+ CK G +D+A  +F  M +   K N+VTY  LI   +KS
Sbjct: 436 TCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKS 482



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +  +G  P++++YN +I GYC   R+DEA +LF++++   L PN+  +  LI 
Sbjct: 348 ARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLIS 407

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GR  +A  +F  M  +G   ++VT + L+D   K   + +A  ++  M ++ + P
Sbjct: 408 GLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKP 467

Query: 131 NIAGRPTEAMQLYDS 145
           N+         +Y S
Sbjct: 468 NLVTYDILIRAMYKS 482



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ AL  F  +  +   P I+ ++ ++     +      + L +++  ++++ +   F 
Sbjct: 64  NIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFN 123

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+ F +  R+D A  +  K+++ G + + VT+S LI+G         A + ++EM  +
Sbjct: 124 ILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVAS 183

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN+             G+ T A+ L   M + G  PD ++ +T+ D
Sbjct: 184 GYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIID 232



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF  +  +G  PD++T   ++   C L  LD A++LF  +    LKPN +T+ ILI 
Sbjct: 418 ARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIR 477

Query: 71  AFCKEGRM 78
           A  K G++
Sbjct: 478 AMYKSGKI 485


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD AL LF ++  RG +P ++TYN ++   CS  R+  A +LF K+T     P+S 
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY 241

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ L++   K GR+++A  +F +M+++G   ++V Y+ L+    K+ NM   + + +EM
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 P+             A +P  A +++  M+ +G  PD +  + L D
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILID 353



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A   F  + +RGL P+I TYN ++  +  + +LD A+ LF ++     +P+
Sbjct: 145 LGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPS 204

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ IL+DA C  GR+  A  +F KM   G   +  TYS L++G  KS  ++ A  V+ 
Sbjct: 205 VVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFR 264

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  ++ ++            AG      +L   M R G  PD    +T+ D
Sbjct: 265 EMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMD 318



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+     + A  ++ +L  +G + D   YN +I  +    +LD A+++F ++     +P
Sbjct: 74  ILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEP 133

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  T+  L++A  K GR+ +A   F  MLE+G   N+ TY+ L+D + K   +  A  ++
Sbjct: 134 DEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLF 193

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            EM      P++            AGR   A +L+  M  +G  PD    STL +  L  
Sbjct: 194 AEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVN-GLGK 252

Query: 169 SGSQEHC 175
           SG  E  
Sbjct: 253 SGRVEEA 259



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 16/175 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   LD+A+++F ++  +G EPD  TY  ++       R+ EA   F+ +    L PN  
Sbjct: 112 RSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIP 171

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+DAF K G++D A  +F++M  +G + +VVTY+ L+D    +  + +A  ++ +M
Sbjct: 172 TYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM 231

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL----LLSTLA 162
             +  SP+             +GR  EA +++  M+  G+  D +    LL+TLA
Sbjct: 232 TGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLA 286



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A K+F ++ DRG+  D++ YN+++        +D   +L ++++     P+
Sbjct: 250 LGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPD 309

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + +F  ++DA  K  + D A  +F++M+E G K ++++Y+ LID Y +  +   A  + E
Sbjct: 310 AFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLE 369

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E    P               G+  EA  + + M   G  PD +  + L D
Sbjct: 370 EMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMD 423



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++D   KL  +++ +G  PD  ++NTI+      N+ D A ++F ++     KP+
Sbjct: 285 LAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPD 344

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++ ILID++ + G    A  M  +M+E G      TY+ LI        +  AF V E
Sbjct: 345 LISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLE 404

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           EM      P++             G    A +L+  M   G+ PD L
Sbjct: 405 EMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTL 451



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R L P+ +    +I  Y   N+  +A  LF +       P    FT LID     G  + 
Sbjct: 26  RPLRPNTLV--KLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFER 83

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--------- 131
           A +++ K+++KG + +   Y+ LI  + +S  + SA +++ EM      P+         
Sbjct: 84  AELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVN 143

Query: 132 ---IAGRPTEAMQLYDSMLRNGIMPD 154
               AGR  EA   +D+ML  G+ P+
Sbjct: 144 ALGKAGRVQEARSFFDAMLERGLTPN 169



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 60/113 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++  ++ + G  P+  TYN++I    +  ++DEA  + E++     +P+ +T+  L+D
Sbjct: 364 ARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMD 423

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
              K G    A  +F +M +KG + + ++Y+  IDG      +  A  ++++M
Sbjct: 424 MLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF Q       P +  +  +I    +    + A  +++KL     + +   + +LI 
Sbjct: 49  AFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIR 108

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F + G++D A  MF +M  KG + +  TY  L++   K+  ++ A   ++ M E  ++P
Sbjct: 109 YFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTP 168

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI             G+   A+ L+  M R G  P  +  + L D
Sbjct: 169 NIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLD 213



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K      A +LF Q+ D+G+EPD ++Y   I G    +RLDEA+ LF+ +  V    
Sbjct: 424 MLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPV 483

Query: 61  NSITFTILIDAFCKEG 76
           +   + ILI A  + G
Sbjct: 484 DKAMYRILIRAAHRAG 499



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 53/109 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +  +D A  +  ++   G  PD++TYN ++           A +LF+++    ++P+
Sbjct: 390 LATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPD 449

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
           ++++ + ID    + R+D+A ++F  M   G   +   Y  LI    ++
Sbjct: 450 TLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRA 498


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 48/217 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITYNT+I G C   ++DEA +L   +  V +KP+ +
Sbjct: 493 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI+ +C+  RMDDA  +F +M+  G   N++TY+ ++ G F ++   +A ++Y   
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 612

Query: 121 ----------------EEMCENNISP---------------------NI-------AGRP 136
                             +C+NN++                      NI        GR 
Sbjct: 613 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRM 672

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            EA  L+ +   NG++PD    S +A+ NL   GS E
Sbjct: 673 DEAKDLFAAHSANGLVPDVRTYSLMAE-NLIEQGSLE 708



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 12/154 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  + I +N+II  +C   R+ E+ +LF+ +  + +KP+ IT+  L
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  C  G+MD+AT + + M+  G K ++VTY  LI+GY +   M  A  +++EM  + +
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNG 150
           SPNI              R   A +LY S+ ++G
Sbjct: 583 SPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITY-----------------------------------NTIIC 35
           A K+F  +T RGLEPDI TY                                   N +IC
Sbjct: 325 ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILIC 384

Query: 36  GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
            Y    ++D+A+ +F K+    L PN + +  +ID  CK G +DDA + F +M+++G   
Sbjct: 385 AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           N++ Y+ LI G         A ++  EM +  I  N              GR  E+ +L+
Sbjct: 445 NIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 504

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ PD +  +TL D
Sbjct: 505 DLMVRIGVKPDIITYNTLID 524



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE   D A   + ++ DRG+ PD++TY++II   C    +D+A+++   +    + P+
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++  +C  G+  +A     KM   G + NVVTYS L++   K+     A  +++
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P+IA            G   E   L D M+RNGI PD  + + L
Sbjct: 331 SMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 382



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 13/182 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ PD +TYN+I+ GYCS  +  EA+   +K+    ++PN
Sbjct: 246 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPN 305

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ L++  CK GR  +A  +F  M ++G + ++ TY  L+ GY     +     + +
Sbjct: 306 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLD 365

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M  N I P     NI         +  +AM ++  M ++G+ P+ +   T+ D  L  S
Sbjct: 366 LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDV-LCKS 424

Query: 170 GS 171
           GS
Sbjct: 425 GS 426



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITF 65
           DA   +  ++T+ G  PD+ +YN ++ G C  NR  EA++L   +   +     P+ +++
Sbjct: 145 DAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +++ F KEG  D A   + +ML++G   +VVTYS +I    K+Q M  A +V   M +
Sbjct: 205 NTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK 264

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N + P+             +G+P EA+     M  +G+ P+ +  S+L +Y  ++  S E
Sbjct: 265 NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE 324



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 15/159 (9%)

Query: 11  ALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           AL+L   + D    G  PD+++YNT++ G+      D+A   + ++    + P+ +T++ 
Sbjct: 182 ALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSS 241

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I A CK   MD A  + + M++ G   + +TY+ ++ GY  S   K A    ++M  + 
Sbjct: 242 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG 301

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + PN+             GR TEA +++DSM + G+ PD
Sbjct: 302 VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++   GL P+++ Y T+I   C    +D+A+  FE++    L PN I
Sbjct: 388 KQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNII 447

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI   C   + D A  +  +ML++G   N + ++ +ID + K   +  +  +++ M
Sbjct: 448 VYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLM 507

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P+I            AG+  EA +L  SM+  G+ PD +   TL
Sbjct: 508 VRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTL 557



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL-FEKLTCVQLKPNS 62
           +   LD      G +  +G   D IT+  ++ G C+  R  +A+ +   ++T +   P+ 
Sbjct: 104 RAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDV 163

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            ++  L+   C E R  +A  +   M +    G   +VV+Y+ +++G+FK  +   A+  
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 120 YEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           Y EM +  I P++    +            +AM++ ++M++NG+MPD
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T  G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 604 AAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 663

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GRMD+A  +F+     G   +V TYS + +   +  +++   D++  M EN  S
Sbjct: 664 GALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCS 723

Query: 130 PN 131
            +
Sbjct: 724 AD 725



 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 45/88 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I       R+DEA  LF   +   L P+  T++++
Sbjct: 638 DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLM 697

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  A+
Sbjct: 698 AENLIEQGSLEELDDLFLSMEENGCSAD 725



 Score = 39.3 bits (90), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT---CVQLKPNSITFTI 67
           A  +F +L  RG    I   N  +    + +    AV  + ++      ++ P   T+ I
Sbjct: 39  ARHVFDELLRRGRGASIYGLNRALAD-VARHSPAAAVSRYNRMARAGAGKVTPTVHTYAI 97

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCEN 126
           LI   C+ GR+D        +++KG + + +T++ L+ G    +    A D V   M E 
Sbjct: 98  LIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 157

Query: 127 NISPNI 132
              P++
Sbjct: 158 GCIPDV 163


>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 738

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 74/125 (59%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A++ +  +  RG+ PD++TYNT+I GY    +++EA +LF ++    + PN I+FT
Sbjct: 242 RLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISFT 301

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++  +   G++DDA  +F +M   G K N VT+S L+ G   ++ M  A DV  EM E 
Sbjct: 302 TMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVER 361

Query: 127 NISPN 131
            I+P 
Sbjct: 362 YIAPK 366



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++KLF ++ + G++  + +Y+ +        R   A + +  +    ++P   T+ IL+ 
Sbjct: 176 SVKLFKKMKELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAMLNESVEPTRHTYNILLW 235

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                 R+D A   +  M  +G   +VVTY+ LI+GYF+ + ++ A  ++ EM   +I P
Sbjct: 236 GMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVP 295

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+            AG+  +A+++++ M   G+ P+ +  STL
Sbjct: 296 NVISFTTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTL 338



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 30/185 (16%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--------- 54
           K   LDAA  +   +    +  +   Y  +I  +C  N  D+A +L +K+          
Sbjct: 380 KAGDLDAAGDVLKAMIRLSIPTEAGHYGVLIENFCKANLYDKAEKLLDKMIEKEIVLRQK 439

Query: 55  ------CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
                   +++P++  + ++I   C+ GR   A   F ++++KG + + V+++ LI G+ 
Sbjct: 440 NAYETELFEMEPSA--YNLMIGYLCEHGRTGKAETFFRQLMKKGVQ-DSVSFNNLICGHS 496

Query: 109 KSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           K  N  SAF++ + M    ++ +              G P +A    D ML +G +P+  
Sbjct: 497 KEGNPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTALDGMLESGHLPESS 556

Query: 157 LLSTL 161
           L  ++
Sbjct: 557 LYRSV 561



 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  LID++ + G + ++  +F KM E G    V +Y  L     +      A   Y  M
Sbjct: 159 AFVSLIDSYGRAGIVQESVKLFKKMKELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAM 218

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              ++ P             ++ R   A++ Y+ M   GI+PD +  +TL
Sbjct: 219 LNESVEPTRHTYNILLWGMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTL 268



 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/129 (20%), Positives = 56/129 (43%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE + D+A ++   +  RG+  D  +Y  +I  Y       +A    + +      P S 
Sbjct: 497 KEGNPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTALDGMLESGHLPESS 556

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  ++++   +GR+  A+ +   M+EKG K N+   S +++      +++ A      +
Sbjct: 557 LYRSVMESLFDDGRVQTASRVMKSMVEKGVKENMDLVSKVLEALLMRGHVEEALGRIHLL 616

Query: 124 CENNISPNI 132
             N   P+ 
Sbjct: 617 MLNGCEPDF 625


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  +F  +  +G  P++ TY +++ GYC + R++EAVQL ++     L P+ +TFT
Sbjct: 217 QMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFT 276

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I   C+ GR   A  +F  +   G   N++TY  L+DG  K  N++ AF +++EM  +
Sbjct: 277 TIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRS 336

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
            + PN+         L DS+ + G + DG  L S L D  L+
Sbjct: 337 TVKPNLVIYTI----LIDSLCKCGKIKDGKELFSRLIDEGLK 374



 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 15/171 (8%)

Query: 6   CHL---DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL   D  L +  ++   GLEP I+T+ T++ G C   ++D+ + L++ +    L+PN 
Sbjct: 108 CHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNV 167

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ ++I++  K G+ ++A     +M + G   NVV YS LIDGY     M  A  V++ 
Sbjct: 168 YTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDL 227

Query: 123 MCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M     +PN+              R  EA+QL D  LR G++PD +  +T+
Sbjct: 228 MVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTI 278



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +D  + L+  +  RGL+P++ TYN II       + +EA+   +++  V   PN + 
Sbjct: 145 EGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVN 204

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ LID +C  G+MD+A  +F  M+ KG   NV TY+ L++GY K + ++ A  + +E  
Sbjct: 205 YSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETL 264

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              + P+I            AGRP  A QL+  +  +G  P+ +    L D
Sbjct: 265 RKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLD 315



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 12/167 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +LF  +   G  P+I+TY  ++ G C    L+EA  LF+++    +KPN + +TILI
Sbjct: 290 AAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILI 349

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D+ CK G++ D   +FS+++++G K NV TY+ L+    K   +  A  ++ +M E+  +
Sbjct: 350 DSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCT 409

Query: 130 PN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           P+       I G      P+ A QL + M+  G   D    + L D+
Sbjct: 410 PDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALLNDF 456



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 18/180 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A++L  +   +GL PDI+T+ TII G C   R   A QLF  +      PN +T+ 
Sbjct: 252 RIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYG 311

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L+D  CK G +++A  +F +M     K N+V Y+ LID   K   +K   +++  + + 
Sbjct: 312 VLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDE 371

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
            + PN+             G   EA +L+  M  +G  PD         YN+   G  +H
Sbjct: 372 GLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDK------CAYNVIIQGFLQH 425



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 70/134 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A  LF ++    ++P+++ Y  +I   C   ++ +  +LF +L    LKPN
Sbjct: 317 LCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPN 376

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T L+ A CKEG + +A  +F KM E G   +   Y+ +I G+ + ++   A  + E
Sbjct: 377 VYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVE 436

Query: 122 EMCENNISPNIAGR 135
           EM     S + A R
Sbjct: 437 EMVNRGFSADAATR 450



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL  F  +  R   P I+ ++ +      +   +  V L +++  + ++ +  + +IL
Sbjct: 44  DDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSIL 103

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ FC   R+D    + SK+L+ G + ++VT++ L++G      M     +Y++M    +
Sbjct: 104 INCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGL 163

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN+            +G+  EA+     M + G +P+ +  STL D
Sbjct: 164 QPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLID 210


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 99/176 (56%), Gaps = 13/176 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYC-SLNRLDEAVQLFEKLTCVQLK 59
           +L++E H+  A+  + ++ ++G+ P +++ N +I   C +   ++ A +LF ++     +
Sbjct: 129 ILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQ 188

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+S T+  LI+  CK G++  A  +  +M EKG   +VV+Y+ LI G  +S N+  A ++
Sbjct: 189 PDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIEL 248

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EEM  N I PN+            +G  ++AM+L + M+R  ++P+ +  STL +
Sbjct: 249 LEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLIN 304



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 12/160 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A +LF ++ +RG +PD  TY T+I G C L ++ +A +L +++    L P+ +++T 
Sbjct: 172 VESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTS 231

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+   +D+A  +  +M+  G + NV TYS L+DG  KS +   A ++ E M    
Sbjct: 232 LIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRR 291

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
           + PN+             G+  EA+++ D M   G+ PD 
Sbjct: 292 LLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDA 331



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A +L  ++ ++GL P +++Y ++I G C  N LDEA++L E++    ++PN  T++ 
Sbjct: 207 ISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSS 266

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK G    A  +   M+ +    N+VTYS LI+G  K    + A ++ + M    
Sbjct: 267 LMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQG 326

Query: 128 ISPNIA--GRP----------TEAMQLYDSMLRNGIMPD 154
           + P+    GR            EA    D M   GI P+
Sbjct: 327 LKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPN 365



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 19/164 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A++L  ++   G+EP++ TY++++ G C      +A++L E +   +L PN +T++
Sbjct: 241 NLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYS 300

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CKEG+  +A  +  +M  +G K +   Y  +I G   + N + A +  +EM   
Sbjct: 301 TLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALG 360

Query: 127 NISPNIAGR-------------------PTEAMQLYDSMLRNGI 151
            ISPN A                     PT A QLY SM   GI
Sbjct: 361 GISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGI 404



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 13/155 (8%)

Query: 32  TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
           TI  GY  ++R  +A+++F K+   Q+KP   ++  + D   +E  +  A   + +M EK
Sbjct: 90  TICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREK 149

Query: 92  GPKANVVTYSCLIDGYFKS-QNMKSAFDVYEEMCENNISPNI------------AGRPTE 138
           G    VV+ + LI    K+ + ++SAF ++ EM      P+              G+ ++
Sbjct: 150 GIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQ 209

Query: 139 AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           A +L D M   G+ P  +  ++L     QS+   E
Sbjct: 210 AKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDE 244



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A+++  ++  +GL+PD   Y  II G C+     EA    +++    + PN
Sbjct: 306 LCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPN 365

Query: 62  SITFT-------ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
             ++T       +++   C       A  ++  M  +G    + T+ CL+  + K  ++ 
Sbjct: 366 RASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLN 425

Query: 115 SAFDVYEEMCENNISPN 131
            A  + EEM  +   P+
Sbjct: 426 KAARILEEMILDGCIPD 442


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 12/171 (7%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C       L  Q+ +  + PD++ ++T++   C   ++ EA  + + +    ++PN +T+
Sbjct: 256 CEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTY 315

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             L+D  C +  MD+A  +F  M+  G   NV++Y+ LI+GY K Q M  A  ++EEMC+
Sbjct: 316 NALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ 375

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
             + PN              GR  +A+ L+  M+ +G +PD      L DY
Sbjct: 376 KELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDY 426



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 12/162 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +  +D A+K+F  +   G  P++I+YNT+I GYC + R+D+A  LFE++   +L PN++T
Sbjct: 325 QSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVT 384

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  L+   C  GR+ DA  +F +M+  G   ++ TY  L+D   K  ++  A  + + + 
Sbjct: 385 YNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIE 444

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +N+ P+I            AG    A  ++ ++   G+ P+
Sbjct: 445 GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPN 486



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
               L  Q+   G+ PD+ T N +I  +C LNR   A  +  K+  + L+P++ TFT LI
Sbjct: 85  TVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLI 144

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C EG++ DA  +F KM+ +G + NVVTY  LI+G  K  N  +A  +   M + N  
Sbjct: 145 RGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQ 204

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           P++              + TEA  L+  M+  GI PD    ++L
Sbjct: 205 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSL 248



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ PDI TY ++I   C+L        L  ++   ++ P+
Sbjct: 217 LCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPD 276

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG++ +A  +   M+ +G + NVVTY+ L+DG+     M  A  V++
Sbjct: 277 VVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 336

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N  +PN+              R  +A  L++ M +  ++P+ +  +TL
Sbjct: 337 TMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL 388



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  +  ++   GL+PD  T+ T+I G C   ++ +A+ LF+K+     +PN 
Sbjct: 113 CHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNV 172

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G  + A  +   M +   + +VV Y+ +ID   K + +  AF+++ +
Sbjct: 173 VTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSK 232

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + IMPD ++ ST+ D
Sbjct: 233 MVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 285



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 76/132 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  RG+EP+++TYN ++ G+C  + +DEAV++F+ +      PN
Sbjct: 287 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPN 346

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++  LI+ +CK  RMD AT +F +M +K    N VTY+ L+ G      ++ A  ++ 
Sbjct: 347 VISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFH 406

Query: 122 EMCENNISPNIA 133
           EM  +   P++A
Sbjct: 407 EMVAHGQIPDLA 418



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  LF ++  + L P+ +TYNT++ G C + RL +A+ LF ++      P+  T+ I
Sbjct: 363 MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRI 422

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK+  +D+A  +   +       ++  Y+ +IDG  ++  +++A D++  +    
Sbjct: 423 LLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKG 482

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           + PN+             G   EA +L+  M  NG  PDG   +T+    LQ+
Sbjct: 483 LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQN 535



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++   G +P+++TY T+I G C +   + A++L   +     +P+ + 
Sbjct: 150 EGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVV 209

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T +ID+ CK+ ++ +A  +FSKM+ +G   ++ TY+ LI         K    +  +M 
Sbjct: 210 YTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMI 269

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
            + I P++             G+ TEA  + D M+  G+ P+ +  + L D + LQS
Sbjct: 270 NSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQS 326



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ HLD A+ L   +    ++PDI  Y  +I G C    L+ A  +F  L+   L+PN
Sbjct: 427 LCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPN 486

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I+  C+ G +D+A  +F +M   G   +  TY+ +  G  +++    A  + +
Sbjct: 487 VRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQ 546

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 547 EMLARGFSADVS 558



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A KLF ++   G  PD  TYNTI  G         A+QL +++       +  T T+
Sbjct: 503 LDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTL 562

Query: 68  LIDAFCKE 75
           L++  C +
Sbjct: 563 LVEMLCDD 570


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 98/178 (55%), Gaps = 18/178 (10%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +  +D A+K+F  +  +G  PD+I+Y T+I GYC ++++D+A+ LFE++   +  P++ T
Sbjct: 314 QSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKT 373

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  L+   C  GR+ DA  +F +M+ +G   ++VTYS L+D   K+ +++ A  + + + 
Sbjct: 374 YNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIE 433

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            +N++P+I            AG    A  L+ ++   G+ P      ++  YN+   G
Sbjct: 434 ASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHP------SVWTYNIMIHG 485



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+ P++ T N +I  +C LNR+  A  +  K+  +  +P+  TFT
Sbjct: 71  HYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFT 130

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F KM+++G + NVVTY  LI+G  K  N  +A  +   M + 
Sbjct: 131 TLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG 190

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           N  P++              + TEA  L+  M+  GI PD    ++L 
Sbjct: 191 NCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLV 238



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF Q+  +G+ PDI TY +++   C+L        L  ++   ++ P+
Sbjct: 206 LCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPD 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG++ +A  +   M+++G + +VVTY+ L+DG+     M  A  V++
Sbjct: 266 VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFD 325

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P++    T            +AM L++ M R   +PD    +TL
Sbjct: 326 MMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTL 377



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 13/177 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++ D G +P+++TY T+I G C +     A++L   +     +P+ + 
Sbjct: 139 EGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVI 198

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T +ID+ CK+ ++ +A  +FS+M+ +G   ++ TY+ L+         K    +  +M 
Sbjct: 199 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV 258

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
            + I P++             G+ TEA ++ D M++ G+ PD +  +TL D + LQS
Sbjct: 259 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQS 315



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  +  ++   G +PD  T+ T+I G C   ++ EA+ LF+K+     +PN 
Sbjct: 102 CHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNV 161

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G    A  +   M +   + +VV Y+ +ID   K + +  AF+++ +
Sbjct: 162 VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQ 221

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + I+PD ++ ST+ D
Sbjct: 222 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 274



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 23/162 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A ++   +  RG+EPD++TY T++ G+C  + +DEAV++F+ +      P+
Sbjct: 276 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 335

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++T LI+ +CK  ++D A  +F +M  K    +  TY+ L+ G               
Sbjct: 336 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHG--------------- 380

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +C         GR  +A+ L+  M+  G MPD +  S L D
Sbjct: 381 -LCH-------VGRLQDAIALFHEMVARGQMPDLVTYSILLD 414



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++  +   PD  TYNT++ G C + RL +A+ LF ++      P+ +T++I
Sbjct: 352 IDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 411

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D+ CK   +++A  +   +       ++  Y+ +IDG  ++  +++A D++  +    
Sbjct: 412 LLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG 471

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           + P++             G   EA +L+  M  N   PDG   +T+A   LQ++
Sbjct: 472 LHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNN 525



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 19/183 (10%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++  RG  PD++TY+ ++   C    L+EA+ L + +    L P+ 
Sbjct: 382 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDI 441

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             + I+ID  C+ G ++ A  +FS +  KG   +V TY+ +I G  K   +  A  ++ E
Sbjct: 442 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFME 501

Query: 123 MCENNISP-----NIAGR-------PTEAMQLYDSMLRNGIMPD----GLLLSTLADYNL 166
           M  N+ SP     N   R          A+QL + ML  G   D     LL+  L+D  L
Sbjct: 502 MDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDGL 561

Query: 167 QSS 169
             S
Sbjct: 562 DQS 564



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K CHL+ A+ L   +    L PDI  YN II G C    L+ A  LF  L+   L P+
Sbjct: 416 LCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPS 475

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I   CK G +++A  +F +M       +  TY+ +  G+ ++     A  + E
Sbjct: 476 VWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLE 535

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 536 EMLARGFSADVS 547



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A KLF ++      PD  TYNTI  G+   N    A+QL E++       +
Sbjct: 486 LCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSAD 545

Query: 62  SITFTILIDAFCKEG 76
             T T+L++    +G
Sbjct: 546 VSTTTLLVEMLSDDG 560


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P + +YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVY 213

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+   KE  MDD   +F +ML KG   N VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 214 TYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P+              G   +A  L D M   G+ PD    +TL D
Sbjct: 274 LSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLID 325



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D   +LF ++  +GL P+ +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 222 LXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L    CK+G ++ A  +  +M  KG K +  TY+ LIDG  K  ++ +AF+  +
Sbjct: 282 FITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRK 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G+ PD
Sbjct: 342 RMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPD 386



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 67/132 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  L  +++ +GL+PD  TY T+I G C    LD A +  +++    +  +
Sbjct: 292 LCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++       +
Sbjct: 352 DVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXLK 411

Query: 122 EMCENNISPNIA 133
           EM  N   P + 
Sbjct: 412 EMQRNGHVPXVV 423



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 15/187 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P 
Sbjct: 117 LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPX 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++  L++ + + G +D+   + S M   G + +V TYS LI+G  K   M    ++++
Sbjct: 177 VXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFD 236

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + PN              GR   AM++Y  ML   + PD +  +TL  Y L   
Sbjct: 237 EMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLX-YGLCKK 295

Query: 170 G--SQEH 174
           G  +Q H
Sbjct: 296 GDLNQAH 302



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LDAA +   ++    +  D + Y  +I G C   R  +A ++  ++  V LKP+  
Sbjct: 329 KEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXG 388

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +        +M   G    VVTY+ L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLMNG 431


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  L  A    G + + G++P+++TYNT+I GYCS  R++ A  + + +    ++P
Sbjct: 245 VLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEP 304

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +S T+  LI   CK G++++A+ +  KM E G     VTY+ LIDGY    ++  AF   
Sbjct: 305 DSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYR 364

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM    I P ++            G+  EA  +   M  +GI+PD +  + L
Sbjct: 365 DEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNIL 417



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +D A  +   + D G+ PD ITYN +I GYC      +A  L +++    ++P 
Sbjct: 386 LFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPT 445

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI    K  RM  A  +F K++ +G   +++ ++ LIDG+  + N+  AF + +
Sbjct: 446 LVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLK 505

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM + NI P+              G+  EA +L   M R GI PD +  +TL
Sbjct: 506 EMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTL 557



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+ A  +  ++ + GL P  +TYNT+I GYC+   L +A    +++    + P   
Sbjct: 318 KGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVS 377

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI A   EG+MD+A  M   M + G   + +TY+ LI+GY +  N K AF++++EM
Sbjct: 378 TYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I P +              R   A  L++ ++R G  PD ++ + L D
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALID 489



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   + AA  LF ++   G  PD+I +N +I G+C+   LD A  L +++    + P
Sbjct: 455 VLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVP 514

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  L+   C+EG++++A  +  +M  +G + + ++Y+ LI GY K  ++  AF + 
Sbjct: 515 DEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIR 574

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +EM     +P        I G     +   A +L   M+  GI PD
Sbjct: 575 DEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPD 620



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           MLI+ C      D A + F  + ++G+ P I T+N ++  +  LN+ +    L+ ++  +
Sbjct: 171 MLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRL 230

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           ++K    TF I+I+  CKEG++  A      M   G K NVVTY+ +I GY     ++ A
Sbjct: 231 KIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGA 290

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             V + M    + P+              G+  EA  + + M   G++P  +  +TL D
Sbjct: 291 RMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLID 349



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 60/115 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A +L  ++  RG+ PD I+YNT+I GY     +++A  + +++  +   P  +
Sbjct: 528 REGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLL 587

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           T+  LI   CK  + D A  +  +M+ KG   +  TY  LI+G  K  +   A D
Sbjct: 588 TYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEASD 642



 Score = 39.3 bits (90), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +SI F +LI A C+  R DDA   F  M EKG    + T++ ++  + K    ++ + +Y
Sbjct: 165 SSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLY 224

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EM    I   +             G+  +A     SM   G+ P+ +  +T+
Sbjct: 225 AEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTV 277


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALKLF Q+ +    P + TY  II   C L R  EA+ +F+++T    +PN  T+T+
Sbjct: 290 VDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTV 349

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI + C++   DDA  + + MLEKG   +VVTY+ LIDGY K     SA ++   M  NN
Sbjct: 350 LICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNN 409

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
            SPN       I G        +AM L   ML   + P+
Sbjct: 410 CSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPN 448



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L +A KL   + + GL PD  TY+  I   C    ++EA  LFE L    +K N +
Sbjct: 461 KEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEV 520

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID +CK G++ D   +  KML  G   N +TY+ LIDGY K +N K A  + + M
Sbjct: 521 IYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIM 580

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            + +I P                   +A  ++D ML  G  PD  + +  
Sbjct: 581 IKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAF 630



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  LF  L ++G++ + + Y+T+I GYC + ++ +   L +K+      PN
Sbjct: 494 LCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPN 553

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SIT+  LID +CKE    +A ++   M+++  +    TY+ LID   K      A D+++
Sbjct: 554 SITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFD 613

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M      P++             GR  +A  L   M   GIMPD +L +   D
Sbjct: 614 QMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFID 667



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 23/157 (14%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A+ L  ++ +R L+P+++TYN +I G C    L  A +L   +    L P+  T++
Sbjct: 429 NIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYS 488

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + ID  CK G +++A  +F  + EKG KAN V YS LIDGY K                 
Sbjct: 489 VFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK----------------- 531

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  G+ ++   L D ML  G +P+ +  ++L D
Sbjct: 532 ------VGKVSDGRFLLDKMLSAGCVPNSITYNSLID 562



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++ + D A K+   + ++GL P ++TYN +I GYC       A+++   +      PN
Sbjct: 354 LCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPN 413

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  FC+   +  A  +  KMLE+  + NVVTY+ LI G  K  ++ SA+ +  
Sbjct: 414 ARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLS 473

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E+ + P+              G   EA  L++S+   GI  + ++ STL D
Sbjct: 474 LMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLID 527



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F ++T++  +P++ TY  +IC  C  +  D+A ++   +    L P+ +T+  LID
Sbjct: 328 ALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALID 387

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK+G    A  + S M       N  TY+ LI G+ + +N+  A  +  +M E  + P
Sbjct: 388 GYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQP 447

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G    A +L   M  +G++PD    S   D
Sbjct: 448 NVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFID 492



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D    ++ ++ D  + P+I T NT++ GYC L  + EA     K+    L  ++ T+T 
Sbjct: 185 IDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTS 244

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C+   +D A  +F  M  KG   N V+Y+ LI G+ +++ +  A  ++ +M E+N
Sbjct: 245 LILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDN 304

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             P +             GR TEA+ ++  M      P+
Sbjct: 305 CWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPN 343



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   D A  +F Q+   G  PD+  Y   I  YCS  RL +A  L  K+    + P+
Sbjct: 599 LLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPD 658

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           ++ +T+ IDA+ + G +D A  +  +M E G + +  TYSCLI
Sbjct: 659 TMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLI 701



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++   GL  D  TY ++I GYC    +D A  +F  +       N +++T LI  FC+  
Sbjct: 229 KIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEAR 288

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP 136
           R+D+A  +FS+M E      V TY+ +I    +      A ++++EM E +  PN+    
Sbjct: 289 RVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYT 348

Query: 137 T------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                        +A ++ + ML  G++P  +  + L D
Sbjct: 349 VLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALID 387



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   A  L   +  R +EP   TY  +I      +  D+A  +F+++      P+  
Sbjct: 566 KEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVF 625

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T  I A+C  GR+ DA ++  KM  KG   + + Y+  ID Y +  ++  AF + + M
Sbjct: 626 IYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRM 685

Query: 124 CENNISPN 131
            E    P+
Sbjct: 686 HEVGCEPS 693



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 12/136 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YN ++        +DE   ++ ++    + PN  T   +++ +CK G + +A +  SK++
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-----CENNIS-PNI------AGRPT 137
           + G   +  TY+ LI GY +++N+ +A  ++  M       N +S  N+      A R  
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVD 291

Query: 138 EAMQLYDSMLRNGIMP 153
           EA++L+  M  +   P
Sbjct: 292 EALKLFSQMHEDNCWP 307



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 18/155 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            L LFG++ + G  P+  TY   I G C +  L+ A +LF+ +      PN   +  L+ 
Sbjct: 742 TLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLG 801

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--CENNI 128
             C+ G   +A      M+E     ++ +   L+ G +   N + A  V+     CE N 
Sbjct: 802 CSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYN- 860

Query: 129 SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         YD M+   ++ DGLL   L+D
Sbjct: 861 --------------YDEMVWK-VLIDGLLKKGLSD 880



 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 48/102 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF  + ++G  P+   YN+++   C L    EA++  + +   +  P+  +  +
Sbjct: 774 LEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKL 833

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           L+     EG  + A  +F   L+     + + +  LIDG  K
Sbjct: 834 LLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLK 875


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L+ A K+  ++  +GL P+   ++ +I G+C L  +D A ++++ +    +KPN
Sbjct: 428 LVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPN 487

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ +ID   + G+M +A ++F +M+E     N++TYS ++ GYF+  +   A   +E
Sbjct: 488 VVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWE 547

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M     +PN              GR  +AM ++  ML  G +PD +  +++
Sbjct: 548 DMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSM 599



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA+ +  ++    + P ++TY  ++ G     RL++A ++ E++    L PN   F+ +I
Sbjct: 401 AAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVI 460

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FCK G +D A+ ++  M+  G K NVV YS +IDG  +   M  A  ++ EM E    
Sbjct: 461 TGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCV 520

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           PNI             G  ++A+  ++ MLR G  P+ +  S L
Sbjct: 521 PNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVL 564



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ +    P+I+TY++++ GY  +    +A+  +E +  +   PN++T+++LI+  C
Sbjct: 510 LFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLC 569

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-YEEMCENNISPNI 132
             GR  DA M++  ML +G   + + Y+ +I G+  S  + +   + Y+ +   +  P++
Sbjct: 570 NVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDV 629

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       A     AM L + ML     PD +  +T 
Sbjct: 630 ICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTCNTF 670



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  +  +   G  P+ +TY+ +I G C++ R  +A+ +++ +      P++I +T +I 
Sbjct: 542 ALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIK 601

Query: 71  AFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            FC  G +D    +F  ML +G    +V+ Y+ L+DG  +++++  A D+  +M +    
Sbjct: 602 GFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQACD 661

Query: 130 PN 131
           P+
Sbjct: 662 PD 663



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 46/187 (24%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--------------------------- 55
           L PD  TY+T++       R+D+AV L  ++                             
Sbjct: 310 LVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGVVAAEAFNPVLGAMLRTGDVTGAAK 369

Query: 56  ----VQLK---PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
               +QLK   P++ T+ +L+      GR   A  +  +M        V+TY  ++DG  
Sbjct: 370 LFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLV 429

Query: 109 KSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGL 156
           +   ++ A  V EEM    + PN              G    A +++D+M+  GI P+ +
Sbjct: 430 RCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVV 489

Query: 157 LLSTLAD 163
           L S + D
Sbjct: 490 LYSAMID 496


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A  L  Q+ ++G +P   TY  +I   C    +D+A  LF+++     KPN  T+T
Sbjct: 281 RLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYT 340

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LID  C++G++++A  +  KM++ G   +V+TY+ LI+GY K   +  AF++   M + 
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN+             G+P +A+ L   ML NG+ PD +  + L D
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLID 449



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 13/161 (8%)

Query: 7   HLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           +L  ALK+F  ++  G   P+ ++Y+ +I G C + RL+EA  L +++     +P++ T+
Sbjct: 245 NLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTY 304

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T+LI A C  G +D A  +F +M+ +G K NV TY+ LIDG  +   ++ A  V  +M +
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVK 364

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + I P++             GR   A +L   M +    P+
Sbjct: 365 DGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPN 405



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ D GL PDI++YN +I G C    ++ A +L   +    L+P+ +TFT +I+
Sbjct: 425 AVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIIN 484

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-- 128
           AFCK+G+ D A+     ML KG   + VT + LIDG       + A  + E + +  +  
Sbjct: 485 AFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLT 544

Query: 129 ---SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS---SGS 171
              S N+         +  E + +   + + G++P  +  +TL D  ++S   SGS
Sbjct: 545 TPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGS 600



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K C L   L + G++   GL P ++TY T++ G      +  + ++ E +      P
Sbjct: 555 MLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLP 614

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N   +TI+I+  C+ GR+++A  + S M + G   N VTY+ ++ GY  +  +  A +  
Sbjct: 615 NVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETV 674

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIM 152
             M E     N         ++Y S+LR  ++
Sbjct: 675 RAMVERGYELND--------RIYSSLLRGFVL 698



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++   G+ P +ITYN +I GYC   R+  A +L   +     KPN  TF  L++  C+ G
Sbjct: 361 KMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVG 420

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
           +   A  +  +ML+ G   ++V+Y+ LIDG  +  +M  A+ +   M   ++ P+     
Sbjct: 421 KPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFT 480

Query: 133 --------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                    G+   A      MLR GI  D +  +TL D
Sbjct: 481 AIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLID 519



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   D A    G +  +G+  D +T  T+I G C++ +  +A+ + E L  +++     
Sbjct: 488 KQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPH 547

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +  +++D   K  ++ +   M  K+ + G   +VVTY+ L+DG  +S ++  +F + E M
Sbjct: 548 SLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELM 607

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             +   PN+             GR  EA +L  +M  +G+ P+
Sbjct: 608 KLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPN 650



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI+   +  + ++   +   G  P++  Y  II G C   R++EA +L   +    + PN
Sbjct: 591 LIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPN 650

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--------- 112
            +T+T+++  +   G++D A      M+E+G + N   YS L+ G+  SQ          
Sbjct: 651 HVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPEC 710

Query: 113 MKSAFDVYEEMCENNISPNI--------AGRPTEAMQLYDSMLRNGI 151
           +K    V E++  +     I         GR  E+  L  ++L++G+
Sbjct: 711 IKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGV 757



 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I +  +++A CK G  + A M   K+L+ G   +    + L+ G+ +  N++ A  V++ 
Sbjct: 196 IDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDL 255

Query: 123 MCE------NNISPNI-------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLADYN 165
           M        N++S +I        GR  EA  L D M   G  P      +L+  L D  
Sbjct: 256 MSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315

Query: 166 L 166
           L
Sbjct: 316 L 316


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 79/125 (63%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  + KLF  L   G+ PD+ITY+T+I GYC   ++D A++L   +  V LKP+
Sbjct: 297 LCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPD 356

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T++ LI+ +CK  RM+DA  +F +M   G   +++TY+ ++ G F+++   +A ++Y 
Sbjct: 357 SVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYA 416

Query: 122 EMCEN 126
            + E+
Sbjct: 417 RITES 421



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITY-----------------------------------NTIIC 35
           A K+F  +  RGL+PDI TY                                   N +IC
Sbjct: 131 ARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILIC 190

Query: 36  GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
            Y    ++DE V +F K+    L PN++ +  +ID  CK GR+DDA + F +M++KG   
Sbjct: 191 AYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTP 250

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLY 143
           NVV Y+ LI         + A ++  E+ +  I+PNI             GR  E+ +L+
Sbjct: 251 NVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLF 310

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D +   G+ PD +  STL D
Sbjct: 311 DLLGHIGVNPDVITYSTLID 330



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 78/124 (62%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++ D+G+ P+I+ +NTI+   C   R+ E+ +LF+ L  + + P+ IT++ L
Sbjct: 269 EKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTL 328

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD A  + + M+  G K + VTYS LI+GY K   M+ A  +++EM  N +
Sbjct: 329 IDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGV 388

Query: 129 SPNI 132
           +P+I
Sbjct: 389 NPDI 392



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A+  F Q+ D+GL P+++ Y ++I   C+ ++ ++A +L  ++    + PN
Sbjct: 227 LCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPN 286

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  ++D+ CKEGR+ ++  +F  +   G   +V+TYS LIDGY  +  M  A  +  
Sbjct: 287 IVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLT 346

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
            M    + P+       I G     R  +A+ L+  M  NG+ PD
Sbjct: 347 GMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPD 391



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D  + +F ++  +GL P+ + Y T+I G C L RLD+A+  FE++    L PN +
Sbjct: 194 KQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVV 253

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI A C   + + A  +  ++L++G   N+V ++ ++D   K   +  +  +++ +
Sbjct: 254 VYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLL 313

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               ++P++            AG+   AM+L   M+  G+ PD +  STL
Sbjct: 314 GHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTL 363



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 27/160 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A   + ++ DR + PD +TYN+II        +D A+++      V + PN
Sbjct: 21  LFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVL----TVMVMPN 76

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++  +C  G+ + A  +F KM   G + +VVTY+ L+D                
Sbjct: 77  CFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMD---------------- 120

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +C+N       G+ TEA +++DSM++ G+ PD     TL
Sbjct: 121 YLCKN-------GKCTEARKIFDSMVKRGLKPDITTYGTL 153



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 19/167 (11%)

Query: 16  GQLTDRGLE-------PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
            Q  DR +E       P+  TYN+I+ GYCS  + ++A+ +F K+    ++P+ +T+  L
Sbjct: 59  AQAMDRAMEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSL 118

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +D  CK G+  +A  +F  M+++G K ++ TY  L+ GY     +    D+   M +N +
Sbjct: 119 MDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM 178

Query: 129 SP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  NI         +  E + ++  M + G+ P+ +   T+ D
Sbjct: 179 QLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVID 225



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 68/114 (59%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+KL   +   GL+PD +TY+T+I GYC +NR+++A+ LF+++    + P+ IT+ I
Sbjct: 338 MDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNI 397

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++    +  R   A  +++++ E G +  + TY+ ++  + K+ ++   F  + 
Sbjct: 398 ILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSLMMHFGCFR 451



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 47/202 (23%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT---- 64
           + A+ +F ++   G+EPD++TYN+++   C   +  EA ++F+ +    LKP+  T    
Sbjct: 94  EKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTL 153

Query: 65  -------------------------------FTILIDAFCKEGRMDDATMMFSKMLEKGP 93
                                          F ILI A+ K+ ++D+  ++FSKM ++G 
Sbjct: 154 LHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGL 213

Query: 94  KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQ 141
             N V Y  +IDG  K   +  A   +E+M +  ++PN+              +  +A +
Sbjct: 214 TPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEE 273

Query: 142 LYDSMLRNGIMPDGLLLSTLAD 163
           L   +L  GI P+ +  +T+ D
Sbjct: 274 LIFEILDQGINPNIVFFNTILD 295


>gi|356574119|ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI+   L+ AL+LF  L  RG  PD++  N ++ G C   R+ EA +L +++      P+
Sbjct: 582 LIQIQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPS 641

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LID++CK G +D A  + S+M  +  + NV+TYS L+DG+ +++    A  V+ 
Sbjct: 642 VVTYNLLIDSWCKNGSVDKAMALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWN 701

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD-----GLLLSTLADY 164
           EM      PN       I G     RPT A+     M +  + PD      L+ S L+D 
Sbjct: 702 EMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQKDMKPDSFIYIALISSFLSDM 761

Query: 165 NLQSS 169
           +L S+
Sbjct: 762 DLASA 766



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A      +  +G  PDI++Y+  I G   +  L+ A+QLF  L      P+ +   IL+ 
Sbjct: 556 ACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILMR 615

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK  R+ +A  +  +++ KG   +VVTY+ LID + K+ ++  A  +   M   +  P
Sbjct: 616 GLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMSGEDREP 675

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+            A RP +A+ +++ M R G  P+ +    L
Sbjct: 676 NVITYSTLVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMAL 718



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+ L  +++    EP++ITY+T++ G+C   R D+A+ ++ ++      PN I
Sbjct: 654 KNGSVDKAMALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNEMERKGCFPNQI 713

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  LI   CK  R   A     +M +K  K +   Y  LI  +    ++ SAF++++EM
Sbjct: 714 AFMALIYGLCKCCRPTTALHYLREMEQKDMKPDSFIYIALISSFLSDMDLASAFEIFKEM 773

Query: 124 CENNISP 130
             +   P
Sbjct: 774 VYSGYFP 780



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   LD AL LF  +      P ++ YN +I   C  NRL+E+ +L  ++    ++P 
Sbjct: 442 LLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESRELLREMKESGVEPT 501

Query: 62  SITF-----------------------------------TILIDAFCKEGRMDDATMMFS 86
             T+                                   T+L+   C  G   +A     
Sbjct: 502 HFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELCDHGMAIEACNFLD 561

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-----CENNISPNI-------AG 134
            M+++G   ++V+YS  I G  + Q +  A  ++ ++     C + ++ NI       A 
Sbjct: 562 SMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILMRGLCKAY 621

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           R  EA +L D ++  G  P  +  + L D
Sbjct: 622 RVREAEKLLDEIVVKGFFPSVVTYNLLID 650



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 1/127 (0%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             D AL+++  + ++G   D    + +   +     +D+A +L E++    ++ N  TF 
Sbjct: 223 RFDEALRVYNVMREKGWV-DGHVCSMLALSFSKWGDVDKAFELVERMEGHGMRLNEKTFC 281

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI  F KEGR+D A  +F  M   G    V  +  LI G  ++ +   A  +  EM E 
Sbjct: 282 VLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEF 341

Query: 127 NISPNIA 133
            ++P++ 
Sbjct: 342 GVTPDVG 348



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++   G+  +  T+  +I G+    R+D A+QLF+ +  V   P    F +
Sbjct: 258 VDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDV 317

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
           LI   C+ G    A  + S+M E G   +V  ++ LI  +
Sbjct: 318 LIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFTKLISAF 357



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 19/173 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L +E H      LF ++  +GL  P+   YN ++        +D      E++     + 
Sbjct: 152 LAREAH-----HLFDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGFGWEF 206

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  T T L+ A+C   R D+A  +++ M EKG     V  S L   + K  ++  AF++ 
Sbjct: 207 DKFTLTPLLQAYCNARRFDEALRVYNVMREKGWVDGHVC-SMLALSFSKWGDVDKAFELV 265

Query: 121 EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M  + +  N              GR   A+QL+D M R G  P   L   L
Sbjct: 266 ERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVL 318



 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 18/165 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +D AL+LF  +   G  P +  ++ +I G C       A+ L  ++    + P+
Sbjct: 287 FVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPD 346

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN-----VVTYSCLIDGYFKSQNMKSA 116
              FT LI AF   G       + +K+LE+ P        V+ Y+ ++  Y     M  A
Sbjct: 347 VGIFTKLISAFPDRG-------VIAKLLEEVPGGEEERTLVLIYNAVLTCYVNDGLMDEA 399

Query: 117 FDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 M ++  S ++       M  + + ++  + P+G   S +
Sbjct: 400 CRFLRMMIQSKASGDV------QMDGFFNKVKKLVFPNGASFSIV 438


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 137 KEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVY 196

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI+  CKE +MD+A  +F +ML  G     VT++ LIDG+ K+  +  A ++Y++M
Sbjct: 197 TYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQM 256

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ++ P++             G   +A  L   M   G  PD +  +TL D
Sbjct: 257 LSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLID 308



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF ++   GL P  +T+ T+I G+C   R+D A+++++++    L P+
Sbjct: 205 LCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 264

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK+G +  A ++  +M  KG K + +TY+ LIDG  K  ++ +AF+  +
Sbjct: 265 LITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRK 324

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M + NI   ++A           GR  +A ++   ML  G  PD
Sbjct: 325 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPD 369



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A  L  +++ +G +PD ITY T+I G C    LD A +  +++    ++ +
Sbjct: 275 LCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C+EGR  DA  M  +ML  G K +  TY+ +I+ + K  ++ +   + +
Sbjct: 335 DVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLK 394

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 395 EMQRDGHVPSVV 406



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 100 LMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPS 159

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L+  + + G +D+   + S M   G + +V TYS LI+G  K   M  A ++++
Sbjct: 160 VVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFD 219

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + P               GR   AM++Y  ML   ++PD +  +TL  Y L   
Sbjct: 220 EMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI-YGLCKK 278

Query: 170 G--SQEHCI 176
           G   Q H +
Sbjct: 279 GBLKQAHVL 287



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 56/103 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A +   ++    +  D + Y  +I G C   R  +A ++  ++  V  KP++ 
Sbjct: 312 KEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTR 371

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+T++I+ FCK+G +   + +  +M   G   +VVTY+ L++G
Sbjct: 372 TYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 13/177 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F ++ D+ L+P++I+Y+T+I   C    +  A++ F  +T V L PN  T++ LID
Sbjct: 221 AFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLID 280

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK G + +A M+  +ML++    N+VTY+ L+DG  +   M  A +++  M +  ++P
Sbjct: 281 ANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTP 340

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           N+                 +AM+L++ M    I PD LL  T+  + L S    E C
Sbjct: 341 NLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIV-WGLCSESKLEEC 396



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  LF Q+   GL PDI+TYNT+I GY  +  LDE+V LFE++  +  +P+ I
Sbjct: 144 KEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVI 203

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI++FCK   M  A   F +M +K  K NV++YS LID   K   M+ A   + +M
Sbjct: 204 TYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDM 263

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + PN             AG   EA  L D ML+  +  + +  +TL D
Sbjct: 264 TRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLD 315



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   +D A++LF ++ ++ ++PDI+ + TI+ G CS ++L+E   +  ++    +  N 
Sbjct: 353 IKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANP 412

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + +T L+DA+ K G   +A  +  +M + G +  VVT+  LIDG  K   ++ A   +  
Sbjct: 413 VIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGR 472

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M ++++ PN+A                +A +L+D M    ++PD +  + + D NL+   
Sbjct: 473 MPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGN 532

Query: 171 SQE 173
            QE
Sbjct: 533 FQE 535



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D +   F  +   G+ P + TYN +I   C    +  A  LFE++  + L P+ +T+  L
Sbjct: 114 DLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTL 173

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID + K G +D++  +F +M   G + +V+TY+ LI+ + K + M  AF+ + EM + ++
Sbjct: 174 IDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDL 233

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN+    T             A++ +  M R G++P+    S+L D N ++    E
Sbjct: 234 KPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGE 290



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A+K F  +T  GL P+  TY+++I   C    L EA  L +++    +  N
Sbjct: 247 LCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLN 306

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L+D  C+EG M++A  +F  M + G   N+  Y+ LI G+ K ++M  A +++ 
Sbjct: 307 IVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFN 366

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM E +I P+I              +  E   +   M  +GI  + ++ +TL D   ++ 
Sbjct: 367 EMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAG 426

Query: 170 GSQE 173
              E
Sbjct: 427 NRTE 430



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ D G E  ++T+  +I G C    + EA+  F ++    L+PN   +T LID
Sbjct: 431 AINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALID 490

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   + DA  +F +M +K    + + Y+ +IDG  K  N + A ++  +M E  I  
Sbjct: 491 GLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIEL 550

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G+  +A +    M+  GI+PD  L + L
Sbjct: 551 DLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRL 593



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+  FG++ D  L+P++  Y  +I G C  N + +A +LF+++    + P+
Sbjct: 457 LCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPD 516

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T +ID   K G   +A  M +KM+E G + ++  Y+ L+ G  +   ++ A     
Sbjct: 517 KIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLA 576

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIM 152
           EM    I P+              G   EA++L + ++  G++
Sbjct: 577 EMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLI 619



 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P    ++ +      L  L+ A Q F ++T  ++ P + +    +    K G  D +   
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
           F  M+  G    V TY+ +I    K  +M +A  ++E+M +  ++P+I            
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            G   E++ L++ M   G  PD +  + L
Sbjct: 180 IGLLDESVCLFEEMKFMGCEPDVITYNAL 208


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K   ++ + G +PDI+TYNT+I  YC   RLD+A  L++ +    + P+ +++T L++  
Sbjct: 324 KFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL 383

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           CKEGR+ +A  +F +M+ +G   ++VTY+ LI GY K   M+ +  +  +M  N ISP+
Sbjct: 384 CKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPD 442



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            L+ F ++   G  P +IT N ++ G   LN  D   +++E++    + PN  TF IL  
Sbjct: 252 GLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTH 311

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G          KM E+G   ++VTY+ LI+ Y +   +  AF +Y+ M    + P
Sbjct: 312 VLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVP 371

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             GR  EA QL+  M+  G+ PD +  +TL
Sbjct: 372 DLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 414



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  + D   +++ ++   G+ P++ T+N +    C      +  +  EK+      P+
Sbjct: 278 LLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPD 337

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+++C++GR+DDA  ++  M  +G   ++V+Y+ L++G  K   ++ A  ++ 
Sbjct: 338 IVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFH 397

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    +SP+I             G+  E+  L   M+ NGI PD      L +
Sbjct: 398 RMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVE 451



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  LD A  L+  +  RG+ PD+++Y  ++ G C   R+ EA QLF ++    L P+ +
Sbjct: 350 RKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIV 409

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  +CKEG+M ++  +   M+  G   +  T   L++GY K     SA ++  E+
Sbjct: 410 TYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVEL 469

Query: 124 CENNIS 129
               +S
Sbjct: 470 QRFGVS 475



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A +LF ++  RGL PDI+TYNT+I GYC   ++ E+  L   +    + P+
Sbjct: 383 LCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPD 442

Query: 62  SIT-----------------------------------FTILIDAFCKEGRMDDATMMFS 86
           S T                                   ++ LI A C+E R   A  +  
Sbjct: 443 SFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLE 502

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M + G K  +  Y+ LI  + +   +  A  +  EM +  I PN+A             
Sbjct: 503 RMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLS 562

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  E   L   M+ +G +PD
Sbjct: 563 RSMEGESLVGEMVASGXLPD 582



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D + ++ ++  Y  + R+ E ++ F ++  V   P  IT   L++   K    D    ++
Sbjct: 232 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 291

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            +M   G   N+ T++ L     K  +        E+M E    P+I             
Sbjct: 292 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRK 351

Query: 134 GRPTEAMQLYDSMLRNGIMPD 154
           GR  +A  LY  M R G++PD
Sbjct: 352 GRLDDAFYLYKIMYRRGVVPD 372



 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E    AA  L  +++  G + ++  YN +I  +C  + + EA+ L  ++   ++KPN
Sbjct: 488 LCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPN 547

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
             T+  +J    +  R  +   +  +M+  G   ++     L  GY +  ++  A     
Sbjct: 548 LATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGYCRENDIDKAESLLS 607

Query: 117 FDVYEEMCENNISPNIAGRPTEA-------MQLYDSMLRNGIMPDGLLLSTLAD 163
           F   E    +  S N   R T A       +++ D ML+ G++P+ L    + D
Sbjct: 608 FXAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLTCKYVID 661


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+ L  ++  +G   D++TYNTI+ G C    L EA +LF ++T   L P+S T TI
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G + +A  +F KM EK  + +VVTY+ L+DG+ K  ++ +A +++ +M    
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I P               G   EA +++D M+   I P  ++ +++
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSM 591



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KLF ++T+R L PD  T   +I G+C L  L  A++LF+K+   +++ +
Sbjct: 455 LCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLD 514

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D F K G +D A  +++ M+ K      ++YS L++      ++  AF V++
Sbjct: 515 VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWD 574

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   NI P +            +G  ++     + M+  G +PD +  +TL
Sbjct: 575 EMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCK 74
           ++   G  PD I+YNT+I G+     + +A  L +K+   Q  L P+  T+  ++  FC+
Sbjct: 610 KMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCR 669

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           + +M +A ++  KM+E+G   +  TY+C+I+G+    N+  AF +++EM +   SP+
Sbjct: 670 QNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++       Q+ ++G+ PDI+TYNT+I  Y S   ++EA +L   +      P 
Sbjct: 245 LCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPG 304

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+  CK G+ + A  +F++ML  G   +  TY  L+    K  ++     V+ 
Sbjct: 305 VYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS 364

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M   ++ P++            +G   +A+  ++S+   G++PD ++ + L
Sbjct: 365 DMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTIL 416



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 14/162 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A +++ ++  + ++P ++  N++I GYC      +     EK+      P+ I++ 
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYN 624

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            LI  F +E  M  A  +  KM E+  G   +V TY+ ++ G+ +   MK A  V  +M 
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMI 684

Query: 125 ENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           E  ++P+       I G       TEA +++D ML+ G  PD
Sbjct: 685 ERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+F  +  R + PD++ +++++  +     LD+A+  F  +    L P+++ +TILI  +
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C++G +  A  + ++ML++G   +VVTY+ ++ G  K + +  A  ++ EM E  + P+ 
Sbjct: 421 CRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDS 480

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                        G    AM+L+  M    I  D +  +TL D
Sbjct: 481 YTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523



 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   L  A + F  L  +G    I   N +I     +  ++ A  ++++++   +  N 
Sbjct: 176 VQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINV 235

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  I+++A CK+G+M+      S++ EKG   ++VTY+ LI  Y     M+ AF++   
Sbjct: 236 YTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNA 295

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M     SP +             G+   A +++  MLR+G+ PD     +L
Sbjct: 296 MPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 346



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A ++F ++   GL PD  TY +++   C    + E  ++F  +    + P+
Sbjct: 315 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPD 374

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++  F + G +D A M F+ + E G   + V Y+ LI GY +   +  A ++  
Sbjct: 375 LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRN 434

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +   + ++    T            EA +L++ M    + PD   L+ L D
Sbjct: 435 EMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILID 488



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 14/161 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +++  +  + + P  I+Y+ ++   CS   L EA ++++++    +KP  +    
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNS 590

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           +I  +C+ G   D      KM+ +G   + ++Y+ LI G+ + +NM  AF + ++M E  
Sbjct: 591 MIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQ 650

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             + P++              +  EA  +   M+  G+ PD
Sbjct: 651 GGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   ++ A  ++ +++  G+  ++ T N ++   C   ++++      ++    + P+
Sbjct: 210 LVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPD 269

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI A+  +G M++A  + + M  KG    V TY+ +I+G  K    + A +V+ 
Sbjct: 270 IVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFA 329

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  + +SP+              G   E  +++  M    ++PD +  S++
Sbjct: 330 EMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSM 381


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 94/167 (56%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D  ++L  Q+ + G  PD+ITY T+I G+C    +DEAV L + +     KPN+I++TI
Sbjct: 352 VDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTI 411

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C   R  DA  + S+M+++G   N VT++ +I+   K   ++ A ++ ++M  N 
Sbjct: 412 VLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNG 471

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            +P++            AG+  EA++L + M+  GI P+ +  S++A
Sbjct: 472 CNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMA 518



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE H + A ++  ++   GL+P+++ YNT++ G CS +R ++A +L  ++       + +
Sbjct: 278 KEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDV 337

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF IL+D FC+ G +D    +  +MLE G   +V+TY+ +I+G+ K   +  A  + + M
Sbjct: 338 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNM 397

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN               R  +A +L   M++ G +P+ +  +T+ ++
Sbjct: 398 PSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINF 450



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 22/176 (12%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-------LDEAVQLFEKLTCVQ--- 57
           +D  L++  +L   G E DI++YN ++ G C+  R       +DE V++ E L+ +    
Sbjct: 202 VDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHG 261

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             P+   +  +ID  CKEG  + A  + S+M   G K NVV Y+ ++ G   +   + A 
Sbjct: 262 CTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAE 321

Query: 118 DVYEEMCENN-----ISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++  EM + N     ++ NI        G     ++L + ML +G MPD +  +T+
Sbjct: 322 ELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTV 377



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + +EA++L   +    + PN
Sbjct: 451 LCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPN 510

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ +  A  +EGR+D    MF  + +   +++ V Y+ +I    K +    A D   
Sbjct: 511 VITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLA 570

Query: 122 EMCENNISPN 131
            M  N   PN
Sbjct: 571 YMVSNGCMPN 580



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + AL+L   + ++G+ P++ITY+++        R+D+ +Q+F+ +    ++ +
Sbjct: 486 LGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSD 545

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  +I + CK    D A    + M+  G   N  TY+ LI G      +  A D+  
Sbjct: 546 AVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLS 605

Query: 122 EMC 124
           E+C
Sbjct: 606 ELC 608



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++ YN ++ GYC + +++ A +L      V + PN+ T+  ++   C  GR+ DA  +  
Sbjct: 84  VVDYNAMVAGYCRVGQVEAARRLA---AAVPVPPNAYTYFPVVRGLCGRGRIADALAVLD 140

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +M  +        Y  +I+   +S    SA  V E +
Sbjct: 141 EMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEAL 177



 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 40/90 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +D  +++F  + D  +  D + YN +I   C     D A+     +      PN
Sbjct: 521 LAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPN 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK 91
             T+T LI     EG + +A  + S++  +
Sbjct: 581 ESTYTALIKGLASEGLLCEAQDLLSELCSR 610



 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +  ++T R   P    Y+ II   C       A+++ E L       ++    ++I+
Sbjct: 135 ALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVIN 194

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C +G +D+   M  K+   G +A++V+Y+ ++ G   ++      ++ +EM       
Sbjct: 195 AICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEM------- 247

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  +  +    M ++G  PD  + +T+ D
Sbjct: 248 ------VKVHEALSQMAQHGCTPDIRMYATIID 274


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A+ L  ++ +R L P +ITYN++I G C +N L+ A +L   +    L P+
Sbjct: 414 LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPD 473

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++ ID  CKEGR+++A  +F  +  KG KAN V Y+ LIDGY K   +  A+ + E
Sbjct: 474 QWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLE 533

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
            M  +   PN       I G     +  EA  L   ML  G+ P
Sbjct: 534 RMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP 577



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A K+  +++++GL P ++TYN +I GYC    +D+A ++ + +      PN
Sbjct: 344 LCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPN 403

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI   CK+ ++  A  + +KMLE+    +++TY+ LI G  K  +++SA+ +  
Sbjct: 404 TRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLS 463

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M EN + P+              GR  EA  L+DS+   G+  + ++ + L D
Sbjct: 464 LMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALID 517



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ ALKLF  +T+    P + TY  +I       R  EA+ LF ++     +PN  T+T
Sbjct: 279 RINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYT 338

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LID  CKE +MD+A  M S+M EKG   +VVTY+ LIDGY K   +  AF++ + M  N
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN 398

Query: 127 NISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  PN       I G     +  +AM L + ML   + P  +  ++L
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A  LF  +  +G++ + + Y  +I GYC + ++D A  L E++      PN
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T+ +LI+  CKE +M +A+ + +KML  G K  VVTY+ LI    K      A  V+ 
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P++             G   E   +   M   GI+PD +  + L D
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLID 657



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D    ++ +L +  + P+I T+N ++ GYC +  + EA     K+    L P++ T+T 
Sbjct: 175 IDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTS 234

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+   +D+A  +F  M +KG + N V+Y+ LI G  ++  +  A  ++ +M E+N
Sbjct: 235 LILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDN 294

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P +            +GR  EA+ L++ M   G  P+    + L D
Sbjct: 295 CCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLID 342



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++F  +  +G + + ++Y  +I G C   R++EA++LF  +T     P   T+T+
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A    GR  +A  +F++M EKG + NV TY+ LIDG  K   M  A  +  EM E  
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           + P++         L D   + G++ D   +  L + N
Sbjct: 365 LIPSVVTYNA----LIDGYCKEGMIDDAFEILDLMESN 398



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 68/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  L  ++   G++P ++TY  +I         D A+++F  +  +  +P+
Sbjct: 554 LCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPD 613

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T  + A+  +G +++   + +KM E+G   ++VTY+ LIDGY +      AFD  +
Sbjct: 614 VCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLK 673

Query: 122 EMCENNISPNI 132
            M +    P++
Sbjct: 674 CMVDTGCKPSL 684



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 65/217 (29%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K+   D ALK+F  +   G +PD+ TY   +  Y S   L+E   +  K+    + P+
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 62  SITFTILIDAFCK-----------------------------------EGRMDD------ 80
            +T+T+LID + +                                   E RM +      
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 81  ------------ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
                       A  +F KM+E G   +V  Y  LI G+ + + ++ A  +   M E  +
Sbjct: 709 IDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGM 768

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           SP+              G   EA++L D+M+ NG++P
Sbjct: 769 SPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLP 805



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 16/177 (9%)

Query: 11  ALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            L++F ++   G    +P +  YNTI+        +DE   ++ +L   Q+ PN  TF  
Sbjct: 140 VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY----EEM 123
           +++ +CK G + +A +  SK+++ G   +  TY+ LI G+ +++ + +A++V+    ++ 
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 124 CENN-IS-PNI------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           C+ N +S  N+      AGR  EA++L+  M  +   P  +   T+  Y L  SG +
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPT-VRTYTVLIYALSGSGRK 315



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALKLF ++ + G   D+  Y  +I G+C   RL+EA  L   +    + P+   +  L
Sbjct: 719 EIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSL 778

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF---KSQNMKSAFDV------ 119
           +D  CK G   +A  +   M+E G    + +Y  L+ G +    ++  K+ F        
Sbjct: 779 LDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGY 838

Query: 120 -YEEMCENNISPNIAGRPT--EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            Y+E+    +   +  R    E  +L D M   G  P+ L  S L +
Sbjct: 839 NYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIE 885



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L   + + GL P + +Y  ++CG       ++A  +F  L       + + + +LID
Sbjct: 791 AVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLID 850

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
              K   +D+ + +   M EKG + N +TYS LI+G
Sbjct: 851 GLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEG 886



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A  L   + +RG+ P    YN+++   C L    EAV+L + +    L P   ++ 
Sbjct: 752 RLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYK 811

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L+     EG  + A  +F  +L  G   + V +  LIDG  K   +    ++ + M E 
Sbjct: 812 LLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEK 871

Query: 127 NISPN 131
              PN
Sbjct: 872 GCQPN 876


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   ++    L+ ++  RG +P+ ITYN +I      NRLD+A+ L+  L      P   
Sbjct: 837  KSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPC 896

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            TF  LID   K GR+DDA  MF  M+  G + N   Y+ L++GY K  ++ +A + ++ M
Sbjct: 897  TFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRM 956

Query: 124  CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             +  I P+            IAGR  +A+  ++ + + G+ PD      L  YNL  +G
Sbjct: 957  VKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPD------LVAYNLMING 1009



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K   LD A ++F  +   G  P+   YN ++ GY  L  +D A + F+++    ++P+
Sbjct: 905  LLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPD 964

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++TIL+D  C  GR+DDA   F K+ + G   ++V Y+ +I+G  +SQ  + A  ++ 
Sbjct: 965  LKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFH 1024

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            EM    I P+            I G   EA ++Y+ +   G+ P+
Sbjct: 1025 EMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPN 1069



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 12/181 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L ++  +D A ++  ++ D G  PD++TY  +I   C+  +LD+A+ LF K+     KP
Sbjct: 273 VLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKP 332

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  L+D F   G +D    ++++M   G   +VVT++ L++   K+  +  AFD+ 
Sbjct: 333 DKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLL 392

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           + M +  + PN+            A R  +A+ L+ +M   G+ P       L DY+ +S
Sbjct: 393 DTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKS 452

Query: 169 S 169
            
Sbjct: 453 G 453



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HLD   K++ ++   G  PD++T+  ++   C   R++EA  L + +    + PN  T+ 
Sbjct: 349 HLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYN 408

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI    +  R+DDA  +FS M   G +    TY  LID + KS +   A + +E+M   
Sbjct: 409 TLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKAR 468

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
            I+PNI             GR  EA  +++ +  +G+ PD +
Sbjct: 469 GIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSV 510



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  H   AL+ F ++  RG+ P+I+  N  +     + RL EA  +F +L    L P+S+
Sbjct: 451 KSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSV 510

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +++  + K G++D+A  + S+M +   + +V+  + LID  +K+  ++ A+ ++  M
Sbjct: 511 TYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRM 570

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E N++P +             G+  +A+QL++SM  +G  P+ +  +TL D
Sbjct: 571 EEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLD 622



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++   + L  ++   GL P+I TY   I       ++DEA ++ +++      P+ +
Sbjct: 241 KRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVV 300

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T+LIDA C   ++DDA  +F+KM     K + VTY  L+D +    ++     ++ EM
Sbjct: 301 TYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEM 360

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             +  +P++            AGR  EA  L D+M + G++P+      L  YN   SG
Sbjct: 361 EADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPN------LHTYNTLISG 413



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           +L K      A  +F + T   G++P +  YN +I G+  ++ ++ A  LFE++      
Sbjct: 763 VLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCA 822

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P++ T+  LIDA  K G++++   ++ +ML +G K N +TY+ +I    KS  +  A D+
Sbjct: 823 PDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDL 882

Query: 120 YEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           Y  +   + SP              +GR  +A +++D M+  G  P+  + + L +
Sbjct: 883 YYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVN 938



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 69/122 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A ++F ++ +  L P ++TYN ++ G     ++ +AVQLFE +      PN
Sbjct: 554 LYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPN 613

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +ITF  L+D  CK   +D A  MF KM     + +V+T++ +I G+ K   +K+A  ++ 
Sbjct: 614 TITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFH 673

Query: 122 EM 123
           +M
Sbjct: 674 QM 675



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K   LD A+ L+  L      P   T+  +I G     RLD+A ++F+ +     +PN
Sbjct: 870  LVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPN 929

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            S  + IL++ + K G +D A   F +M+++G + ++ +Y+ L+D    +  +  A   +E
Sbjct: 930  SAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFE 989

Query: 122  EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
            ++ +  + P++              R  EA+ L+  M   GI+PD
Sbjct: 990  KLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPD 1034



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             +D AL  F +L   GL+PD++ YN +I G     R +EA+ LF ++    + P+  T+ 
Sbjct: 980  RVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYN 1039

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             LI      G +++A  ++ ++   G K NV TY+ LI GY  S N + A+ +Y++M   
Sbjct: 1040 SLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVG 1099

Query: 127  NISPN 131
               PN
Sbjct: 1100 GCDPN 1104



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  L   +  +G+ P++ TYNT+I G    NRLD+A+ LF  +  + ++P 
Sbjct: 379 LCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPT 438

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ +LID   K G    A   F KM  +G   N+V  +  +    +   +  A  ++ 
Sbjct: 439 AYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFN 498

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E+  + ++P+              G+  EA++L   M +    PD +++++L D  L  +
Sbjct: 499 ELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLID-TLYKA 557

Query: 170 GSQE 173
           G  E
Sbjct: 558 GRVE 561



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 68/129 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+KL  +++    EPD+I  N++I       R++EA Q+F ++  + L P  +
Sbjct: 521 KVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVV 580

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+    KEG++  A  +F  M   G   N +T++ L+D   K+  +  A  ++ +M
Sbjct: 581 TYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKM 640

Query: 124 CENNISPNI 132
              N  P++
Sbjct: 641 TTMNCRPDV 649



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%)

Query: 9    DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
            + AL LF ++ +RG+ PD+ TYN++I     +  ++EA +++E+L  + LKPN  T+  L
Sbjct: 1017 EEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNAL 1076

Query: 69   IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            I  +   G  + A  ++ KM+  G   N  T++ L
Sbjct: 1077 IRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D ALK+F ++T     PD++T+NTII G+   N++  A+ LF ++  + L+P+
Sbjct: 624 LCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPD 682

Query: 62  SITFTILIDAFCKEGRMDDA 81
            +T   L+    K G+++DA
Sbjct: 683 HVTLCTLLPGVIKSGQIEDA 702



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +  ++ G  +    ++A+   E+L C  +  +      +I   CK  +   A  +F K  
Sbjct: 722 WEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFT 781

Query: 90  -EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
            E G K  +  Y+ LIDG+ +  N++ A++++EEM     +P+             +G+ 
Sbjct: 782 KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKI 841

Query: 137 TEAMQLYDSMLRNGIMPD 154
            E   LYD ML  G  P+
Sbjct: 842 NELFDLYDEMLTRGCKPN 859



 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           Q+  R ++  +I + ++         L +A    EK+       N+ ++  LI    + G
Sbjct: 153 QIIRRNVDTYLIIFKSLFI----RGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSG 208

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133
              +A  ++ +M+ +G K ++ T+S L+    K +N+K+   + EEM    + PNI    
Sbjct: 209 FCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYT 268

Query: 134 ---------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                    G+  EA ++   M  +G  PD +  + L D
Sbjct: 269 ICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLID 307



 Score = 42.4 bits (98), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 22/164 (13%)

Query: 17  QLTDRGLEPDIITYNTII-----CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           ++ + G   +  +YN +I      G+C      EA++++ ++    LKP+  TF+ L+ A
Sbjct: 184 KMREAGFVLNAYSYNGLIHFLLQSGFCK-----EALEVYRRMVSEGLKPSLKTFSALMVA 238

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             K   +     +  +M   G + N+ TY+  I    +   +  A+ + + M ++   P+
Sbjct: 239 SGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPD 298

Query: 132 I------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +            A +  +AM L+  M  +   PD +   TL D
Sbjct: 299 VVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLD 342



 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 8    LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            ++ A K++ +L   GL+P++ TYN +I GY      + A  +++K+      PN+ TF  
Sbjct: 1051 IEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQ 1110

Query: 68   L 68
            L
Sbjct: 1111 L 1111


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 76/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A K+F  L  RG  PD  TY T+I GY +   +++A  L +++    L PN
Sbjct: 719 LCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPN 778

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  CK G +D A  +F K+  KG   NV++Y+ LIDGY K+ N + A D+  
Sbjct: 779 IITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRN 838

Query: 122 EMCENNISPNI 132
           +M +  ISP++
Sbjct: 839 KMLKEGISPSL 849



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 77/127 (60%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  L  ++  RGL P+IITYN +I G C    LD A +LF+KL    L PN I++ 
Sbjct: 759 NVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYN 818

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILID +CK G   +A  + +KML++G   +++TYS LI G+ K  +M  A ++ +EM E 
Sbjct: 819 ILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMREL 878

Query: 127 NISPNIA 133
               NIA
Sbjct: 879 FADQNIA 885



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K      AL L+  +  RG       +NT+I G+C + ++ EA + F ++  +  +P
Sbjct: 473 LLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEP 532

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  LID +CK G +++A  +  KM ++    ++  Y+ LI G FKS+  +   D+ 
Sbjct: 533 DGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLL 592

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            EMC   +SPN+             GR  +A   Y  M+  G  P+ ++ S + 
Sbjct: 593 SEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIV 646



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ + YN  I G C   ++D+A ++F  L      P++ T+  LI  +   G ++DA  +
Sbjct: 707 PNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSL 766

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +ML++G   N++TY+ LI+G  KS N+  A  +++++    ++PN+            
Sbjct: 767 RDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCK 826

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            G   EA+ L + ML+ GI P  +  S L
Sbjct: 827 NGNTREALDLRNKMLKEGISPSLITYSAL 855



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 75/128 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           + C +D A++L  ++ + GL  ++   N +I GYC   ++ EA +L  ++    L+P S 
Sbjct: 336 RVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESY 395

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++ L+D FC+EG +  A  ++++ML  G ++NVVT++ L+ G  +    + A  V+  M
Sbjct: 396 SYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLM 455

Query: 124 CENNISPN 131
            +  ++P+
Sbjct: 456 LKRGVTPD 463



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++C L+ A K+  ++    G+  D   Y  +I GYC + ++D+AV+L +++  V L+ N 
Sbjct: 300 RQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNL 359

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
                LI+ +CK G++ +A  +  +M++   +    +YS L+DG+ +   +  A  VY E
Sbjct: 360 FICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNE 419

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I  N+             G   +A+ ++  ML+ G+ PD +   TL D
Sbjct: 420 MLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLD 472



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 67/122 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A KLF +L  +GL P++I+YN +I GYC      EA+ L  K+    + P+
Sbjct: 789 LCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPS 848

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ LI  FCK+G M  AT +  +M E     N+  +  L++G+ K   +K    ++ 
Sbjct: 849 LITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVEGHVKCGEVKKIAKLHN 908

Query: 122 EM 123
            M
Sbjct: 909 MM 910



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL ++  +  RG+ PD ++Y T++     +     A+ L+  +       ++  F  +I+
Sbjct: 448 ALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMIN 507

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK  +M +A   F++M E G + + VTY  LIDGY K  N++ AF V E+M +  I P
Sbjct: 508 GFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILP 567

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I            + +  E M L   M   G+ P+ +   TL
Sbjct: 568 SIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTL 610



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 22/177 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A +L  ++ D  LEP+  +Y+T++ G+C    + +A+ ++ ++  V ++ N +
Sbjct: 371 KNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVV 430

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   L+   C+ G  +DA  ++  ML++G   + V+Y  L+D  FK      A  ++   
Sbjct: 431 THNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALW--- 487

Query: 124 CENNISPNIAGRPT-----------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N+I     GR T                 EA + ++ M   G  PDG+   TL D
Sbjct: 488 --NDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLID 542



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K       + L  ++  +GL P+++TY T+I G+C   RLD+A   +  +      PN
Sbjct: 579 LFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPN 638

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI---DGYFKSQNMKSAFD 118
            I  + ++ +  + GR+D+A M+  KM+      +   +  L    DG   SQ +    D
Sbjct: 639 VIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLD 698

Query: 119 VYEEMCE--NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              +     N++  NIA       G+  +A +++ S+L  G  PD     TL
Sbjct: 699 ESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTL 750



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 35/144 (24%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-------------------- 54
           F ++ + G EPD +TY T+I GYC L  ++EA ++ EK+                     
Sbjct: 522 FNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFK 581

Query: 55  --------------CVQ-LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
                         C++ L PN +T+  LI  +C EGR+D A   +  M+EKG   NV+ 
Sbjct: 582 SKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVII 641

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEM 123
            S ++   ++   +  A  + ++M
Sbjct: 642 CSKIVSSLYRLGRIDEANMLLQKM 665



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 61/122 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+++     A+ ++  +   G+ PD+ T + ++  YC    ++ AV   +++  +  + N
Sbjct: 193 LVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELN 252

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID     G M+ A M+   M E+G   N VT + LI GY +   ++ A  V  
Sbjct: 253 VVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLR 312

Query: 122 EM 123
           EM
Sbjct: 313 EM 314



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 61/121 (50%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F  +   G  P + + N ++           A+ +++ +  + + P+  T +I+++
Sbjct: 167 ALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVN 226

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+CK+G ++ A     +M   G + NVVTY+ LIDG     +M+ A  V + M E  I  
Sbjct: 227 AYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILR 286

Query: 131 N 131
           N
Sbjct: 287 N 287



 Score = 39.7 bits (91), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 43/90 (47%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++   G+ P +ITY+ +I G+C    + +A  L +++  +    N   F  L++
Sbjct: 833 ALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVE 892

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
              K G +     + + M    P A V+++
Sbjct: 893 GHVKCGEVKKIAKLHNMMHITIPCAGVISH 922


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 13/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++TY   + G C +  +D A  LFEK+    + PNS+T+   +D+  KEG M +AT +
Sbjct: 706 PNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDL 765

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             +ML KG  AN  TY+ LI G+ K   +  A  V  EM EN I P+             
Sbjct: 766 HHEML-KGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCR 824

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +G    A++L+D+MLR G+ PD +  + L
Sbjct: 825 SGDVGAAVELWDTMLRKGVEPDSVAFNLL 853



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 76/124 (61%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AA  L+ ++ + GLEP   T+ T+I GYC   ++++A +L+ ++   ++ P+  TFT 
Sbjct: 444 LSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTA 503

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C    M +A+ +F +M+E+  K   VTY+ +I+GY K+ NM  AF++ E+M  N 
Sbjct: 504 LIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNG 563

Query: 128 ISPN 131
           + P+
Sbjct: 564 LVPD 567



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A   FG++ + G+   I  YN++I G+C    L  A  L+ K+    L+P + 
Sbjct: 405 KRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTAT 464

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI  +CK+ +++ A  ++ +M EK    +V T++ LI G   +  M  A  +++EM
Sbjct: 465 TFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEM 524

Query: 124 CENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPD 154
            E  I P     N+       A    +A +L + ML NG++PD
Sbjct: 525 VERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPD 567



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A KL+ ++ ++ + P + T+  +I G CS N + EA +LF+++   ++KP  +
Sbjct: 475 KDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEV 534

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ++I+ +CK   MD A  +   ML  G   +  TY  LI G   +  + +A D  +++
Sbjct: 535 TYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDL 594

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + N+  N              GR TEA+     M++ GI  D +  + L D
Sbjct: 595 HKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLID 646



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ ++D+A  L  +L   G  P++  YN +I   C    LD+A  L++ +  + L  N
Sbjct: 333 LRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLN 392

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ILID+FCK G +D A   F +M+E G +  +  Y+ LI+G+ K  ++ +A  +Y 
Sbjct: 393 DVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYT 452

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           +M    + P        I+G     +  +A +LY  M    I P
Sbjct: 453 KMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAP 496



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 69/128 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++D A +L   +   GL PD  TY  +I G CS  R+  A    + L    LK N +
Sbjct: 545 KAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEM 604

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ L+  +C +GR+ +A     +M+++G   ++V ++ LIDG  K Q+MK  F + ++M
Sbjct: 605 CYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKM 664

Query: 124 CENNISPN 131
            +  + P+
Sbjct: 665 YDQGLRPD 672



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 82/200 (41%), Gaps = 46/200 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL    ++  RG+  D++ +  +I G      +     L +K+    L+P+S+ +T 
Sbjct: 619 LTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTS 678

Query: 68  LIDAF-----------------------------------CKEGRMDDATMMFSKMLEKG 92
           +IDA+                                   CK G +D A  +F KML   
Sbjct: 679 MIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTAN 738

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----NNISPNI-------AGRPTEAMQ 141
              N VTY C +D   K  NMK A D++ EM +    N  + NI        GR  EA +
Sbjct: 739 ISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATK 798

Query: 142 LYDSMLRNGIMPDGLLLSTL 161
           +   M  NGI PD +  ST+
Sbjct: 799 VLSEMTENGIFPDCITYSTI 818



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 22/171 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  A  L  ++  +GL  +  TYN +I G+C L RL EA ++  ++T   + P+
Sbjct: 753 LTKEGNMKEATDLHHEML-KGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPD 811

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ +I   C+ G +  A  ++  ML KG + + V ++ LI G   +  +  AF++  
Sbjct: 812 CITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRN 871

Query: 122 EMCENNISPN---------------------IAGRPTEAMQLYDSMLRNGI 151
           +M    + P                      + G    A++LY SML   +
Sbjct: 872 DMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSMLTRAV 922



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 64/121 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++   L ++GL+ D++TY T++ G+C + + D+ + L  ++  +   P     + L+D
Sbjct: 272 ALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVD 331

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K+G +D A  +  K+   G   N+  Y+ LI+   K +++  A  +Y+ M   N+  
Sbjct: 332 GLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPL 391

Query: 131 N 131
           N
Sbjct: 392 N 392



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           I+TYN +I G C    + EA+++ + L    LK + +T+  L+  FC+  + DD   + +
Sbjct: 253 IVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMN 312

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           +M+E G        S L+DG  K  N+ SA+D+  ++      PN+
Sbjct: 313 EMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNL 358



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++F +  + G++PD  T + +I   C L     A +    +   +   + +T+ +LI   
Sbjct: 204 EVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGL 263

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           CK G + +A  +   + EKG K +VVTY  L+ G+ + Q       +  EM E    P  
Sbjct: 264 CKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTE 323

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           A            G    A  L   + R G +P+  + + L +
Sbjct: 324 AAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALIN 366


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A +LF ++  RG+ P ++TYNT+I        + +A ++++++   Q+ PN
Sbjct: 153 LVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPN 212

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+T +I   C+EG + DA  +F  M E G + N  TY+ L+ G+ +  ++ SAF +Y+
Sbjct: 213 VITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQ 272

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E+  + + PN             A R +EA  ++  M R G+ P   + ++L D   +S 
Sbjct: 273 ELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSG 332

Query: 170 GSQE 173
            +QE
Sbjct: 333 DAQE 336



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L+ ++T  GL PD  T + ++ G C   ++  A +  E +    +  N+  +  LID
Sbjct: 337 ALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALID 396

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ G +++A    ++M E G + NVV+YS LIDG+ K   M+ A  +Y EM    I P
Sbjct: 397 EYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEP 456

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G    A + +  M+ NGI P+ + +S L D
Sbjct: 457 NVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVD 501



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 73/131 (55%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +E  +  A +LF  + + G+ P+  TYN ++ G+C  + ++ A  L+++L    L P
Sbjct: 222 VLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIP 281

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++ FT LID FCK  R  +A  MF  M   G    V  Y+ L+DG F+S + + A  +Y
Sbjct: 282 NAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLY 341

Query: 121 EEMCENNISPN 131
           +EM    + P+
Sbjct: 342 QEMTRLGLCPD 352



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 74/125 (59%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A +    + + G+  +   YN +I  YC    L+EA+    ++T V ++PN ++++
Sbjct: 368 QIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYS 427

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID   K G+M  A  ++++M+ KG + NVVTY+ LI G+ K+  + +AF  ++EM EN
Sbjct: 428 SLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIEN 487

Query: 127 NISPN 131
            ISPN
Sbjct: 488 GISPN 492



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 66/113 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +  +L+ AL    ++T+ G+EP++++Y+++I G+  L ++  A+ ++ ++    ++PN +
Sbjct: 400 RNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVV 459

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           T+T LI    K G +D A     +M+E G   N +T S L+DG  +   ++ A
Sbjct: 460 TYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDA 512



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 12/179 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K      A  +F  +   G+ P +  YN+++ G        EA+ L++++T + L P+  
Sbjct: 295 KAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEF 354

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T +I++   C  G++  A      + E G   N   Y+ LID Y ++ N++ A      M
Sbjct: 355 TCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRM 414

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            E  + PN+             G+   AM +Y  M+  GI P+ +  + L   + ++ G
Sbjct: 415 TEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGG 473



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL +F +L      P +   N ++ G     R   A +LF+++    + P+ +T+  
Sbjct: 127 LDEALYVFRRLWTL---PALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNT 183

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+A   +G +  A  M+ +M+ +    NV+TY+ +I    +   +  A  +++ M E  
Sbjct: 184 LINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAG 243

Query: 128 ISPN-------IAGR-----PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + PN       ++G         A  LY  +L +G++P+ ++ +TL D
Sbjct: 244 MRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLID 291



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ--------------- 48
           K   +DAA +   ++ + G+ P+ IT + ++ G C  NR+ +AV+               
Sbjct: 470 KNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHS 529

Query: 49  LFEKLTCVQ--LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            F   T  +  L PNS  +  LI     +G+  +A  +FS M + G  ++  TY+ LI G
Sbjct: 530 FFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRG 589

Query: 107 YFKSQNMKSAFDVYEEMCENNISP 130
                 + +A  +Y +M +  + P
Sbjct: 590 QCMLGYVLNAMMLYADMMKIGVKP 613


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 76/127 (59%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A+KL G +T RG +PD+ T+NT++  YC+L +++E   L +++    L+P+ +
Sbjct: 514 KDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIV 573

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  +ID  CK   +  A    ++++++G K NV  Y+ LI GY ++ ++  A D  E M
Sbjct: 574 SYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETM 633

Query: 124 CENNISP 130
             N I P
Sbjct: 634 KSNGIQP 640



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           +L DRGL+P++  YN +I GY     +  A+   E +    ++P ++T+  L+   C  G
Sbjct: 597 ELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAG 656

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----- 131
            +++A  +FS+  E      V+ Y+ +I GY K   M  A   +EEM    ISPN     
Sbjct: 657 LVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYT 716

Query: 132 -------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   +G   EA +L+D M+ +G++PD +   TL
Sbjct: 717 TLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTL 753



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A K+   + ++G+E D ITYN +I G C  ++++EA++L   +T    KP+  TF 
Sbjct: 482 YMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFN 541

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+ A+C  G+M++   +  +M  +G + ++V+Y  +IDG+ K+++++ A +   E+ + 
Sbjct: 542 TLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDR 601

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+             G  + A+   ++M  NGI P  +   +L
Sbjct: 602 GLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSL 648



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 19/178 (10%)

Query: 2   LIKECHLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L++   LDAA ++F ++ + R +  +  +Y  +I   C   ++D   ++  +L    L+P
Sbjct: 195 LVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQP 254

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             +T+ +L+DA CK GR+++A  +  +M + G   +VVT+  LI+G  + +       V 
Sbjct: 255 TVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVL 314

Query: 121 EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           +EM +  +SPN              G  ++A++L+D M+   + P      T   YNL
Sbjct: 315 QEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKP------TAVTYNL 366



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +DA  ++  +L   GL+P ++TYN ++   C   R++EA +L  ++    + P+
Sbjct: 231 LCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPS 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ILI+   +  R  +  ++  +M + G   N V Y+ LI  + +  +   A  +++
Sbjct: 291 VVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFD 350

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + P               G    A ++ + ML  G+     L +T+  + LQ +
Sbjct: 351 EMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRT 410

Query: 170 GSQEHCI 176
              E  +
Sbjct: 411 RRLESVV 417



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+     +   G++P  +TY +++   C    ++EA  +F +     +    I +TI
Sbjct: 623 ISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTI 682

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +CK G+M +A   F +M  +G   N +TY+ L+  Y KS N + A  +++EM  + 
Sbjct: 683 MIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSG 742

Query: 128 ISPN------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + P+      +  R +E   L   +     +  G L      YN+ S+G
Sbjct: 743 VIPDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTKDDRMYNILSNG 791



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 66/122 (54%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ ++ +  ++GL  ++ T N +I G C    + EA ++ + +    ++ +SIT+ I+I 
Sbjct: 451 AVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIR 510

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+ +M++A  +   M  +G K ++ T++ L+  Y     M+  F + ++M    + P
Sbjct: 511 GCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQP 570

Query: 131 NI 132
           +I
Sbjct: 571 DI 572



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   L++ + +  ++  RG+ P+       +   C   +  EAV ++ K     L  
Sbjct: 406 LLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGV 465

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  T   LI   C+   M +AT +   ML KG + + +TY+ +I G  K   M+ A  ++
Sbjct: 466 NLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLH 525

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +M      P++             G+  E   L D M   G+ PD +   T+ D
Sbjct: 526 GDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIID 580


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A K+F  +T RG+ P+ +TY  +I G C     D+A +LF ++      P+
Sbjct: 208 LYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPD 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+    L+D FCK GRM +A  +     + G    +  YS LIDG F+++    AF++Y 
Sbjct: 268 SVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYA 327

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M + NI P+I            AG+  +A++L  SM   GI PD
Sbjct: 328 NMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPD 372



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 13/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M+ +E     A  ++ ++      P++ T+  ++ G     R  +A ++F+ +T   + P
Sbjct: 172 MMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+TILI   C+ G  DDA  +F +M   G   + V ++ L+DG+ K   M  AF++ 
Sbjct: 232 NRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELL 291

Query: 121 EEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
               ++     + G            R T+A +LY +ML+  I PD ++L T+    L  
Sbjct: 292 RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPD-IILYTILIQGLSK 350

Query: 169 SGSQEHCI 176
           +G  E  +
Sbjct: 351 AGKIEDAL 358



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ ALKL   +  +G+ PD   YN +I   C    L+E   L  +++  +  P+
Sbjct: 348 LSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPD 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           + T TILI + C+ G + +A  +F+++ + G   +V T++ LIDG  KS  +K A
Sbjct: 408 ACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEA 462



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +      D G  PDI++YN +I G+C    +D A++L   L    L P+S+T+  LI+
Sbjct: 501 AYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLIN 560

Query: 71  AFCKEGRMDDATMMFSKM--LEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVY 120
              + GR ++A  +F         P    +++T+SC      + + +  AF+++
Sbjct: 561 GLHRVGREEEAFKLFYAKDDFRHSPAVYRSLMTWSC------RKRKVLVAFNLW 608



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 39/182 (21%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA---VQLFEKLTCV--------- 56
           D A KLF ++   G  PD + +N ++ G+C L R+ EA   ++LFEK   V         
Sbjct: 250 DDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSL 309

Query: 57  -----------------------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
                                   +KP+ I +TILI    K G+++DA  + S M  KG 
Sbjct: 310 IDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGI 369

Query: 94  KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMP 153
             +   Y+ +I        ++    +  EM E    P+          L  SM RNG++ 
Sbjct: 370 SPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTI----LICSMCRNGLVR 425

Query: 154 DG 155
           + 
Sbjct: 426 EA 427



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 17/168 (10%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD  T+  +IC  C    + EA ++F ++      P+  TF  LID  CK G + +A ++
Sbjct: 406 PDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLL 465

Query: 85  FSKMLEKGPKANVVTYSC----LIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
             KM    P +  +  S       D   +S ++  A+       +   SP+I        
Sbjct: 466 LHKMEVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLIN 525

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
               AG    A++L + +   G+ PD +  +TL +  L   G +E   
Sbjct: 526 GFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLIN-GLHRVGREEEAF 572



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 41  NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           N  D   Q  E+L    +  +S  F +LI A+ K G  + A   F +M E   + +V TY
Sbjct: 106 NGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTY 165

Query: 101 SCLIDGYFKSQN-MKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSML 147
           + ++    + +     AF VY EM + N SPN+             GR ++A +++D M 
Sbjct: 166 NVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMT 225

Query: 148 RNGIMPDGLLLSTL 161
             GI P+ +  + L
Sbjct: 226 GRGISPNRVTYTIL 239



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 39/161 (24%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----------------- 53
           A ++F ++   G  P + T+N +I G C    L EA  L  K+                 
Sbjct: 427 AEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGN 486

Query: 54  ----TCVQ----LK--------------PNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
               T V+    LK              P+ +++ +LI+ FC+ G +D A  + + +  K
Sbjct: 487 RSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLK 546

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           G   + VTY+ LI+G  +    + AF ++    +   SP +
Sbjct: 547 GLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAV 587



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALKL   L  +GL PD +TYNT+I G   + R +EA +LF      +  P    +  
Sbjct: 533 IDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSP--AVYRS 590

Query: 68  LIDAFCKEGRMDDATMMFSKMLEK 91
           L+   C++ ++  A  ++ K L+K
Sbjct: 591 LMTWSCRKRKVLVAFNLWMKYLKK 614



 Score = 38.9 bits (89), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC--LIDGYFKSQNMKSAFDVYEE 122
           +TI +   C+ GR  +A M+FS + EK  K  V   SC  LI G  K + + +A +V+  
Sbjct: 657 YTIWLIGLCQSGRFHEALMVFSVLREK--KILVTPPSCVKLIHGLCKREQLDAAIEVFLY 714

Query: 123 MCENNIS--PNIAG-------RPTEAM----QLYDSMLRNGIMPDGLLLSTLADYN 165
             +NN    P +           TE M    QL + M R G   D +L   +  Y+
Sbjct: 715 TLDNNFKLMPRVCNYLLSSLLESTEKMEIVSQLTNRMERAGYNVDSMLRFEILKYH 770


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 84/129 (65%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ + + AL+LF  L  + L PD++TYN++I G C    L +A +L++ +   ++ PN I
Sbjct: 414 RQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHI 473

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ILID+ C++G+++DA     +M++KG   N+ TY+ +I GY +S N+K      ++M
Sbjct: 474 TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 124 CENNISPNI 132
            ++N+ P++
Sbjct: 534 RQDNVFPDL 542



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A KL  ++ +RG+ PD+ T+ T+I GYC     + A+QLF+ L   +L+P+
Sbjct: 377 LCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPD 436

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  C++G +  A  ++  M  +    N +TYS LID + +   ++ AF   +
Sbjct: 437 VVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLD 496

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +    PNI            +G   +  Q    M ++ + PD +  +TL
Sbjct: 497 EMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTL 548



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA+ L   + +RGL+P I+TYN+++ G C   R D+A ++F  +    + P+  +F I
Sbjct: 208 VDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNI 267

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC+ G + +A   + +M  +    +VV++SCLI  + +   M  A     EM    
Sbjct: 268 LIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLG 327

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+             AG  +EA+++ D M+  G +PD +  +TL
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTL 373



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A     ++  +G  P+I TYN+II GYC    + +  Q  +K+    + P+ ITF 
Sbjct: 487 QVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFN 546

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  + KE  M  A  +F+ M ++  + + VTY+ +I+G+ +  NM+ A  V++ M ++
Sbjct: 547 TLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDS 606

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            I P+             AG   +A QL+D M+  G  PD
Sbjct: 607 GIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL++  ++   G  PD++TYNT++ G C  +RL +A +L  ++    + P+  TFT 
Sbjct: 348 MSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTT 407

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C++G  ++A  +F  +L +  + +VVTY+ LIDG  +  ++  A +++++M    
Sbjct: 408 LIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           I PN              G+  +A    D M++ G +P+
Sbjct: 468 ILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPN 506



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +  +   +D A     ++   GL PD + Y  +I G+C    + EA+++ +++      P
Sbjct: 306 LFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLP 365

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  L++  CK+ R+ DA  + ++M E+G   ++ T++ LI GY +  N ++A  ++
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLF 425

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + +    + P++             G   +A +L+D M    I+P+ +  S L D
Sbjct: 426 DTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILID 480



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A ++F  +    + PD+ ++N +I G+C +  + EAV+ ++++    + P+
Sbjct: 237 LCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPD 296

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F+ LI  F + G MD A     +M   G   + V Y+ +I G+ ++ +M  A  V +
Sbjct: 297 VVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRD 356

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM      P++              R  +A +L + M   G+ PD    +TL
Sbjct: 357 EMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTL 408



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A  +  ++  R + PD++T+N +I        +D A+ L + +    LKP  +
Sbjct: 169 KTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIV 228

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++   CK  R D A  +F  M +     +V +++ LI G+ +   +K A   Y+EM
Sbjct: 229 TYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEM 288

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               ++P++             G    A      M   G++PDG++ + +
Sbjct: 289 QHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMV 338



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E +  T N ++  YC     D A  +  ++    + P+ +T  +LIDA  + G +D A  
Sbjct: 154 EVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIA 213

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +   M  +G K  +VTY+ ++ G  K +    A +V+  M + +++P++           
Sbjct: 214 LVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFC 273

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             G   EA++ Y  M    + PD +  S L
Sbjct: 274 RVGEVKEAVKFYKEMQHRYVTPDVVSFSCL 303



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IKE ++  A  +F  +    + PD +TYN II G+     + +A ++F+ +    ++P+ 
Sbjct: 553 IKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDR 612

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            T+  LI+     G    A  +  +M+ +G
Sbjct: 613 YTYMSLINGHVTAGNSKQAFQLHDEMIHRG 642


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K   ++ + G +PDI+TYNT+I  YC   RLD+A  L++ +    + P+ +++T L++  
Sbjct: 279 KFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL 338

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           CKEGR+ +A  +F +M+ +G   ++VTY+ LI GY K   M+ +  +  +M  N ISP+
Sbjct: 339 CKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPD 397



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            L+ F ++   G  P +IT N ++ G   LN  D   +++E++    + PN  TF IL  
Sbjct: 207 GLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTH 266

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G          KM E+G   ++VTY+ LI+ Y +   +  AF +Y+ M    + P
Sbjct: 267 VLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVP 326

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             GR  EA QL+  M+  G+ PD +  +TL
Sbjct: 327 DLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 369



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  + D   +++ ++   G+ P++ T+N +    C      +  +  EK+      P+
Sbjct: 233 LLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPD 292

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+++C++GR+DDA  ++  M  +G   ++V+Y+ L++G  K   ++ A  ++ 
Sbjct: 293 IVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFH 352

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    +SP+I             G+  E+  L   M+ NGI PD      L +
Sbjct: 353 RMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVE 406



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  LD A  L+  +  RG+ PD+++Y  ++ G C   R+ EA QLF ++    L P+ +
Sbjct: 305 RKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIV 364

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  +CKEG+M ++  +   M+  G   +  T   L++GY K     SA ++  E+
Sbjct: 365 TYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVEL 424

Query: 124 CE--NNISPNI----------AGRPTEAMQLYDSMLRNGIMPD 154
                +IS +I            RP  A  L + M ++G  P+
Sbjct: 425 QRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPE 467



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A +LF ++  RGL PDI+TYNT+I GYC   ++ E+  L   +    + P+
Sbjct: 338 LCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPD 397

Query: 62  SIT-----------------------------------FTILIDAFCKEGRMDDATMMFS 86
           S T                                   ++ LI A C+E R   A  +  
Sbjct: 398 SFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLE 457

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M + G K  +  Y+ LI  + +   +  A  +  EM +  I PN+A             
Sbjct: 458 RMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLS 517

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  E   L   M+ +G++PD
Sbjct: 518 RSMEGESLVGEMVASGMLPD 537



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D + ++ ++  Y  + R+ E ++ F ++  V   P  IT   L++   K    D    ++
Sbjct: 187 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 246

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            +M   G   N+ T++ L     K  +        E+M E    P+I             
Sbjct: 247 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRK 306

Query: 134 GRPTEAMQLYDSMLRNGIMPD 154
           GR  +A  LY  M R G++PD
Sbjct: 307 GRLDDAFYLYKIMYRRGVVPD 327



 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E    AA  L  +++  G +P++  YN +I  +C  + + EA+ L  ++   ++KPN
Sbjct: 443 LCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPN 502

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
             T+  +I    +  R  +   +  +M+  G   ++     L  GY +  ++  A     
Sbjct: 503 LATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLS 562

Query: 117 FDVYEEMCENNISPNIAGRPTEA-------MQLYDSMLRNGIMPDGLLLSTLA 162
           F   E    +  S N   R T A       +++ D ML+ G++P+ L  +  A
Sbjct: 563 FFAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLTCNPFA 615


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 92/163 (56%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ ++  AL LFG +T R ++PDI+ YNT+I G+C +  +++A +L++ +   ++ PN I
Sbjct: 375 QDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHI 434

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILI+A+C  G + +A  ++  M+EKG K  +VT + +I GY +S +   A +    M
Sbjct: 435 TYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRM 494

Query: 124 CENNISPN-------IAGRPTE-----AMQLYDSMLRNGIMPD 154
               ++P+       I G   E     A    + M + G++PD
Sbjct: 495 IAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPD 537



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A KLF ++ +RG  PD  T+ T+I G+C    + +A+ LF  +T   +KP+
Sbjct: 338 LCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD 397

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LID FCK G M+ A+ ++  M+ +    N +TY  LI+ Y    ++  AF +++
Sbjct: 398 IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWD 457

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E  I P +            +G  ++A +    M+  G+ PD +  +TL +
Sbjct: 458 VMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 511



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 74/121 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +  G++  +G+ PD I+YNT+I G+   + +D+A     K+    L P+ IT+ ++++
Sbjct: 487 ADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMN 546

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC++GRM +A ++  KM+EKG   +  TY+ LI+G+    N+  AF  ++EM +   +P
Sbjct: 547 GFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAP 606

Query: 131 N 131
           +
Sbjct: 607 D 607



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK+  ++ ++G   D+I YNTI+ G C    L +A +LF+++      P+  TFT LI 
Sbjct: 312 ALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIH 371

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C++G M  A  +F  M ++  K ++V Y+ LIDG+ K   M+ A ++++ M    I P
Sbjct: 372 GHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFP 431

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMP 153
           N              G  +EA +L+D M+  GI P
Sbjct: 432 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKP 466



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 87/160 (54%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  A +L+  + ++G++P ++T NT+I GYC      +A +   ++    + P+ I++ 
Sbjct: 448 HVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYN 507

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+ F +E  MD A +  +KM ++G   +++TY+ +++G+ +   M+ A  V  +M E 
Sbjct: 508 TLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEK 567

Query: 127 NISPN-------IAGRPT-----EAMQLYDSMLRNGIMPD 154
            I+P+       I G  T     EA + +D ML+ G  PD
Sbjct: 568 GINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 97/178 (54%), Gaps = 15/178 (8%)

Query: 1   MLIKECHLD---AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +L++ C  D    A ++FG++  +G+ PD+++++++I  +     LD+A+  F  +    
Sbjct: 229 LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFG 288

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P+++ +T+L+  +C+ G M +A  +  +MLE+G   +V+ Y+ +++G  K + +  A 
Sbjct: 289 LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDAD 348

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +++EM E    P+              G  T+A+ L+ +M +  I PD +  +TL D
Sbjct: 349 KLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLID 406



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   D       ++   G+  D++TYNT+I  YC    L+EA ++   +    LKP+
Sbjct: 128 LCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPS 187

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+  CK+GR   A  +  +ML  G   +  TY+ L+    +  N   A +++ 
Sbjct: 188 LFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFG 247

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P++    +            +A+  +  M + G++PD ++ + L
Sbjct: 248 EMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVL 299



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A  +  ++ + GL PD  TYNT++   C  +   EA ++F ++    + P+
Sbjct: 198 LCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPD 257

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F+ LI  F +   +D A + F  M + G   + V Y+ L+ GY ++ NM  A  + +
Sbjct: 258 LVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRD 317

Query: 122 EMCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E     ++                T+A +L+D M+  G +PD    +TL
Sbjct: 318 EMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTL 369



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ A ++  ++   G+E ++ T N ++   C   + D+      ++    +  +
Sbjct: 93  LVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYAD 152

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI A+C+EG +++A  + + M +KG K ++ TY+ +I+G  K      A  +  
Sbjct: 153 MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 212

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    +SP+     T            EA +++  MLR G++PD +  S+L
Sbjct: 213 EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSL 264



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   L    + F  L  +G    I   N+++ G   ++ ++ A ++  ++    ++ N 
Sbjct: 59  VQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNV 118

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  I+++A CK+G+ DD     S+M   G  A++VTY+ LI  Y +   ++ AF++   
Sbjct: 119 YTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNS 178

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M +  + P++             GR   A  +   ML  G+ PD    +TL
Sbjct: 179 MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTL 229



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++E ++D A     ++   GL PDIITYN ++ G+C   R+ EA  +  K+    + P+
Sbjct: 513 FVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPD 572

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+T LI+    +  +++A     +ML++G
Sbjct: 573 RSTYTALINGHVTQDNLNEAFRFHDEMLQRG 603


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 12/171 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL L  ++ ++GLE DI  Y  +I G C++++LDEA  L  K+    L+PN I +T +
Sbjct: 415 EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTM 474

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +DA  K G++ +A  M  K+L+ G + NV+TY  LIDG  K+ ++  A   + +M +  +
Sbjct: 475 MDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGL 534

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            PN+             G   EA+QL++ M+  G+  D ++ + L D  L+
Sbjct: 535 DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585



 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  LF ++ + G  PD++T+N++I GY     LDE  QL E++     K +
Sbjct: 198 LCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKAD 257

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ FCK GRM+ A   F+ M  +G  ANVVT+S  +D + K   ++ A  ++ 
Sbjct: 258 VVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFA 317

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    ++ N             AGR  +A+ L D M+R G+  + +  + L D
Sbjct: 318 QMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVD 371



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +  ++ D G +P++ITY  +I G C    +DEA+  F K+  + L PN   +T L+D
Sbjct: 487 AIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVD 546

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G +++A  +F++M+ KG   + V Y+ L+DGY K  N+  AF +  +M ++ +  
Sbjct: 547 GLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQL 606

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +       I+G        EA +++  M+ +GI PD
Sbjct: 607 DLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 14/164 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+  F ++ D GL+P++  Y  ++ G C    L+EAVQLF ++    +  +
Sbjct: 513 LCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLD 572

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T L+D + K+G + DA  + +KM++ G + ++  Y+C I G+     M  A +V+ 
Sbjct: 573 KVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFS 632

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           EM  + I+P+ A            G   EA+ L D M R  ++P
Sbjct: 633 EMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER--VLP 674



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KLF Q+  RG+  +  TY  +I G C   RLD+A+ L +++    +  N +
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T+L+D  CKE ++ +A  +   M + G +AN + Y+ LI G+F ++N + A  +  EM
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               +  +I+             +  EA  L   M  +G+ P+ ++ +T+ D   +S   
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKV 484

Query: 172 QE 173
            E
Sbjct: 485 PE 486



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A   F  +   G+  +++T++T +  +C    + EA++LF ++    +  N  T+T
Sbjct: 273 RMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYT 332

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK GR+DDA ++  +M+ +G   NVVTY+ L+DG  K + +  A DV   M + 
Sbjct: 333 CLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKA 392

Query: 127 NISPN 131
            +  N
Sbjct: 393 GVRAN 397



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 16/151 (10%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF QL      P++ T+N +I   C    L EA  LF ++  +   P+ +TF  LID +
Sbjct: 178 RLFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY 233

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G +D+   +  +M   G KA+VVTY+ LI+ + K   M++A+  +  M    +  N+
Sbjct: 234 GKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 133 A------------GRPTEAMQLYDSMLRNGI 151
                        G   EAM+L+  M   G+
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 83/207 (40%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+ L  ++  +G+  +++TY  ++ G C   ++ EA  +   +    ++ N +
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 64  TFTILI-----------------------------------DAFCKEGRMDDATMMFSKM 88
            +T LI                                      C   ++D+A  + +KM
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
            E G + N + Y+ ++D  FKS  +  A  + +++ ++   PN+            AG  
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSI 519

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA+  ++ M   G+ P+    + L D
Sbjct: 520 DEAISHFNKMRDLGLDPNVQAYTALVD 546


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L G++ ++G+ P+++TYN +I G C   R D+  +L EK+   +  P+  T+T ++ 
Sbjct: 215 AEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVH 274

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G++     +  + + KG    V+TY+ LI+GY K  +MK+A DV + M  N ++P
Sbjct: 275 GLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNP 334

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +             G+  +AM     M   G+ P+ +  ++L
Sbjct: 335 GVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSL 377



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+    Q+   GL P+ +T+N++I G CS+     A++L + +    + P+  T+ I ID
Sbjct: 355 AMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFID 414

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C EG++++A  +FS +  KG KA+ V Y+ L+ GY +  ++ SAF + E+M   N  P
Sbjct: 415 ALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMP 474

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMP 153
           ++              R   A+ L D M + GI P
Sbjct: 475 DVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEP 509



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 20/174 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D+A  L  ++      PD+ TYNT+I G C + RLD A+ L +K+    ++P + TF I
Sbjct: 457 IDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNI 516

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI-----DGYFKSQNMKSAFDVYEE 122
           LI     + +  DA  M+ +M+  G K +  TY+  I     +G  K +N+  A     E
Sbjct: 517 LIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAV---VE 573

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           M E  + P++            AG   +A   +  ML   I PD    S L +Y
Sbjct: 574 MHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNY 627



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 8   LDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           L AA  LF Q+  R G   D  +Y  +I G C+  R+D+A ++F K++    +P   T+T
Sbjct: 141 LAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYT 200

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L+D  CK  R+ +A  +  +M+ KG   NVVTY+ LI G  +         + E+M   
Sbjct: 201 VLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQ 260

Query: 127 NISPN 131
             SP+
Sbjct: 261 RHSPD 265



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L+ A  LF  L  +G++   + Y +++ GYC +  +D A  L EK+      P+
Sbjct: 416 LCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPD 475

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LID  CK  R+D A  +  KM ++G +    T++ LI      +    A  +YE
Sbjct: 476 VHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYE 535

Query: 122 EMCENNISPN 131
           +M  +   P+
Sbjct: 536 QMISSGCKPD 545



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-----TCVQLKPNSITFTILIDA 71
           ++ + GL PD  TYN ++ G C    L  A  LF ++      C     +  ++TILI  
Sbjct: 115 RMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACY----DRYSYTILIKG 170

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            C  GR+DDA  +F+KM     +  V TY+ L+DG  K + +  A  +  EM    + PN
Sbjct: 171 LCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPN 230

Query: 132 I 132
           +
Sbjct: 231 V 231



 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 25/153 (16%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIIC-----GYCSLNRLDEAVQLFEKLTC 55
           ML  + H DAA K++ Q+   G +PD  TY   I      G      +D AV    +   
Sbjct: 521 MLWDKKHADAA-KMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHE--- 576

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
             + P+  T+  +I A+   G  + A     KML      +  TYS L++ Y  +++   
Sbjct: 577 AGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLN-YMCNKDDSD 635

Query: 116 AFD---------------VYEEMCENNISPNIA 133
           AFD               ++E+MCE++ +P I+
Sbjct: 636 AFDNEKIWKMVDVRNLQELFEQMCESDAAPGIS 668


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L+ A  L  ++    L+P++ITYN +I GYC    L+EA +LF+ +    L PN
Sbjct: 348 LCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPN 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  L+  +CK G+M++A ++   MLEKG   N  TY+CLI G+ +   M+   ++  
Sbjct: 408 VITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLN 467

Query: 122 EM-CE----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM C     + ++ NI          P +A +L D ML  G+ P  L  + L +
Sbjct: 468 EMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLN 521



 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 95/170 (55%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L AALK+F ++  +GL+P ++TYN+++ G C+  +L+EA  L +++    LKPN I
Sbjct: 315 KDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVI 374

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ +CK+  +++A  +F  + ++G   NV+T++ L+ GY K   M+ AF + + M
Sbjct: 375 TYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVM 434

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E    PN +            G+  E   L + M   G+  D +  + L
Sbjct: 435 LEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNIL 484



 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 15/177 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE        ++ ++  R + P++IT+NT+I G C + +L++A  + + +      PN
Sbjct: 205 LVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPN 264

Query: 62  SITFTILIDAFCKEGR---MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +T+  LID +CK GR   M  A  +  +M+E     N VT++ LIDG+ K +N+ +A  
Sbjct: 265 VVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALK 324

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           V+EEM    + P +             G+  EA  L D ML + + P+ +  + L +
Sbjct: 325 VFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALIN 381



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 89/159 (55%), Gaps = 15/159 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK   ++ +  + P+ +T+N +I G+C    L  A+++FE++    LKP  +T+  L
Sbjct: 288 DAILK---EMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++  C EG++++A ++  +ML    K NV+TY+ LI+GY K + ++ A ++++ + +  +
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL 404

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
           +PN+             G+  EA  L   ML  G +P+ 
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNA 443



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 15/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE---AVQLFEKLTCVQL 58
           L K   L+ A  +   +   G  P+++TYNT+I GYC + R+ +   A  + +++   ++
Sbjct: 240 LCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKV 299

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            PNS+TF +LID FCK+  +  A  +F +M  +G K  VVTY+ L++G      +  A  
Sbjct: 300 SPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKV 359

Query: 119 VYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + +EM  +N+ PN+                 EA +L+D++ + G+ P+ +  +TL
Sbjct: 360 LLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTL 414



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++    L  ++  RG++ D +TYN +I  +C      +A +L +++    LKP+ +
Sbjct: 455 REGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHL 514

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL++ +C EG +  A  +  +M ++G  ANVVTY+ LI GY +   ++ A  +  EM
Sbjct: 515 TYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEM 574

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
            E  + PN   R T  + + + M+  G +PD
Sbjct: 575 LEKGLIPN---RTTYEI-IKEEMMEKGFLPD 601



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L   + ++G  P+  TYN +I G+C   +++E   L  ++ C  +K +++T+ I
Sbjct: 424 MEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNI 483

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A+C++     A  +  +ML+KG K + +TY+ L++GY    N+++A ++ ++M +  
Sbjct: 484 LISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEG 543

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
              N+             G+  +A  L + ML  G++P+
Sbjct: 544 RWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPN 582



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            L+ F +  D   +  +++ N ++      N       +++++   ++ PN ITF  +I+
Sbjct: 179 GLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVIN 238

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK---SQNMKSAFDVYEEMCENN 127
             CK G+++ A  +   M   G   NVVTY+ LIDGY K      M  A  + +EM EN 
Sbjct: 239 GLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENK 298

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +SPN       I G       + A+++++ M   G+ P  +  ++L +
Sbjct: 299 VSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN 346



 Score = 40.0 bits (92), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/151 (17%), Positives = 64/151 (42%), Gaps = 15/151 (9%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           I  + ++  Y   ++    ++ F++    + K + ++   L+ A  KE        ++ +
Sbjct: 161 IIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKE 220

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------------- 132
           M+ +    N++T++ +I+G  K   +  A DV ++M      PN+               
Sbjct: 221 MIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGR 280

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G+  +A  +   M+ N + P+ +  + L D
Sbjct: 281 VGKMYKADAILKEMVENKVSPNSVTFNVLID 311


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 12/171 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL L  ++ ++GLE DI  Y  +I G C++++LDEA  L  K+    L+PN I +T +
Sbjct: 415 EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTM 474

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +DA  K G++ +A  M  K+L+ G + NV+TY  LIDG  K+ ++  A   + +M +  +
Sbjct: 475 MDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGL 534

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            PN+             G   EA+QL++ M+  G+  D ++ + L D  L+
Sbjct: 535 DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585



 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  LF ++ + G  PD++T+N++I GY     LDE  QL E++     K +
Sbjct: 198 LCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKAD 257

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ FCK GRM+ A   F+ M  +G  ANVVT+S  +D + K   ++ A  ++ 
Sbjct: 258 VVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFA 317

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    ++ N             AGR  +A+ L D M+R G+  + +  + L D
Sbjct: 318 QMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVD 371



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +  ++ D G +P++ITY  +I G C    +DEA+  F K+  + L PN   +T L+D
Sbjct: 487 AIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVD 546

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G +++A  +F++M+ KG   + V Y+ L+DGY K  N+  AF +  +M ++ +  
Sbjct: 547 GLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQL 606

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +       I+G        EA +++  M+ +GI PD
Sbjct: 607 DLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 14/164 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+  F ++ D GL+P++  Y  ++ G C    L+EAVQLF ++    +  +
Sbjct: 513 LCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLD 572

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T L+D + K+G + DA  + +KM++ G + ++  Y+C I G+     M  A +V+ 
Sbjct: 573 KVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFS 632

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           EM  + I+P+ A            G   EA+ L D M R  ++P
Sbjct: 633 EMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER--VLP 674



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KLF Q+  RG+  +  TY  +I G C   RLD+A+ L +++    +  N +
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T+L+D  CKE ++ +A  +   M + G +AN + Y+ LI G+F ++N + A  +  EM
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               +  +I+             +  EA  L   M  +G+ P+ ++ +T+ D   +S   
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKV 484

Query: 172 QE 173
            E
Sbjct: 485 PE 486



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A   F  +   G+  +++T++T +  +C    + EA++LF ++    +  N  T+T
Sbjct: 273 RMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYT 332

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK GR+DDA ++  +M+ +G   NVVTY+ L+DG  K + +  A DV   M + 
Sbjct: 333 CLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKA 392

Query: 127 NISPN 131
            +  N
Sbjct: 393 GVRAN 397



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 16/151 (10%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF QL      P++ T+N +I   C    L EA  LF ++  +   P+ +TF  LID +
Sbjct: 178 RLFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY 233

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G +D+   +  +M   G KA+VVTY+ LI+ + K   M++A+  +  M    +  N+
Sbjct: 234 GKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 133 A------------GRPTEAMQLYDSMLRNGI 151
                        G   EAM+L+  M   G+
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 83/207 (40%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+ L  ++  +G+  +++TY  ++ G C   ++ EA  +   +    ++ N +
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 64  TFTILI-----------------------------------DAFCKEGRMDDATMMFSKM 88
            +T LI                                      C   ++D+A  + +KM
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
            E G + N + Y+ ++D  FKS  +  A  + +++ ++   PN+            AG  
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSI 519

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA+  ++ M   G+ P+    + L D
Sbjct: 520 DEAISHFNKMRDLGLDPNVQAYTALVD 546


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 15/177 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           L K+     A +L   L D  L   PD +T++T+I G C   ++DEA  +F+ +      
Sbjct: 333 LCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYV 392

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN IT+  L++  CK  +M+ A  M   M++KG   +V+TYS L+D + K+  +  A ++
Sbjct: 393 PNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 452

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSM-LRNGIMPDGLLLSTLAD 163
              M     +PN+            + R  EA Q++D M L++G++PD +   TL D
Sbjct: 453 LHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLID 509



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 15/177 (8%)

Query: 2    LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
            L K+  +  A +L   L D  L   PD +T++T+I G C   + DEA  +F+ +      
Sbjct: 827  LCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYV 886

Query: 60   PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            PN +T+ +L++  CK  +M+ A  M   M++KG   +V+TYS L+D + K+ ++  A ++
Sbjct: 887  PNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALEL 946

Query: 120  YEEMCENNISPNI------------AGRPTEAMQLYDSM-LRNGIMPDGLLLSTLAD 163
               M     +PN+            + +  EA Q++D M L++G+ PD +   TL D
Sbjct: 947  LHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLID 1003



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 4/149 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++AA  +   + + G+ P+++TYN ++ G C   R++EA Q  E++      P+
Sbjct: 612 LCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPD 671

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SIT+  L+ A C+  R DDA  + S++   G   + VTY+ L+DG +KS   + A  V E
Sbjct: 672 SITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLE 731

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNG 150
           EM      P++    T    L DS+ + G
Sbjct: 732 EMVGKGHHPDVVTYNT----LIDSLCKAG 756



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+++ ++ +  L PD +T+N +I G C     ++A  LFE++    L+P+ +TF  LID
Sbjct: 551 ALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 610

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+++ A  +   M   G   NVVTY+ L+ G  KS  ++ A    EEM  +   P
Sbjct: 611 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVP 670

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           +             A R  +A+QL   +   G  PD +  + L D  L  SG  E  I
Sbjct: 671 DSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD-GLWKSGQTEQAI 727



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 19/171 (11%)

Query: 11  ALKLF-GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AL++F G++   G+ P I+TYNTII G C  N L   ++LFE+L      P+ +T+  LI
Sbjct: 199 ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLI 258

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--N 127
           D+ CK G +++A  +   M  +    NVVTYS LI+G  K   +  A ++ +EM     +
Sbjct: 259 DSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 318

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG---IMPDGLLLSTLAD 163
           + PNI                 EA +L  S LR+G   + PD +  STL D
Sbjct: 319 VLPNIITYNSFLDGLCKQSMTAEACELMRS-LRDGSLRVSPDTVTFSTLID 368



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L A ++LF +L +RG  PD++TYNT+I   C    L+EA +L   ++     PN
Sbjct: 226 LCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDV 119
            +T+++LI+  CK GR+D+A  +  +M  K      N++TY+  +DG  K      A ++
Sbjct: 286 VVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACEL 345

Query: 120 YEEMCENN--ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              + + +  +SP+              G+  EA  ++D M+  G +P+ +  + L +
Sbjct: 346 MRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 403



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 16/188 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQ 57
           L K   +D A +L  ++  +  +  P+IITYN+ + G C  + + EA +L   L    ++
Sbjct: 790 LCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLR 849

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P+++TF+ LID  CK G+ D+A  +F  M+  G   NVVTY+ L++G  K+  M+ A 
Sbjct: 850 VSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAH 909

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            + E M +  ++P++            A    EA++L   M   G  P+ +  +++ D  
Sbjct: 910 AMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969

Query: 166 LQSSGSQE 173
            +S  S E
Sbjct: 970 CKSDQSGE 977



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L D   +PD   +N  I G   L  +  A+Q++ ++  ++L P+ +TF ILI   CK G 
Sbjct: 523 LLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGN 582

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
            + A+ +F +M+ K  + +V+T+  LIDG  K+  +++A D+ + M    + PN+     
Sbjct: 583 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 642

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  +GR  EA Q  + M+ +G +PD +   +L
Sbjct: 643 LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSL 678



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 19/192 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +   ++   G  PD ITY +++   C  +R D+A+QL  +L      P+
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 706

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+ IL+D   K G+ + A  +  +M+ KG   +VVTY+ LID   K+ +++ A  ++ 
Sbjct: 707 TVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHG 766

Query: 122 EMCENNIS----PNI------------AGRPTEAMQLYDSMLRNG--IMPDGLLLSTLAD 163
           +M  + +S    PN+             GR  EA +L   M+R    ++P+ +  ++  D
Sbjct: 767 DM-SSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLD 825

Query: 164 YNLQSSGSQEHC 175
              + S   E C
Sbjct: 826 GLCKQSMMAEAC 837



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 29/158 (18%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNS 62
            K  H+D AL+L   +  RG  P+++T+N+II G C  ++  EA Q+F+ +T    L P+ 
Sbjct: 936  KASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDK 995

Query: 63   ITFTILIDAFCKEG----------------------------RMDDATMMFSKMLEKGPK 94
            IT+  LID   + G                            ++ D +    +MLE    
Sbjct: 996  ITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELV 1055

Query: 95   ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
             + VT++ LI G  K+ N + A  ++EEM   N+ P++
Sbjct: 1056 PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 1093



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  + + A  LF ++  + L+PD++T+  +I G C   +++ A  + + +  + + PN +
Sbjct: 579 KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV 638

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+   CK GR+++A     +M+  G   + +TY  L+    ++     A  +  E+
Sbjct: 639 TYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL 698

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 P+             +G+  +A+ + + M+  G  PD +  +TL D
Sbjct: 699 KSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLID 750



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 18   LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
            L D   +PD   +N  I G   L++L +  +   ++  ++L P+ +TF ILI   CK G 
Sbjct: 1017 LLDAMPDPDTYAFNCCING---LSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGN 1073

Query: 78   MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
             + A+ +F +M+ K  + +V+T+  LIDG  K+  +++ +D+
Sbjct: 1074 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDI 1115


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A +LF ++  RGL P ++TYNT+I        + +A ++++++   Q+ PN
Sbjct: 161 LVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPN 220

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +I A C+EG + DA  +F  M E G + N  TY+ L+ G+ +  ++ SA  +Y+
Sbjct: 221 VVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQ 280

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E+ ++ ++PN             A R +EA  ++  M R G+ P   + ++L D   +S 
Sbjct: 281 ELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSG 340

Query: 170 GSQE 173
            +QE
Sbjct: 341 NAQE 344



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 10/172 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A +LF  + + G++P+  TYN ++ G+C  + ++ AV L+++L    L PN
Sbjct: 231 LCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ FT LID FCK  R  +A  MF +M   G    V  Y+ L+DG F+S N + A  +Y+
Sbjct: 291 AVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQ 350

Query: 122 EM-----CENNISPNIAGRP---TEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM     C +  + +I  R       M + D  L+ G+  DG+ L+  A YN
Sbjct: 351 EMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQ-GVQEDGVNLNA-AAYN 400



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 76/125 (60%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A +    + + G+  +   YN +I  YC +  L+EA+    ++T V ++PN ++++
Sbjct: 376 QMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYS 435

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID   K G+M  A  ++++M+ KG + NVVTY+ LI G+ K+  + +AF +++EM EN
Sbjct: 436 SLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIEN 495

Query: 127 NISPN 131
            ISPN
Sbjct: 496 GISPN 500



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L+ ++T  GL PD  T + ++ G C   ++  A +  + +    +  N+  +  LID
Sbjct: 345 ALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALID 404

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ G +++A    ++M E G + NVV+YS LIDG+ K   M+ A  +Y EM    I P
Sbjct: 405 EYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEP 464

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G    A +L+  M+ NGI P+ + +S L D
Sbjct: 465 NVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVD 509



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 92/187 (49%), Gaps = 35/187 (18%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+ AL    ++T+ G+EP++++Y+++I G+    ++  A+ ++ ++    ++PN +T+T
Sbjct: 411 NLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYT 470

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF--------- 117
            LI    K G +D A  +  +M+E G   N +T S L+DG  +   ++ A          
Sbjct: 471 ALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGL 530

Query: 118 ---DVY--------EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
              D++        EE C   + PN            + G+  EA +L+  M ++G++PD
Sbjct: 531 KCSDIHSVFSNFTIEEEC---LIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPD 587

Query: 155 GLLLSTL 161
               + L
Sbjct: 588 SFTYTLL 594



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 12/179 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K      A  +F ++   G+ P +  YN+++ G        EA+ L++++T + L P+  
Sbjct: 303 KAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEF 362

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T +I++   C  G+M  A      + E G   N   Y+ LID Y +  N++ A      M
Sbjct: 363 TCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRM 422

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            E  I PN+             G+   AM +Y  M+  GI P+ +  + L   + ++ G
Sbjct: 423 TEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGG 481



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL---FEKLTCVQLK- 59
           K   +DAA +L  ++ + G+ P+ IT + ++ G C  NR+ EAV+    +  L C  +  
Sbjct: 478 KNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHS 537

Query: 60  -------------PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
                        PNS+ +  LI     +G+  +A  +FS M + G   +  TY+ LI G
Sbjct: 538 VFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRG 597

Query: 107 YFKSQNMKSAFDVYEEMCENNISP 130
                 + +A  +Y +M +  + P
Sbjct: 598 QCMLGYVLNAMMLYADMMKIGVKP 621



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL +F +L  R L P +   N ++ G     R   A +LF+++    L P+ +T+  
Sbjct: 135 LDEALYVFRRL--RTL-PALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNT 191

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+A   +G +  A  ++ +M+ +    NVVTY+ +I    +   +  A  +++ M E  
Sbjct: 192 LINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAG 251

Query: 128 ISPN-------IAGR-----PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + PN       ++G         A+ LY  +L++G+ P+ ++ +TL D
Sbjct: 252 MQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLID 299


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 27/187 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ A  +F  L DRGL PD+ITY  +I GYC +N++ EA  +   +    ++P+
Sbjct: 610 LFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPD 669

Query: 62  SITFTIL---------------IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            IT+T+L               +DA   +  M D + ++S+M +   K +V+ Y+ LID 
Sbjct: 670 VITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDK 729

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + K+ N++ A +++ EM +  ++P+              G   +A+ L+D ML  GI PD
Sbjct: 730 HCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPD 789

Query: 155 GLLLSTL 161
              +S L
Sbjct: 790 AHTMSVL 796



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +D A+ ++ QL   GL P+  TY   I G+C    L EA+ +F  +    + PN
Sbjct: 194 LVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPN 253

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S ++T  I+  C  GR D    +   ++      +V  Y+ +I G+     +K A  +  
Sbjct: 254 SFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILR 313

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +   +P++             G   +A+ L+D M+  G+  + ++LS++
Sbjct: 314 EMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSI 365



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A++L  ++  + + PDII Y T+I GY    ++ +A+ ++ ++  +  KP+
Sbjct: 404 LCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPD 463

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY---FKSQNMKSAFD 118
            +T+ +L   F + G   +A  + + M  +G K + VT++ +I+G     K  + ++ FD
Sbjct: 464 IVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFD 523

Query: 119 VYEEMCENNISPNIAG 134
             EE C  N S  + G
Sbjct: 524 NLEEKCLENYSAMVNG 539



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 4/107 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL ++ ++ D G +PDI+TYN +  G+       EA+ L   +    +KP+++T  ++I+
Sbjct: 448 ALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIE 507

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             C  G++DDA   F  + EK  +     YS +++GY ++ ++  AF
Sbjct: 508 GLCIGGKVDDAQAFFDNLEEKCLE----NYSAMVNGYCEANHVNKAF 550



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 68/126 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H++ A  L  +L+ +G      ++  ++   CS    ++A+ L E +  + + P  I ++
Sbjct: 545 HVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYS 604

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I A  + G M+ A  +F+ ++++G   +V+TY+ +I+GY +   MK A+ V  +M   
Sbjct: 605 KVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNR 664

Query: 127 NISPNI 132
            I P++
Sbjct: 665 GIEPDV 670



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 47/197 (23%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L  A  +  ++  +G  PD+  Y  +I GYC +  L +A+ L +++    +K N + 
Sbjct: 302 EMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVI 361

Query: 65  -----------------------------------FTILIDAFCKEGRMDDATMMFSKML 89
                                              + +++DA CK G++++A  +  +M 
Sbjct: 362 LSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMK 421

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
            K    +++ Y+ +I GYF    +  A ++Y EM +    P+I             G   
Sbjct: 422 GKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQ 481

Query: 138 EAMQLYDSMLRNGIMPD 154
           EA+ L + M   G+ PD
Sbjct: 482 EALSLLNYMETQGVKPD 498



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 12/144 (8%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F +    G+  D   YN ++   C L +++EAV+L  ++   ++ P+ I +T +I  +  
Sbjct: 382 FKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFL 441

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--- 131
           +G++ DA  ++ +M + G K ++VTY+ L  G+ ++   + A  +   M    + P+   
Sbjct: 442 KGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVT 501

Query: 132 ---------IAGRPTEAMQLYDSM 146
                    I G+  +A   +D++
Sbjct: 502 HNMIIEGLCIGGKVDDAQAFFDNL 525



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   K+   + +  +  D+  Y  +I G+CS  +L EA  +  ++      P+   +  L
Sbjct: 271 DLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCAL 330

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY------------FKSQNMKSA 116
           I  +C  G +  A  +  +M+ KG K N V  S ++ G             FK       
Sbjct: 331 ISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGI 390

Query: 117 FDVYEEMCENNISPNIA--GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           F  ++E C N +   +   G+  EA++L   M    ++PD +  +T+
Sbjct: 391 F--FDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTV 435


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PDI TYNT+I G C    L  A +L  ++     +PN IT+TILID FCKEGR+++A
Sbjct: 9   GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 68

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  +M  KG   N V Y+CLI    K + ++ A +++ +M      P+I         
Sbjct: 69  RNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 128

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                +  EA+ LY  ML  G++ + +  +TL    L+    QE
Sbjct: 129 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQE 172



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  AL +FG ++ +G +PDI T+N++I G C +N+ +EA+ L++ +    +  N
Sbjct: 94  LCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIAN 153

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI AF + G M +A  + + ML +G   + +TY+ LI    ++ N++    ++E
Sbjct: 154 TITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFE 213

Query: 122 EMCE-----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M       NNIS NI        G    A++    M+  G+ PD +  ++L +   ++ 
Sbjct: 214 DMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTG 273

Query: 170 GSQE 173
            +QE
Sbjct: 274 RAQE 277



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  ++  AL+    +  RGL PDI+TYN++I G C   R  EA+ LF+KL    + P+
Sbjct: 234 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 293

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +IT+  LI   CKEG  DDA ++ S+ ++ G   N VT+  L+  + K
Sbjct: 294 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 341



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +L +A +L  ++  +G EP++ITY  +I  +C   RL+EA  + ++++   L  N
Sbjct: 24  LCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALN 83

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  LI A CK+ ++ DA  MF  M  KG K ++ T++ LI G  K    + A  +Y+
Sbjct: 84  AVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQ 143

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           +M    +  N     T    L  + LR G M + L L
Sbjct: 144 DMLLEGVIANTITYNT----LIHAFLRRGAMQEALKL 176



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++   +  ALKL   +  RG   D ITYN +I   C    +++ + LFE +    L PN
Sbjct: 164 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 223

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I+  ILI+  C+ G +  A      M+ +G   ++VTY+ LI+G  K+           
Sbjct: 224 NISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKT----------- 272

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
                       GR  EA+ L+D +   GI PD +  +TL  ++
Sbjct: 273 ------------GRAQEALNLFDKLQVEGICPDAITYNTLISWH 304



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  +  +++ +GL  + + YN +I   C   ++ +A+ +F  ++    KP+  
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI   CK  + ++A  ++  ML +G  AN +TY+ LI  + +   M+ A  +  +M
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 180

Query: 124 ----CE-NNISPN-------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               C  ++I+ N        AG   + + L++ M+  G+ P+ +  + L +  L  +G+
Sbjct: 181 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN-GLCRTGN 239

Query: 172 QEHCI 176
            +H +
Sbjct: 240 IQHAL 244



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++  L LF  +  +GL P+ I+ N +I G C    +  A++    +    L P+
Sbjct: 199 LCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 258

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK GR  +A  +F K+  +G   + +TY+ LI  + K      A  +  
Sbjct: 259 IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 318

Query: 122 EMCENNISPN 131
              ++   PN
Sbjct: 319 RGVDSGFIPN 328



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 49  LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
           + E +  V   P+  T+  LI   CK+G +  A  + ++M  KG + NV+TY+ LID + 
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 109 KSQNMKSAFDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGL 156
           K   ++ A +V +EM    ++ N  G            +  +A+ ++  M   G  PD  
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 157 LLSTL 161
             ++L
Sbjct: 121 TFNSL 125



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 38/75 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL LF +L   G+ PD ITYNT+I  +C     D+A  L  +       PN
Sbjct: 269 LCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 328

Query: 62  SITFTILIDAFCKEG 76
            +T+ IL+  F KEG
Sbjct: 329 EVTWYILVSNFIKEG 343


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  A K F ++  + + PD ITY T+I G+    ++ E   LF ++    LKP+ +T+T
Sbjct: 378 HVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYT 437

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G M +A  + ++M++ G   N+VTY  LIDG  K   + +A ++ +EM + 
Sbjct: 438 TLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKK 497

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  N+            AG   +A++L   M   GI PD +  +T+ D
Sbjct: 498 GLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVID 546



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 17/173 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE H     +L  Q+  R   PD+++Y+T+I GYC L  L +A++L + +    LKPN 
Sbjct: 274 VKEAH-----RLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNR 328

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  +I   CK G+  +A  +  +M+ +    + V Y+ LI G+FK  ++++A   ++E
Sbjct: 329 YTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDE 388

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+              G+  E   L+  M+  G+ PD +  +TL D
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLID 441



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 51/209 (24%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +++ A+KL  ++   G++PD ITY T+I  YC L  +D+A +L +++    L+P  +
Sbjct: 515 KAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVV 574

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG------------------------------- 92
           TF +L++ FC  G ++D   +   MLEKG                               
Sbjct: 575 TFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRM 634

Query: 93  ------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------ 134
                 P +N  TY+ LI G+ K++N+K A+ +Y+EM E    P +              
Sbjct: 635 RNQGVAPDSN--TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKK 692

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  EA +L++ M  +G++ DG + +   D
Sbjct: 693 KILEARELFEEMRGHGLVADGEIYNFFVD 721



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+  ++  + + PD + Y T+I G+  L  +  A + F+++   ++ P+ IT+T LI 
Sbjct: 347 AEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQ 406

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F + G++ +   +F +M+ +G K + VTY+ LID Y K+  M +AF ++ EM +  ++P
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP 466

Query: 131 NIA------------GRPTEAMQLYDSMLRNGI 151
           NI             G    A +L D M + G+
Sbjct: 467 NIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 32/175 (18%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++  +GL+ ++  YN+++ G C    +++A++L +++    + P+
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPD 537

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T +IDA+C+ G +D A  +  +ML++G +  VVT++ L++G+              
Sbjct: 538 AITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF-------------- 583

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
             C       + G   +  +L   ML  GI+PD +  +TL          ++HCI
Sbjct: 584 --C-------MLGMLEDGDRLLGWMLEKGIVPDAITYNTLM---------KQHCI 620



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 62/118 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   K++ ++ ++G+ PD  TYN +I G+C    L EA  L++++      P   ++  
Sbjct: 624 MNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNA 683

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           LI  F K+ ++ +A  +F +M   G  A+   Y+  +D  ++  +++   ++ +E  E
Sbjct: 684 LIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIE 741


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 17/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK   +D ALKLF  +  +G  PD+I YN +I G C   R+ EA  L  ++    L P+
Sbjct: 474 LIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPS 533

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  LID  CK   +++A +  S M+EK  + NV+TYS LI+G   +     A  ++ 
Sbjct: 534 AVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWN 593

Query: 122 EMCENNISP-NIA-----------GRPTEAMQLYDSMLRNGIMPD-----GLLLSTLADY 164
           EM     +P +IA           GRP EA+     M    + PD     GLL + L D 
Sbjct: 594 EMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDS 653

Query: 165 N 165
           N
Sbjct: 654 N 654



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K    + + G +PDI+ Y+  + G   +  +D+A++LF+ +      P+ I + ILI 
Sbjct: 448 ACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIK 507

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK  R+ +A  +  +M EKG   + VTY+ LIDG  K+ +++ A      M E    P
Sbjct: 508 GLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREP 567

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           N+            AGRP +A+ L++ M R G  P  +
Sbjct: 568 NVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSI 605



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK   LD A+ LF  +   G +PD++ YN +I G C+ NRL E+  L +++    ++P 
Sbjct: 334 LIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPT 393

Query: 62  SIT-----------------------------------FTILIDAFCKEGRMDDATMMFS 86
           S T                                    T L+   CK G+  +A     
Sbjct: 394 SFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLV 453

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------ 134
            M E+G + ++V YS  +DG  K Q +  A  +++++C     P++              
Sbjct: 454 DMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQ 513

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           R  EA  L   M   G++P  +  +TL D
Sbjct: 514 RIAEAQNLLHEMEEKGLVPSAVTYNTLID 542



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 68/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL+ A+     + ++  EP++ITY+T+I G C+  R D+A+ L+ ++      P+
Sbjct: 544 LCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPS 603

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SI +   I      GR ++A +   +M E+  K +   Y  L++ +    N   AF++ +
Sbjct: 604 SIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQ 663

Query: 122 EMCENNISPNI 132
           EM +    P++
Sbjct: 664 EMVDKGKFPDL 674



 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D AL +F ++ DRG   D   ++ ++  +    ++D+A +L E +    ++ N  TF  
Sbjct: 117 FDKALDVFNEIHDRGW-VDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCS 175

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F KE R+D A  +F KM + G   ++  Y  +I G   ++++K A  +Y EM    
Sbjct: 176 LIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFK 235

Query: 128 ISPNI 132
           I P++
Sbjct: 236 IQPDV 240



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 32/203 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +D AL LF ++   G  PDI  Y+ II G C    + +A+ L+ ++   +++P+
Sbjct: 180 FVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPD 239

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
               T LI +F KE   ++ T  F +M E   PKA+ + Y+ +++    + ++  A+ + 
Sbjct: 240 VKIVTKLISSFSKE---EELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLL 296

Query: 121 EEMCENN----------------ISPNI------------AGRPTEAMQLYDSMLRNGIM 152
           + +   N                + PN              G    A+ L+  M R G  
Sbjct: 297 QAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCK 356

Query: 153 PDGLLLSTLADYNLQSSGSQEHC 175
           PD LL + L D    S+  QE C
Sbjct: 357 PDLLLYNNLIDGLCTSNRLQESC 379



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 13/157 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ D G   D  T   ++  YC++   D+A+ +F ++   +   +   F+IL+ AF K G
Sbjct: 91  EMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIH-DRGWVDEYVFSILVLAFSKWG 149

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133
           ++D A  +   M EK  + N  T+  LI G+ K   +  A  ++++M ++  +P+I+   
Sbjct: 150 KVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYD 209

Query: 134 ---------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        +A+ LY  M    I PD  +++ L
Sbjct: 210 VIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKL 246



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+  T++ +I G      LD AV LF  +  +  KP+ + +  LID  C   R+ ++  +
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGL 381

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M E G +    T +C+     +  ++  A  + ++M  +   P I            
Sbjct: 382 LQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCK 441

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G+  EA +    M   G  PD +  S   D
Sbjct: 442 HGKEVEACKFLVDMAEEGFQPDIVAYSACLD 472



 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +L   + ++ +  +  T+ ++I G+   +R+D+A+ LF+K+      P+  
Sbjct: 147 KWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDIS 206

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            + ++I   C    +  A  ++S+M     + +V   + LI  + K + +   F   EEM
Sbjct: 207 LYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFF---EEM 263

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            E+         P  +  LY+S+L N ++ +G   S    Y+L  + +  +CI
Sbjct: 264 HEDM-------DPKASTLLYNSVL-NSLVDNG---SVHKAYHLLQAITIGNCI 305


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L  ++   G  PD++TY+++I G        +A +LF+++     KP+SITFT L+D
Sbjct: 168 AMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMD 227

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K GR+DDA  +  +M E+G K  VVTY+ LI G+ K  ++  A+++ +EM  N   P
Sbjct: 228 ALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKP 287

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            A +  EA Q+   M + G  PD +  +TL
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTL 330



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++   G +PD++TY+ +I G    ++LDEA Q+ +K+      P++IT+  LI+
Sbjct: 273 AYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLIN 332

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K G ++DA  +F +M  KG   +VVTYS LI    K+  ++SA  ++EEM    I P
Sbjct: 333 GLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQP 392

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++            AG+  +A +L+  M   G+ PD
Sbjct: 393 DLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPD 428



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 77/132 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A +LF ++  +G  PD++TY+T+I       R++ A  LFE++  V ++P+
Sbjct: 334 LGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPD 393

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I    K G++DDA  +FS+M  KG   +V+TY+  ++   +    K A  ++E
Sbjct: 394 LFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFE 453

Query: 122 EMCENNISPNIA 133
           +M E+ + P++A
Sbjct: 454 DMKESGLLPDVA 465



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK   LD A ++  ++   G  PD ITYNT+I G      L++A +LF+++      P+
Sbjct: 299 LIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPD 358

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI A  K  R++ A ++F +M   G + ++ TY  +I    K+  +  A  ++ 
Sbjct: 359 VVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFS 418

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM    +SP++             GR  EA ++++ M  +G++PD
Sbjct: 419 EMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPD 463



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D AL+L  ++ D G  PD+ TYN +I       RL EA  LF ++      P+
Sbjct: 89  LGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPD 148

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI    K GR   A  +  +M   G   +V+TYS LI G  K      AF +++
Sbjct: 149 TFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQ 208

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           EM      P+             AGR  +A++L D M   G+ P
Sbjct: 209 EMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKP 252



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  LF +L      PD+++Y+ +I       + + A+++  ++     KPN
Sbjct: 19  LAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPN 78

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+D   K G+ D+A  + ++M + G   +V TY+CLI    K+  +  AF ++ 
Sbjct: 79  LWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFA 138

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E    P+              GR  +AM+L + M R+G  PD +  S+L
Sbjct: 139 EMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSL 190



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +    +AAL++  ++  +G +P++ TYNT++       + DEA++L  ++      P+
Sbjct: 54  LGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPD 113

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI    K GR+ +A  +F++M E+G   +  TY+ LI G  K    + A ++ E
Sbjct: 114 VRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLE 173

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM  +   P++             G   +A +L+  M R G  PD +  + L D
Sbjct: 174 EMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMD 227



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++TYN+++       + +EA  LFE+L   +  P+ ++++ LI++  + G+ + A  +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
            ++M  KG K N+ TY+ L+D   K+     A  +  EM +N   P++            
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           AGR +EA  L+  M   G +PD    ++L  Y L   G  +  +
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLI-YGLGKVGRSQKAM 169



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 67/126 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +++A  LF ++   G++PD+ TY +II       ++D+A +LF ++    L P+
Sbjct: 369 LGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPD 428

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+   +++  + GR  +A  +F  M E G   +V TY  L+ G  K++ +  A  + +
Sbjct: 429 VITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLK 488

Query: 122 EMCENN 127
           E+ E  
Sbjct: 489 ELIEQG 494



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 65/127 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  L  +L ++G   D + ++  +    S   +DEA +L +      L P 
Sbjct: 474 LSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPG 533

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + ++  LIDA  K GR+ +A      + E+G K ++V+YS LI    ++  + +AF++ E
Sbjct: 534 ASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLE 593

Query: 122 EMCENNI 128
           EM +  +
Sbjct: 594 EMSKRGL 600



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +D A +LF ++  +GL PD+ITYN  +       R  EA ++FE +    L P
Sbjct: 403 VLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLP 462

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  T+  L+    K   +DDA  +  +++E+G   + + +   ++      N+  A ++ 
Sbjct: 463 DVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELL 522

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +      + P              AGR +EA    + +   G  PD +  S+L
Sbjct: 523 QFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSL 575



 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L    ++D A +L      +GL P   +YN +I       R+ EA    E L     KP
Sbjct: 508 ILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKP 567

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           + ++++ LI A  + G++D A  +  +M ++G K +  +YS L+
Sbjct: 568 DIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ +F ++ D G EPD+ITYN++I  +C   R+ +A +    +    L+PN +T++ 
Sbjct: 302 LTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYST 361

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDAFCK G + +A   F  M+  G + N  TY+ LID   K  ++  AF +  EM +  
Sbjct: 362 LIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAG 421

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNG 150
           ++ NI             GR  EA +L+ ++L+ G
Sbjct: 422 VNLNIVTYTALLDGLCEDGRMREAEELFGALLKAG 456



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 12/183 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   ++ A+ +  ++  + L+PD++ Y T I G C  N +++++ +  ++    L  NS
Sbjct: 472 IKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANS 531

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +T LIDA+ K G+  +A  +  +M + G K  VVTY  LIDG  K   ++ A   ++ 
Sbjct: 532 YIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDH 591

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M  N + PNI                 EA  L++ ML  GI PD L+ ++L D N++   
Sbjct: 592 MTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGN 651

Query: 171 SQE 173
             E
Sbjct: 652 PGE 654



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 23/164 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+AA  LF ++  +GL PDI+TYN++I GY  +  L  AV +FE++     +P+
Sbjct: 261 LAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPD 320

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+ FCK  R+  A      M ++G + NVVTYS LID + K            
Sbjct: 321 VITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCK------------ 368

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
                      AG   EA + +  M+R G+ P+    ++L D N
Sbjct: 369 -----------AGMLLEANKFFVDMIRVGLQPNEFTYTSLIDAN 401



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ D G++  ++TY  +I G C +  + +AV+ F+ +T   L+PN + +T LID
Sbjct: 550 AVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALID 609

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   +++A  +F++ML+KG   + + Y+ LIDG  K  N   A  +   M E  +  
Sbjct: 610 GLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMEL 669

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLL 157
           ++             G+   A  L D MLR GI+PD +L
Sbjct: 670 DLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVL 708



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K F  +   GL+P+  TY ++I   C +  L+EA +L  ++    +  N +T+T L+D
Sbjct: 375 ANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLD 434

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C++GRM +A  +F  +L+ G   N   Y+ L  GY K++ M+ A D+ EEM + N+ P
Sbjct: 435 GLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKP 494

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           ++    T            ++M +   M+  G+  +  + +TL D   +   + E
Sbjct: 495 DLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTE 549



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  ++ ++ +  ++ D GL  +   Y T+I  Y  + +  EAV L +++  + +K  
Sbjct: 506 LCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKIT 565

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LID  CK G +  A   F  M   G + N++ Y+ LIDG  K+  ++ A +++ 
Sbjct: 566 VVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFN 625

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM +  ISP+              G P EA+ L + M+  G+  D
Sbjct: 626 EMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELD 670



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ F  +T  GL+P+I+ Y  +I G C  + L+EA  LF ++    + P+ + +T LID
Sbjct: 585 AVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLID 644

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K G   +A  + ++M+E G + ++  Y+ LI G+ +   ++ A  + +EM    I P
Sbjct: 645 GNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIP 704

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIM 152
           +              G   EA+ L+D M R G++
Sbjct: 705 DQVLCICLLRKYYELGDINEALALHDDMARRGLI 738



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +  A +LFG L   G   +   Y ++  GY     +++A+ + E++    LKP+
Sbjct: 436 LCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +   I   C++  ++D+  +  +M++ G  AN   Y+ LID YFK      A ++ +
Sbjct: 496 LLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQ 555

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  I   +             G   +A++ +D M RNG+ P+ ++ + L D
Sbjct: 556 EMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALID 609



 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A + F ++    + P + + N ++      ++   A+  F+ +    L P+  T+ +
Sbjct: 197 LEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNM 256

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I    +EG ++ A  +F +M  KG + ++VTY+ LIDGY K   +  A  V+EEM +  
Sbjct: 257 VIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAG 316

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++              R  +A +    M + G+ P+ +  STL D
Sbjct: 317 CEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLID 364



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 62/121 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  LF ++ D+G+ PD + Y ++I G        EA+ L  ++  + ++ +   +T 
Sbjct: 617 LEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTS 676

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F + G++  A  +  +ML KG   + V   CL+  Y++  ++  A  ++++M    
Sbjct: 677 LIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRG 736

Query: 128 I 128
           +
Sbjct: 737 L 737


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ H   A  LF ++ D+G+ PD+ITY+ +I  +C   R  +A QL   +   Q+ P+
Sbjct: 86  LCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPD 145

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LI+A  KEG++ +A  ++  ML +G     +TY+ +IDG+ K   +  A  + +
Sbjct: 146 VVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLD 205

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M   + SP++            A R    M+++  M R GI+ + +  +TL
Sbjct: 206 SMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTL 257



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 80/130 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  +  A +++G +  RG+ P  ITYN++I G+C  +RL++A ++ + +      P+
Sbjct: 156 LVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPD 215

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LI+ +CK  R+D+   +F +M  +G  AN VTY+ LI G+ +  ++ +A D+  
Sbjct: 216 VVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLN 275

Query: 122 EMCENNISPN 131
            M  + ++PN
Sbjct: 276 VMISSGVAPN 285



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++ + G +P    Y TII G C +   + A+ L  K+    +K + + +  +ID
Sbjct: 29  ALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIID 84

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G    A  +F++M +KG   +V+TYS +ID + +S     A  +  +M E  I+P
Sbjct: 85  RLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINP 144

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G+ +EA ++Y  MLR GI P  +  +++ D
Sbjct: 145 DVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMID 189



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           ++AL L  ++ +  ++  ++ YN II   C       A  LF ++    + P+ IT++ +
Sbjct: 58  ESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM 117

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID+FC+ GR  DA  +   M+E+    +VVT+S LI+   K   +  A ++Y +M    I
Sbjct: 118 IDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 129 SPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P        I G     R  +A ++ DSM      PD +  STL
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTL 222



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 67/120 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A ++   +  +   PD++T++T+I GYC   R+D  +++F ++    +  N++
Sbjct: 193 KQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTV 252

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI  FC+ G +D A  + + M+  G   N +T+  ++      + ++ AF + E++
Sbjct: 253 TYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDL 312



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 16/117 (13%)

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           +P+ +TFT L++  C EGR+  A  +  +M+E+G +     Y  +I+G  K  + +SA +
Sbjct: 7   RPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALN 62

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  +M E +I  ++             G    A  L+  M   GI PD +  S + D
Sbjct: 63  LLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMID 119


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 79/124 (63%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  D I +N+II  +C   R+ E+ +LF+ +  + +KPN IT++ L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTL 520

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+AT + + M+  G K + VTY+ LI+GY K   M+ A  ++ EM  + +
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 129 SPNI 132
           SP+I
Sbjct: 581 SPDI 584



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 48/214 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++P+IITY+T+I GYC   ++DEA +L   +  V +KP+ +
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y   
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 121 ----------------EEMCENNISP---------------------NI-------AGRP 136
                             +C+NN++                      NI        GR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            EA  L+ ++  NG++PD    S +A+ NL   G
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAE-NLIEQG 703



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ P+  TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  MF  M ++G K  + TY  L+ GY     +     + +
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I PN              G+  +AM ++  M + G+ PD +   T+
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFT 66
           DA   +  ++T  G  P++ +YN ++ G C  NR  EA++L + +        P+ +++T
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+ F KEG +D A   + +ML++G   NVVTY+ +I    K+Q M  A +V   M +N
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKN 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            + PN             +G+P EA+     M  +G+ PD +  ++L DY
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + PN   F+ILI 
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+G++D A ++FSKM ++G   + VTY  +I    KS  ++ A   +E+M +  +SP
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                        I  +  +A +L   ML  GI  D +  +++ D
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID 487



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  LD A   + ++ DRG+ P+++TYN+II   C    +D+A+++   +    + PN
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++  +C  G+  +A     KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P I             G   E   L D M+RNGI P+  + S L
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL PD +TY T+I   C   R+++A++ FE++   +L P +I
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI + C   + D A  +  +ML++G   + + ++ +ID + K   +  +  +++ M
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + PNI            AG+  EA +L  SM+  G+ PD +  +TL
Sbjct: 506 VRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A++ F Q+ D  L P  I YN++I   C  ++ D+A +L  ++    +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++I F  +ID+ CKEGR+ ++  +F  M+  G K N++TYS LIDGY  +  M  A  + 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLL 537

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
             M    + P+       I G     R  +A+ L+  M  +G+ PD
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL+L   + D G +  PD+++Y T+I G+     LD+A   + ++    + PN +T+  +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSI 240

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A CK   MD A  + + M++ G   N  TY+ ++ GY  S   K A    ++M  + +
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGV 300

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++             GR TEA +++DSM + G+ P+     TL
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T+ G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GR D+A  +F+ +   G   +V TYS + +   +   ++   D++  M EN  +
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCT 721

Query: 130 PN 131
            N
Sbjct: 722 AN 723



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 53/198 (26%)

Query: 10  AALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           AA+  + ++   G   + P++ TY  +I   C   RLD        +     + ++I FT
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 67  ILIDAFCKEGRMDDAT-MMFSKMLEKGPKAN----------------------------- 96
            L+   C + R  DA  ++  +M + G   N                             
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 97  --------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
                   VV+Y+ +I+G+FK  ++  A+  Y EM +  I PN+            A   
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAM 250

Query: 137 TEAMQLYDSMLRNGIMPD 154
            +AM++  SM++NG+MP+
Sbjct: 251 DKAMEVLTSMVKNGVMPN 268



 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I     + R DEA  LF  L+   L P+  T++++
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  AN
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTAN 723


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PDI TYNT+I G C    L  A +L  ++     +PN IT+TILID FCKEGR+++A
Sbjct: 402 GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 461

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  +M  KG   N V Y+CLI    K + ++ A +++ +M      P+I         
Sbjct: 462 RNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 521

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                +  EA+ LY  ML  G++ + +  +TL    L+    QE
Sbjct: 522 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQE 565



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  AL +FG ++ +G +PDI T+N++I G C +N+ +EA+ L++ +    +  N
Sbjct: 487 LCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIAN 546

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI AF + G M +A  + + ML +G   + +TY+ LI    ++ N++    ++E
Sbjct: 547 TITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFE 606

Query: 122 EMCE-----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M       NNIS NI        G    A++    M+  G+ PD +  ++L +   ++ 
Sbjct: 607 DMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTG 666

Query: 170 GSQE 173
            +QE
Sbjct: 667 RAQE 670



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  ++  AL+    +  RGL PDI+TYN++I G C   R  EA+ LF+KL    + P+
Sbjct: 627 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 686

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +IT+  LI   CKEG  DDA ++ S+ ++ G   N VT+  L+  + K
Sbjct: 687 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 734



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +L +A +L  ++  +G EP++ITY  +I  +C   RL+EA  + ++++   L  N
Sbjct: 417 LCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALN 476

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  LI A CK+ ++ DA  MF  M  KG K ++ T++ LI G  K    + A  +Y+
Sbjct: 477 AVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQ 536

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           +M    +  N     T    L  + LR G M + L L
Sbjct: 537 DMLLEGVIANTITYNT----LIHAFLRRGAMQEALKL 569



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++   +  ALKL   +  RG   D ITYN +I   C    +++ + LFE +    L PN
Sbjct: 557 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 616

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I+  ILI+  C+ G +  A      M+ +G   ++VTY+ LI+G  K+           
Sbjct: 617 NISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKT----------- 665

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
                       GR  EA+ L+D +   GI PD +  +TL  ++
Sbjct: 666 ------------GRAQEALNLFDKLQVEGICPDAITYNTLISWH 697



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEA-VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           P+++ +NT+I GY S  RLDEA   + E +  V   P+  T+  LI   CK+G +  A  
Sbjct: 369 PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARE 428

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG--------- 134
           + ++M  KG + NV+TY+ LID + K   ++ A +V +EM    ++ N  G         
Sbjct: 429 LMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALC 488

Query: 135 ---RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              +  +A+ ++  M   G  PD    ++L
Sbjct: 489 KDEKVQDALNMFGDMSSKGCKPDIFTFNSL 518



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 17/155 (10%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PD+ T+N  I G C + R+ EA +L +++      PNS T+ +L+   C+ G++D+A
Sbjct: 300 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 359

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-YEEMCENNISPNI-------- 132
            M+ +K+    P  NVV ++ LI+GY     +  A  V +E M      P+I        
Sbjct: 360 RMLLNKV----PNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 415

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                G    A +L + M   G  P+ +  + L D
Sbjct: 416 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILID 450



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  +  +++ +GL  + + YN +I   C   ++ +A+ +F  ++    KP+  
Sbjct: 454 KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 513

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI   CK  + ++A  ++  ML +G  AN +TY+ LI  + +   M+ A  +  +M
Sbjct: 514 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 573

Query: 124 ----CE-NNISPN-------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               C  ++I+ N        AG   + + L++ M+  G+ P+ +  + L +  L  +G+
Sbjct: 574 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN-GLCRTGN 632

Query: 172 QEHCI 176
            +H +
Sbjct: 633 IQHAL 637



 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++  L LF  +  +GL P+ I+ N +I G C    +  A++    +    L P+
Sbjct: 592 LCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 651

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK GR  +A  +F K+  +G   + +TY+ LI  + K      A  +  
Sbjct: 652 IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 711

Query: 122 EMCENNISPN 131
              ++   PN
Sbjct: 712 RGVDSGFIPN 721



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 58/118 (49%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++  +G+ P + T+  ++   C +N +D A  L + +T     PN+I +  LI A  
Sbjct: 222 VFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALS 281

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           K GR+++   +  +ML  G   +V T++  I G  K   +  A  + + M     +PN
Sbjct: 282 KVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPN 339



 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 38/75 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL LF +L   G+ PD ITYNT+I  +C     D+A  L  +       PN
Sbjct: 662 LCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 721

Query: 62  SITFTILIDAFCKEG 76
            +T+ IL+  F KEG
Sbjct: 722 EVTWYILVSNFIKEG 736



 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 54/150 (36%), Gaps = 12/150 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           EP   +YN ++    + N       +F ++    + P   TF +++ A C    +D A  
Sbjct: 197 EPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACA 256

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG--------- 134
           +   M   G   N + Y  LI    K   +     + EEM      P++           
Sbjct: 257 LLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLC 316

Query: 135 ---RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              R  EA +L D ML  G  P+      L
Sbjct: 317 KMLRIHEAAKLVDRMLLRGFTPNSFTYGVL 346


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 78/128 (60%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A  +  Q+ D G+EPDI+ YN ++ GY    ++ +A  L +++   + +PN+ 
Sbjct: 273 KEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNAT 332

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++T+LI + CK  R+++AT +F +M   G +A+VVTYS LI G+ K   +K  +++ +EM
Sbjct: 333 SYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEM 392

Query: 124 CENNISPN 131
            +    PN
Sbjct: 393 IQQGHFPN 400



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 13/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+++  ++   G EPD   +  ++   C    + EA  LFE +   + KP+   FT 
Sbjct: 208 VHKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR-YRWKPSVKHFTS 266

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +CKEG++ +A  +  +M + G + ++V Y+ L+ GY ++  M  A+D+ +EM    
Sbjct: 267 LLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKR 326

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             PN               R  EA +L+  M  NG   D +  STL
Sbjct: 327 CEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTL 372



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PD+  YNT+I   C L  + E +QL+ ++    L P   TF I+I+ F ++G + +A
Sbjct: 431 GCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMINGFLEQGCLVEA 490

Query: 82  TMMFSKMLEKG--PKANVVTYSCLIDGYFKSQNMKSAFDVY-----EEMCENNIS 129
              F +M+ +G        T   L++   +++ ++ A D +      + C+ N+S
Sbjct: 491 CEYFKEMVGRGLFTAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVS 545



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 67/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A +LF ++   G + D++TY+T+I G+C   ++    +L +++      PN
Sbjct: 341 LCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPN 400

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  ++ A  K+  +++   + ++M + G   ++  Y+ +I    K   +K    ++ 
Sbjct: 401 QVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWN 460

Query: 122 EMCENNISPNI 132
           EM  + +SP +
Sbjct: 461 EMESSGLSPGM 471


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DA LK+F ++  RG +PD  TY T+I G C   R+DEA +LF ++      P  +T+T 
Sbjct: 173 VDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTS 232

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C    +D+A     +M  KG + NV TYS L+DG  K      A +++E M    
Sbjct: 233 LINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG 292

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLL 157
             PN+    T            EA++L D M   G+ PD  L
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGL 334



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A++   ++  +G+EP++ TY++++ G C   R  +A++LFE +     +PN +T+T
Sbjct: 242 NVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYT 301

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   CKE ++ +A  +  +M  +G K +   Y  +I G+      + A +  +EM   
Sbjct: 302 TLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILG 361

Query: 127 NISPN--------------IAG----RPTEAMQLYDSMLRNGI 151
            I+PN              + G     P+ A  LY SM   GI
Sbjct: 362 GITPNRLTWNIHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGI 404



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 48/199 (24%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +L++F ++ D   +P    Y T++      N+L+ A + ++ +  + L P   +  +LI 
Sbjct: 105 SLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIK 164

Query: 71  AFCKE------------------------------------GRMDDATMMFSKMLEKGPK 94
           A C+                                     GR+D+A  +F++M+EK   
Sbjct: 165 ALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCA 224

Query: 95  ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQL 142
             VVTY+ LI+G   S+N+  A    EEM    I PN+             GR  +AM+L
Sbjct: 225 PTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMEL 284

Query: 143 YDSMLRNGIMPDGLLLSTL 161
           ++ M+  G  P+ +  +TL
Sbjct: 285 FEMMMARGCRPNMVTYTTL 303



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A++L  ++  +GL+PD   Y  +I G+C++++  EA    +++    + PN
Sbjct: 307 LCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPN 366

Query: 62  SITFTI-------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            +T+ I       ++   C        T+  S M  +G    V T   L+    K    +
Sbjct: 367 RLTWNIHVKTSNEVVRGLCTNYPSRAFTLYLS-MRSRGISVEVETLDSLVKCLCKKGEFQ 425

Query: 115 SAFDVYEEMCENNISPN 131
            A  + +E+  +   PN
Sbjct: 426 KAVQLVDEIVTDGCIPN 442


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  A K F ++  + + PD ITY T+I G+    ++ E   LF ++    LKP+ +T+T
Sbjct: 378 HVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYT 437

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G M +A  + ++M++ G   N+VTY  LIDG  K   + +A ++ +EM + 
Sbjct: 438 TLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKK 497

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  N+            AG   +A++L   M   GI PD +  +T+ D
Sbjct: 498 GLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVID 546



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 17/173 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE H     +L  Q+  R   PD+++Y+T+I GYC L  L +A++L + +    LKPN 
Sbjct: 274 VKEAH-----RLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNR 328

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  +I   CK G+  +A  +  +M+ +    + V Y+ LI G+FK  ++++A   ++E
Sbjct: 329 YTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDE 388

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+              G+  E   L+  M+  G+ PD +  +TL D
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLID 441



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 51/209 (24%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +++ A+KL  ++   G++PD ITY T+I  YC L  +D+A +L +++    L+P  +
Sbjct: 515 KAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVV 574

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG------------------------------- 92
           TF +L++ FC  G ++D   +   MLEKG                               
Sbjct: 575 TFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRM 634

Query: 93  ------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------ 134
                 P +N  TY+ LI G+ K++N+K A+ +Y+EM E    P +              
Sbjct: 635 RNQGVAPDSN--TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKR 692

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  EA +L++ M  +G++ DG + +   D
Sbjct: 693 KFXEARELFEEMRGHGLVADGEIYNFFVD 721



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+  ++  + + PD + Y T+I G+  L  +  A + F+++   ++ P+ IT+T LI 
Sbjct: 347 AEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQ 406

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F + G++ +   +F +M+ +G K + VTY+ LID Y K+  M +AF ++ EM +  ++P
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP 466

Query: 131 NIA------------GRPTEAMQLYDSMLRNGI 151
           NI             G    A +L D M + G+
Sbjct: 467 NIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 32/175 (18%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++  +GL+ ++  YN+++ G C    +++A++L +++    + P+
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPD 537

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T +IDA+C+ G +D A  +  +ML++G +  VVT++ L++G+              
Sbjct: 538 AITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF-------------- 583

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
             C       + G   +  +L   ML  GI+PD +  +TL          ++HCI
Sbjct: 584 --C-------MLGMLEDGDRLLGWMLEKGIVPDAITYNTLM---------KQHCI 620



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 61/118 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   K++ ++ ++G+ PD  TYN +I G+C    L EA  L++++      P   ++  
Sbjct: 624 MNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNA 683

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           LI  F K+ +  +A  +F +M   G  A+   Y+  +D  ++  +++   ++ +E  E
Sbjct: 684 LIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIE 741



 Score = 35.8 bits (81), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 43/88 (48%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A  L+ ++ ++G  P + +YN +I  +    +  EA +LFE++    L  +  
Sbjct: 655 KARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGE 714

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEK 91
            +   +D   +EG ++    +  + +EK
Sbjct: 715 IYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DA LK+F ++  RG +PD  TY T+I G C   R+DEA +LF ++      P  +T+T 
Sbjct: 173 VDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTS 232

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C    +D+A     +M  KG + NV TYS L+DG  K      A +++E M    
Sbjct: 233 LINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG 292

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLL 157
             PN+    T            EA++L D M   G+ PD  L
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGL 334



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A++   ++  +G+EP++ TY++++ G C   R  +A++LFE +     +PN +T+T
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYT 301

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   CKE ++ +A  +  +M  +G K +   Y  +I G+      + A +  +EM   
Sbjct: 302 TLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILG 361

Query: 127 NISPN------------------IAGRPTEAMQLYDSMLRNGI 151
            I+PN                   A  P+ A  LY SM   GI
Sbjct: 362 GITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGI 404



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 48/199 (24%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +L++F ++ D   +P    Y T++      N+L+ A + ++ +  + L P   +  +LI 
Sbjct: 105 SLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIK 164

Query: 71  AFCKE------------------------------------GRMDDATMMFSKMLEKGPK 94
           A C+                                     GR+D+A  +F++M+EK   
Sbjct: 165 ALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCA 224

Query: 95  ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQL 142
             VVTY+ LI+G   S+N+  A    EEM    I PN+             GR  +AM+L
Sbjct: 225 PTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMEL 284

Query: 143 YDSMLRNGIMPDGLLLSTL 161
           ++ M+  G  P+ +  +TL
Sbjct: 285 FEMMMARGCRPNMVTYTTL 303



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A++L  ++  +GL+PD   Y  +I G+C++++  EA    +++    + PN
Sbjct: 307 LCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPN 366

Query: 62  SITFTI-------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            +T+ I       ++   C        T+  S M  +G    V T   L+    K    +
Sbjct: 367 RLTWNIHVKTSNEVVRGLCANYPSRAFTLYLS-MRSRGISVEVETLESLVKCLCKKGEFQ 425

Query: 115 SAFDVYEEMCENNISPN 131
            A  + +E+  +   P+
Sbjct: 426 KAVQLVDEIVTDGCIPS 442


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 96/175 (54%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +++A+K+  ++   G+ P+++TY TI+ GY S   +  A ++F +L      P+
Sbjct: 211 LCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPD 270

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+TIL++ +C++GR+ DA  +   M E G + N VTY  +++ Y K +    A ++ +
Sbjct: 271 ATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLD 330

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M E    P+             AG+  EA +L+  ML+   MPD  ++STL  +
Sbjct: 331 DMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHW 385



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ P++ T N +I   C  N ++ AV++ +++  + + PN +T+T ++  +   G M +A
Sbjct: 196 GVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNA 255

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             +F ++ ++G   +  TY+ L++GY +   +  A  + ++M EN + PN          
Sbjct: 256 NKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEA 315

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
                +  EA  L D ML    +P   L   + D   ++   +E C
Sbjct: 316 YCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEAC 361



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   ++ A +L+ ++  +   PD    +T+I   C   ++ EA +LF +     + P
Sbjct: 350 VLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAI-P 408

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  LI   C++G + +A  ++  M+EKG K N  TY+ LI G+ K  N K    + 
Sbjct: 409 SLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRIL 468

Query: 121 EEMCENNISPN 131
           EEM +N   PN
Sbjct: 469 EEMLDNRCMPN 479



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L KE  +  A KLFG+  +RG  P ++TYNT+I G C    L EA +L++ +     KP
Sbjct: 385 WLCKEGKVWEARKLFGEF-ERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKP 443

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           N+ T+ +LI  F K G   +   +  +ML+     N  TY+ LI+
Sbjct: 444 NAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIE 488



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 13/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  L  A+KL   + + G+EP+ +TY  ++  YC   +  EA  L + +   Q  P+S 
Sbjct: 283 EQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSA 342

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
               +ID  C+ G++++A  ++ +ML+K    +    S LI    K   +  A  ++ E 
Sbjct: 343 LCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEF 402

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E    P++             G  +EA +L+D M+  G  P+    + L
Sbjct: 403 -ERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNML 451



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A KL+  + ++G +P+  TYN +I G+  +    E +++ E++   +  PN  T+ 
Sbjct: 425 ELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYA 484

Query: 67  ILIDAFCK---EGRMDDATMM 84
           ILI+  CK   EG +D    M
Sbjct: 485 ILIEELCKMGMEGEVDKVVSM 505



 Score = 38.9 bits (89), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 33  IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK- 91
           +I  Y    + D A++ F ++    ++ +  +   L++AF +  R D    MF     K 
Sbjct: 136 VIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKY 195

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA 139
           G   NV T + LI    K  +++SA  V +EM    + PN+             G    A
Sbjct: 196 GVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNA 255

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
            +++  +   G +PD    + L
Sbjct: 256 NKVFGELFDRGWLPDATTYTIL 277


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 93/166 (56%), Gaps = 15/166 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE     A+KL+ ++T R ++PD+ TYN++I G C   R+DEA Q+ + +      P
Sbjct: 253 VFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 312

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  LI+ FCK  R+D+ T +F +M ++G   + +TY+ +I GYF++    +A +++
Sbjct: 313 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 372

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             M   +  PNI              R  +A+ L+++M ++ I  D
Sbjct: 373 SRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 415



 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ + G  PD++ YNTII G C +  +++AV+LF+++    ++ +++T+  L+ 
Sbjct: 158 AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVA 217

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR  DA  +   M+ +    NV+T++ +ID + K      A  +YEEM    + P
Sbjct: 218 GLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDP 277

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             GR  EA Q+ D M+  G +PD +  +TL +
Sbjct: 278 DVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLIN 322



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL + G++   G EPD++T +++I G+C  NR+ +A+ L  K+  +  +P+ + +  +ID
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID 182

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G ++DA  +F +M   G +A+ VTY+ L+ G   S     A  +  +M   +I P
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP 242

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+ +EAM+LY+ M R  + PD    ++L +
Sbjct: 243 NVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN 287



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 15/162 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D   KLF ++  RGL  D ITYNTII GY    R D A ++F ++     +PN  
Sbjct: 326 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNIR 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+   C   R++ A ++F  M +   + ++ TY+ +I G  K  N++ A+D++  +
Sbjct: 383 TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 442

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMP 153
               + P++    T            ++  LY  M  +G++P
Sbjct: 443 SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  R + P++IT+  +I  +    +  EA++L+E++T   + P+  T+  LI+
Sbjct: 228 AARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN 287

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR+D+A  M   M+ KG   +VVTY+ LI+G+ KS+ +     ++ EM +  +  
Sbjct: 288 GLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVG 347

Query: 131 NI------------AGRPTEAMQLYDSM 146
           +             AGRP  A +++  M
Sbjct: 348 DTITYNTIIQGYFQAGRPDAAQEIFSRM 375



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K  + D  + LF  +   G+  D+ +YN +I   C  +R   A+ +  K+     +P+
Sbjct: 79  IAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPD 138

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + LI+ FC+  R+ DA  + SKM E G + +VV Y+ +IDG  K   +  A ++++
Sbjct: 139 VVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 198

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M  + +  +             +GR ++A +L   M+   I+P+ +  + + D
Sbjct: 199 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID 252



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+  + LF ++      P I+ ++ ++         D  + LF  +    +  +  ++ 
Sbjct: 49  NLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYN 108

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I+  C+  R   A  +  KM++ G + +VVT S LI+G+ +   +  A D+  +M E 
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
              P++             G   +A++L+D M R+G+  D +  ++L 
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLV 216


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   L  A +L+ ++ D G +P+I TY ++I G C  ++L E + LF+ +    L P+
Sbjct: 538 FVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPD 597

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T LI  +CK   M  A  +F +M  +G  A+   Y+CLI G+ K   M  A    E
Sbjct: 598 RILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFME 657

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLL 157
           EM    ++P +             G   +AM +Y+SML+ GI PD  L
Sbjct: 658 EMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAPDAKL 705



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL++F  +   G+ P+++T   ++ G+ +   + EA    +K+    + P+  T+ +
Sbjct: 439 LKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRV 498

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CK  + +D   +F+ M+++G   + V YS +IDG+ K+ +++ AF +Y +M +  
Sbjct: 499 IIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEG 558

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
             PNI    +            E M L+  M+  G+ PD +L ++L
Sbjct: 559 TKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSL 604



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ A +LF +L D+G + D I Y+ ++ G C    L+    L+  +      P+
Sbjct: 363 LCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPD 422

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  ++ LI A+C+  ++ +A  +F  M+  G   NVVT + L+ G+     +  AF   +
Sbjct: 423 AYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLD 482

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           ++ +  + P++              +P +   ++  M++ G +PD +L S + D  +++ 
Sbjct: 483 KVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKAL 542

Query: 170 GSQE 173
             QE
Sbjct: 543 DLQE 546



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++   G+ P++++Y++++ G C   R++ A +LF++L     K + I ++I++   C+  
Sbjct: 343 EMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHL 402

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133
            ++    +++ M+      +   YS LI  Y + + +K A +V+E M  + I PN+    
Sbjct: 403 DLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCT 462

Query: 134 ---------GRPTEAMQLYDSMLRNGIMP 153
                    G   EA    D + + G++P
Sbjct: 463 ILVHGFSNEGLIGEAFLFLDKVRQFGVVP 491



 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 84/164 (51%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+++F  +   G  PD+ +Y+ ++ G C    +     +  ++    + PN 
Sbjct: 294 CHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNL 353

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++++ L+   C+ GR++ A  +F ++ ++G K + + YS ++ G  +  +++  +D++ +
Sbjct: 354 VSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWND 413

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           M  +N  P+     +            EA+++++ M+ +GI P+
Sbjct: 414 MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPN 457



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDD 80
           G+ P+  TY T + G C   ++  A   F ++ C +  P N+  F  +I  FC +G++  
Sbjct: 243 GVRPNAATYATYLYGLCHAKQVKSAWN-FLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHK 301

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A  +F  M + G   +V +YS L+DG  K  ++ + + +  EM  N I+PN+        
Sbjct: 302 AIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLH 361

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               AGR   A +L+  +   G   D ++ S +
Sbjct: 362 GLCRAGRVELAFELFKRLKDQGFKHDHIVYSIV 394



 Score = 39.7 bits (91), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 41  NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE--KGPKANVV 98
           N++  A  LF+ +      PN  ++++L+  +    ++     +        +G + N  
Sbjct: 190 NQIMYARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAA 249

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNIA-------GRPTEAMQLYDSM 146
           TY+  + G   ++ +KSA++  + +C+     NN   N         G+  +A++++D M
Sbjct: 250 TYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGM 309

Query: 147 LRNGIMPDGLLLSTLAD 163
            + G +PD    S L D
Sbjct: 310 KKCGFVPDVHSYSILVD 326


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 93/166 (56%), Gaps = 15/166 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + +KE     A+KL+ ++T R ++PD+ TYN++I G C   R+DEA Q+ + +      P
Sbjct: 194 VFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 253

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  LI+ FCK  R+D+ T +F +M ++G   + +TY+ +I GYF++    +A +++
Sbjct: 254 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 313

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             M   +  PNI              R  +A+ L+++M ++ I  D
Sbjct: 314 SRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 356



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ + G  PD++ YNTII G C +  +++AV+LF+++    ++ +++T+  L+ 
Sbjct: 99  AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVA 158

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR  DA  +   M+ +    NV+T++ +ID + K      A  +YEEM    + P
Sbjct: 159 GLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDP 218

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             GR  EA Q+ D M+  G +PD +  +TL
Sbjct: 219 DVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 261



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL + G++   G EPD++T +++I G+C  NR+ +A+ L  K+  +  +P+ + +  +ID
Sbjct: 64  ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID 123

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G ++DA  +F +M   G +A+ VTY+ L+ G   S     A  +  +M   +I P
Sbjct: 124 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP 183

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G+ +EAM+LY+ M R  + PD    ++L
Sbjct: 184 NVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL 226



 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 15/162 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D   KLF ++  RGL  D ITYNTII GY    R D A ++F ++     +PN  
Sbjct: 267 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNIR 323

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+   C   R++ A ++F  M +   + ++ TY+ +I G  K  N++ A+D++  +
Sbjct: 324 TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 383

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMP 153
               + P++    T            ++  LY  M  +G++P
Sbjct: 384 SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  R + P++IT+  +I  +    +  EA++L+E++T   + P+  T+  LI+
Sbjct: 169 AARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLIN 228

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR+D+A  M   M+ KG   +VVTY+ LI+G+ KS+ +     ++ EM +  +  
Sbjct: 229 GLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVG 288

Query: 131 NI------------AGRPTEAMQLYDSM 146
           +             AGRP  A +++  M
Sbjct: 289 DTITYNTIIQGYFQAGRPDAAQEIFSRM 316



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K  + D  + LF  +   G+  D+ +YN +I   C  +R   A+ +  K+     +P+
Sbjct: 20  IAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPD 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + LI+ FC+  R+ DA  + SKM E G + +VV Y+ +IDG  K   +  A ++++
Sbjct: 80  VVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 139

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M  + +  +             +GR ++A +L   M+   I+P+ +  + + D  ++  
Sbjct: 140 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 199

Query: 170 GSQE 173
              E
Sbjct: 200 KFSE 203



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I+ ++ ++         D  + LF  +    +  +  ++ I+I+  C+  R   A  +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             KM++ G + +VVT S LI+G+ +   +  A D+  +M E    P++            
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            G   +A++L+D M R+G+  D +  ++L 
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLV 157


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 14/158 (8%)

Query: 11  ALKLFGQLTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL L   +  +G    PD++ Y+T+I G+ +     +A  LF ++T   +KP+ +T+ ++
Sbjct: 247 ALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLI 306

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           IDA CK   MD A ++  +M   G + + VTYSC+I GY     +K A  ++ EM +  +
Sbjct: 307 IDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGL 366

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            PNI             GR  EA + +DSM   G  PD
Sbjct: 367 IPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPD 404



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 77/132 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  +F   TD G  P +IT+N++I GYC + ++D+A ++ + +  V ++P+
Sbjct: 556 LCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPD 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D + K GR++D   +F +M  KG K N VTY  ++ G F++    +A   + 
Sbjct: 616 IVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFH 675

Query: 122 EMCENNISPNIA 133
           EM E+  +  ++
Sbjct: 676 EMIESGTTVTVS 687



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +  Q+T  G +PD +TY+ +I GY +L RL EA ++F ++    L PN
Sbjct: 310 LCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPN 369

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T    + + CK GR  +A   F  M  KG K ++ +Y  L+ GY           ++ 
Sbjct: 370 IVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFN 429

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I+ N              G   +AM ++  M + G+ PD +  ST+
Sbjct: 430 SMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTV 481



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A + F  +T +G +PDI +Y T++ GY S     + + LF  +    +  N
Sbjct: 380 LCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAAN 439

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              FTILI A+ K G +DDA ++F++M ++G   +VVTYS +I  + +   +  A + + 
Sbjct: 440 CHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFN 499

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGI-MPDGLLLSTL 161
           +M    I PN A            G   +A +L   M+  GI  PD +  S++
Sbjct: 500 QMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSV 552



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 92/173 (53%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+ +F ++  +G+ PD++TY+T+I  +  + RL +A++ F ++    ++PN+ 
Sbjct: 452 KRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTA 511

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            ++ +I  FC  G +  A  + S+M+ KG P+ ++V +S +I+   K   +  A D+++ 
Sbjct: 512 VYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDL 571

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +    P +             G+  +A ++ D+M   G+ PD +  +TL D
Sbjct: 572 ATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLD 624



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 13/156 (8%)

Query: 8   LDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           L  A +L  ++ ++G+  PDI+ ++++I   C   R+ +A  +F+  T +  +P  ITF 
Sbjct: 526 LVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFN 585

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +C  G+MD A  +   M   G + ++VTY+ L+DGYFK+  +     ++ EM   
Sbjct: 586 SLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRK 645

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNG 150
            + PN             AGR   A + +  M+ +G
Sbjct: 646 GVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+   +   G+EPDI+TYNT++ GY    R+++ + LF ++    +KPN++T+ I
Sbjct: 597 MDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    + GR   A   F +M+E G    V  Y  ++ G  ++     A  +++++   N
Sbjct: 657 MLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMN 716

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +  +I              R  EA +L+ ++  +G++P+
Sbjct: 717 VKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPN 755



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 50/196 (25%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKPNSITFTI 67
           D  L LFG +   GL+ D IT NT++   C  NR +EAV  L  +++ +   PN+++++I
Sbjct: 174 DLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSI 233

Query: 68  LIDAFC-------------------------------------KEGRMDDATMMFSKMLE 90
           ++ A C                                      EG    A  +F +M  
Sbjct: 234 VLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTR 293

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTE 138
           +G K +VVTY+ +ID   K++ M  A  V  +M  +   P+              GR  E
Sbjct: 294 QGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKE 353

Query: 139 AMQLYDSMLRNGIMPD 154
           A +++  M + G++P+
Sbjct: 354 AAKMFREMKKRGLIPN 369



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +     AA K F ++ + G    +  Y  I+ G C  N  DEA+ LF+KL  + +K +
Sbjct: 661 LFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFS 720

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                 +I+A  K  R ++A  +F+ +   G   N  TY  +I    K   ++ A +++ 
Sbjct: 721 ITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFS 780

Query: 122 EMCENNISPN 131
            M ++ I P 
Sbjct: 781 SMEKSGIVPG 790


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 48/214 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITY+T+I GYC   ++DEA +L   +  V +KP+ +
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y   
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 121 ----------------EEMCENNISP---------------------NI-------AGRP 136
                             +C+NN++                      NI        GR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            EA  L+ ++  NG++PD    S +A+ NL   G
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAE-NLIEQG 703



 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 79/124 (63%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  D I +N+II  +C   R+ E+ +LF+ +  + +KP+ IT++ L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+AT + + M+  G K + VTY+ LI+GY K   M+ A  ++ EM  + +
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 129 SPNI 132
           SP+I
Sbjct: 581 SPDI 584



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFT 66
           DA   +  ++T  G  P++ +YN ++ G C  NR  EA++L + +        P+ +++T
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+ F KEG +D A   + +ML++G   NVVTYS +I    K+Q M  A +V   M +N
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            + PN             +G+P EA+     M  +G+ PD +  ++L DY
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + PN   F+ILI 
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+G++D A ++FSKM ++G   + VTY  +I    KS  ++ A   +E+M +  +SP
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 131 -NIA----------------------------------------------GRPTEAMQLY 143
            NI                                               GR  E+ +L+
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ PD +  STL D
Sbjct: 503 DLMVRIGVKPDIITYSTLID 522



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ P+  TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  MF  M ++G K  + TY  L+ GY     +     + +
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I PN              G+  +AM ++  M + G+ PD +   T+
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  LD A   + ++ DRG+ P+++TY++II   C    +D+A+++   +    + PN
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++  +C  G+  +A     KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P I             G   E   L D M+RNGI P+  + S L
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL+L   + D G +  PD+++Y T+I G+     LD+A   + ++    + PN +T++ +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A CK   MD A  + + M++ G   N  TY+ ++ GY  S   K A    ++M  + +
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGV 300

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++             GR TEA +++DSM + G+ P+     TL
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL PD +TY T+I   C   R+++A++ FE++   +L P +I
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI + C   + D A  +  +ML++G   + + ++ +ID + K   +  +  +++ M
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P+I            AG+  EA +L  SM+  G+ PD +  +TL
Sbjct: 506 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A++ F Q+ D  L P  I YN++I   C  ++ D+A +L  ++    +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++I F  +ID+ CKEGR+ ++  +F  M+  G K +++TYS LIDGY  +  M  A  + 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
             M    + P+       I G     R  +A+ L+  M  +G+ PD
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T+ G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GR D+A  +F+ +   G   +V TYS + +   +   ++   D++  M EN  +
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCT 721

Query: 130 PN 131
            N
Sbjct: 722 AN 723



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 53/198 (26%)

Query: 10  AALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           AA+  + ++   G   + P++ TY  +I   C   RLD        +     + ++I FT
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 67  ILIDAFCKEGRMDDAT-MMFSKMLEKGPKAN----------------------------- 96
            L+   C + R  DA  ++  +M + G   N                             
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 97  --------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT----------- 137
                   VV+Y+ +I+G+FK  ++  A+  Y EM +  I PN+    +           
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250

Query: 138 -EAMQLYDSMLRNGIMPD 154
            +AM++  SM++NG+MP+
Sbjct: 251 DKAMEVLTSMVKNGVMPN 268



 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I     + R DEA  LF  L+   L P+  T++++
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  AN
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTAN 723


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 93/163 (57%), Gaps = 12/163 (7%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           ++L  Q+ + G  PD+ITY T+I G+C    +DEAV L + +     +PN+I++TI++  
Sbjct: 385 IELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKG 444

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            C   R  DA  + S+M+E+G   N VT++ +I+   K   ++ A ++ ++M  N  SP+
Sbjct: 445 LCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPD 504

Query: 132 I------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           +            AG+  EA++L + M+  G+ P+ ++ S++A
Sbjct: 505 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 547



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA----------------- 46
           KE HL+ A ++  ++   GL+P+++ YNT++ G CS  R ++A                 
Sbjct: 307 KEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDV 366

Query: 47  ------------------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                             ++L E++      P+ IT+T +I+ FCKEG +D+A M+   M
Sbjct: 367 TFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSM 426

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
              G + N ++Y+ ++ G   ++    A D+  +M E   SPN              G  
Sbjct: 427 AACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLV 486

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +A++L   ML NG  PD +  ST+ D
Sbjct: 487 EQAIELLKQMLLNGCSPDLISYSTVID 513



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 13/175 (7%)

Query: 8   LDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +D AL+L   L T  G +PD+++YN ++ G C   R      L E++  V   PN +TF 
Sbjct: 205 VDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFN 264

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+ G  +    + ++M++ G   ++  Y+ ++DG  K  +++ A ++ + M   
Sbjct: 265 TLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSY 324

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            + PN+            A R  +A +L   M  N    D +  + L D+  Q+ 
Sbjct: 325 GLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNG 379



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 47/199 (23%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN----------- 61
           ++  Q+ D G  PDI  Y T++ G C    L+ A ++ +++    LKPN           
Sbjct: 281 QVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGL 340

Query: 62  ------------------------SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
                                    +TF IL+D FC+ G +     +  +MLE G   +V
Sbjct: 341 CSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDV 400

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDS 145
           +TY+ +I+G+ K   +  A  + + M      PN             A R  +A  L   
Sbjct: 401 ITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQ 460

Query: 146 MLRNGIMPDGLLLSTLADY 164
           M+  G  P+ +  +T+ ++
Sbjct: 461 MIEQGCSPNPVTFNTVINF 479



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 60/116 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL+L   + ++G+ P+ I Y++I        R++  +Q+F+ +  V ++ +++ +  +
Sbjct: 522 DEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAV 581

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           I + CK G  D A    + M+  G   N  TY+ LI G      +K A ++  E+C
Sbjct: 582 ISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELC 637



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++L  Q+   G  PD+I+Y+T+I G     + DEA++L   +    + PN
Sbjct: 480 LCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 539

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +  A  KEGR++    MF  + +   +++ V Y+ +I    K      A +   
Sbjct: 540 TIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLA 599

Query: 122 EMCENNISPN 131
            M  +   PN
Sbjct: 600 YMVSSGCMPN 609



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++  +++F  + D  +  D + YN +I   C     D A++    +      PN
Sbjct: 550 LSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPN 609

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+TILI     EG + +A  M +++  KG
Sbjct: 610 ESTYTILIRGLASEGFVKEAQEMLTELCSKG 640



 Score = 42.7 bits (99), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YN ++ GYC   +L  A +L      V + PN+ T+  ++ A C  GR+ DA  +  +M 
Sbjct: 86  YNAMVSGYCRAGQLASARRLAAS---VPVPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 90  EKG 92
            +G
Sbjct: 143 RRG 145


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++AA  LF ++  RGL PD +TYN++I G+  + RLD+ V  FE++  +  +P+ I
Sbjct: 107 KEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 166

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK G++      F +M   G K NVV+YS L+D + K   M+ A   Y +M
Sbjct: 167 TYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 226

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + PN              G  ++A +L + ML+ G+  + +  + L D
Sbjct: 227 RRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALID 278



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 74/126 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L   L+ F ++   GL+P++++Y+T++  +C    + +A++ +  +  V L PN  T+T 
Sbjct: 181 LPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 240

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA+CK G + DA  + ++ML+ G + NVVTY+ LIDG    +N      + +EM E +
Sbjct: 241 LIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELD 300

Query: 128 ISPNIA 133
           I   + 
Sbjct: 301 IKVTVV 306



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   + F  +   G +P + TYN +I   C    ++ A  LFE++    L P+++T+  +
Sbjct: 77  DGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSM 136

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K GR+DD    F +M +   + +V+TY+ LI+ + K   +    + + EM  N +
Sbjct: 137 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGL 196

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN+    T            +A++ Y  M R G++P+    ++L D
Sbjct: 197 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 243



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+K +  +   GL P+  TY ++I  YC +  L +A +L  ++  V ++ N +
Sbjct: 212 KEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVV 271

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  C      +   +  +M+E   K  VVT+  LIDG  K++ +  A D +  +
Sbjct: 272 TYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRI 331

Query: 124 CEN-NISPNIA-----------GRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             +  +  N A           G   E A  L++ M + G++PD    ++L D N +
Sbjct: 332 SNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFK 388



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI    ++ A++ F ++    + P   + N ++  +  L + D   + F+ +     KP
Sbjct: 34  VLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKP 93

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              T+ I+ID  CKEG ++ A  +F +M  +G   + VTY+ +IDG+ K   +      +
Sbjct: 94  TVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFF 153

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM +    P++             G+  + ++ +  M RNG+ P+ +  STL D
Sbjct: 154 EEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVD 208



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 8   LDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +  A+  FG+++ D GL+ +   Y  +I G C  N+++ A  LFE++    L P+   +T
Sbjct: 321 VSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYT 380

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D   K+G + +A  +  KM+E G K +++ Y+ L+ G      ++ A    EEM   
Sbjct: 381 SLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 440

Query: 127 NISPN 131
            I P+
Sbjct: 441 GIHPD 445


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A   F ++  +G  PDI+ Y T+I G C + RLD+A+  F ++    L P+ ITF 
Sbjct: 442 RLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFN 501

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F   G+ + A  +F +M+++G   NV T++ +ID  FK   +  A  +++ M   
Sbjct: 502 TLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRA 561

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN            IAG   E M+L D ML  G+ P  +  +TL D
Sbjct: 562 GAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLD 610



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  +  Q+ D  + P+  TYN++I GY S  +  EAV++ ++++    +PN +T+++
Sbjct: 303 MDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSM 362

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G   +A  +F+ M++ G K N  TY  L+ GY    N+    +V + M +N 
Sbjct: 363 LIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNG 422

Query: 128 ISP-----NIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P     NI        GR  EA   ++ M + G MPD +  +T+ D
Sbjct: 423 MRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVID 470



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +   G+ P    +N  I  YC   RLDEA   F K+      P+ + +T +ID  CK GR
Sbjct: 418 MVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGR 477

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           +DDA   F +M++ G   +++T++ LI G+      + A +++ EM +  I PN+     
Sbjct: 478 LDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNS 537

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   G+ TEA +L+D M R G  P+ +  +T+
Sbjct: 538 MIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTM 573



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFT 66
           DA   +  ++ + G  PD+ +Y T++ G C+  + +EA +L   +        PN +++T
Sbjct: 197 DAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYT 256

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  F KEG +  A  +F KML+ G   NVVT + +IDG  K Q M  A  V ++M + 
Sbjct: 257 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 316

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I PN             +G+ TEA+++   M R+G  P+ +  S L D
Sbjct: 317 HIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLID 365



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  +  A  LF ++ D G+ P+++T N++I G C +  +D+A  + +++    + PN
Sbjct: 262 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPN 321

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI  +   G+  +A  +  +M   G + NVVTYS LID   KS     A +++ 
Sbjct: 322 CTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFN 381

Query: 122 EMCENNISPN-------IAGRPTEA-----MQLYDSMLRNGIMP 153
            M ++   PN       + G  TE        + D M++NG+ P
Sbjct: 382 SMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRP 425



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +   G +P+  TY +++ GY +   L +   + + +    ++P    F I I 
Sbjct: 376 AREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIY 435

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+CK GR+D+A++ F+KM ++G   ++V Y+ +IDG  K   +  A   + +M ++ +SP
Sbjct: 436 AYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSP 495

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +I             G+  +A +L+  M+  GI P+
Sbjct: 496 DIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPN 531



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P++++Y T+I G+     + +A  LF K+    + PN +T   +ID  CK   MD A  +
Sbjct: 250 PNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 309

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             +M+++    N  TY+ LI GY  S     A  + +EM  +   PN+            
Sbjct: 310 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCK 369

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +G   EA ++++SM+++G  P+     +L
Sbjct: 370 SGLHAEAREIFNSMIQSGQKPNASTYGSL 398



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A KLF  +   G +P++++YNT+I GY     + E ++L + +  + LKP 
Sbjct: 542 LFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPT 601

Query: 62  SITFTIL-------------------IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           ++TF  L                   ID+ C++GR++D   +F +ML K  K + +T + 
Sbjct: 602 AVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENI 661

Query: 103 LIDG 106
            + G
Sbjct: 662 KLRG 665



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 18/171 (10%)

Query: 11  ALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           A+ +F ++   G   + PDI T+  +I   C    L+       ++    L+  ++TFT 
Sbjct: 125 AVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTP 184

Query: 68  LIDAFCKEGRMDDA-TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE- 125
           L+   C E R  DA  ++  +M E G   +V +Y+ L+ G    +  + A ++   M E 
Sbjct: 185 LLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAED 244

Query: 126 -NNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +N  PN+    T            +A  L+  ML +GI P+ +  +++ D
Sbjct: 245 GDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVID 295


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           + HL AAL +       G+EP +ITY+T+I GY  L    EA+ LF+++    ++P+ I 
Sbjct: 275 QMHLGAAL-METMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGIC 333

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  ++D   + G  D+A  +   M E G   ++VTY+ L+D Y K    + A  + EEM 
Sbjct: 334 YNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMK 393

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +   SPNI             G   +AM L+  + + G+ PD +L STL D
Sbjct: 394 QRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVD 444



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 10/172 (5%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D A  +   + + G   DI+TYN ++  Y    +  EA+ L E++      PN +T++
Sbjct: 346 NFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYS 405

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LIDA+CK G   DA  +F  + + G + +VV YS L+DG  K+ +   A  + EEM +N
Sbjct: 406 ALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADN 465

Query: 127 NISPNIA---------GRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQS 168
            I PN+          GR    ++     LR  ++P   +LL    DY+ QS
Sbjct: 466 GIRPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQS 517



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 1/122 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++ ++G+ PD IT+NT+I      NR +E  ++F ++    +  + +T+  LI 
Sbjct: 209 ALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIA 268

Query: 71  AFCKEGRMD-DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            +C+ G+M   A +M +     G + +V+TYS +IDGY K      A  +++EM   N+ 
Sbjct: 269 TYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVE 328

Query: 130 PN 131
           P+
Sbjct: 329 PD 330



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 41/170 (24%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+     A+ L  ++  RG  P+I+TY+ +I  YC      +A+ LF+ +    L+P+ +
Sbjct: 378 KQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVV 437

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY---------------- 107
            ++ L+D  CK G  D+A  +  +M + G + NV+TY+ L+D Y                
Sbjct: 438 LYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKNFPKLRF 497

Query: 108 ---------------FKSQNMK----------SAFDVYEEMCENNISPNI 132
                          +  Q++           +A  V+ EM +N + PN+
Sbjct: 498 FLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNV 547



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 14/168 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  +F +    G   ++  Y+++IC Y    +L +AV++FE +  V  KPN + +  +
Sbjct: 138 DWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAV 196

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           IDA  K G    A  +F +MLE+G   + +T++ LI    ++   +    ++ EM E  I
Sbjct: 197 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 256

Query: 129 SPN-------IA-----GRPTEAMQLYDSMLR-NGIMPDGLLLSTLAD 163
           + +       IA     G+      L ++M + +GI P  +  ST+ D
Sbjct: 257 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMID 304



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 13/153 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P+++ YN +I           A+++F ++    + P+ ITF  LI A  +  R ++   
Sbjct: 187 KPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDR 246

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNIA--------- 133
           +F++M E+G   + VTY+ LI  Y +   M     + E M +++ I P++          
Sbjct: 247 IFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGY 306

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G   EA+ L+  M    + PDG+  +T+ D
Sbjct: 307 AKLGLAHEAIALFQEMRNQNVEPDGICYNTMVD 339



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 42/158 (26%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA + LF  +   GL+PD++ Y+T++ G C     DEA+ L E++    ++PN IT+ 
Sbjct: 417 HRDA-MALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYN 475

Query: 67  ILIDAF---C--------------------------------------KEGRMDDATMMF 85
            L+DA+   C                                      K+  +  A  +F
Sbjct: 476 SLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVF 535

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +M + G K NVVT+S +++      +++ A  + E M
Sbjct: 536 REMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAM 573



 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T TI I +  + GR D A ++F + +  G   NV  YS LI  Y +S  +  A +++
Sbjct: 121 DKVTSTI-ISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIF 179

Query: 121 EEM---CENNI--------SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M   C+ N+        + +  G    A++++  ML  G+ PD +  +TL
Sbjct: 180 EAMKVVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTL 231



 Score = 42.0 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTII--CGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           K+  + AA ++F ++   G++P+++T+++I+  C +C+   +++A  L E +     +  
Sbjct: 524 KQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCA--SVEDASSLLEAMRVFDGRVY 581

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +T  +L+    +  R  DA  +F+++   G    V  Y+ L D  +  +  K+A D
Sbjct: 582 GVTHGLLMGFRIRVWR--DAETLFNELTTLGHNTAVAFYNALTDVLWHFEQAKAAKD 636


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           + HL AAL +       G+EP +ITY+T+I GY  L    EA+ LF+++    ++P+ I 
Sbjct: 274 QMHLGAAL-METMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGIC 332

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  ++D   + G  D+A  +   M E G   ++VTY+ L+D Y K    + A  + EEM 
Sbjct: 333 YNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMK 392

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +   SPNI             G   +AM L+  + + G+ PD +L STL D
Sbjct: 393 QRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVD 443



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ LF ++ ++ +EPD I YNT++  +  L   DEA  +   +       + +T+  L+D
Sbjct: 314 AIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLD 373

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           ++ K+G+  +A  +  +M ++G   N++TYS LID Y K    + A  +++++ +  + P
Sbjct: 374 SYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQP 433

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G P EA+ L + M  NGI P+ +  ++L D
Sbjct: 434 DVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLD 478



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 69/126 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D A  +   + + G   DI+TYN ++  Y    +  EA+ L E++      PN +T++
Sbjct: 345 NFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYS 404

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LIDA+CK G   DA  +F  + + G + +VV YS L+DG  K+ +   A  + EEM +N
Sbjct: 405 ALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADN 464

Query: 127 NISPNI 132
            I PN+
Sbjct: 465 GIRPNV 470



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 1/122 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++ ++G+ PD IT+NT+I      NR +E  ++F ++    +  + +T+  LI 
Sbjct: 208 ALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIA 267

Query: 71  AFCKEGRMD-DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            +C+ G+M   A +M +     G + +V+TYS +IDGY K      A  +++EM   N+ 
Sbjct: 268 TYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVE 327

Query: 130 PN 131
           P+
Sbjct: 328 PD 329



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 59/104 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+     A+ L  ++  RG  P+I+TY+ +I  YC      +A+ LF+ +    L+P+ +
Sbjct: 377 KQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVV 436

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
            ++ L+D  CK G  D+A  +  +M + G + NV+TY+ L+D Y
Sbjct: 437 LYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAY 480



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 14/168 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  +F +    G   ++  Y+++IC Y    +L +AV++FE +  V  KPN + +  +
Sbjct: 137 DWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAV 195

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           IDA  K G    A  +F +MLE+G   + +T++ LI    ++   +    ++ EM E  I
Sbjct: 196 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 255

Query: 129 SPN-------IA-----GRPTEAMQLYDSMLR-NGIMPDGLLLSTLAD 163
           + +       IA     G+      L ++M + +GI P  +  ST+ D
Sbjct: 256 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMID 303



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 13/153 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P+++ YN +I           A+++F ++    + P+ ITF  LI A  +  R ++   
Sbjct: 186 KPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDR 245

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNIA--------- 133
           +F++M E+G   + VTY+ LI  Y +   M     + E M +++ I P++          
Sbjct: 246 IFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGY 305

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G   EA+ L+  M    + PDG+  +T+ D
Sbjct: 306 AKLGLAHEAIALFQEMRNQNVEPDGICYNTMVD 338



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 21/139 (15%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA + LF  +   GL+PD++ Y+T++ G C     DEA+ L E++    ++PN IT+ 
Sbjct: 416 HRDA-MALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYN 474

Query: 67  ILIDAFCKEGRM-------------DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
            L+DA+ ++  M                TM+    ++   ++       L+D   K   +
Sbjct: 475 SLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQS-------LVDPKQKQALV 527

Query: 114 KSAFDVYEEMCENNISPNI 132
            +A  V+ EM +N + PN+
Sbjct: 528 LAAARVFREMAKNGVKPNV 546



 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 16/126 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGY---CSLNRLDEAVQLFEKL-------TCVQL 58
           D AL L  ++ D G+ P++ITYN+++  Y   C + R     + F KL         + L
Sbjct: 452 DEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVR-----KTFPKLRFFLLPRVTMLL 506

Query: 59  KPN-SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           KP+       L+D   K+  +  A  +F +M + G K NVVT+S +++      +++ A 
Sbjct: 507 KPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDAS 566

Query: 118 DVYEEM 123
           ++ E M
Sbjct: 567 NLLEAM 572



 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T TI I +  + GR D A ++F + +  G   NV  YS LI  Y +S  +  A +++
Sbjct: 120 DKVTSTI-ISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIF 178

Query: 121 EEM---CENNI--------SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M   C+ N+        + +  G    A++++  ML  G+ PD +  +TL
Sbjct: 179 EAMKVVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTL 230



 Score = 40.8 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTII--CGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           K+  + AA ++F ++   G++P+++T+++I+  C +C+   +++A  L E +     +  
Sbjct: 523 KQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCA--SVEDASNLLEAMRVFDGRVY 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +T  +L+    +  R  DA  +F+++   G    V  Y+ L D  +  +  ++A D
Sbjct: 581 GVTHGLLMGFRIRVWR--DAETLFNELTTLGHNTAVAFYNALTDVLWHFEQAQAAKD 635


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 13/157 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A KLF +    G+  ++ TYN+++   C   ++ EA  ++EK+    ++P+ +++  +
Sbjct: 416 EEASKLFDEAVACGI-ANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNM 474

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C++G MD A  +F +MLEKG K N++TYS L+DGYFK  + + AF +Y+ M   NI
Sbjct: 475 ILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENI 534

Query: 129 SP-----NI-------AGRPTEAMQLYDSMLRNGIMP 153
           +P     NI       AGR +E+      +++ G +P
Sbjct: 535 APSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIP 571



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  +++AL ++ ++   G+ P++ TY  +I G+C  N +D A+++ +++    ++ +
Sbjct: 583 FVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELD 642

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LID FC++G M +A+ + S++ E G   N V YS +I G+ K QNM++A  +++
Sbjct: 643 VTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHK 702

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    I  ++             G+   A +LY  ML  GIMPD +  S L
Sbjct: 703 RMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVL 754



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 81/135 (60%), Gaps = 3/135 (2%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  C    +D+A  +F ++ ++GL+P++ITY+ ++ GY      + A  L++++    
Sbjct: 474 MILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGEN 533

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P+  T  I+I+  CK GR  ++     K++++G     +TY+C+IDG+ K  ++ SA 
Sbjct: 534 IAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSAL 593

Query: 118 DVYEEMCENNISPNI 132
            VY EMC+  +SPN+
Sbjct: 594 AVYTEMCKIGVSPNV 608



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 88/163 (53%), Gaps = 13/163 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+  +  A+K+ G++   G   +++   T++ GYC    LD A++LF+K+    + PN+
Sbjct: 305 MKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNN 364

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+ ++I+  CK G MD A  ++++M  K     V   + LI GY K+++ + A  +++E
Sbjct: 365 VTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDE 424

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
                I+ N+             G+ +EA  +++ M+R G+ P
Sbjct: 425 AVACGIA-NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRP 466



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 18/157 (11%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYC-SLNRLDEAVQL-FEKLTCVQLKP-NSITFT 66
           AAL L  ++ D+G  P  + +  +I G C    ++ EAV++  E L+C   KP N +  T
Sbjct: 277 AALGLLREMRDKGWVPHEVIFTRVI-GVCMKQGKMLEAVKVKGEMLSCG--KPMNVVVAT 333

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  +CK+G +D A  +F KM E G   N VTY+ +I+   K+ NM  A+++Y +M   
Sbjct: 334 TLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNK 393

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGI 151
           +ISP +            A  P EA +L+D  +  GI
Sbjct: 394 DISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI 430



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           +L   G  P  +TYN II G+     ++ A+ ++ ++  + + PN  T+T LI+ FCK  
Sbjct: 563 KLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSN 622

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----- 131
            MD A  +  +M  KG + +V  Y  LIDG+ +  +M +A  +  E+ E  +SPN     
Sbjct: 623 NMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYS 682

Query: 132 --IAG-RPTE----AMQLYDSMLRNGIMPDGLLLSTL 161
             I+G R  +    A+ L+  M+  GI  D  + +TL
Sbjct: 683 SMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTL 719



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 9/153 (5%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++AAL L  ++ + G+  D+  Y T+I G     +L  A +L+ ++    + P+ IT++
Sbjct: 693 NMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYS 752

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   C +G++++A  +   M  K     V  Y+ LI G+FK  N++ AF ++ EM + 
Sbjct: 753 VLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDK 812

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLS 159
            + P+           YD +L NG + DG L S
Sbjct: 813 GLVPDDT--------TYD-ILVNGKVKDGNLFS 836



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 17/178 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  +L + GL P+ + Y+++I G+  L  ++ A+ L +++    +  +   +T LI 
Sbjct: 662 ASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLIS 721

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              KEG++  A+ ++++ML KG   +++TYS LI G      +++A  + E+M    ++P
Sbjct: 722 GLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTP 781

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDG-----LLLSTLADYNLQSSGS 171
            +             G   EA +L++ ML  G++PD      L+   + D NL S  S
Sbjct: 782 TVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNLFSGAS 839



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E  L+ A   F +  ++G+E D   Y+ +I   C       A+ L  ++      P+ 
Sbjct: 235 MREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHE 294

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + FT +I    K+G+M +A  +  +ML  G   NVV  + L+ GY K  ++ SA +++++
Sbjct: 295 VIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDK 354

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M EN I PN              G   +A ++Y+ M    I P    +++L    L++  
Sbjct: 355 MNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARS 414

Query: 171 SQE 173
            +E
Sbjct: 415 PEE 417



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 64/115 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  L  A +L+ ++  +G+ PD+ITY+ +I G C+  +L+ A ++ E +    + P 
Sbjct: 723 LLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPT 782

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
              +  LI    KEG + +A  + ++ML+KG   +  TY  L++G  K  N+ S 
Sbjct: 783 VFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNLFSG 837



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 61/129 (47%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   ++ A+  F  L ++ + P +   N  +      N + EA  ++ K+    +K + 
Sbjct: 165 VKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDC 224

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T +++I A  +EG++++A   F +   KG + +   YS +I+   K  +  +A  +  E
Sbjct: 225 ATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLRE 284

Query: 123 MCENNISPN 131
           M +    P+
Sbjct: 285 MRDKGWVPH 293



 Score = 39.3 bits (90), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 42/100 (42%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
            E D   +N ++  Y    R+++AV  F  L    + P      I +    K   + +A 
Sbjct: 150 FESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREAR 209

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            +++KM  KG K +  T S +I    +   ++ A   + E
Sbjct: 210 DVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFRE 249


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 47/207 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITY+T+I GYC   ++DEA +L   +  V +KP+ +
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y   
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 121 ----------------EEMCENNISP---------------------NI-------AGRP 136
                             +C+NN++                      NI        GR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA  L+ ++  NG++PD    S +A+
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAE 697



 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 79/124 (63%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  D I +N+II  +C   R+ E+ +LF+ +  + +KP+ IT++ L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+AT + + M+  G K + VTY+ LI+GY K   M+ A  ++ EM  + +
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 129 SPNI 132
           SP+I
Sbjct: 581 SPDI 584



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFT 66
           DA   +  ++T  G  P++ +YN ++ G C  NR  EA++L + +        P+ +++T
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+ F KEG +D A   + +ML++G   NVVTYS +I    K+Q M  A +V   M +N
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            + PN             +G+P EA+     M  +G+ PD +  ++L DY
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ P+  TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  MF  M ++G K  + TY  L+ GY     +     + +
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I PN              G+  +AM ++  M + G+ PD +   T+
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + PN   F+ILI 
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+G++D A ++FSKM ++G   + VTY  +I    KS  ++ A   +E+M +  +SP
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 131 -NIA----------------------------------------------GRPTEAMQLY 143
            NI                                               GR  E+ +L+
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ PD +  STL D
Sbjct: 503 DLMVRIGVKPDIITYSTLID 522



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  LD A   + ++ DRG+ P+++TY++II   C    +D+A+++   +    + PN
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++  +C  G+  +A     KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P I             G   E   L D M+RNGI P+  + S L
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL+L   + D G +  PD+++Y T+I G+     LD+A   + ++    + PN +T++ +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A CK   MD A  + + M++ G   N  TY+ ++ GY  S   K A    ++M  + +
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGV 300

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++             GR TEA +++DSM + G+ P+     TL
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL PD +TY T+I   C   R+++A++ FE++   +L P +I
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI + C   + D A  +  +ML++G   + + ++ +ID + K   +  +  +++ M
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P+I            AG+  EA +L  SM+  G+ PD +  +TL
Sbjct: 506 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A++ F Q+ D  L P  I YN++I   C  ++ D+A +L  ++    +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++I F  +ID+ CKEGR+ ++  +F  M+  G K +++TYS LIDGY  +  M  A  + 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
             M    + P+       I G     R  +A+ L+  M  +G+ PD
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T+ G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GR D+A  +F+ +   G   +V TYS + +   +   ++   D++  M EN  +
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCT 721

Query: 130 PN 131
            N
Sbjct: 722 AN 723



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 53/198 (26%)

Query: 10  AALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           AA+  + ++   G   + P++ TY  +I   C   RLD        +     + ++I FT
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 67  ILIDAFCKEGRMDDAT-MMFSKMLEKGPKAN----------------------------- 96
            L+   C + R  DA  ++  +M + G   N                             
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 97  --------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT----------- 137
                   VV+Y+ +I+G+FK  ++  A+  Y EM +  I PN+    +           
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250

Query: 138 -EAMQLYDSMLRNGIMPD 154
            +AM++  SM++NG+MP+
Sbjct: 251 DKAMEVLTSMVKNGVMPN 268



 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I     + R DEA  LF  L+   L P+  T++++
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  AN
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTAN 723


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 78/124 (62%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LDA   L+ +++D G++PD+ TY  +I G+C   R++ AV++F ++    + PN++ FT 
Sbjct: 236 LDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTT 295

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CKEG ++    ++  M  +G   ++V Y+ L++G  +++N+K+A  + EEM    
Sbjct: 296 LIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAG 355

Query: 128 ISPN 131
           + P+
Sbjct: 356 LKPD 359



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 91/168 (54%), Gaps = 13/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +A K+F ++  R ++P ++T+NT+I G C    LD    L+++++ V +KP+  T+  
Sbjct: 202 LVSARKVFDEMR-RSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGA 260

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC+ GRM++A  MF++M + G   N V ++ LID + K  N+ +  D+Y++M    
Sbjct: 261 LIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRG 320

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++            A     A  + + M   G+ PD +  +TL D
Sbjct: 321 VMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLID 368



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 4/155 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++A + L+  +  RG+ PD++ YN ++ G C    L  A  + E++    LKP+ +
Sbjct: 302 KEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKV 361

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CK+G++D A  +  KM EK    + VTY+ LI G  K+     A  V  EM
Sbjct: 362 TYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREM 421

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            E  + P+     T    + D+  R G +  G  L
Sbjct: 422 MEAALEPD----NTTYTMVIDAFCRKGDVKTGFKL 452



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +L AA  +  ++ + GL+PD +TY T+I G C   +LD A+ + +K+   ++  +
Sbjct: 335 LCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLD 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI    K GR  DA  +  +M+E   + +  TY+ +ID + +  ++K+ F + +
Sbjct: 395 EVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLK 454

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      P +             G+   A  L  +ML  G+ PD +  + L D
Sbjct: 455 EMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLD 508



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 53/99 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++  ++ +  LEPD  TY  +I  +C    +    +L +++     KP  +T+ ++++
Sbjct: 414 AERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMN 473

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
             CK G+M +A M+   ML  G   + +TY+ L+DG  K
Sbjct: 474 GLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCK 512



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +    KL  ++ ++G +P ++TYN I+ G C L ++  A  L   +  + + P+ IT+ I
Sbjct: 446 VKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNI 505

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           L+D  CK G++ ++  + S    KG   +   Y+ LI    K +  K+  D
Sbjct: 506 LLDGQCKHGKVANSEELES---SKGMVPDFAVYTSLISELAKKKPAKNYHD 553


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  + AA ++  ++ D G  P+++TYN+++ G C   R+ +A+ L   +TC    PN
Sbjct: 236 LCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 295

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK GR+ DA  M + M++KG   +++ Y+ LI+G  K+  +  +  +  
Sbjct: 296 VVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLR 355

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 I P++            + R  EA +L   +   G  PD +L STL D
Sbjct: 356 RAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLID 409



 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 7/138 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD AL +  ++ D G EP+++TYN++I G C  N  D A +LFE +  V+  P+
Sbjct: 89  LWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPS 148

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-------KANVVTYSCLIDGYFKSQNMK 114
            +T+  L+D   + G+++ A  +F +ML++           NV+TYS LIDG  K+  + 
Sbjct: 149 MVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVS 208

Query: 115 SAFDVYEEMCENNISPNI 132
            A ++ E M     SP++
Sbjct: 209 QAVELLESMKARGCSPDV 226



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 19/179 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRG-------LEPDIITYNTIICGYCSLNRLDEAVQLFEKLT 54
           L +   L+ A+ LF ++ DR          P++ITY+ +I G C  NR+ +AV+L E + 
Sbjct: 159 LFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMK 218

Query: 55  CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
                P+ IT+TIL+D  CKE ++  A  +  +ML+ G   N+VTY+ L+ G  +++ + 
Sbjct: 219 ARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVS 278

Query: 115 SAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            A  +  +M     +PN+             GR  +A  +   M+  G  PD ++ + L
Sbjct: 279 DALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNML 337



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 52/212 (24%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   LD A +L   +  RG  PD+I Y+T+I G C   ++DEA  L+E +       +
Sbjct: 376 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDAD 435

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK GR+D+A ++ ++M+  G   + +TY+ LI G     ++  A ++ E
Sbjct: 436 VVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVE 495

Query: 122 EMCENNISPNI------------------------------------------------- 132
           EM  +N +P+                                                  
Sbjct: 496 EMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDG 555

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              AGR  EA+  +  M+ NG++PD +  S L
Sbjct: 556 LCKAGRVAEALDYFQEMIDNGVIPDHITYSIL 587



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +   + D+G  PD++ YN +I G C  +++DE++ L  +     +KP+ +T++ +I 
Sbjct: 315 ACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIY 374

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+  R+D+A  +   +  +G   +V+ YS LIDG  K+  +  AFD+YE M  +    
Sbjct: 375 GLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDA 434

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            AGR  EA  L   M+R G  P  +  ++L
Sbjct: 435 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSL 477



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D ++ L  +    G++PD++TY+++I G C  NRLDEA +L   +      P+
Sbjct: 341 LCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD 400

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I ++ LID  CK G++D+A  ++  M   G  A+VVTYS LIDG  K+  +  A  +  
Sbjct: 401 VILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLA 460

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P+       I G        EA++L + M R+   P  +  + L
Sbjct: 461 RMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNIL 512



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+ F  +   G+  D + Y  ++ G     RLD+A+ +  ++     +PN +T+  LID
Sbjct: 63  ALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLID 122

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC------ 124
             CK    D A  +F  M       ++VTY+ L+DG F++  ++ A  +++EM       
Sbjct: 123 GLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD 182

Query: 125 -ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++  SPN+            A R ++A++L +SM   G  PD +  + L D
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVD 234



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 12/152 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +PD+ TY  ++ G+C    +D+A + F+++    L PN    +ILID  CK  R  DA  
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
            F  M   G  A+ V Y+ L+ G +K + +  A  +  EM ++   PN+           
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               P  A +L++ M      P  +  +TL D
Sbjct: 126 KNNEPDRAQELFEHMKSVECSPSMVTYNTLLD 157



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 5/112 (4%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE--KLTCVQLKP---N 61
           HLD A++L  ++      P  +TYN +I G C + R+D AV L E  K  CV       +
Sbjct: 486 HLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALD 545

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
           +I ++ LID  CK GR+ +A   F +M++ G   + +TYS L++G  KS+++
Sbjct: 546 TIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDL 597



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A + F ++  + L P++   + +I G C   R  +A++ F  +    +  +++ +T
Sbjct: 24  EIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYT 83

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+    KE R+D A  +  +M + G + NVVTY+ LIDG  K+     A +++E M   
Sbjct: 84  ALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSV 143

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
             SP++    T    L D + R G +   + L
Sbjct: 144 ECSPSMVTYNT----LLDGLFRTGKLERAMAL 171


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  LF Q+   GL PDI+TYN++I GY  L  LDE+  LFE++  V  +P+ I
Sbjct: 264 KEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVI 323

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK  +M  A     +M   G K NVVTYS LID   K   ++ A     +M
Sbjct: 324 TYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDM 383

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               +SPN             AG  ++A++L D ML+  +  + +  +TL D
Sbjct: 384 RRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLD 435



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 71/126 (56%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A     ++ + GL+P+++TY+T+I   C  + L +A++    +  V L PN  T+T
Sbjct: 337 QMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYT 396

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LIDA CK G + DA  +  +ML+     NVVTY+ L+DG  K   M  A D++  M + 
Sbjct: 397 SLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKA 456

Query: 127 NISPNI 132
            ++PN+
Sbjct: 457 GVTPNL 462



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 13/162 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++ Y TII G CS N+L+E   +  ++    ++ NS+ +TI +DA+ K G+  +A  +
Sbjct: 495 PDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNL 554

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
             +M + G +  +VT+  LIDG  K   ++ A D +  M + N+ PN     T       
Sbjct: 555 LQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLC 614

Query: 138 ------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                  A +L+D M    ++PD +  + L D NL+    QE
Sbjct: 615 KNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQE 656



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 68/115 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A+K    +   GL P+  TY ++I   C    L +A++L +++  VQ+  N
Sbjct: 367 LCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFN 426

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            +T+T L+D  CKEGRM +A  +F  M++ G   N+ TY+ L+ G+ K++ +++A
Sbjct: 427 VVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENA 481



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 12/173 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D + K F  +   G+   + TYN +I   C    +  A  LF ++  + L P+ +T+  L
Sbjct: 234 DLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSL 293

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID + K G +D++  +F +M + G + +V+TY+ LI+ + K + M  AF    EM  + +
Sbjct: 294 IDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGL 353

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            PN+    T            +A++    M R G+ P+    ++L D N ++ 
Sbjct: 354 KPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAG 406



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 88/167 (52%), Gaps = 5/167 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  LF  +   G+ P++ TY  ++ G+    R++ A++L +++   ++KP+
Sbjct: 437 LCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPD 496

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I   C + ++++   + S+M   G +AN V Y+  +D YFK+     A ++ +
Sbjct: 497 LLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQ 556

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
           EMC+  +   I         L D + + G++ + +   + +AD+NLQ
Sbjct: 557 EMCDLGVEVTI----VTFCVLIDGLCKKGLVEEAIDYFARMADFNLQ 599



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A + F ++T   + P   + N  +       + D + + F  +    +  +  T+ I
Sbjct: 198 LEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNI 257

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CKEG M  A  +F +M + G   ++VTY+ LIDGY K   +  +F ++EEM +  
Sbjct: 258 MIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVG 317

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++              +  +A      M  +G+ P+ +  STL D
Sbjct: 318 CEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLID 365



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNT-IICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K+  ++ A+  F ++ D  L+P+ +   T +I G C  N ++ A +LF+++    + P
Sbjct: 577 LCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVP 636

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + I +T LID   K     +A  + S+M E G + ++  Y+ L+ G  +   ++ A    
Sbjct: 637 DKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFL 696

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRN 149
            EM    I P+              G   EA++L+D +L+ 
Sbjct: 697 NEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLKK 737


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 21/187 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ A K+  ++  +GL P    ++ +I G+C    +D A+ ++E +   ++KPN
Sbjct: 311 LVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPN 370

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ +ID F + GRM +A  +F +M++     N+VTYS ++ GYF   N   A   +E
Sbjct: 371 VVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWE 430

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD---------GLLLST 160
           EM +    P               GR  +AM ++ +M+  G  PD         GL +S 
Sbjct: 431 EMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSG 490

Query: 161 LADYNLQ 167
           + D  L+
Sbjct: 491 MVDGGLR 497



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA+ +  ++ + G+ P ++TY  ++ G     R+++A ++ +++    L P+   F+ +I
Sbjct: 284 AAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVI 343

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FCK G +D A M++  M+    K NVV YS +IDG+ +S  M  A  ++EEM +    
Sbjct: 344 TGFCKSGEVDRALMVWETMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCI 403

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           PNI                + A+  ++ M++ G +P  +  S L
Sbjct: 404 PNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSIL 447



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A KLF ++ D    P+I+TY++++ GY  +     A+  +E++  V   P +I+++I
Sbjct: 387 MTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSI 446

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CEN 126
           LI   C  GR+ DA M++  M+ +G   + + Y+ ++ G   S  +     ++ +M  + 
Sbjct: 447 LISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRLFNDMLAKG 506

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLAD 163
           +  P++         L D+++R   +P  + LL+ + D
Sbjct: 507 DAKPDVISYNV----LLDALIRTNDLPRAMDLLNQMLD 540



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  + ++   G  P  I+Y+ +I G C + RL +A+ +++ +      P++I +T ++ 
Sbjct: 425 ALSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMK 484

Query: 71  AFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             C  G +D    +F+ ML KG  K +V++Y+ L+D   ++ ++  A D+  +M +    
Sbjct: 485 GLCMSGMVDGGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQMCD 544

Query: 130 PN 131
           P+
Sbjct: 545 PD 546



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +++   ++ A+KLF  +  +G     +TYN ++ G         A+ +  ++    + P 
Sbjct: 241 MLRAGDVNGAVKLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPG 300

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++D   K GR++DA  +  +M  +G   +   +S +I G+ KS  +  A  V+E
Sbjct: 301 LMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWE 360

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    + PN+            +GR TEA +L++ M+    +P+ +  S++
Sbjct: 361 TMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSM 412



 Score = 46.2 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSITFT 66
           L  A+ ++  +  RG  PD I Y +++ G C    +D  ++LF + L     KP+ I++ 
Sbjct: 457 LKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRLFNDMLAKGDAKPDVISYN 516

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           +L+DA  +   +  A  + ++ML++    + +T
Sbjct: 517 VLLDALIRTNDLPRAMDLLNQMLDQMCDPDTIT 549



 Score = 45.8 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L PD  TY+T++        ++EAV L  ++  V    ++  F  ++ A  + G ++ A 
Sbjct: 193 LVPDKFTYSTVVSALADAGCVEEAVALVHEMV-VDGVVSAEAFNPVLKAMLRAGDVNGAV 251

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +F  M  KG     VTY+ L+ G       ++A ++   M    I P +          
Sbjct: 252 KLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGL 311

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              GR  +A ++   M   G+ P   + S +
Sbjct: 312 VKCGRVEDAWKVAQEMGGQGLAPSEFVFSAV 342



 Score = 42.4 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +N ++        ++ AV+LF  +        ++T+ +L+      G    A  +  +M 
Sbjct: 234 FNPVLKAMLRAGDVNGAVKLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRME 293

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPT 137
            +G    ++TY  ++DG  K   ++ A+ V +EM    ++P+             +G   
Sbjct: 294 NEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVD 353

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            A+ ++++M+   + P+ +L S + D
Sbjct: 354 RALMVWETMVAARVKPNVVLYSAMID 379



 Score = 38.1 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 8   LDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +D  L+LF  +  +G  +PD+I+YN ++      N L  A+ L  ++      P++IT  
Sbjct: 492 VDGGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQMCDPDTITCN 551

Query: 67  ILIDAF 72
           I +  F
Sbjct: 552 IFLREF 557


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK+F ++ +RG+ PD+  Y  ++   C+  R+++A +L   +      P+ +T+T+ + 
Sbjct: 233 ALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLS 292

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+D+A   F  + + G    ++ YSCLIDG F++         Y EM   +ISP
Sbjct: 293 GLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISP 352

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I            AGR  +A  L D M   G +PD    +TL
Sbjct: 353 DITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTL 395



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL   + + G+ PD++TYNT+I G C    LD A++LF++L    + P+ IT+  LID
Sbjct: 526 AYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLID 585

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NI 128
              +  R +DATM+F  +L  G   ++  Y+ ++    + + +  A +++ +      N+
Sbjct: 586 GLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNL 645

Query: 129 SP 130
           SP
Sbjct: 646 SP 647



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 25/177 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC------ 55
           L K+  +D A+++F ++ + G  P ++TYN +I G      L+EA  LF K+        
Sbjct: 434 LCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSL 493

Query: 56  ---VQLKPNSI----TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
              + L  N +    +   L+D  C+ G++  A  +   ++E G   +VVTY+ LI+G  
Sbjct: 494 FLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLC 553

Query: 109 KSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           K++N+  A  +++E+    ISP+             A R  +A  L+ ++LR+G  P
Sbjct: 554 KAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFP 610



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  ++ A +L   + + G  PD +TY   + G C   R+DEA   FE L        
Sbjct: 259 LCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLG 318

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I ++ LID   + GR D+    +++ML K    ++  Y+ LI  + ++   K AF + +
Sbjct: 319 LIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLD 378

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM +    P+              G    A  L   ML+N ++ D
Sbjct: 379 EMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLD 423



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 27/177 (15%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++ D+G  PD   YNT++     +  +D A  L  ++    +  +S T  I+I 
Sbjct: 373 AFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMIC 432

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G +D A  +F +M E G    V+TY+ LIDG +++  ++ A  ++ +M   N +P
Sbjct: 433 GLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGN-NP 491

Query: 131 NI--------------------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++                          +G+  +A +L   ++ +G++PD +  +TL
Sbjct: 492 SLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTL 548



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 15/159 (9%)

Query: 11  ALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           A+ +F  L D    GL      +  ++  + S  R  EAV+ F ++     +P +  +  
Sbjct: 125 AVAMFDALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNA 184

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +       G +  A  ++++M+  G   N  TY  L+DG  K      A  +++EM E  
Sbjct: 185 VFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERG 244

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           I P++             GR  +A +L  SM  NG  PD
Sbjct: 245 IVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPD 283



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +    D  L  + ++  + + PDI  Y  +I  +    R  +A  L +++      P+
Sbjct: 329 LFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPD 388

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  L+ A    G +D A  + S+ML+     +  T++ +I G  K   +  A  V++
Sbjct: 389 TFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFD 448

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           EM E+   P +         L D + R G++ +  +L
Sbjct: 449 EMGEHGCHPTV----MTYNALIDGLYRAGMLEEARML 481



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD AL+LF +L  +G+ PD ITY T+I G    +R ++A  LF+ +      P+
Sbjct: 552 LCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPS 611

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK----GPKANVVTYS--CLIDGYF 108
              +  ++ + C+  ++  A  ++   L K     P+  V+  +  C  DG+ 
Sbjct: 612 LPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPEDEVIANARKCFEDGFL 664


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 22/179 (12%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++AA ++   +   G+ PD   YN+++ GY  L R+D+A  +++++    +KPN++TF 
Sbjct: 368 NVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFN 427

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +L+    K+G+ D A  +F +MLEK      +V+Y+ LIDG  K+  +  AF  ++EM +
Sbjct: 428 VLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMID 487

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD---------GLLLSTLAD 163
             I P              AGR  EA +L + M++ G+ PD         GL+ S++ D
Sbjct: 488 RGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVD 546



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++  LK F +++     P   TY  +I G C    L +A ++FE++      P+
Sbjct: 153 LLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 212

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T LID F K  +MD+A  +   ML KGP+   VTY  ++ G+ K   +  A +V  
Sbjct: 213 TITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIA 272

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M E    P +             GR  EA Q+   M   G  PD +L ++L D
Sbjct: 273 QMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLID 326



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 6   CHLD---AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C LD    A ++  Q+ +RG EP +  + +++  Y S  R +EA Q+  ++T     P+ 
Sbjct: 259 CKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDV 318

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I +T LID     GR+ +A  +F  M+EKG   + +TY  +I  + K  N+++A ++ E 
Sbjct: 319 ILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILEL 378

Query: 123 MCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M ++ + P+               R  +A  +YD M+ +GI P+ +  + L
Sbjct: 379 MAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVL 429



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +LF +L   G  P+++ Y  +I G     R+++ ++ FE+++     P   T+T
Sbjct: 123 RIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYT 182

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++ID  CK   + DA  +F +M++KG   + +TY+ LIDG+ K+  M  A  + + M   
Sbjct: 183 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 242

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
              P      +            EA ++   M   G  P   + ++L  Y L    ++E
Sbjct: 243 GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEE 301



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 12/148 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D+I+Y T+I G     R+DEA +LFE+L      PN + +T +ID   K GR++D    F
Sbjct: 107 DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 166

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
            +M          TY+ +IDG  K+Q +  A  V+E+M +    P+             A
Sbjct: 167 EEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 226

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  EA +L D ML  G  P  +   ++
Sbjct: 227 SKMDEARKLLDVMLTKGPEPTAVTYGSI 254



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K F  + D G EPD+I + T+I G+C   +     +L  +    + +P+   +T 
Sbjct: 23  MDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQ-ALKRFRPDVFLYTS 81

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +I  +CK G +D  T  F  +    PKA  +V++Y+ +I G   S+ +  A +++EE+  
Sbjct: 82  VIHGYCKAGDLD--TGYFRAVT---PKASLDVISYTTVIKGLADSKRIDEACELFEELKT 136

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
              SPN+         + D +L+ G + DGL
Sbjct: 137 AGCSPNVVAYTA----VIDGLLKAGRIEDGL 163



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 76/146 (52%), Gaps = 1/146 (0%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPN 61
           +K   +D A  ++ ++   G++P+ +T+N ++ G     + D A  LF E L   ++ P 
Sbjct: 399 VKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPT 458

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++TILID   K GR+ +A + F +M+++G      TY+ LI    K+  +  A  + E
Sbjct: 459 LVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE 518

Query: 122 EMCENNISPNIAGRPTEAMQLYDSML 147
           +M +  ++P++         L DS +
Sbjct: 519 DMVKLGVNPDVQAYSALITGLIDSSM 544



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K+   D A  LF ++ ++  + P +++Y  +I G     R+ EA   F+++    + P
Sbjct: 433 LFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIP 492

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              T+T LI +  K GR+ +A  +   M++ G   +V  YS LI G   S  + +A+DV+
Sbjct: 493 ECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVF 552

Query: 121 EEMCENNISPN 131
           +EM +   +PN
Sbjct: 553 QEMMKRGCAPN 563



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A   F ++ DRG+ P+  TY ++I       R+ EA +L E +  + + P+
Sbjct: 469 LGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 528

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
              ++ LI        +D A  +F +M+++G   N VTY  L  G+
Sbjct: 529 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 574



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 37/79 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A KL   +   G+ PD+  Y+ +I G    + +D A  +F+++      PN
Sbjct: 504 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPN 563

Query: 62  SITFTILIDAFCKEGRMDD 80
            +T+ +L   F   GR  D
Sbjct: 564 EVTYKVLRRGFRAAGRALD 582


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 81/131 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A   F Q+   G++PD+++Y  +I GYC   ++DE+++L  ++  + L+P+
Sbjct: 410 LCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPD 469

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T++ L++ +CK GR+DDA  ++ +M  K  K N +TY+ ++ G F +  + +A + Y 
Sbjct: 470 NVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYM 529

Query: 122 EMCENNISPNI 132
           ++ ++ I   I
Sbjct: 530 KIVDSGIQLGI 540



 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 12/151 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL  ++ +RG+ P+ I  NTI+   C   R+ EA   F+++  V +KP+ +++TILID +
Sbjct: 386 KLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGY 445

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C +G+MD++  +  +M+  G + + VTYS L++GY K+  +  A  +Y EM   ++ PN 
Sbjct: 446 CLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNA 505

Query: 133 ------------AGRPTEAMQLYDSMLRNGI 151
                       AGR   A + Y  ++ +GI
Sbjct: 506 ITYNIILHGLFHAGRVVAAREFYMKIVDSGI 536



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 63/223 (28%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL----------------NRLDE 45
           L KE  +D A  LF ++  +G  P+I+TYN++I G C                   +L+E
Sbjct: 149 LFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEE 208

Query: 46  AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           AV+L +K++   L+P+ +T+++LID +CK GR  +A  +F  M+ +G   +  TY  L+ 
Sbjct: 209 AVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLH 268

Query: 106 G-----------------------------------YFKSQNMKSAFDVYEEMCENNISP 130
           G                                   Y K++ +  A   + EM +   SP
Sbjct: 269 GYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSP 328

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+            AGR  +A+  +  M+  G+ PD +  ++L
Sbjct: 329 NVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSL 371



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A+  F Q+   GL PDIIT+ ++I G C++    +  +L  ++    + P
Sbjct: 339 ILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHP 398

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+I    ++D+ CKEGR+ +A   F +++  G K +VV+Y+ LIDGY     M  +  + 
Sbjct: 399 NAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLL 458

Query: 121 EEMCENNISP-NIA-----------GRPTEAMQLYDSMLRNGIMPDGL 156
             M    + P N+            GR  +A+ LY  M    + P+ +
Sbjct: 459 GRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAI 506



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ++KL G++   GL PD +TY+ ++ GYC   R+D+A+ L+ ++    +KPN+IT+ I
Sbjct: 451 MDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNI 510

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++      GR+  A   + K+++ G +  + TY+ ++ G  ++  +  A  +++ +    
Sbjct: 511 ILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKE 570

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               +             GR  +A  L+ ++L +G++PD ++   +   +++
Sbjct: 571 FQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIE 622



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            +N +I  Y     LD+A+  F ++      PN +T+T +ID  CK GR++DA   FS+M
Sbjct: 297 VFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQM 356

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           + +G   +++T++ LI G       K    +  EM    I PN              GR 
Sbjct: 357 VSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRV 416

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA   +D ++  G+ PD +  + L D
Sbjct: 417 LEAHDFFDQIIHVGVKPDVVSYTILID 443



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 20/167 (11%)

Query: 11  ALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-------- 59
           A+ LF  +   G   L  D  T+  +I  +C++  LD A++   + +   +         
Sbjct: 75  AVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYN 134

Query: 60  --PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             PN +++ ++I+   KEG +D A  +F +ML +G   N+VTY+ +IDG  K+Q M  A 
Sbjct: 135 CPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAE 194

Query: 118 DVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            V ++M +        G+  EA++L   M   G+ PD +  S L DY
Sbjct: 195 AVLQQMFDK-------GQLEEAVRLLKKMSGGGLQPDVVTYSLLIDY 234



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 66/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA + + ++ D G++  I TYN ++ G C  + +DEA+++F+ L   + +    TF I+I
Sbjct: 523 AAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMI 582

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
               K GR+ DA  +FS +L  G   + + Y  +I  + +   ++ + +++  M +N  +
Sbjct: 583 VGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCT 642

Query: 130 PN 131
            N
Sbjct: 643 AN 644


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 48/214 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITY+T+I GYC   ++DEA +L   +  V +KP+ +
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y   
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 121 ----------------EEMCENNISP---------------------NI-------AGRP 136
                             +C+NN++                      NI        GR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            EA  L+ ++  NG++PD    S +A+ NL   G
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAE-NLIEQG 703



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 79/124 (63%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  D I +N+II  +C   R+ E+ +LF+ +  + +KP+ IT++ L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+AT + + M+  G K + VTY+ LI+GY K   M+ A  ++ EM  + +
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 129 SPNI 132
           SP+I
Sbjct: 581 SPDI 584



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFT 66
           DA   +  ++T  G  P++ +YN ++ G C  NR  EA++L + +        P+ +++T
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+ F KEG +D A   + +ML++G   NVVTYS +I    K+Q M  A +V   M +N
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            + PN             +G+P EA+     M  +G+ PD +  ++L DY
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + PN   F+ILI 
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+G++D A ++FSKM ++G   + VTY  +I    KS  ++ A   +E+M +  +SP
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 131 -NIA----------------------------------------------GRPTEAMQLY 143
            NI                                               GR  E+ +L+
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ PD +  STL D
Sbjct: 503 DLMVRIGVKPDIITYSTLID 522



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ P+  TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  MF  M ++G K  + TY  L+ GY     +     + +
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I PN              G+  +AM ++  M + G+ PD +   T+
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  LD A   + ++ DRG+ P+++TY++II   C    +D+A+++   +    + PN
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++  +C  G+  +A     KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P I             G   E   L D M+RNGI P+  + S L
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL+L   + D G +  PD+++Y T+I G+     LD+A   + ++    + PN +T++ +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A CK   MD A  + + M++ G   N  TY+ ++ GY  S   K A    ++M  + +
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGV 300

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++             GR TEA +++DSM + G+ P+     TL
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL PD +TY T+I   C   R+++A++ FE++   +L P +I
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI + C   + D A  +  +ML++G   + + ++ +ID + K   +  +  +++ M
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P+I            AG+  EA +L  SM+  G+ PD +  +TL
Sbjct: 506 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A++ F Q+ D  L P  I YN++I   C  ++ D+A +L  ++    +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++I F  +ID+ CKEGR+ ++  +F  M+  G K +++TYS LIDGY  +  M  A  + 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
             M    + P+       I G     R  +A+ L+  M  +G+ PD
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T+ G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GR D+A  +F+ +   G   +V TYS + +   +   ++   D++  M EN  +
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCT 721

Query: 130 PN 131
            N
Sbjct: 722 AN 723



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 53/198 (26%)

Query: 10  AALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           AA+  + ++   G   + P++ TY  +I   C   RLD        +     + ++I FT
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 67  ILIDAFCKEGRMDDAT-MMFSKMLEKGPKAN----------------------------- 96
            L+   C + R  DA  ++  +M + G   N                             
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 97  --------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT----------- 137
                   VV+Y+ +I+G+FK  ++  A+  Y EM +  I PN+    +           
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250

Query: 138 -EAMQLYDSMLRNGIMPD 154
            +AM++  SM++NG+MP+
Sbjct: 251 DKAMEVLTSMVKNGVMPN 268



 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I     + R DEA  LF  L+   L P+  T++++
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  AN
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTAN 723


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A KLF ++ +RG  PD  T+ T+I G+C    + +A+ LF  +T   +KP+
Sbjct: 186 LCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD 245

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LID FCK G M+ A+ ++  M+ +    N +TY  LI+ Y    ++  AF +++
Sbjct: 246 IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWD 305

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M E  I P +            +G  ++A +    M+  G+ PD +  +TL
Sbjct: 306 VMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 357



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK+  ++ ++G   D+I YNTI+ G C    L +A +LF+++      P+  TFT LI 
Sbjct: 160 ALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIH 219

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C++G M  A  +F  M ++  K ++V Y+ LIDG+ K   M+ A ++++ M    I P
Sbjct: 220 GHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFP 279

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMP 153
           N              G  +EA +L+D M+  GI P
Sbjct: 280 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKP 314



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 97/178 (54%), Gaps = 15/178 (8%)

Query: 1   MLIKECHLD---AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +L++ C  D    A ++FG++  +G+ PD++++++++  +     LD+A+  F  +    
Sbjct: 77  LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFG 136

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P+++ +T+L+  +C+ G M +A  +  +MLE+G   +V+ Y+ +++G  K + +  A 
Sbjct: 137 LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDAD 196

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +++EM E    P+              G  T+A+ L+ +M +  I PD +  +TL D
Sbjct: 197 KLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLID 254



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  L+ A ++   + D+GL+P + TYN II G C   R   A  +  ++  + L P++ 
Sbjct: 13  REGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTT 72

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+   C+     +A  +F +ML +G   ++V++S L+  + +++++  A   + +M
Sbjct: 73  TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDM 132

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  + P+              G   EA+++ D ML  G + D +  +T+
Sbjct: 133 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTI 182



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 12/147 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           ++TYNT+I  YC    L+EA ++   +    LKP+  T+  +I+  CK+GR   A  +  
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT--------- 137
           +ML  G   +  TY+ L+    +  N   A +++ EM    + P++    +         
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 138 ---EAMQLYDSMLRNGIMPDGLLLSTL 161
              +A+  +  M + G++PD ++ + L
Sbjct: 121 HLDQALVYFRDMKKFGLVPDNVIYTVL 147



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 1/108 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L+  +  R + P+ ITY  +I  YCS+  + EA +L++ +    +KP  +
Sbjct: 258 KVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLV 317

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI-DGYFKS 110
           T   +I  +C+ G    A     +M+ KG   + ++Y+ LI DG  +S
Sbjct: 318 TCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINDGKRRS 365


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PDI TYNT+I G C    L  A +L  ++     +PN IT+TILID FCKEGR+++A
Sbjct: 384 GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 443

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  +M  KG   N V Y+CLI    K + ++ A +++ +M      P+I         
Sbjct: 444 RNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 503

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                +  EA+ LY  ML  G++ + +  +TL    L+    QE
Sbjct: 504 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQE 547



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  AL +FG ++ +G +PDI T+N++I G C +N+ +EA+ L++ +    +  N
Sbjct: 469 LCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIAN 528

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI AF + G M +A  + + ML +G   + +TY+ LI    ++ N++    ++E
Sbjct: 529 TITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFE 588

Query: 122 EMCE-----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M       NNIS NI        G    A++    M+  G+ PD +  ++L +   ++ 
Sbjct: 589 DMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTG 648

Query: 170 GSQE 173
            +QE
Sbjct: 649 RAQE 652



 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  ++  AL+    +  RGL PDI+TYN++I G C   R  EA+ LF+KL    + P+
Sbjct: 609 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 668

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           +IT+  LI   CKEG  DDA ++ S+ ++ G   N VT+  L+  + K
Sbjct: 669 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 716



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +L +A +L  ++  +G EP++ITY  +I  +C   RL+EA  + ++++   L  N
Sbjct: 399 LCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALN 458

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  LI A CK+ ++ DA  MF  M  KG K ++ T++ LI G  K    + A  +Y+
Sbjct: 459 AVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQ 518

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           +M    +  N     T    L  + LR G M + L L
Sbjct: 519 DMLLEGVIANTITYNT----LIHAFLRRGAMQEALKL 551



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++   +  ALKL   +  RG   D ITYN +I   C    +++ + LFE +    L PN
Sbjct: 539 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 598

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I+  ILI+  C+ G +  A      M+ +G   ++VTY+ LI+G  K+           
Sbjct: 599 NISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKT----------- 647

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
                       GR  EA+ L+D +   GI PD +  +TL  ++
Sbjct: 648 ------------GRAQEALNLFDKLQVEGICPDAITYNTLISWH 679



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEA-VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           P+++ +NT+I GY S  RLDEA   + E +  V   P+  T+  LI   CK+G +  A  
Sbjct: 351 PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARE 410

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG--------- 134
           + ++M  KG + NV+TY+ LID + K   ++ A +V +EM    ++ N  G         
Sbjct: 411 LMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALC 470

Query: 135 ---RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              +  +A+ ++  M   G  PD    ++L
Sbjct: 471 KDEKVQDALNMFGDMSSKGCKPDIFTFNSL 500



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  +  +++ +GL  + + YN +I   C   ++ +A+ +F  ++    KP+  
Sbjct: 436 KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 495

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI   CK  + ++A  ++  ML +G  AN +TY+ LI  + +   M+ A  +  +M
Sbjct: 496 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 555

Query: 124 ----CE-NNISPN-------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               C  ++I+ N        AG   + + L++ M+  G+ P+ +  + L +  L  +G+
Sbjct: 556 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN-GLCRTGN 614

Query: 172 QEHCI 176
            +H +
Sbjct: 615 IQHAL 619



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 17/155 (10%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PD+ T+N  I G C + R+ EA +L +++      PNS T+ +L+   C+ G++D+A
Sbjct: 282 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 341

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-YEEMCENNISPNI-------- 132
            M+ +K+    P  NVV ++ LI+GY     +  A  V +E M      P+I        
Sbjct: 342 RMLLNKV----PNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 397

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                G    A +L + M   G  P+ +  + L D
Sbjct: 398 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILID 432



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++  L LF  +  +GL P+ I+ N +I G C    +  A++    +    L P+
Sbjct: 574 LCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 633

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK GR  +A  +F K+  +G   + +TY+ LI  + K      A  +  
Sbjct: 634 IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 693

Query: 122 EMCENNISPN 131
              ++   PN
Sbjct: 694 RGVDSGFIPN 703



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 58/118 (49%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++  +G+ P + T+  ++   C +N +D A  L + +T     PN+I +  LI A  
Sbjct: 204 VFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALX 263

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           K GR+++   +  +ML  G   +V T++  I G  K   +  A  + + M     +PN
Sbjct: 264 KVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPN 321



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 38/75 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL LF +L   G+ PD ITYNT+I  +C     D+A  L  +       PN
Sbjct: 644 LCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 703

Query: 62  SITFTILIDAFCKEG 76
            +T+ IL+  F KEG
Sbjct: 704 EVTWYILVSNFIKEG 718



 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 54/150 (36%), Gaps = 12/150 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           EP   +YN ++    + N       +F ++    + P   TF +++ A C    +D A  
Sbjct: 179 EPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACA 238

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG--------- 134
           +   M   G   N + Y  LI    K   +     + EEM      P++           
Sbjct: 239 LLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLC 298

Query: 135 ---RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              R  EA +L D ML  G  P+      L
Sbjct: 299 KMLRIHEAAKLVDRMLLRGFTPNSFTYGVL 328


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G+ PD+ TYN +I  +  +  +D+A +LFE++     KP+ IT+  +I+   
Sbjct: 204 LYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLG 263

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K G +D+A M+F  M EKG   +V TYS LI+ + KS  +  A  +++EM      PNI 
Sbjct: 264 KNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIV 323

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  EA +LY+++ + G+ PD +  S L
Sbjct: 324 TYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSIL 363



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 71/124 (57%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +LF ++ D   +PD+ITYN++I        LDEA  LF+ +      P+  T++I
Sbjct: 233 VDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSI 292

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ F K  ++D A  +F +M+ +G   N+VTY+ L+D   +    + A  +YE + +  
Sbjct: 293 LIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQQG 352

Query: 128 ISPN 131
           ++P+
Sbjct: 353 LAPD 356



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   + ++G+  D+  YN I      L ++     L++K+    + P+  T+ I+I 
Sbjct: 166 AIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMIS 225

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +F + G +D A+ +F +M +   K +V+TY+ +I+   K+ ++  A  ++++M E    P
Sbjct: 226 SFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDP 285

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++            + +   A  L+D M+  G +P+ +  + L D
Sbjct: 286 DVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLD 330



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 57/102 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF  + ++G +PD+ TY+ +I  +   N++D A  LF+++      PN
Sbjct: 262 LGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPN 321

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + G+  +A  ++  + ++G   + +TYS L
Sbjct: 322 IVTYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSIL 363



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 48/204 (23%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID------ 70
           ++  +G   ++I YNT+I        +D+A+ +  K+     +PN  T++I++D      
Sbjct: 35  EMVSKGCVLNLIAYNTVIEALGKNKMVDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGG 94

Query: 71  --------------------------AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
                                     A CK G   +A  +F +M     K +   +  ++
Sbjct: 95  QLHRLNEILDICSGHLNRSVYSYLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSML 154

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNIA---------GRPTEA---MQLYDSMLRNGIM 152
           +    ++    A D+   M E  I+ ++          G+  +      LYD M  NG+ 
Sbjct: 155 EALCNAEKTAEAIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVA 214

Query: 153 PD----GLLLSTLADYNLQSSGSQ 172
           PD     +++S+     L    S+
Sbjct: 215 PDVFTYNIMISSFGRVGLVDKASE 238



 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A  +F ++     + D   + +++   C+  +  EA+ L   +    +  +
Sbjct: 122 LCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGITTD 181

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + I+  A  K  ++   + ++ KM   G   +V TY+ +I  + +   +  A +++E
Sbjct: 182 VGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFE 241

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +++  P++             G   EA  L+  M   G  PD    S L
Sbjct: 242 EMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSIL 293



 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +PD  TY  +I       +  + V   E++       N I +  +I+A  K   +D A  
Sbjct: 7   DPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIF 66

Query: 84  MFSKMLEKGPKANVVTYSCLID 105
           M SKM+E   + N  TYS ++D
Sbjct: 67  MLSKMIESDCQPNQFTYSIMLD 88



 Score = 39.3 bits (90), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            Y+ ++   C      EA  +F ++     K +   F  +++A C   +  +A  +   M
Sbjct: 114 VYSYLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMM 173

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
            EKG   +V  Y+ +     K + +     +Y++M  N ++P++             G  
Sbjct: 174 PEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLV 233

Query: 137 TEAMQLYDSMLRNGIMPD 154
            +A +L++ M  +   PD
Sbjct: 234 DKASELFEEMDDSSCKPD 251



 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%)

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P++ T+TILI    K G+         +M+ KG   N++ Y+ +I+   K++ +  A  +
Sbjct: 8   PDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIFM 67

Query: 120 YEEMCENNISPN 131
             +M E++  PN
Sbjct: 68  LSKMIESDCQPN 79


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P++ TYN  I G C    +DEA+++ + +    L P+  T+T+L+D FCK+ R  +A +
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F  M   G   N  TY+ LIDG+ K  N++ A  + +EM    +  N+           
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            AG   +AM L++ ML  GI PD    + L D  L+S    + C
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKAC 436



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 47/209 (22%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++   + ++GL PD  TY  ++ G+C   R  EA  +FE +    L PN  T+T 
Sbjct: 292 VDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTA 351

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC------------------------- 102
           LID F KEG +++A  +  +M+ +G K NVVTY+                          
Sbjct: 352 LIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 103 ----------LIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG-----RPTEAM 140
                     LIDGY KS +M  A ++  EM    ++P+       I+G        +A 
Sbjct: 412 IEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471

Query: 141 QLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           ++ D M+RNG+ P+  +  TL    +Q S
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQES 500



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A + F  +   G+ P+ + Y  +I G+C +    EA+  F+ +    L P+  
Sbjct: 568 KSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIR 627

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ +I +  K G+  +A  +F K L+ G   +V  Y+ LI G+ K  +++ A  +Y+EM
Sbjct: 628 AYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM 687

Query: 124 CENNISPNI--------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N I+PNI              +G  TEA +L+D M+  GI PDG +   L D
Sbjct: 688 LHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILID 741



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE +++ AL++  ++  RGL+ +++TYN +I G      + +A+ LF ++    ++P+
Sbjct: 356 FIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPD 415

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ +LID + K   M  A  + ++M  +    +  TYS LI G   S +++ A +V +
Sbjct: 416 TWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLD 475

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +M  N + PN+              R   A++L   M+ NG++PD
Sbjct: 476 QMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E   + A++L   +   G+ PD+  YN +I G C   +++EA  L   +    +KPN+
Sbjct: 497 VQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+   I+ + K G +  A   F  ML  G   N V Y+ LI G+    N   A   ++ 
Sbjct: 557 HTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKC 616

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M E  + P+I             G+  EAM ++   L+ G++PD  L ++L
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSL 667



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 48/207 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTII--CGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           KE  ++ A +L+ ++   G+ P+I+ YNT+I   GYC    L EA +LF+++    + P+
Sbjct: 673 KEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPD 732

Query: 62  SITFTI----------------------------------LIDAFCKEGRMDDATMMFSK 87
              + I                                  LID+FCK G++ +A  +F  
Sbjct: 733 GYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDD 792

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M++K    N+VTY+ LID Y K++ M+ A  ++ +M   NI PN              G 
Sbjct: 793 MVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGN 852

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             + + L+  M   GI  D +    +A
Sbjct: 853 RFKMISLFKDMEARGIACDAIAYGVMA 879



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K   +  A+ LF ++   G+EPD  TYN +I GY   + + +A +L  ++   +L P+
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPS 450

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI   C    +  A  +  +M+  G K NV  Y  LI  Y +    + A ++ +
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDG 155
            M  N + P++            A +  EA  L   M   GI P+ 
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A ++  Q+   G++P++  Y T+I  Y   +R + A++L + +    + P+ 
Sbjct: 462 CHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDL 521

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  LI   C+  ++++A M+   M EKG K N  TY   I+ Y KS  ++ A   +++
Sbjct: 522 FCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKD 581

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           M  + I PN              G   EA+  +  ML  G++PD
Sbjct: 582 MLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 47/196 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT---- 66
           A +LF  + D+ L P+I+TY  +I  Y     ++EA QLF  +    + PN++T+T    
Sbjct: 786 ARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLL 845

Query: 67  -------------------------------ILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                                          ++  A+CKEG+  +A  + +K L +G K 
Sbjct: 846 SYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKL 905

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
               +  LI    K + + +  ++  EM +  +S +             +G   EA ++ 
Sbjct: 906 EDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVL 965

Query: 144 DSMLRNGIMPDGLLLS 159
             M R G +P  L L+
Sbjct: 966 GVMQRLGWVPTSLSLT 981



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  +F      G  P +I  N ++      N +    +++  +   ++ P+  T+T 
Sbjct: 188 LNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTN 247

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I A CK G +    M+ S+M EK  K N+ TY+  I G  ++  +  A +V + M E  
Sbjct: 248 VIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKG 306

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           + P+       + G     R  EA  +++SM  +G+ P+    + L D  ++    +E
Sbjct: 307 LGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEE 364


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE  +D A     ++ + G  PD +T+NT+I GYC   RL EA ++ ++++   LK NS
Sbjct: 398 VKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNS 457

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T   ++   C E ++DDA  + S   ++G   + V+Y  LI GYFK      A  +++E
Sbjct: 458 VTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDE 517

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M E  I P+I            +G+  +++   + +L +G++PD    +T+
Sbjct: 518 MKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTI 568



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH    D ++    +L + GL PD  TYNTII GYC   ++++A Q   K+     KP+ 
Sbjct: 538 CHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDL 597

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  IL+   C EG +D A  +F+  + KG   + VTY+ +I G  K    + AFD+  E
Sbjct: 598 FTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAE 657

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           M E  + P+             AGR  EA +    ++  G + D
Sbjct: 658 MEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQD 701



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A +L  ++ +  L PD++TYNT+I G    +   +  +L +K+    +KPN
Sbjct: 327 LCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPN 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+ +++  + KEG+MD+A     KM E G   + VT++ LI+GY K+  +  AF + +
Sbjct: 387 AVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMD 446

Query: 122 EMCENNISPN 131
           EM    +  N
Sbjct: 447 EMSRKGLKMN 456



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 47/208 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+  L+ A  L   + + GL P+  T+N ++ GYC L  L EA Q+ + +    + P
Sbjct: 256 VLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLP 315

Query: 61  NSITFTILIDAFCKEGRMDDATM-----------------------------------MF 85
           +  T+ +LI   CK+G++D+A                                     + 
Sbjct: 316 DVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELI 375

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
            KM  KG K N VTY+ ++  Y K   M +A +   +M E+  SP+             A
Sbjct: 376 DKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKA 435

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           GR +EA ++ D M R G+  + + L+T+
Sbjct: 436 GRLSEAFRMMDEMSRKGLKMNSVTLNTI 463



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +   G++ +  T+N +I G C  N+L EA+ L  K+      P+++++  ++D  C
Sbjct: 199 IFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLC 258

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K+G++++A  +   M   G   N  T++ L+ GY K   +K A  V + M +NN+ P++ 
Sbjct: 259 KKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVW 318

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  EA +L D M    ++PD +  +TL
Sbjct: 319 TYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTL 358



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  LD A KL    + RG   D ++Y T+I GY    +  EA++L++++   ++ P+ IT
Sbjct: 470 ERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIIT 529

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +I   C  G+ D +    +++LE G   +  TY+ +I GY +   ++ AF  + +M 
Sbjct: 530 YNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMV 589

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + +  P++             G   +A++L+++ +  G   D +  +T+
Sbjct: 590 KKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTI 638



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  L  A+ L G++ D    PD ++YNTI+   C   +L+EA  L   +    L PN  T
Sbjct: 225 ENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNT 284

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F IL+  +CK G + +A  +   M +     +V TY+ LI G  K   +  AF + +EM 
Sbjct: 285 FNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEME 344

Query: 125 ENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADY 164
              + P++    T            +  +L D M   G+ P+ +  + +  +
Sbjct: 345 NLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKW 396



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  LD ALKLF     +G   D +TYNTII G C  +R +EA  L  ++   +L P+
Sbjct: 607 LCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPD 666

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+  ++ A    GRM +A    S+++E+G
Sbjct: 667 CYTYNAILSALADAGRMKEAEEFMSRIVEQG 697



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 61/122 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A +   ++  +  +PD+ T N ++ G C+   LD+A++LF          +++
Sbjct: 574 REGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAV 633

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I   CKE R ++A  + ++M EK    +  TY+ ++     +  MK A +    +
Sbjct: 634 TYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRI 693

Query: 124 CE 125
            E
Sbjct: 694 VE 695



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 23/133 (17%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------- 54
           L KE   + A  L  ++ ++ L PD  TYN I+       R+ EA +   ++        
Sbjct: 642 LCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQD 701

Query: 55  ----------------CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
                             +  PNS+TF+  I+  C +G+  DA  M  +  +KG   +  
Sbjct: 702 QTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKS 761

Query: 99  TYSCLIDGYFKSQ 111
           TY  L++G  K +
Sbjct: 762 TYISLMEGLIKRR 774



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM---M 84
           +  +T I  Y + NR   A Q+F ++  + LKPN +T   LI+A  +        +   +
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAI 199

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI------- 132
           FS +++ G K N  T++ LI G      +  A  +  +M +     +N+S N        
Sbjct: 200 FSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCK 259

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
            G+  EA  L   M  NG++P+
Sbjct: 260 KGKLNEARDLLLDMKNNGLLPN 281


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 79/130 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L  +++ +G  P+++TYNT+I G C  ++ ++A +L E L      P+
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+TI++D  CKEGR+D A  M   ML++G   +V+TY+ L++G  ++  +  A  +++
Sbjct: 436 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 495

Query: 122 EMCENNISPN 131
           EM   + + +
Sbjct: 496 EMVSKDCTAD 505



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  L   + +R   P   TYNT+I G C    +D A  L ++       P+
Sbjct: 306 LCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPD 365

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++IL D  CK GR+D+A  +  +M  KG   N+VTY+ LIDG  K+   + A+++ E
Sbjct: 366 VVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLE 425

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +   P++             GR  +A+++ + ML+ G  P  +  + L
Sbjct: 426 SLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTAL 477



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL+   ++ +R + PD+ TYN +I G C  ++ D+A ++  ++    + P+++TF  +
Sbjct: 243 DGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSI 302

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +D  CK G+ + A  + + M E+  + +  TY+ LI G  K QN+  A D+ +E   +  
Sbjct: 303 MDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGF 362

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            P++             GR  EA +L   M   G  P+ +  +TL D   ++S +++
Sbjct: 363 VPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEK 419



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A ++  ++ DRG+ PD +T+N+I+ G C   + + A  L   +     +P+
Sbjct: 271 LCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPS 330

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   CK+  +D A  +  + +  G   +VVTYS L DG  K   +  AF++ +
Sbjct: 331 CCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVK 390

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM     +PN+            A +  +A +L +S++ +G +PD +  + + D
Sbjct: 391 EMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVD 444



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I  YN ++ GYC   RLDE   +FE + C    PN  T+ I++D  CK G++D+A   
Sbjct: 536 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 595

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG---------- 134
              M   G   +VV+Y+ +IDG FK+   K A  V ++M +  I P+             
Sbjct: 596 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 655

Query: 135 --RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             R  +A+ +  +M++ G+ PD +  +TL
Sbjct: 656 EERFDDAVGILKNMIKAGVDPDNVTYNTL 684



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 16/162 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++ D G  PD  TY+ +I   C +N++D+A  + +K      KP    +TIL  AFC
Sbjct: 147 MFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC 206

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K GR+ DA  +F  +    P  + + Y+ +I G+ +  +   A +  +EM E  ++P++ 
Sbjct: 207 KTGRLKDALEIFRNI----PSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVF 262

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      A +  +A ++   M+  G+ PD +  +++ D
Sbjct: 263 TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMD 304



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  AL++F  +      PD I YN II G+C  N  D A++  +++   ++ P+  
Sbjct: 207 KTGRLKDALEIFRNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVF 262

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILID  CK  + D A+ M  +M+++G   + VT++ ++DG  K+   + A  +   M
Sbjct: 263 TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM 322

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E N  P+       I+G         A  L D  + +G +PD +  S LAD
Sbjct: 323 AERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILAD 374



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 21/185 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A +L   L   G  PD++TY  I+ G C   RLD+A+++ E +      P+
Sbjct: 411 LCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 470

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
            IT+T L++  C+ GR+D+A  +F +M+ K   A+ + Y  L++GY KS   K A     
Sbjct: 471 VITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD 530

Query: 117 -------FDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
                   DVY  + +        GR  E   +++ M   G +P+      +  YN+   
Sbjct: 531 GIRGTPYIDVYNALMDGYCK---EGRLDEIPNVFEDMACRGCVPN------IKTYNIVMD 581

Query: 170 GSQEH 174
           G  +H
Sbjct: 582 GLCKH 586



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A      +   G  PD+++YN II G    ++  EA Q+ +++    + P+
Sbjct: 583 LCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPD 642

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  L+  FCKE R DDA  +   M++ G   + VTY+ LI G  ++  +  A+++  
Sbjct: 643 AVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMH 702

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           EM  N     +    T    + D + + G +   LLL
Sbjct: 703 EMLRNGC---VVSACTTYNTIIDRLCKEGCLKQALLL 736



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD    +F  +  RG  P+I TYN ++ G C   ++DEA    E +      P+ +
Sbjct: 550 KEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVV 609

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ I+ID   K  +  +A  +  +M++ G   + VTY+ L+  + K +    A  + + M
Sbjct: 610 SYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM 669

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNG 150
            +  + P+       I+G     R  +A +L   MLRNG
Sbjct: 670 IKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 708



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 18/178 (10%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LK 59
           L KE  LD A  L  ++ T R    D ++Y T+I G C   +LD A +L  ++  V+ L 
Sbjct: 759 LCKEGRLDEASSLLSEMDTLR----DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLC 814

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
             S TF +LIDAF K  R+D+A  +   M+++G   +V+TY+ +I    K   +  A+++
Sbjct: 815 ITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWEL 874

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           ++EM    I  +              GR  EA+Q+ + M  +    D L    +A ++
Sbjct: 875 FDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKWEDVAPHS 932



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 52/199 (26%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL---TCV---- 56
           KE   D A+ +   +   G++PD +TYNT+I G    NRL +A +L  ++    CV    
Sbjct: 655 KEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSAC 714

Query: 57  -----------------------------QLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
                                         ++ N++T+ I ID  CKEGR+D+A+ + S+
Sbjct: 715 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 774

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM------CENNISPNI-------AG 134
           M       + V+Y+ +I G  K++ +  A  +  EM      C  + + N+         
Sbjct: 775 M---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTK 831

Query: 135 RPTEAMQLYDSMLRNGIMP 153
           R  EA+ L   M++ G  P
Sbjct: 832 RLDEALTLLGLMVQRGCSP 850


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 76/127 (59%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A+KL G +T RG +PD+ T+NT++  YC+L +++E   L +++    L+P+ +
Sbjct: 286 KDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIV 345

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  +ID  CK   +  A    ++++++G K NV  Y+ LI GY ++ ++  A D  E M
Sbjct: 346 SYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETM 405

Query: 124 CENNISP 130
             N I P
Sbjct: 406 KSNGIQP 412



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           +L DRGL+P++  YN +I GY     +  A+   E +    ++P ++T+  L+   C  G
Sbjct: 369 ELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAG 428

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----- 131
            +++A  +FS+  E      V+ Y+ +I GY K   M  A   +EEM    ISPN     
Sbjct: 429 LVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYT 488

Query: 132 -------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   +G   EA +L+D M+ +G++PD +   TL
Sbjct: 489 TLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTL 525



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++  A K+   + ++G+E D ITYN +I G C  ++++EA++L   +T    KP+
Sbjct: 249 LNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPD 308

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  L+ A+C  G+M++   +  +M  +G + ++V+Y  +IDG+ K+++++ A +   
Sbjct: 309 LFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLT 368

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E+ +  + PN+             G  + A+   ++M  NGI P  +   +L
Sbjct: 369 ELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSL 420



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 12/146 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           +Y  +I   C   ++D   ++  +L    L+P  +T+ +L+DA CK GR+++A  +  +M
Sbjct: 13  SYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRM 72

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRP 136
            + G   +VVT+  LI+G  + +       V +EM +  +SPN              G  
Sbjct: 73  EQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHC 132

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLA 162
           ++A++L+D M+   + P  +  + +A
Sbjct: 133 SQALRLFDEMVLKKMKPTAVTYNLIA 158



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +DA  ++  +L   GL+P ++TYN ++   C   R++EA +L  ++    + P+
Sbjct: 21  LCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPS 80

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ILI+   +  R  +  ++  +M + G   N V Y+ LI  + +  +   A  +++
Sbjct: 81  VVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFD 140

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    + P               G    A ++ + ML  G+     L +T+  + LQ +
Sbjct: 141 EMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRT 200

Query: 170 GSQEHCI 176
              E  +
Sbjct: 201 RRLESVV 207



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   ++ A  +F Q  +  ++  +I Y  +I GYC L ++ EAV  FE++    + PN 
Sbjct: 425 CHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNK 484

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           +T+T L+ A+ K G  ++A+ +F +M+  G   + +TY  LI
Sbjct: 485 LTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 526



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 65/225 (28%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS------------------------ 39
           ++ H   AL+LF ++  + ++P  +TYN I    C                         
Sbjct: 128 RKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCG 187

Query: 40  ------------LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR---------- 77
                         RL+  V +  ++    ++PN    T  +   CK G+          
Sbjct: 188 LFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFK 247

Query: 78  -------MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                  M +AT +   ML KG + + +TY+ +I G  K   M+ A  ++ +M      P
Sbjct: 248 TLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKP 307

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G+  E   L D M   G+ PD +   T+ D
Sbjct: 308 DLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIID 352



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  ++T +I A CK G++D    M +++   G +  VVTY+ L+D   KS  ++ AF + 
Sbjct: 10  NEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLK 69

Query: 121 EEMCENNISPNIA 133
             M +  ++P++ 
Sbjct: 70  GRMEQGGMTPSVV 82



 Score = 42.7 bits (99), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+  F ++  RG+ P+ +TY T++  Y      +EA +LF+++    + P++IT+  LI 
Sbjct: 468 AVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI- 526

Query: 71  AFCKE 75
           A C E
Sbjct: 527 ARCSE 531


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 48/214 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITY+T+I GYC   ++DEA +L   +  V +KP+ +
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY--- 120
           T+  LI+ +CK  RM+DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y   
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 121 ----------------EEMCENNISP---------------------NI-------AGRP 136
                             +C+NN++                      NI        GR 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            EA  L+ ++  NG++PD    S +A+ NL   G
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAE-NLIEQG 703



 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 79/124 (63%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +L  ++ DRG+  D I +N+II  +C   R+ E+ +LF+ +  + +KP+ IT++ L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+AT + + M+  G K + VTY+ LI+GY K   M+ A  ++ EM  + +
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 129 SPNI 132
           SP+I
Sbjct: 581 SPDI 584



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFT 66
           DA   +  ++T  G  P++ +YN ++ G C  NR  EA++L + +        P+ +++T
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYT 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+ F KEG +D A   + +ML++G   NVVTYS +I    K+Q M  A +V   M +N
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            + PN             +G+P EA+     M  +G+ PD +  ++L DY
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + PN   F+ILI 
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+G++D A ++FSKM ++G   + VTY  +I    KS  ++ A   +E+M +  +SP
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 131 -NIA----------------------------------------------GRPTEAMQLY 143
            NI                                               GR  E+ +L+
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ PD +  STL D
Sbjct: 503 DLMVRIGVKPDIITYSTLID 522



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ P+  TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  MF  M ++G K  + TY  L+ GY     +     + +
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I PN              G+  +AM ++  M + G+ PD +   T+
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  LD A   + ++ DRG+ P+++TY++II   C    +D+A+++   +    + PN
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++  +C  G+  +A     KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P I             G   E   L D M+RNGI P+  + S L
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL+L   + D G +  PD+++Y T+I G+     LD+A   + ++    + PN +T++ +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A CK   MD A  + + M++ G   N  TY+ ++ GY  S   K A    ++M  + +
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGV 300

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++             GR TEA +++DSM + G+ P+     TL
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL PD +TY T+I   C   R+++A++ FE++   +L P +I
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI + C   + D A  +  +ML++G   + + ++ +ID + K   +  +  +++ M
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P+I            AG+  EA +L  SM+  G+ PD +  +TL
Sbjct: 506 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A++ F Q+ D  L P  I YN++I   C  ++ D+A +L  ++    +  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++I F  +ID+ CKEGR+ ++  +F  M+  G K +++TYS LIDGY  +  M  A  + 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
             M    + P+       I G     R  +A+ L+  M  +G+ PD
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 67/122 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T+ G + ++ TYN I+ G C  N  DEA+++F+ L    L+  + TF I+I
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GR D+A  +F+ +   G   +V TYS + +   +   ++   D++  M EN  +
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCT 721

Query: 130 PN 131
            N
Sbjct: 722 AN 723



 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I     + R DEA  LF  L+   L P+  T++++
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +   ++G +++   +F  M E G  AN
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTAN 723


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+   LD A +LF  +  +G++P ++ YN +I G C   ++ +AV    K+      P+
Sbjct: 495 FIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPD 554

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T + +ID + K+  +D A  MF +M+++  K NVV Y+ LI+G+ K  +M  A  V+ 
Sbjct: 555 EYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFR 614

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M   N+ PN+             G+P +A   ++ ML N  +P+
Sbjct: 615 AMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPN 659



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++   +T+ G EPDI TYN +I   CS  R+ EA +  E+     L PN  ++T 
Sbjct: 326 VDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTP 385

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ A+CK+G    A+ M  K+ E G K ++V+Y   I G      +  A  V E+M E  
Sbjct: 386 LMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKG 445

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+              GR   A  L   ML   + PD  + +TL D
Sbjct: 446 VFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVD 493



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 24/195 (12%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+  LD+ALK+FGQ+  +  +P+++ Y ++I G+C +  +  A ++F  +    L+PN 
Sbjct: 566 VKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNV 625

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-----------KSQ 111
           +T+TILI  F K G+ + A   F  ML      N  T+  LI+G               +
Sbjct: 626 VTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITNTTLLIEKNEE 685

Query: 112 NMKS-AFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLL 158
           N +S   D +  M     S  IA            G    A  L   MLR G + D +  
Sbjct: 686 NDRSLILDFFATMISEGWSQVIATYNSIIVCLCKHGMVDTAQLLQTKMLRKGFLMDSVCF 745

Query: 159 STLADYNLQSSGSQE 173
           S L     Q+  S+E
Sbjct: 746 SALLHGLCQTGKSKE 760



 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ + G +PD+++Y   I G  +   +D A+ + EK+    + P++  + +L+   CK+G
Sbjct: 405 KIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKG 464

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133
           R   A ++ S+ML+   + +   Y+ L+DG+ ++  +  A +++E +    I P +    
Sbjct: 465 RFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYN 524

Query: 134 ---------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                    G+ T+A+   + M      PD    ST+ D
Sbjct: 525 VMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVID 563



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL +  ++ ++G+ PD   YN ++ G C   R   A  L  ++  + L+P++  +  
Sbjct: 431 IDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYAT 490

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D F +   +D AT +F  ++ KG    VV Y+ +I G  K   M  A     +M   N
Sbjct: 491 LVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIAN 550

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +P+     T             A++++  M++    P+ +  ++L +
Sbjct: 551 HAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLIN 598



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   KL       G  P+++ YN II GYC    L  A ++FE+L      P   T+  
Sbjct: 221 VEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGA 280

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID FCK G+      + ++M   G   NV  ++ +ID  +K   +  A ++   M E  
Sbjct: 281 LIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMG 340

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             P+I             GR  EA +  +      ++P+
Sbjct: 341 CEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPN 379



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 60/128 (46%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A ++F +L  +G  P + TY  +I G+C   +     QL  ++  + L  N  
Sbjct: 252 KKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVK 311

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  +IDA  K G +D A  M   M E G + ++ TY+ LI+       +K A +  E  
Sbjct: 312 VFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERA 371

Query: 124 CENNISPN 131
            E  + PN
Sbjct: 372 KERTLLPN 379



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 32/187 (17%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +L  ++   GL  ++  +N+II        +D+A ++   +T +  +P+  T+ ILI+  
Sbjct: 296 QLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFS 355

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C  GR+ +A     +  E+    N  +Y+ L+  Y K  +   A D+  ++ E    P++
Sbjct: 356 CSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDL 415

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDG--------------------LLLST 160
                        G    A+ + + M+  G+ PD                     LLLS 
Sbjct: 416 VSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSE 475

Query: 161 LADYNLQ 167
           + D NLQ
Sbjct: 476 MLDLNLQ 482



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 48/160 (30%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFTILIDAFC 73
           + +R  +P +   N++IC Y     +D+AV++F    E   C    P  +    L++   
Sbjct: 119 MKNRNFKPTLEALNSVICVYAEYGFVDKAVKMFYMVCELYNCF---PCVVANNSLLNCLV 175

Query: 74  KEGRMDDATMMFSKMLEKGPK--------------------------------------- 94
           K G++D A  ++ KMLE+G                                         
Sbjct: 176 KNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKVEEGRKLIDDRWGNG 235

Query: 95  --ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
              NVV Y+ +IDGY K  ++K A  V+EE+      P +
Sbjct: 236 CVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTL 275



 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 39/97 (40%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L  F  +   G    I TYN+II   C    +D A  L  K+       +S+ F+ L+  
Sbjct: 692 LDFFATMISEGWSQVIATYNSIIVCLCKHGMVDTAQLLQTKMLRKGFLMDSVCFSALLHG 751

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            C+ G+  +   + S  L K        YS  +D Y 
Sbjct: 752 LCQTGKSKEWRNIISGDLTKIDFQTAFEYSLKLDKYL 788


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ P I TYN++I   C+L        L  ++   ++ PN
Sbjct: 218 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPN 277

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG++ +A  +   M+++G + NVVTY+ L+DG+     M  A  V++
Sbjct: 278 VVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFD 337

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P++              R  +AM L++ M R  ++P+ +  STL
Sbjct: 338 TMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL 389



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 91/159 (57%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +G  PD+++Y+T+I GYC + R+++A+ LFE++   +L PN++T++ 
Sbjct: 329 MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 388

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C  GR+ DA  +F +M+ +G   + V+Y  L+D   K++ +  A  + + +  +N
Sbjct: 389 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + P+I            AG    A  L+ ++   G+ P+
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPN 487



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     A  +  ++   G +P+I T+NT+I G C   ++ E + LF+K+     +PN 
Sbjct: 114 CHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNV 173

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G    A  +   M +   + +VV Y+ +ID   K + +  AF+++ E
Sbjct: 174 VTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSE 233

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + IMP+ ++ ST+ D
Sbjct: 234 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 286



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K  H    L L  Q+   G+ P+I T N +I  +C L RL  A  +  K+  +  +PN
Sbjct: 78  ITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPN 137

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  LI   C EG++ +   +F KM+ +G + NVVTY  LI+G  K  +  +A  +  
Sbjct: 138 IATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLR 197

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
            M + N  P++              + T+A  L+  M+  GI P
Sbjct: 198 SMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISP 241



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 23/163 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  RG+EP+++TYN ++ G+C  + +DEAV++F+ + C    P+
Sbjct: 288 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPD 347

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++++ LI+ +CK  R++ A  +F +M  K    N VTYS L+ G               
Sbjct: 348 VVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHG--------------- 392

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +C         GR  +A+ L+  M+  G +PD +    L DY
Sbjct: 393 -LCH-------VGRLQDAIALFHEMVTRGQIPDFVSYCILLDY 427



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +   L LF ++   G +P+++TY T+I G C +     A++L   +     +P+ + 
Sbjct: 151 EGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVV 210

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T +ID+ CK+ ++  A  +FS+M+ +G   ++ TY+ LI         K    +  EM 
Sbjct: 211 YTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMV 270

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + I PN+             G+  EA  + D M++ G+ P+ +  + L D
Sbjct: 271 NSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 321



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ LF ++  + L P+ +TY+T++ G C + RL +A+ LF ++      P+ +++ I
Sbjct: 364 IEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCI 423

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK  R+D+A  +   +       ++  Y+ +IDG  ++  +++A D++  +    
Sbjct: 424 LLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKG 483

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + PN+             G   EA +L+  M R G  P+G        YNL + G
Sbjct: 484 LHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNG------CTYNLITRG 532



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++  RG  PD ++Y  ++   C   RLDEA+ L + +    + P+ 
Sbjct: 394 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDI 453

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +TI+ID  C+ G ++ A  +FS +  KG   NV TY+ +I+G  +   +  A  ++ E
Sbjct: 454 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGE 513

Query: 123 MCENNISPN 131
           M     SPN
Sbjct: 514 MKRKGYSPN 522



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A+ L   +    ++PDI  Y  +I G C    L+ A  LF  L+   L PN
Sbjct: 428 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPN 487

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I+  C++G + +A+ +F +M  KG   N  TY+ +  G+ ++        + +
Sbjct: 488 VWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQ 547

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 548 EMLARGFSADVS 559



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL  F ++      P I  +  ++     +      + L  ++    + PN  T  I
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 108

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI++FC   R+  A  + +K+L+ G + N+ T++ LI G      +     ++++M    
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN+             G  + A++L  SM +    PD ++ +++ D
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIID 216



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           ++NT      + N LD+A+  F ++  +   P+   FT L+ +  K         +  +M
Sbjct: 35  SHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQM 94

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
              G   N+ T + LI+ +   Q +  AF V  ++ +    PNIA            G+ 
Sbjct: 95  DSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKI 154

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E + L+D M+  G  P+ +   TL +
Sbjct: 155 GEVLHLFDKMIGEGFQPNVVTYGTLIN 181



 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KLFG++  +G  P+  TYN I  G+   N     +QL +++       +  T T+
Sbjct: 504 LAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTV 563

Query: 68  LIDAFCKEGRMDDATMMFSKMLE 90
           L++    +G       + S+ L+
Sbjct: 564 LVEMLSDDGLDQSVKQILSEFLQ 586


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ P I TYN++I   C+L        L  ++   ++ PN
Sbjct: 209 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPN 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG++ +A  +   M+++G + NVVTY+ L+DG+     M  A  V++
Sbjct: 269 VVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFD 328

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     +P++              R  +AM L++ M R  ++P+ +  STL
Sbjct: 329 TMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL 380



 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 91/159 (57%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +G  PD+++Y+T+I GYC + R+++A+ LFE++   +L PN++T++ 
Sbjct: 320 MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 379

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C  GR+ DA  +F +M+ +G   + V+Y  L+D   K++ +  A  + + +  +N
Sbjct: 380 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + P+I            AG    A  L+ ++   G+ P+
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPN 478



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     A  +  ++   G +P+I T+NT+I G C   ++ E + LF+K+     +PN 
Sbjct: 105 CHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNV 164

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G    A  +   M +   + +VV Y+ +ID   K + +  AF+++ E
Sbjct: 165 VTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSE 224

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + IMP+ ++ ST+ D
Sbjct: 225 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 277



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K  H    L L  Q+   G+ P+I T N +I  +C L RL  A  +  K+  +  +PN
Sbjct: 69  ITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPN 128

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  LI   C EG++ +   +F KM+ +G + NVVTY  LI+G  K  +  +A  +  
Sbjct: 129 IATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLR 188

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
            M + N  P++              + T+A  L+  M+  GI P
Sbjct: 189 SMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISP 232



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 23/163 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  RG+EP+++TYN ++ G+C  + +DEAV++F+ + C    P+
Sbjct: 279 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPD 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++++ LI+ +CK  R++ A  +F +M  K    N VTYS L+ G               
Sbjct: 339 VVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHG--------------- 383

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +C         GR  +A+ L+  M+  G +PD +    L DY
Sbjct: 384 -LCH-------VGRLQDAIALFHEMVTRGQIPDFVSYCILLDY 418



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +   L LF ++   G +P+++TY T+I G C +     A++L   +     +P+ + 
Sbjct: 142 EGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVV 201

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T +ID+ CK+ ++  A  +FS+M+ +G   ++ TY+ LI         K    +  EM 
Sbjct: 202 YTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMV 261

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + I PN+             G+  EA  + D M++ G+ P+ +  + L D
Sbjct: 262 NSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 312



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ LF ++  + L P+ +TY+T++ G C + RL +A+ LF ++      P+ +++ I
Sbjct: 355 IEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCI 414

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK  R+D+A  +   +       ++  Y+ +IDG  ++  +++A D++  +    
Sbjct: 415 LLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKG 474

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + PN+             G   EA +L+  M R G  P+G        YNL + G
Sbjct: 475 LHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNG------CTYNLITRG 523



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++  RG  PD ++Y  ++   C   RLDEA+ L + +    + P+ 
Sbjct: 385 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDI 444

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +TI+ID  C+ G ++ A  +FS +  KG   NV TY+ +I+G  +   +  A  ++ E
Sbjct: 445 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGE 504

Query: 123 MCENNISPN 131
           M     SPN
Sbjct: 505 MKRKGYSPN 513



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A+ L   +    ++PDI  Y  +I G C    L+ A  LF  L+   L PN
Sbjct: 419 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPN 478

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I+  C++G + +A+ +F +M  KG   N  TY+ +  G+ ++        + +
Sbjct: 479 VWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQ 538

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 539 EMLARGFSADVS 550



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL  F ++      P I  +  ++     +      + L  ++    + PN  T  I
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 99

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI++FC   R+  A  + +K+L+ G + N+ T++ LI G      +     ++++M    
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 159

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN+             G  + A++L  SM +    PD ++ +++ D
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIID 207



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           ++NT      + N LD+A+  F ++  +   P+   FT L+ +  K         +  +M
Sbjct: 26  SHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQM 85

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
              G   N+ T + LI+ +   Q +  AF V  ++ +    PNIA            G+ 
Sbjct: 86  DSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKI 145

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E + L+D M+  G  P+ +   TL +
Sbjct: 146 GEVLHLFDKMIGEGFQPNVVTYGTLIN 172



 Score = 40.4 bits (93), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KLFG++  +G  P+  TYN I  G+   N     +QL +++       +  T T+
Sbjct: 495 LAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTV 554

Query: 68  LIDAFCKEGRMDDATMMFSKMLE 90
           L++    +G       + S+ L+
Sbjct: 555 LVEMLSDDGLDQSVKQILSEFLQ 577


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ H   A  LF ++ D+G+ PD+ITY+ +I  +C   R  +A QL   +   Q+ P+
Sbjct: 86  LCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPD 145

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LI+A  KEG++ +A  ++  ML +G     +TY+ +IDG+ K   +  A  + +
Sbjct: 146 VVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLD 205

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M   + SP++            A R    M+++  M R GI+ + +  +TL
Sbjct: 206 SMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTL 257



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 80/130 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  +  A +++G +  RG+ P  ITYN++I G+C  +RL++A ++ + +      P+
Sbjct: 156 LVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPD 215

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF+ LI+ +CK  R+D+   +F +M  +G  AN VTY+ LI G+ +  ++ +A D+  
Sbjct: 216 VVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLN 275

Query: 122 EMCENNISPN 131
            M  + ++PN
Sbjct: 276 VMISSGVAPN 285



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++ + G +P    Y TII G C +   + A+ L  K+    +K + + +  +ID
Sbjct: 29  ALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIID 84

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G    A  +F++M +KG   +V+TYS +ID + +S     A  +  +M E  I+P
Sbjct: 85  RLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINP 144

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G+ +EA ++Y  MLR GI P  +  +++ D
Sbjct: 145 DVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMID 189



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           ++AL L  ++ +  ++  ++ YN II   C       A  LF ++    + P+ IT++ +
Sbjct: 58  ESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM 117

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID+FC+ GR  DA  +   M+E+    +VVT+S LI+   K   +  A ++Y +M    I
Sbjct: 118 IDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 129 SPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P        I G     R  +A ++ DSM      PD +  STL
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTL 222



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 72/130 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A ++   +  +   PD++T++T+I GYC   R+D  +++F ++    +  N++
Sbjct: 193 KQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTV 252

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI  FC+ G +D A  + + M+  G   N +T+  ++      + ++ AF + E++
Sbjct: 253 TYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDL 312

Query: 124 CENNISPNIA 133
            ++ + P I 
Sbjct: 313 QKSEVCPRIV 322



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 16/117 (13%)

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           +P+ +TFT L++  C EGR+  A  +  +M+E+G +     Y  +I+G  K  + +SA +
Sbjct: 7   RPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALN 62

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  +M E +I  ++             G    A  L+  M   GI PD +  S + D
Sbjct: 63  LLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMID 119


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   LD A +L   +  RG  PD+I Y+T+I G C   ++DEA  L+E +T      +
Sbjct: 298 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDAD 357

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK GR+D+A ++ ++M+  G   + +TY+ LI G     ++  A ++ E
Sbjct: 358 VVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVE 417

Query: 122 EMCENNISPN-------IAGR------PTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  +N +P+       I G        + A+  +  M+ NG++PD +  S L
Sbjct: 418 EMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSIL 470



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  + AA ++  ++ D G  P+++TYN+++ G C   R+ +A+ L   +TC    PN
Sbjct: 158 LCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 217

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK GR+ DA  M + M++KG   +++ Y+ LI+G  K+  +  +  +  
Sbjct: 218 VVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLR 277

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 I P++            + R  EA +L   +   G  PD +L STL D
Sbjct: 278 RAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLID 331



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ AL+ F ++ DR   P++ITY+ +I G C  NR+ +AV+L E +      P+
Sbjct: 89  LCRAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 147

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+TIL+D  CKE ++  A  +  +ML+ G   N+VTY+ L+ G  +++ +  A  +  
Sbjct: 148 VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMR 207

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M     +PN+             GR  +A  +   M+  G  PD ++ + L
Sbjct: 208 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNML 259



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +   + D+G  PD++ YN +I G C  +++DE++ L  +     +KP+
Sbjct: 228 LCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 287

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ +I   C+  R+D+A  +   +  +G   +V+ YS LIDG  K+  +  AFD+YE
Sbjct: 288 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE 347

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  +    ++            AGR  EA  L   M+R G  P  +  ++L
Sbjct: 348 VMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSL 399



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 90/158 (56%), Gaps = 14/158 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D G EP+++TYN++I G C  N  D A +LFE +  V+  P+ +T+  L+D   + G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           ++ A  +F +ML++    +V++++ L+ G  ++  +++A + + +M ++  SPN+     
Sbjct: 61  LERAMALFQEMLDRRSH-DVISFNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSV 118

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  A R ++A++L +SM   G  PD +  + L D
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVD 156



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D ++ L  +    G++PD++TY+++I G C  NRLDEA +L   +      P+
Sbjct: 263 LCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD 322

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I ++ LID  CK G++D+A  ++  M   G  A+VVTYS LIDG  K+  +  A  +  
Sbjct: 323 VILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLA 382

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P+       I G        EA++L + M R+   P  +  + L
Sbjct: 383 RMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNIL 434



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 47/201 (23%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNT----------------------------------II 34
           D A +LF  +      P ++TYNT                                  ++
Sbjct: 27  DRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDVISFNILV 86

Query: 35  CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94
            G C   +++ A++ F K+   +  PN IT+++LID  CK  R+  A  +   M  +G  
Sbjct: 87  TGLCRAGKIETALEFFRKMD-DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCS 145

Query: 95  ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQL 142
            +V+TY+ L+DG  K   + +A++V  EM +    PN+            A R ++A+ L
Sbjct: 146 PDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALAL 205

Query: 143 YDSMLRNGIMPDGLLLSTLAD 163
              M   G  P+ +   TL D
Sbjct: 206 MRDMTCRGCTPNVVTYGTLID 226


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A++L G ++  GL PD++TYNT+ICG C  +R+ EA +   K+     +PN
Sbjct: 340 LCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPN 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +ID +CK+G + DA  +    + KG K +  TY  L++G+ +  +   A  V++
Sbjct: 400 DFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFK 459

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +     + P+I             G    A+QL + M   G  PD      +  YNL  +
Sbjct: 460 DGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPD------IWTYNLIIN 513

Query: 170 G 170
           G
Sbjct: 514 G 514



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L  ++ ++G +PDI TYN II G C +  L +A  L          P+  T+  L+D
Sbjct: 489 ALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVD 548

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++ ++D A  + ++M  +G   +V+TY+ L++G  K+   +   ++++ M E   +P
Sbjct: 549 GYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAP 608

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI            + +  EA+ L   M   G+ PD +   TL
Sbjct: 609 NIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTL 651



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  L G    +G  PDI TYNT++ GYC   +LD A++L  ++    + P+ IT+  
Sbjct: 521 LSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNT 580

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CK  + ++   +F  M EKG   N++TY+ +I+    S+ +  A D+  EM    
Sbjct: 581 LLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKG 640

Query: 128 ISPNIAGRPT 137
           ++P++    T
Sbjct: 641 LTPDVVSFGT 650



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 91/173 (52%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  LD+A++L  ++  +G+ PD+ITYNT++ G C   + +E +++F+ +T     PN I
Sbjct: 552 RQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNII 611

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I++ C   ++++A  +  +M  KG   +VV++  LI G+ K  ++  A+ ++  M
Sbjct: 612 TYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGM 671

Query: 124 CEN-NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  ++S   A                 A++L+  M +NG  PD      L D
Sbjct: 672 EKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLID 724



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ +F     +GL P II YNT+I G C    +  A+QL  ++     KP+  T+ ++
Sbjct: 452 DQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLI 511

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  CK G + DA  +    + KG   ++ TY+ L+DGY +   + SA ++   M    +
Sbjct: 512 INGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGM 571

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +P++              +  E M+++ +M   G  P+ +  +T+ +
Sbjct: 572 TPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIE 618



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 1/131 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    +  +++F  +T++G  P+IITYNTII   C+  +++EAV L  ++    L P+
Sbjct: 585 LCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPD 644

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN-VVTYSCLIDGYFKSQNMKSAFDVY 120
            ++F  LI  FCK G +D A  +F  M ++   ++   TY+ +I  + +  NMK A  ++
Sbjct: 645 VVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLF 704

Query: 121 EEMCENNISPN 131
            EM +N   P+
Sbjct: 705 SEMKKNGCDPD 715



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF ++  RG+ P++ T+N  I G C    LD AV+L   ++   L+P+ +T+  +I   
Sbjct: 316 RLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGL 375

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN- 131
           C++ R+ +A     KM+  G + N  TY+ +IDGY K   +  A  + ++       P+ 
Sbjct: 376 CRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDE 435

Query: 132 -----------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        G P +AM ++   L  G+ P  ++ +TL
Sbjct: 436 FTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTL 476



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 63/123 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +LF ++ +  L PD+ T+N ++   C    + E+ +LF+K+    + PN  TF I 
Sbjct: 277 DRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIF 336

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   CKEG +D A  +   +  +G + +VVTY+ +I G  +   +  A +   +M     
Sbjct: 337 IQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGF 396

Query: 129 SPN 131
            PN
Sbjct: 397 EPN 399



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL+L   +   G   + + Y T++ G+      D A +LF+++    L P+  TF  L+
Sbjct: 243 AALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLV 302

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A CK+G + ++  +F K+L++G   N+ T++  I G  K  ++  A  +   +    + 
Sbjct: 303 HALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLR 362

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P++              R  EA +    M+  G  P+    +++ D
Sbjct: 363 PDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIID 408



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +  A+  F ++     +P + +YN I+         ++A +++ ++   +++ +  
Sbjct: 167 RKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVY 226

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TI I +FC+ GR   A  +   M   G  +N V Y  ++ G+++  +   A ++++EM
Sbjct: 227 TYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            E  + P++             G   E+ +L+D +L+ G+ P+
Sbjct: 287 LECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPN 329



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 36/168 (21%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------------------- 46
           ++ A+ L G++  +GL PD++++ T+I G+C +  LD A                     
Sbjct: 626 VNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYN 685

Query: 47  ---------------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                          ++LF ++      P++ T+ +LID FCK G ++       + +EK
Sbjct: 686 IIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEK 745

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEA 139
           G   ++ T+  +++       ++ A  +   M + +I P+      EA
Sbjct: 746 GFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTVNTIFEA 793



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++  + + A K++ ++ D+ +E D+ TY   I  +C   R   A++L   +  +    
Sbjct: 199 ILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFS 258

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++ +  ++  F + G  D A  +F +MLE     +V T++ L+    K   +  +  ++
Sbjct: 259 NAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLF 318

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +++ +  + PN+             G    A++L   + R G+ PD +  +T+
Sbjct: 319 DKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTV 371



 Score = 42.4 bits (98), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/88 (22%), Positives = 45/88 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ ++  AL+LF ++   G +PD  TY  +I G+C    +++  +   +       P+  
Sbjct: 693 EQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLT 752

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEK 91
           TF  +++  C E ++ +A  +   M++K
Sbjct: 753 TFGRVLNCLCVEHKVQEAVGIIHLMVQK 780


>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
          Length = 690

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  ++GQ+  RG+EP I+TY+++I G+C    L     L+E +  +   P+ + + +L+D
Sbjct: 410 AFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVD 469

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K+G M  A     KML +  + NVV ++ LIDG+ +      A  V+  M    I P
Sbjct: 470 GLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKP 529

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++A            GR  EA+ L+  M + G+ PD L   TL D
Sbjct: 530 DVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLID 574



 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A +L   + D G  P+++T+ T+I G+C    +D A  LF+ +    ++P+ I ++
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K G +     +FS+ L KG K +VV +S  ID Y KS ++ +A  VY+ M   
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISPN+             GR  EA  +Y  +L+ G+ P  +  S+L D
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLID 434



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L    KLF Q   +G++ D++ +++ I  Y     L  A  +++++ C  + PN +
Sbjct: 333 KAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVV 392

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI   C++GR+ +A  M+ ++L++G + ++VTYS LIDG+ K  N++S F +YE+M
Sbjct: 393 TYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDM 452

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLST 160
            +    P++         L D + + G+M   +  S 
Sbjct: 453 IKMGYPPDVVIYGV----LVDGLSKQGLMLHAMRFSV 485



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 2   LIKECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L+ +CH ++ A K F  L +  +EPDI+TYNT+ICGYCSL RLDEA ++FE L      P
Sbjct: 610 LLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGP 669

Query: 61  NSITFTILIDAFCK 74
           N++T TILI   CK
Sbjct: 670 NTVTLTILIHVLCK 683



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 86/163 (52%), Gaps = 16/163 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++K+ GQ     +  +++ +N++I G+C LNR DEA+++F  +    +KP+  TFT ++ 
Sbjct: 484 SVKMLGQ----SIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMR 539

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
               EGR+++A  +F +M + G + + + Y  LID + K         +++ M  N IS 
Sbjct: 540 VSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISA 599

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +IA             R  +A + +++++   + PD +  +T+
Sbjct: 600 DIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTM 642



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 65/127 (51%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             D ALK+F  +   G++PD+ T+ T++       RL+EA+ LF ++  + L+P+++ + 
Sbjct: 511 RFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYC 570

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LIDAFCK  +      +F  M      A++   + +I   FK   ++ A   +  + E 
Sbjct: 571 TLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEG 630

Query: 127 NISPNIA 133
            + P+I 
Sbjct: 631 KMEPDIV 637



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I E  L+ AL LF ++   GLEPD + Y T+I  +C   +    +QLF+ +   ++  + 
Sbjct: 542 IMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADI 601

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
               ++I    K  R++DA+  F+ ++E   + ++VTY+ +I GY   + +  A  ++E 
Sbjct: 602 AVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFEL 661

Query: 123 MCENNISPN 131
           +      PN
Sbjct: 662 LKVTPFGPN 670


>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 500

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 16/168 (9%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            H+D A++LF  +     +PD  +YNT+I G C  +R  EA +LF ++    + P  +T+
Sbjct: 201 AHIDDAVRLFRNIP----KPDACSYNTLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTY 256

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I+   +EG +DDA  MF +M  +G   NVVTYS LIDG  K     SA D+ E + +
Sbjct: 257 TTIINWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLCKGGRAASALDLLERLAK 316

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               PN              G   EAM++ D M   G  PD  L   L
Sbjct: 317 EVKLPNTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKL 364



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 18/174 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS--LNRLDEAVQLFEKLTCVQLK 59
           L+   HL  A  L   +   G  P   TYN ++  +CS     +D+AV+LF  +     K
Sbjct: 160 LVAHSHLPLAHSLLADMRASGFGPTTATYNVLLKAHCSDAAAHIDDAVRLFRNIP----K 215

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P++ ++  LID  C+  R  +A  +FS+M+E G    VVTY+ +I+   +   +  A ++
Sbjct: 216 PDACSYNTLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEM 275

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++EM    I+PN+             GR   A+ L + + +   +P+ ++ S++
Sbjct: 276 FDEMGRRGIAPNVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLPNTIIYSSV 329



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L +E  LD AL++F ++  RG+ P+++TY+++I G C   R   A+ L E+L      P
Sbjct: 262 WLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLP 321

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+I ++ +I+  CKEG + +A  +  +M  +G K +   +  LI G   +     A +  
Sbjct: 322 NTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYL 381

Query: 121 EEMCENNISPN-------------------IAGRPTEAMQLYDSMLRNGI 151
           +EM    + PN                   + G    A Q+Y SM   GI
Sbjct: 382 DEMVLAGVQPNRVTWSLHVRINVAVVTALCVKGEVGRAFQVYQSMRTRGI 431


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 12/177 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  ALK F  +    L P+++T+  +I GYC    L+ AV L++++  V++  N +
Sbjct: 175 KSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVV 234

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID FCK+G M  A  M+S+M+E   + N + Y+ +IDG+F+  +  +A     +M
Sbjct: 235 TYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
               +  +I             G+  EA ++ + M ++ ++PD ++ +T+ +   +S
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKS 351



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 17/170 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   + AA+ ++ +L +RG EPD++  +T+I G     +L EA+  F    C++ K N +
Sbjct: 350 KSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYF----CIE-KANDV 404

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T+LIDA CKEG   +   +FSK+ E G   +   Y+  I G  K  N+  AF +   M
Sbjct: 405 MYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRM 464

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +  ++    T            EA Q++D ML +GI PD  +   L
Sbjct: 465 VQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLL 514



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 16/153 (10%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++TY+T I  +C    L  A++ F  +    L PN +TFT LID +CK G ++ A  +
Sbjct: 161 PNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSL 220

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           + +M       NVVTY+ LIDG+ K   M+ A ++Y  M E+ + PN             
Sbjct: 221 YKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQ 280

Query: 133 AGRPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
            G    AM+    ML  G+  D    G+++S L
Sbjct: 281 RGDSDNAMKFLAKMLNQGMRLDITAYGVIISGL 313



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+K   ++ ++G+  DI  Y  II G C   +L EA ++ E +    L P+ + FT +
Sbjct: 285 DNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTM 344

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++A+ K GRM  A  M+ K++E+G + +VV  S +IDG  K+  +  A   +     N++
Sbjct: 345 MNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDV 404

Query: 129 SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLST 160
              +        G   E  +L+  +   G++PD  + ++
Sbjct: 405 MYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTS 443



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE       +LF ++++ GL PD   Y + I G C    L +A +L  ++    L  +
Sbjct: 413 LCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLD 472

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI     +G M +A  +F +ML  G   +   +  LI  Y K  NM +A D+  
Sbjct: 473 LLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLL 532

Query: 122 EM 123
           +M
Sbjct: 533 DM 534



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +LK    L  RG  P   ++N+++   C L ++  A  +   +     +P+ I++  LID
Sbjct: 40  SLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLID 99

Query: 71  AFCKEGRMDDATMMFSKMLEKGP---KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
             C+ G +  A+++   +        K ++V+++ L +G+ K + +   F VY  +    
Sbjct: 100 GHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVF-VYMGVMLKC 158

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            SPN+            +G    A++ + SM R+ + P+ +  + L D
Sbjct: 159 CSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLID 206



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +L  A KL  ++   GL  D++ Y T+I G  S   + EA Q+F+++    + P+
Sbjct: 448 LCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPD 507

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           S  F +LI A+ KEG M  A+ +   M  +G    V    C
Sbjct: 508 SAVFDLLIRAYEKEGNMAAASDLLLDMQRRGLVTAVSDADC 548


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 12/162 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAAL++F ++ +RG  P   TY T+I G C L ++ EA +LF+++      P  +T+  
Sbjct: 172 MDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXS 231

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+   +D A  +  +M  KG K NV TYS L+DG+ KS     A ++ + M    
Sbjct: 232 LIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRR 291

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLL 157
             PN+             G+  EA+++ D M   G+ PD  L
Sbjct: 292 HLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGL 333



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A++L  ++  +G++P++ TY++++ G+C       A++L + +   +  PN IT++ 
Sbjct: 242 LDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYST 301

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   CKEG++ +A  +  +M  +G + +   Y  +I G+        A +  +EM    
Sbjct: 302 LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGG 361

Query: 128 ISPN--------------IAG----RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           ISPN              + G     P  A QLY SM   GI  D     +L +Y
Sbjct: 362 ISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNY 416



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 13/176 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++ +   EP   +Y T+       N+L  A++ +  +  + + P+  +  +LI 
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 71  AFCK-EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           A CK  G MD A  +F +M  +G   +  TY  LI G  +   +  A ++++EM     S
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACS 223

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           P +    +             A++L + M   GI P+    S+L D + +S  S  
Sbjct: 224 PTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSR 279



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A+++  ++  +GL PD   Y  II G+C + +  EA    +++    + PN
Sbjct: 306 LCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPN 365

Query: 62  SITFT-------ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            +T++       I++   C E   + A  ++  M  +G   +  T+  L++ +    ++ 
Sbjct: 366 RLTWSLHVRIHNIVVQGLCTE-HPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLH 424

Query: 115 SAFDVYEEMCENNISPN 131
            A  + +EM  +   P+
Sbjct: 425 KAAHLVDEMVLDGCIPD 441


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE   D+A++ + ++++ G+ P+++T+ ++I G+C  NR+D A+++  ++    LK +
Sbjct: 600 FFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLD 659

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LID FCK+  M  A  +FS++LE G   NV  Y+ LI G+     M +A D+Y+
Sbjct: 660 VPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYK 719

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  + IS ++             G    A  LY  +L  GI+PD +L   L +
Sbjct: 720 KMVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVN 773



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           +YN+II G+      D AV+ + +++   + PN +TFT LI+ FCK  RMD A  M  +M
Sbjct: 592 SYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEM 651

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
             K  K +V  Y  LIDG+ K  +MK+A+ ++ E+ E  + PN++            G+ 
Sbjct: 652 KSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKM 711

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             A+ LY  M+ +GI  D    +T+ D
Sbjct: 712 DAAIDLYKKMVNDGISCDLFTYTTMID 738



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 36/169 (21%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+  +DAA      + ++G+EP+++ YN ++  +C +  +D A  +F ++    L+P
Sbjct: 458 LLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQP 517

Query: 61  NSITFTILIDAF-----------------------------------CKEGRMDDATMMF 85
           N+ T++ILID F                                   CK G+   A  M 
Sbjct: 518 NNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEML 577

Query: 86  SKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
             ++ EK       +Y+ +IDG+FK  +  SA + Y EM EN ISPN+ 
Sbjct: 578 QNLIKEKRYSMGCTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVV 626



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 18/182 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  LF +L + GL P++  YN +I G+ +L ++D A+ L++K+    +  +  
Sbjct: 672 KKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKKMVNDGISCDLF 731

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID   K+G +  A+ ++S++L  G   + + Y  L++G  K      A  + EEM
Sbjct: 732 TYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEM 791

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            + + +PN+             G   EA +++D ML  G++ D  +      +NL  SG 
Sbjct: 792 KKKDATPNVLIYSTVIAGHHREGNLNEAFRVHDEMLEKGLVHDDTI------FNLLVSGR 845

Query: 172 QE 173
            E
Sbjct: 846 VE 847



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +AAL++F    +  +    +  N I    C   ++D A      +    ++PN + +  +
Sbjct: 432 EAALEIFNDSFETWIAHGFMC-NKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNM 490

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           + A C+   MD A  +FS+MLEKG + N  TYS LIDG+FK+Q+ ++A++V  +M  +N 
Sbjct: 491 MLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNF 550

Query: 129 SPN 131
             N
Sbjct: 551 EAN 553



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 71/127 (55%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE +++ A+K+  ++   G+   +I   ++I G+C+ N L +A+  F ++    L P+ 
Sbjct: 321 VKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDK 380

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + F+++I+ FCK   M+ A  ++ +M   G   + V    +I G  K+++ ++A +++ +
Sbjct: 381 VMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIFND 440

Query: 123 MCENNIS 129
             E  I+
Sbjct: 441 SFETWIA 447



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 13/162 (8%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+   +D A+  F  + DR + P +   N ++      N +DEA +++ K+  + +  ++
Sbjct: 180 IRNRRMDYAVDCFNLMVDRNVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDN 239

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T  +L+ A  +E + ++A  +F +++ +G + + + +S  +    K +++  A D+  E
Sbjct: 240 VTTQLLMRASLRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLRE 299

Query: 123 MCENNISPNIA-------------GRPTEAMQLYDSMLRNGI 151
           M E    P                G   EA+++ D M+  GI
Sbjct: 300 MREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGI 341



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +D A +++ ++   G+  D +T   ++       + +EA+++F ++     +P+
Sbjct: 214 LVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAMKIFRRVMSRGAEPD 273

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + F++ + A CK   +  A  +  +M EKG   A+  TY+ +I    K  NM+ A  V 
Sbjct: 274 GLLFSLAVQAACKMKDLVMALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVK 333

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +EM    I  ++    +            +A+  ++ M   G+ PD ++ S + ++
Sbjct: 334 DEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEW 389



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 11  ALKLFGQLTDRGLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AL L  ++ ++G  P    TY ++I        ++EAV++ +++    +  + I  T LI
Sbjct: 293 ALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLI 352

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC    +  A   F++M E+G   + V +S +I+ + K+  M+ A ++Y+ M    I+
Sbjct: 353 TGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIA 412

Query: 130 PN 131
           P+
Sbjct: 413 PS 414



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 54/105 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+ +L  A  L+ +L   G+ PD I Y  ++ G     +   A ++ E++      PN
Sbjct: 740 LLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQFVRASKMLEEMKKKDATPN 799

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            + ++ +I    +EG +++A  +  +MLEKG   +   ++ L+ G
Sbjct: 800 VLIYSTVIAGHHREGNLNEAFRVHDEMLEKGLVHDDTIFNLLVSG 844


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 11/175 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +D A+ LF ++ D    P + TY  +I   C   R  EA+ L +++    +KPN  T
Sbjct: 301 ERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHT 360

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T+LID+ C + +++ A  +  +MLEKG   NV+TY+ LI+GY K   ++ A DV E M 
Sbjct: 361 YTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELME 420

Query: 125 ENNISPN-------IAG----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             N+ PN       I G       +AM + + ML   ++PD +  ++L D   +S
Sbjct: 421 SRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D+A +L   + DRGL PD  TY ++I   C   R++EA  LF+ L    + PN + +T
Sbjct: 477 NFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYT 536

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G++++A +M  KML K    N +T++ LI G      +K A  + E+M + 
Sbjct: 537 ALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKI 596

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++ P ++            G    A + +  ML +G  PD    +T 
Sbjct: 597 DLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTF 643



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 24/174 (13%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +C L+ A +L GQ+ ++GL P++ITYN +I GYC    +++A+ + E +    L+PN
Sbjct: 368 LCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPN 427

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  +CK   +  A  + +KMLE+    +VVTY+ LIDG  +S N  SA+    
Sbjct: 428 TRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY---- 482

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
                              +L   M   G++PD    +++ D   +S   +E C
Sbjct: 483 -------------------RLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEAC 517



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A +    + + GL+PD  TY ++I GYC    LD A ++F+++     + N + +T
Sbjct: 233 NVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYT 292

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C E R+D+A  +F KM +      V TY+ LI     S+    A ++ +EM E 
Sbjct: 293 HLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEK 352

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I PNI              +  +A +L   ML  G+MP+ +  + L +
Sbjct: 353 GIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALIN 401



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A+ +  ++ +R + PD++TYN++I G C     D A +L   +    L P+  T+T
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYT 501

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID+ CK  R+++A  +F  + +K    NVV Y+ LIDGY K+  +  A  + E+M   
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSK 561

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           N  PN              G+  EA  L + M++  + P  +   T+  + L   G  +H
Sbjct: 562 NCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPT-VSTDTILIHRLLKDGDFDH 620



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  LF  L  + + P+++ Y  +I GYC   +++EA  + EK+      PN
Sbjct: 507 LCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPN 566

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+TF  LI   C +G++ +AT++  KM++   +  V T + LI    K  +   A+  ++
Sbjct: 567 SLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQ 626

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M  +   P+              GR  +A  +   M  NG+ PD    S+L
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSL 678



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D   +++ ++ +  + P+I TYN ++ GYC +  ++EA Q    +    L P+  T+T 
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTS 258

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C+   +D A  +F +M  KG + N V Y+ LI G    + +  A D++ +M +++
Sbjct: 259 LIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDD 318

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P +            + R +EA+ L   M   GI P+    + L D
Sbjct: 319 CYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLID 366



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 55/109 (50%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L+P + T   +I         D A + F+++     KP++ T+T  I  +C+EGR+ DA 
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAE 657

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            M +KM E G   ++ TYS LI GY       SAF V + M +    P+
Sbjct: 658 DMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPS 706



 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 55/94 (58%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           YNT++        +DE  Q++ ++   ++ PN  T+  +++ +CK G +++A    S ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           E G   +  TY+ LI GY + +++ SAF V++EM
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEM 279



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 31/191 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   D A + F Q+   G +PD  TY T I  YC   RL +A  +  K+    + P+
Sbjct: 612 LLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPD 671

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
             T++ LI  +   GR + A ++  +M + G + +  T+  LI    + +  K       
Sbjct: 672 LFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPG 731

Query: 117 ---------FDVY----EEMCENNISPNIA------------GRPTEAMQLYDSM-LRNG 150
                    FD+     E+M E+ ++PN              G    A +++D M  + G
Sbjct: 732 VCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEG 791

Query: 151 IMPDGLLLSTL 161
           I P  L+ + L
Sbjct: 792 ISPSELVFNAL 802



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 7   HLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           +L  A K+F  +  + G+ P  + +N ++   C L + +EA ++ + + CV   P   + 
Sbjct: 775 NLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESC 834

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            ILI    K+G  +  T +F  +L+ G   + + +  +IDG  K   +++ ++++  M +
Sbjct: 835 KILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEK 894

Query: 126 N 126
           N
Sbjct: 895 N 895


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L+ ++  + + PD++TYNT+I G+C + +L++A++LF ++    + PN  +F ILID
Sbjct: 120 AYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILID 179

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKEG +     + + M+++  K +VVT S LIDGYF  +    A  ++  M +N ++ 
Sbjct: 180 GLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTI 239

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++            A    EA+ L+  M    + PD +  STL D
Sbjct: 240 DLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLID 284



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 71/122 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ LF ++  + + PD ITY+T+I G   L R+     L +++       N
Sbjct: 251 LSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSAN 310

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L++  CK G  D A  +F+K+ +KG + N+VTY+ L+DG  K+  +K A +++ 
Sbjct: 311 VITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFH 370

Query: 122 EM 123
           ++
Sbjct: 371 DL 372



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  +F  +   G+  D+ +YN +I G      +DEAV LF+++    + P++IT++ L
Sbjct: 223 NKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTL 282

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID   K GR+     +  +M   G  ANV+TYS L++   KS +  +A  ++ ++ +   
Sbjct: 283 IDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGF 342

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN+             GR  +A +++  +L  G   D  L + + +
Sbjct: 343 EPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMIN 389



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K  H D A+++F ++ D+G EP+++TYN ++ G C   RL +A ++F  L     + 
Sbjct: 320 VLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRL 379

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           +   +T++I+  C+E   D+A          G   N VTY  +I   FK+   K
Sbjct: 380 DVRLYTVMINGLCREALFDEAY---------GCTPNAVTYEIIIRALFKNDKNK 424



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 54/93 (58%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++   G   ++ITY++++   C     D A+++F K+     +PN +T+ IL+D  C
Sbjct: 298 LIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLC 357

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           K GR+ DA  +F  +L KG + +V  Y+ +I+G
Sbjct: 358 KNGRLKDAQEIFHDLLIKGYRLDVRLYTVMING 390



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD   Y+ II   C    + +A  L+ ++   ++ P+ +T+  LI  FC  G+++DA  +
Sbjct: 99  PDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRL 158

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           F++M  K    NV +++ LIDG  K  ++K    V   M + ++ P++            
Sbjct: 159 FNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFL 218

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             +  +A  ++++M +NG+  D      L  YN+  +G
Sbjct: 219 VKKANKARYIFNAMAQNGVTID------LRSYNIMING 250



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 33/191 (17%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C L+ A  +  ++   G +PD +T  T++ G C  N + +A+   + +     + +++++
Sbjct: 24  CQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIAKGFRLDNVSY 83

Query: 66  TILIDAFCKEGRMD---------------------DATMMFSKMLEKGPKANVVTYSCLI 104
             LI+  CK G                        DA  ++ +M+ K    +VVTY+ LI
Sbjct: 84  GTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLI 143

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIM 152
            G+     ++ A  ++ EM   NI PN+             G       +   M++  + 
Sbjct: 144 YGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVK 203

Query: 153 PDGLLLSTLAD 163
           PD +  S+L D
Sbjct: 204 PDVVTCSSLID 214



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +     +   +  + ++PD++T +++I GY  + + ++A  +F  +    +  +
Sbjct: 181 LCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTID 240

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ I+I+   K   +D+A ++F +M  K    + +TYS LIDG  K   +   +D+ +
Sbjct: 241 LRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLID 300

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM     S N+            +G    A++++  +   G  P+ +  + L D
Sbjct: 301 EMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVD 354



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 33/176 (18%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           RG++ DII  + +I  +  L +L+ A  +  K+  +  +P+++T T L+   C    +  
Sbjct: 4   RGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKK 63

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS---------------------AFDV 119
           A      ++ KG + + V+Y  LI+G  KS   K+                     A+D+
Sbjct: 64  ALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDL 123

Query: 120 YEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           Y EM    I P+            I G+  +A++L++ M    I+P+    + L D
Sbjct: 124 YCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILID 179



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A++LF ++  + + P++ ++N +I G C    +     +   +    +KP+ +T +
Sbjct: 151 QLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCS 210

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +    + + A  +F+ M + G   ++ +Y+ +I+G  K++ +  A  +++EM   
Sbjct: 211 SLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFK 270

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +++P+              GR +    L D M   G   + +  S+L
Sbjct: 271 SMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSL 317


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 96/182 (52%), Gaps = 15/182 (8%)

Query: 7   HLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            +D A +L   + ++   +PDI+ +N II G+C   R+ EA ++ E L  +   PN++T+
Sbjct: 154 RVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTY 213

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T LID FCK G + +A  +F  +  +   A  NVVT++ LI G  K+  ++ AF++ ++M
Sbjct: 214 TTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
              ++  +              GR +E  ++++ MLR G  P  +  +TL   + ++   
Sbjct: 274 KARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSL 333

Query: 172 QE 173
           Q+
Sbjct: 334 QD 335



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 14/172 (8%)

Query: 4   KECHLDAALKLFGQLTDR--GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           K  +L  AL+LF  L+ R    EP+++T+N +I G C  +RL+ A +L +++    L+ +
Sbjct: 222 KSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRAD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T L+D  CK+GR  + + +F +ML +G   +VVTY+ L+  + K+ +++ A  V  
Sbjct: 282 TFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIR 341

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    I P++             G+   A + ++ +LR    P  ++ S L
Sbjct: 342 SMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSAL 393



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A +L  Q+  R L  D  TY T++ G C   R  E  ++FE++      P+
Sbjct: 257 LCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPS 316

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L+ A CK G + DA  +   M+ KG   +V TY+ L++G F++  +++A + +E
Sbjct: 317 VVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFE 376

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++      P              A    EA++ Y  ML   + PD
Sbjct: 377 KILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPD 421



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 49/205 (23%)

Query: 8   LDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---------- 56
           LD AL+LF ++     L P+  TY  II  YC ++RLD+A QL E+ +C           
Sbjct: 86  LDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSV 145

Query: 57  --------------QL----------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                         QL          KP+ + + ++I  FCK GR+ +A  M   ++  G
Sbjct: 146 ARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMG 205

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--ENNISPNI------------AGRPTE 138
              N VTY+ LIDG+ KS N+  A  +++ +   +++  PN+            A R   
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEH 265

Query: 139 AMQLYDSMLRNGIMPDGLLLSTLAD 163
           A +L   M    +  D    +TL D
Sbjct: 266 AFELVKQMKARDLRADTFTYTTLMD 290



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 65/132 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+       ++F ++   G  P ++TY T++  +C    L +A Q+   +    + P+
Sbjct: 292 LCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T+L++   + G++  AT  F K+L +      V YS L+ G  K+  +  A   Y 
Sbjct: 352 VTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYV 411

Query: 122 EMCENNISPNIA 133
           EM +  ++P+ A
Sbjct: 412 EMLDRRLAPDPA 423



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+  T++ +I G C   RL EAV+ + ++      PN     +L+ + C+ G+MD A  +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           F + ++  P  +V+T + LI+G+ + Q +  A +++ EM +N
Sbjct: 61  F-RGIQCSP--SVITLNILINGFCELQLLDKALELFHEMEKN 99



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 49/98 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++   +  +G+ PD+ TY  ++ G     ++  A + FEK+   +  P ++ ++ 
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSA 392

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           L+   CK   +D+A   + +ML++    +  T   L++
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVE 430



 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F ++      P  + Y+ ++ G C    +DEAV+ + ++   +L P+  T  +L++
Sbjct: 371 ATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVE 430

Query: 71  AFCKEGRMD 79
             CK GR D
Sbjct: 431 MLCKRGRTD 439


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   L  A +LF ++ D G +P++ TY ++I G C  +RL E V LF+ +    L P+
Sbjct: 536 FVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPD 595

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T LI  +CK   M  A  +F  M + G  A+   Y+CLI G+ K   M  A  + E
Sbjct: 596 RILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLME 655

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLL 157
           EM    ++P++             G   +A   Y+SML+ GI PD  L
Sbjct: 656 EMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPDAKL 703



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  AL +F  + D G+ P+++T   ++ G+     +DEA     K+    + PN   + 
Sbjct: 436 NLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYR 495

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++I+  CK  + D    +F+ M+++G   + V YS +ID + K+  +  AF ++ +M + 
Sbjct: 496 VIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDE 555

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              PN+              R  E + L+  M+  G+ PD +L ++L
Sbjct: 556 GTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSL 602



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ A +LF +L ++G + D I Y+ I+ G C    ++    L+  +      P+
Sbjct: 361 LCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPD 420

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +T LI AFC+   + DA  +F  ML+ G   NVVT + L+DG+ K + +  AF    
Sbjct: 421 AYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLH 480

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ +  I PN+              +      ++  M++ G +PD ++ S + D
Sbjct: 481 KVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIID 534



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 14/168 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITF 65
           +L  A +L  ++  +G++P+  TY T + G     ++  A   F ++ C +  P N+  F
Sbjct: 226 YLAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVASAWN-FLQMLCQRGNPCNTYCF 284

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +I  FC+EG++ +A  +F  M + G   +  +YS L+DG  K  ++ + +D+  EM  
Sbjct: 285 NAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMAR 344

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N I+P +            AG+   A +L+  +   G   D ++ S +
Sbjct: 345 NGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSII 392



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A+++F  +   GL PD  +Y+ ++ G C    +     L  ++    + P  +
Sbjct: 293 REGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLV 352

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++ L+   C+ G+++ A  +F ++ E+G K + + YS +++G  +  N++   D++ +M
Sbjct: 353 SYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDM 412

Query: 124 CENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +N  P+                 T+A+ +++ ML +G+ P+ +  + L D
Sbjct: 413 VHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVD 464



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +     L  ++   G+ P +++Y++++ G C   +++ A +LF +L     K +
Sbjct: 326 LCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHD 385

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I ++I+++  C+   ++    +++ M+      +   Y+ LI  + + +N+  A  V+E
Sbjct: 386 HIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFE 445

Query: 122 EMCENNISPNIA 133
            M ++ +SPN+ 
Sbjct: 446 LMLDSGVSPNVV 457



 Score = 38.5 bits (88), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 51/184 (27%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            Y TII  +  L+  ++A+  + +   V ++     F  L+    +  ++  A  +F  M
Sbjct: 143 VYATIIRIFVELSMFEDALLTYTEAKKVGVELQLCNF--LLKCLVERNQIIYARSLFDDM 200

Query: 89  LEKGPKANVVTYSCLIDGYFKSQN--MKSAFDVYEEMCENNISPNIA------------- 133
              GP  NV +YS L+  Y       +  AF++  EM    + PN A             
Sbjct: 201 KSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTR 260

Query: 134 ----------------------------------GRPTEAMQLYDSMLRNGIMPDGLLLS 159
                                             G+  EA++++D+M + G++PD    S
Sbjct: 261 QVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYS 320

Query: 160 TLAD 163
            L D
Sbjct: 321 ILVD 324


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   L  A +L+ ++ D G +P+I TY ++I G C  ++L E + LF+ +    L P+
Sbjct: 538 FVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPD 597

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T LI  +CK   M  A  +F +M  +G  A+   Y+CLI G+ K   M  A    E
Sbjct: 598 RILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFME 657

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLL 157
           EM    ++P +             G   +AM +Y+SML+ GI PD  L
Sbjct: 658 EMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPDAKL 705



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  AL++F  +   G+ P+++T   ++ G+ +   + EA    +K+    + PN  T+ 
Sbjct: 438 QLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYR 497

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++I+  CK  + +D   +F+ M+++G   + V YS +IDG+ K+ +++ AF +Y +M + 
Sbjct: 498 VIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDE 557

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
              PNI    +            E M L+  M+  G+ PD +L ++L
Sbjct: 558 GTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSL 604



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ A +LF +L D+G + D I Y+ ++ G C    L+    L+  +      P+
Sbjct: 363 LCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPD 422

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  ++ LI A+C+  ++ +A  +F  M+  G   NVVT + L+ G+     +  AF   +
Sbjct: 423 AYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLD 482

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           ++ +  + PN+              +P +   ++  M++ G +PD +L S + D  +++ 
Sbjct: 483 KVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKAL 542

Query: 170 GSQE 173
             QE
Sbjct: 543 DLQE 546



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFT 66
           L+ A +L  ++   G+ P+  TY T + G C   ++  A   F ++ C +  P NS  F 
Sbjct: 229 LEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWN-FLQMLCQRGYPCNSYCFN 287

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  FC +G++  A  +F  M + G   +V +YS L+DG  K  ++ + + +  EM  N
Sbjct: 288 AVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARN 347

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I+PN+            AGR   A +L+  +   G   D ++ S +
Sbjct: 348 GITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIV 394



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 75/150 (50%), Gaps = 12/150 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++   G+ P++++Y++++ G C   R++ A +LF++L     K + I ++I++   C+  
Sbjct: 343 EMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHL 402

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133
            ++    +++ M+      +   YS LI  Y + + +K A +V+E M  + I PN+    
Sbjct: 403 DLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCT 462

Query: 134 ---------GRPTEAMQLYDSMLRNGIMPD 154
                    G   EA    D + + G++P+
Sbjct: 463 ILVHGFSNEGLIGEAFLFLDKVRQFGVVPN 492



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 84/164 (51%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+++F  +   G  PD+ +Y+ ++ G C    +     +  ++    + PN 
Sbjct: 294 CHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNL 353

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++++ L+   C+ GR++ A  +F ++ ++G K + + YS ++ G  +  +++  +D++ +
Sbjct: 354 VSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWND 413

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           M  +N  P+     +            EA+++++ M+ +GI P+
Sbjct: 414 MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPN 457



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 64/122 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   + +A      L  RG   +   +N +I G+C   ++ +AV++F+ +      P+
Sbjct: 258 LCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPD 317

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +++IL+D  CK+G +     M  +M   G   N+V+YS L+ G  ++  ++ AF++++
Sbjct: 318 VHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFK 377

Query: 122 EM 123
            +
Sbjct: 378 RL 379



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 31  NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM--DDATMMFSKM 88
           N ++ G    N++     LF+ +      PN  ++++L+  +    ++  ++A  + S+M
Sbjct: 180 NFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEM 239

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
             +G + N  TY   + G  +++ +KSA++  + +C+     N              G+ 
Sbjct: 240 EVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQV 299

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +A++++D M + G +PD    S L D
Sbjct: 300 HKAVEVFDGMKKCGFVPDVHSYSILVD 326


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 96/182 (52%), Gaps = 15/182 (8%)

Query: 7   HLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            +D A +L   + ++   +PDI+ +N II G+C   R+ EA ++ E L  +   PN++T+
Sbjct: 154 RVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTY 213

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T LID FCK G + +A  +F  +  +   A  NVVT++ LI G  K+  ++ AF++ ++M
Sbjct: 214 TTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQM 273

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
              ++  +              GR +E  ++++ MLR G  P  +  +TL   + ++   
Sbjct: 274 KARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSL 333

Query: 172 QE 173
           Q+
Sbjct: 334 QD 335



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 14/172 (8%)

Query: 4   KECHLDAALKLFGQLTDR--GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           K  +L  AL+LF  L+ R    EP+++T+N +I G C  +RL+ A +L +++    L+ +
Sbjct: 222 KSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRAD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T L+D  CK+GR  + + +F +ML +G   +VVTY+ L+  + K+ +++ A  V  
Sbjct: 282 TFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIR 341

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    I P++             G+   A + ++ +LR    P  ++ S L
Sbjct: 342 SMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSAL 393



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A +L  Q+  R L  D  TY T++ G C   R  E  ++FE++      P+
Sbjct: 257 LCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPS 316

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L+ A CK G + DA  +   M+ KG   +V TY+ L++G F++  +++A + +E
Sbjct: 317 VVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFE 376

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++      P              A    EA++ Y  ML   + PD
Sbjct: 377 KILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPD 421



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 49/205 (23%)

Query: 8   LDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---------- 56
           LD AL+LF ++     L P+  TY  II  YC ++RLD+A QL E+ +C           
Sbjct: 86  LDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSV 145

Query: 57  --------------QL----------KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                         QL          KP+ + + ++I  FCK GR+ +A  M   ++  G
Sbjct: 146 ARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMG 205

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--ENNISPNI------------AGRPTE 138
              N VTY+ LIDG+ KS N+  A  +++ +   +++  PN+            A R   
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEH 265

Query: 139 AMQLYDSMLRNGIMPDGLLLSTLAD 163
           A +L   M    +  D    +TL D
Sbjct: 266 AFELVKQMKARDLRADTFTYTTLMD 290



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 65/132 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+       ++F ++   G  P ++TY T++  +C    L +A Q+   +    + P+
Sbjct: 292 LCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPD 351

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T+L++   + G++  AT  F K+L +      V YS L+ G  K+  +  A   Y 
Sbjct: 352 VTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYV 411

Query: 122 EMCENNISPNIA 133
           EM +  ++P+ A
Sbjct: 412 EMLDRRLAPDPA 423



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+  T++ +I G C   RL EAV+ + ++      PN     +L+ + C+ G MD A  +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           F + ++  P  +V+T + LI+G+ + Q +  A +++ EM +N
Sbjct: 61  F-RGIQCSP--SVITLNILINGFCELQLLDKALELFHEMEKN 99



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 49/98 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++   +  +G+ PD+ TY  ++ G     ++  A + FEK+   +  P ++ ++ 
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSA 392

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           L+   CK   +D+A   + +ML++    +  T   L++
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVE 430



 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F ++      P  + Y+ ++ G C    +DEAV+ + ++   +L P+  T  +L++
Sbjct: 371 ATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVE 430

Query: 71  AFCKEGRMD 79
             CK GR D
Sbjct: 431 MLCKRGRTD 439


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 76/130 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ +  ++   G+ PD ITYN+I+ GYCS  +  EA+ + EK+    ++P+
Sbjct: 251 LCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPD 310

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+T L+D  CK GR  +A  +   M+++G K NV+TYS L+ GY     +    D+ +
Sbjct: 311 AVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLD 370

Query: 122 EMCENNISPN 131
            M  N I P+
Sbjct: 371 LMVRNGIQPD 380



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   D A   + ++ +RG+ PD++TYNTI+   C    +D+A+ +  ++    + P+
Sbjct: 216 LFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  ++  +C  G+  +A  +  KM   G + + VTY+ L+D   K+     A  + +
Sbjct: 276 CITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILD 335

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + PN+             G   E   L D M+RNGI PD  + S L
Sbjct: 336 SMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSIL 387



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           L  E     AL+L   + D G +  PD+++Y+TII G       D+A   + ++    + 
Sbjct: 179 LCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGIL 238

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+ +T+  ++ A CK   MD A  + ++M++ G   + +TY+ ++ GY  S   K A  +
Sbjct: 239 PDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGI 298

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E+MC + + P+              GR  EA ++ DSM++ G+ P+ +  STL
Sbjct: 299 LEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTL 352



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 14/162 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFTILIDAFCK 74
           ++T+ G  P + +YN ++ G C  +R  EA++L   +        P+ ++++ +ID   K
Sbjct: 159 RMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFK 218

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
           EG  D A   + +MLE+G   +VVTY+ ++    K+Q M  A DV   M +N + P+   
Sbjct: 219 EGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCIT 278

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                     +G+  EA+ + + M  +G+ PD +  ++L DY
Sbjct: 279 YNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDY 320



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 15/182 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL-FEKLTCVQLKPNSITF 65
            LD      G +  +G   + I +  ++   C+  R   A+ +   ++T +   P+  ++
Sbjct: 113 RLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSY 172

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            IL+   C E R  +A  +   M + G     +VV+YS +IDG FK  +   A+  Y EM
Sbjct: 173 NILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEM 232

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  I P++    T            +AM + + M++NG+MPD +  +++      S  S
Sbjct: 233 LERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQS 292

Query: 172 QE 173
           +E
Sbjct: 293 KE 294



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+   +  RGL+P++ITY+T++ GY +   L E   L + +    ++P+   F+ILI 
Sbjct: 330 ARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILIC 389

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           A  K   +D A  +FSKM ++    +VVTY  LIDG  KS  +  A 
Sbjct: 390 ACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAM 436



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G++PD   ++ +IC       +D A+ +F K+   +L P+ +T+  LID  CK GR+DDA
Sbjct: 376 GIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435

Query: 82  TM 83
            +
Sbjct: 436 ML 437



 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE 51
           K  ++D A+ +F ++  + L PD++TY T+I G C   R+D+A+   E
Sbjct: 393 KHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAMLNLE 440


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 97/178 (54%), Gaps = 15/178 (8%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSIT 64
            + AAL +  ++ +RG + P+  TY T+I G+C + R+DEAV++F E LT  ++KP ++ 
Sbjct: 87  RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 146

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI  +C +G++D A +   +M+E+G    V TY+ L+   F       A+++ EEM 
Sbjct: 147 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 206

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
              ++P++             G   +A++++++M R G+    +  ++L  Y L   G
Sbjct: 207 GKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLI-YALSKKG 263



 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++  +GL PD+ TYN +I G+C    + +A+++FE ++   ++   +T+T LI 
Sbjct: 198 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 257

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K+G++ +   +F + + +G + ++V Y+ LI+ +  S N+  AF++  EM +  I+P
Sbjct: 258 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 317

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +            + GR  EA +L D M + GI PD +  +TL
Sbjct: 318 DDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTL 360



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 78/125 (62%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A ++ G++  + + PD +TYNT++ G C L R+DEA +L +++T   ++P+ +T+ 
Sbjct: 299 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 358

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  +  +G + DA  + ++M+ KG    ++TY+ LI G  K+     A ++ +EM EN
Sbjct: 359 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 418

Query: 127 NISPN 131
            I+P+
Sbjct: 419 GITPD 423



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +    KLF +   RG+ PD++ YN +I  + +   +D A ++  ++   ++ P+
Sbjct: 259 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 318

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+   C  GR+D+A  +  +M ++G + ++VTY+ LI GY    ++K A  +  
Sbjct: 319 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRN 378

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM     +P +             G+  +A  +   M+ NGI PD
Sbjct: 379 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 423



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 27/179 (15%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPNSITFTILI 69
           AL+L  Q+      P+ +TYNT+I G+CS  R+  A+ +  ++     + PN  T+  +I
Sbjct: 60  ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 115

Query: 70  DAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             +CK GR+D+A  +F +ML KG  K   V Y+ LI GY     + +A    + M E  +
Sbjct: 116 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 175

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           +  +A            GR TEA +L + M   G+ PD      +  YN+  +G   HC
Sbjct: 176 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD------VFTYNILING---HC 225



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K   +D A+K+F ++  +G ++P+ + YN +I GYC   +LD A+   +++    +    
Sbjct: 120 KVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTV 179

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ +L+ A   +GR  +A  +  +M  KG   +V TY+ LI+G+ K  N+K A +++E 
Sbjct: 180 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFEN 239

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M    +   +             G+  E  +L+D  +R GI PD +L + L
Sbjct: 240 MSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 290



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A KL  ++T RG++PD++TYNT+I GY     + +A+++  ++      P  +T+ 
Sbjct: 334 RVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 393

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            LI   CK G+ DDA  M  +M+E G   +  TY  LI+G
Sbjct: 394 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 433



 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++ ++G  P ++TYN +I G C   + D+A  + +++    + P+  T+  LI+
Sbjct: 373 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 432

Query: 71  AFCKE 75
               E
Sbjct: 433 GLTTE 437


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A  L  ++   GL+PD ITY  +I  +C    L EA + F+ +    L P+
Sbjct: 528 LCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPS 587

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+T+ I A+C+ G +  A   F KMLE+G + N +TY+ LI    ++   + A+  + 
Sbjct: 588 AVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFH 647

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  + PN              G   +AM+ Y  M +NGI PD L    L
Sbjct: 648 EMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKAL 699



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   ++AA   F ++   GL+PD+ITYN+++ GYC    L EA+ LF  L    L P 
Sbjct: 353 LLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPT 412

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILID +C+ G +++A  +  +M+E+G   +V TY+ L+ G   + ++  A + ++
Sbjct: 413 VLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFD 472

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P+              G   +A +L + M+  GI  D +  + L D
Sbjct: 473 EMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILID 526



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 12/150 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ + G+ P ++TYN +I G     +++ A   F ++  + L+P+ IT+  L++ +CK G
Sbjct: 333 EMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAG 392

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
            + +A ++F  +   G    V+TY+ LIDGY +  +++ A  + EEM E    P++    
Sbjct: 393 SLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYT 452

Query: 133 --------AGRPTEAMQLYDSMLRNGIMPD 154
                   A     A + +D ML  G+ PD
Sbjct: 453 ILMKGSHNACSLAMAREFFDEMLSKGLQPD 482



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 47/215 (21%)

Query: 6   CHLDAALKLFGQLTDRGLEPDI-----------------------------------ITY 30
           C L  A + F ++  +GL+PD                                    +TY
Sbjct: 462 CSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTY 521

Query: 31  NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
           N +I G C    L++A  L  K+    L+P+ IT+T LI A C+ G + +A   F  M+ 
Sbjct: 522 NILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMIS 581

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTE 138
            G   + VTY+  I  Y +  N+ SA+  + +M E  + PN              GR   
Sbjct: 582 DGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQL 641

Query: 139 AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           A + +  ML  G++P+    + L D N +    ++
Sbjct: 642 AYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWED 676



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +  +L +A   F ++ + G+EP+ ITYN +I   C   R   A + F ++    L PN  
Sbjct: 600 RRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKY 659

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           T+T+LID  CKEG  +DA   + +M + G   + +T+  L  G F   +M  A +  E
Sbjct: 660 TYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKG-FDEGHMNHAIEYLE 716



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 83/200 (41%), Gaps = 47/200 (23%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  AL LFG L   GL P ++TYN +I GYC L  L+EA +L E++      P+  
Sbjct: 390 KAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVC 449

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPK----------------------------- 94
           T+TIL+        +  A   F +ML KG +                             
Sbjct: 450 TYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVM 509

Query: 95  ------ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
                 ++ VTY+ LIDG  K+ N+  A D+  +M  N + P+              G  
Sbjct: 510 MLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLL 569

Query: 137 TEAMQLYDSMLRNGIMPDGL 156
            EA + +  M+ +G+ P  +
Sbjct: 570 REARKFFKDMISDGLAPSAV 589



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 18/160 (11%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
            TYN +I G  +   + +A  L  ++    + P  +T+  +I    + G+++ A + F +
Sbjct: 309 FTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVE 368

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M   G + +V+TY+ L++GY K+ ++K A  ++ ++    ++P +             G 
Sbjct: 369 MRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
             EA +L + M+  G +PD      +  Y +   GS   C
Sbjct: 429 LEEARRLKEEMVEQGCLPD------VCTYTILMKGSHNAC 462



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 15/176 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
            +KE   D    L  ++  RG    P+ +T+N +I G      L+EA ++ E +   + K
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSK-K 305

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            +S T+  LI     +G +  A  +  +M  +G    VVTY+ +I G  +S  +++A   
Sbjct: 306 ASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVK 365

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + EM    + P++            AG   EA+ L+  +   G+ P  L  + L D
Sbjct: 366 FVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILID 421



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L  F ++   G+ PD+   N ++       R D+   +  ++  + ++P+ +T+  L+D+
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 72  FCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           F KEGR D   M+  +M  +G     N VT++ +I G  +  +++ A ++ E M
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGM 300



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 21/165 (12%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-----CVQLKPNSITFTIL 68
           +  ++   G+EP I+TYNT++  +    R D+   L +++      C+   PN +T  ++
Sbjct: 224 VHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCL---PNDVTHNVV 280

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    ++G +++A  M   M     KA+  TY+ LI G      +K A D+  EM    I
Sbjct: 281 ITGLARKGDLEEAAEMVEGM-RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGI 339

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P +            +G+   A   +  M   G+ PD +  ++L
Sbjct: 340 MPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSL 384


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A +L   LT +G+ PD+ T+N++I G C       A++LFE++     +P+
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LID+ C +G++D+A  M  +M   G   +V+TY+ LIDG+ K+  ++ A ++++
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFD 494

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  + +S N       I G     R  +A QL D M+  G  PD    ++L
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL +  Q+   G    +ITYNT+I G+C  N++ EA ++F+++    +  NS+T+  
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK  R++DA+ +  +M+ +G K +  TY+ L+  + +  ++K A D+ + M  N 
Sbjct: 511 LIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGI 151
             P+I            AGR   A +L  S+   GI
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+  A+++   +   G +PD+ TYN++I G C L  + EAV+  +++      PN
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPN 364

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  LI   CKE ++++AT +   +  KG   +V T++ LI G   ++N + A +++E
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424

Query: 122 EMCENNISPN 131
           EM      P+
Sbjct: 425 EMRSKGCEPD 434



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +L  Q+   G +PD  TYN+++  +C    + +A  + + +T    +P+
Sbjct: 515 LCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK GR++ A+ +   +  KG       Y+ +I G F+ +    A +++ 
Sbjct: 575 IVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFR 634

Query: 122 EMCENNISP--------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E N +               N  G   EA+     +L  G +P+   L  LA+
Sbjct: 635 EMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAE 690



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 13/152 (8%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
            +++  G++PD+ T+N +I   C  ++L  A+ + E +    L P+  TFT ++  + +E
Sbjct: 178 AKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEE 237

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-ENNISPN--- 131
           G +D A  +  +M+E G   + V+ + ++ G+ K   ++ A +  +EM  ++   P+   
Sbjct: 238 GDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297

Query: 132 ---------IAGRPTEAMQLYDSMLRNGIMPD 154
                     AG    A+++ D ML+ G  PD
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A+ +   +   GL PD  T+ TI+ GY     LD A+++ E++       +
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWS 258

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +++  +++  FCKEGR++DA     +M  + G   +  T++ L++G  K+ ++K A ++ 
Sbjct: 259 NVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIM 318

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M +    P++             G   EA++  D M+     P+ +  +TL
Sbjct: 319 DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTL 371



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           KE  ++ AL    +++++ G  PD  T+NT++ G C    +  A+++ + +      P+ 
Sbjct: 271 KEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDV 330

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  +I   CK G + +A     +M+ +    N VTY+ LI    K   ++ A ++   
Sbjct: 331 YTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARV 390

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +    I P++                  AM+L++ M   G  PD    + L D
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID 443



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 14/172 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D GL+PD   YN ++      N L        K++   +KP+  TF +LI A C+  +
Sbjct: 145 IDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI 132
           +  A +M   M   G   +  T++ ++ GY +  ++  A  + E+M E     +N+S N+
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264

Query: 133 -------AGRPTEAMQLYDSML-RNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                   GR  +A+     M  ++G  PD    +TL +  L  +G  +H I
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN-GLCKAGHVKHAI 315


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A K+F ++   G+ P+++TY TI+ GY S   +  A ++F +L      P+
Sbjct: 202 LCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPD 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+TIL+D + K+GR  DA  +  +M E G + N +TY  +I GY K +    A ++  
Sbjct: 262 ATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLN 321

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M E    PN A            GR  EA ++++ +L+    PD  + STL  +
Sbjct: 322 DMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHW 376



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+     A+K+  ++ + G+EP+ ITY  II GYC   +  EA+ L   +   +  PNS
Sbjct: 273 VKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNS 332

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
                +ID  C EGR+ +A  M+ K+L+K    +    S LI    K  N+  A  ++ E
Sbjct: 333 ALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNE 392

Query: 123 MCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
                IS  +            G   EA +L+D ML  G +P+    + L    L+   +
Sbjct: 393 FERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKA 452

Query: 172 QE 173
           +E
Sbjct: 453 KE 454



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ P++ T N +I   C  N ++ A ++F+++  + + PN +T+T ++  +   G M  A
Sbjct: 187 GVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGA 246

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG 134
             +F ++ + G   +  TY+ L+DGY K      A  V +EM EN + PN       I G
Sbjct: 247 KRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILG 306

Query: 135 -----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
                +  EA+ L + ML    +P+  L   + D        +E C
Sbjct: 307 YCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEAC 352



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 13/157 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE-KLTCVQLKPNSITFTILI 69
           ALK F ++   G+   + + NT++      NR      LF+   +   + PN  T  ILI
Sbjct: 140 ALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILI 199

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A CK+  ++ A  +F +M   G   NVVTY+ ++ GY    +M  A  V+ E+ ++   
Sbjct: 200 KALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWL 259

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           P+              GR T+A+++ D M  NG+ P+
Sbjct: 260 PDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPN 296



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L KE ++  A KLF +  +RG    ++TYNT+I G C +  L EA +L++ +      P
Sbjct: 376 WLCKEGNIWEARKLFNEF-ERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVP 434

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           N  T+ +LI  F K G+  +   +  +ML+KG   N  TY  L++G  K
Sbjct: 435 NEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLK 483



 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 43/82 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L+  + ++G  P+  TYN +I G+  + +  E +++ E++       N  T+ IL++
Sbjct: 420 AARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVE 479

Query: 71  AFCKEGRMDDATMMFSKMLEKG 92
              K G+ ++   + S ++  G
Sbjct: 480 GLLKLGKREELLNILSMIISSG 501


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 100/188 (53%), Gaps = 14/188 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD AL LF ++T +G  P+++TY T+I G C+ +++D A  L +++T     P+
Sbjct: 229 LCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPD 288

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++  L+D +C+ GR+++A  +F +M  K    + +TY+CL+ G+  +  ++ A  + E
Sbjct: 289 TVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLE 348

Query: 122 EM-CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            M     I P++            A R  EA +    M+   + P+ +  S+L D  L  
Sbjct: 349 NMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLID-GLCK 407

Query: 169 SGSQEHCI 176
           +G  +H +
Sbjct: 408 AGRVDHAM 415



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKP 60
           L ++  +D A ++  ++  +G+EPD  T++ +I G+C+  ++DEA++L+ E LT    KP
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T LID FCK G ++ A  M   M  +    NVVTYS L+ G  K+ ++  A D++
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 242

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             M      PN+            A +   A  L D M      PD +  + L D
Sbjct: 243 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD 297



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%)

Query: 8   LDAALKLFGQ-LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +D ALKL+ + LT    +PD++TY  +I G+C    L++A+++   +   +  PN +T++
Sbjct: 164 VDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYS 223

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+   CK G +D A  +F +M  KG   NVVTY+ LI G   +  + +A  + +EM   
Sbjct: 224 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT 283

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              P+              GR  EA QL+  M     +PD +  + L
Sbjct: 284 CCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCL 330



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 91/172 (52%), Gaps = 14/172 (8%)

Query: 4   KECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K+  +D A ++  ++  R G+ PD++TY +++ G C   ++D A ++  ++    ++P+ 
Sbjct: 89  KQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDK 148

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            TF+ LI  +C   ++D+A  ++ ++L     K +VVTY+ LIDG+ KS N++ A  +  
Sbjct: 149 FTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLG 208

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      PN+            AG   +A+ L+  M   G +P+ +  +TL
Sbjct: 209 VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTL 260



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 72/128 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A+K+ G +  R   P+++TY++++ G C    LD+A+ LF ++T     PN +
Sbjct: 196 KSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVV 255

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI   C   ++D A ++  +M       + V+Y+ L+DGY +   ++ A  +++EM
Sbjct: 256 TYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEM 315

Query: 124 CENNISPN 131
              +  P+
Sbjct: 316 ATKSCLPD 323



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 19  TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78
           T  G++PD++TY+ ++ GY    R  EA +  +++    + PN++T++ LID  CK GR+
Sbjct: 352 TAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRV 411

Query: 79  DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTE 138
           D A  +   M+ K  + +V T++ +I    +  +M  A+ +   M  + + P +    T 
Sbjct: 412 DHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTT- 470

Query: 139 AMQLYDSMLRNGIM 152
              L +   R G M
Sbjct: 471 ---LLEGFSRTGRM 481



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 68/113 (60%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +   ++  R + P+ +TY+++I G C   R+D A+++ + +   +++P+  TF  +I 
Sbjct: 379 AAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIG 438

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           A C+ G MD+A  +   M   G +  +VTY+ L++G+ ++  M+ A++++E M
Sbjct: 439 ALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 491



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 19/169 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   + ++ +EP + T+N++I   C L  +DEA +L   +    L+P 
Sbjct: 405 LCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPG 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM----LEKGPKANVV---TYSCLIDGYFKSQNMK 114
            +T+T L++ F + GRM+ A  +F  M     +    AN+V    +S LI G  K++ + 
Sbjct: 465 MVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREID 524

Query: 115 SAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGI 151
            A  V EE+      P              AGR  EA +L +S+ + G+
Sbjct: 525 KAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 15/152 (9%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P ++T+  II G+C  N+L +A+  FEK+    + PN  T+ ++++  CK      A  
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 84  MFSKMLE-KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-ENNISPNIA-------- 133
           +  +M + K    ++VTYS +I+G+ K   M  A ++  EM   + I+P++         
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G+   A ++   M   G+ PD    S L
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSAL 154



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 15/122 (12%)

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           ++ +P  +T+TI+ID FCK  ++  A   F KM E     N  TY+ +++G  K++    
Sbjct: 1   MECQPTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSK 59

Query: 116 AFDVYEEMCE-NNISPNIA------------GRPTEAMQLYDSML-RNGIMPDGLLLSTL 161
           A++V +EM +  +++P++             G    A ++   M+ R+GI PD +  +++
Sbjct: 60  AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSV 119

Query: 162 AD 163
            D
Sbjct: 120 VD 121


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSIT 64
            + AAL +  ++ +RG + P+  TY T+I G+C + R+DEAV++F E LT  ++KP ++ 
Sbjct: 160 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 219

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI  +C +G++D A +   +M+E+G    V TY+ L+   F       A+++ EEM 
Sbjct: 220 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 279

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
              ++P++             G   +A++++++M R G+
Sbjct: 280 GKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 318



 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 91/163 (55%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++  +GL PD+ TYN +I G+C    + +A+++FE ++   ++   +T+T LI 
Sbjct: 271 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 330

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K+G++ +   +F + + +G + ++V Y+ LI+ +  S N+  AF++  EM +  I+P
Sbjct: 331 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 390

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +            + GR  EA +L D M   GI PD +  +TL
Sbjct: 391 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 433



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +    KLF +   RG+ PD++ YN +I  + +   +D A ++  ++   ++ P+
Sbjct: 332 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 391

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+   C  GR+D+A  +  +M E+G + ++VTY+ LI GY    ++K A  +  
Sbjct: 392 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 451

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM     +P +             G+  +A  +   M+ NGI PD
Sbjct: 452 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 496



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 18/158 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPNSITFTILI 69
           AL+L  Q+      P+ +TYNT+I G+CS  R+  A+ +  ++     + PN  T+  +I
Sbjct: 133 ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 188

Query: 70  DAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             +CK GR+D+A  +F +ML KG  K   V Y+ LI GY     + +A    + M E  +
Sbjct: 189 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 248

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +  +A            GR TEA +L + M   G+ PD
Sbjct: 249 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 286



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K   +D A+K+F ++  +G ++P+ + YN +I GYC   +LD A+   +++    +    
Sbjct: 193 KVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTV 252

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ +L+ A   +GR  +A  +  +M  KG   +V TY+ LI+G+ K  N+K A +++E 
Sbjct: 253 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFEN 312

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M    +   +             G+  E  +L+D  +R GI PD +L + L
Sbjct: 313 MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 363



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A KL  ++T+RG++PD++TYNT+I GY     + +A+++  ++      P  +T+ 
Sbjct: 407 RVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 466

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            LI   CK G+ DDA  M  +M+E G   +  TY  LI+G
Sbjct: 467 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 506



 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++ ++G  P ++TYN +I G C   + D+A  + +++    + P+  T+  LI+
Sbjct: 446 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 505

Query: 71  AFCKE 75
               E
Sbjct: 506 GLTTE 510


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A   F ++   G  PDI+TY T+I G C + RLD+A+  F ++    L PN ITFT
Sbjct: 311 RLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFT 370

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F   G+ + A  +F +M+++G   +V  ++ +ID  FK   +  A  +++ M   
Sbjct: 371 TLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRA 430

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN            IAG   E M+L D ML  G+ P  +  +TL D
Sbjct: 431 GAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLD 479



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  +  Q+ D  + P+  TYN++I GY S  +  EAV++ ++++    +PN +T+ +
Sbjct: 172 MDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNM 231

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G   +A  +F+ M++ GPK +  TY  L+ GY    N+    +V + M +N 
Sbjct: 232 LIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNG 291

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  N              GR  EA   +  M + G MPD +  +T+ D
Sbjct: 292 MRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVID 339



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +   G+  +  T++  I  YC   RLDEA   F K+  +   P+ +T+T +ID  CK GR
Sbjct: 287 MVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGR 346

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           +DDA   F +M++ G   N++T++ LI G+      + A +++ EM +  I P++     
Sbjct: 347 LDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTA 406

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   G+ TEA +L+D M R G  P+ +  +T+
Sbjct: 407 MIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTM 442



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +   G +PD  TY +++ GY +   L E   + + +    ++ N  TF+I I 
Sbjct: 245 AREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIY 304

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+CK GR+D+A++ F KM + G   ++VTY+ +IDG  K   +  A   + +M ++ +SP
Sbjct: 305 AYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSP 364

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           NI             G+  +A +L+  M+  GI PD  + + + D
Sbjct: 365 NIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMID 409



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 14/169 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFT 66
           DA   +  ++ + G  PD+ +Y+T++ G C+  + +EA +L   +        P+ ++++
Sbjct: 66  DAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYS 125

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  F KEG +  A  +F KML+ G   NVVT + +IDG  K Q M  A  V ++M + 
Sbjct: 126 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE 185

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I PN             +G+ TEA+++   M R+G  P+ +  + L D
Sbjct: 186 HIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLID 234



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD+++Y+T+I G+     + +A  LF K+    + PN +T   +ID  CK   MD A  +
Sbjct: 119 PDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 178

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             +M+++    N  TY+ LI GY  S     A  + +EM  +   PN+            
Sbjct: 179 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCK 238

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +G   EA ++++SM+++G  PD     +L
Sbjct: 239 SGFHAEAREIFNSMIQSGPKPDATTYGSL 267



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  +  A  LF ++ D G+ P+++T N++I G C +  +D+A  + +++    + PN
Sbjct: 131 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPN 190

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI  +   G+  +A  +  +M   G + NVVTY+ LID   KS     A +++ 
Sbjct: 191 CTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFN 250

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
            M ++   P+              G   E   + D M++NG+
Sbjct: 251 SMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGM 292



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 19/117 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A KLF  +   G +P++++YNT+I GY     + E ++L + +  + LKP 
Sbjct: 411 LFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPT 470

Query: 62  SITFTIL-------------------IDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           ++TF  L                   ID+ C++GR++D   +F +ML K  K + +T
Sbjct: 471 AVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTIT 527


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 14/158 (8%)

Query: 11  ALKLFGQLTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL LF  +   G    P+++ YNT+I G+       +A  LF ++T   +KP+ +T+ ++
Sbjct: 247 ALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLI 306

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           IDA CK   MD A ++  +M   G + + VTY+C+I GY     +K A  ++ +M    +
Sbjct: 307 IDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGL 366

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            PNI             GR  EA +++DSM   G  PD
Sbjct: 367 IPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPD 404



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +  Q+T  G +PD +TYN +I GY +L RL EA ++F K+    L PN
Sbjct: 310 LCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPN 369

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +     + + CK GR  +A  +F  M  KG K ++V+Y  L+ GY           ++ 
Sbjct: 370 IVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFN 429

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I+      NI        G   +AM ++  M + G+ PD +  ST+
Sbjct: 430 SMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTV 481



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 13/156 (8%)

Query: 8   LDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           L  A +L  ++ ++G+  PDI+ +N++I   C   R+ +A  +F+ +T +  +P+ ITFT
Sbjct: 526 LVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFT 585

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +C  G+MD A  +   M   G + ++VTYS L+DGYFK+  +     ++ EM   
Sbjct: 586 SLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRK 645

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNG 150
            + PN             AGR   A + +  M+ +G
Sbjct: 646 GVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 78/132 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  +F  +TD G  PD+IT+ ++I GYC + ++D+A ++ + +  V ++ +
Sbjct: 556 LCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETD 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ L+D + K GR++D   +F +M  KG K N VTY  ++ G F++    +A   + 
Sbjct: 616 IVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFH 675

Query: 122 EMCENNISPNIA 133
           EM E+  +  ++
Sbjct: 676 EMIESGTTVTVS 687



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A ++F  +T +G +PDI++Y T++ GY S     + + LF  +    +  +
Sbjct: 380 LCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAAD 439

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F ILI A+ K G +DDA ++F++M ++G   +VVTYS +I  + +   +  A + + 
Sbjct: 440 CRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFN 499

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
           +M    I PN A        +Y S+++   M  GL+
Sbjct: 500 QMVARGIQPNTA--------VYHSIIQGFCMHGGLV 527



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 92/173 (53%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+ +F ++  +G+ PD++TY+T+I  +  + RL +A++ F ++    ++PN+ 
Sbjct: 452 KRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTA 511

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            +  +I  FC  G +  A  + S+M+ KG P+ ++V ++ +I+   K   +  A D+++ 
Sbjct: 512 VYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDL 571

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + +    P++             G+  +A ++ D+M   G+  D +  STL D
Sbjct: 572 VTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLD 624



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE     A  LF ++T +G++PD++TYN II   C    +D+A  +  ++T    +P+
Sbjct: 275 FFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  +I  +   GR+ +A  MF KM  +G   N+V  +  +    K    K A ++++
Sbjct: 335 TVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFD 394

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M      P+I             G   + + L++SM  NGI  D
Sbjct: 395 SMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAAD 439



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+   +   G+E DI+TY+T++ GY    R+++ + LF ++    +KPN++T+ I
Sbjct: 597 MDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    + GR   A   F +M+E G    V  Y  ++ G  ++     A  +++++   N
Sbjct: 657 MLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMN 716

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +  +I              R  EA +L+ ++  +G++P+
Sbjct: 717 VKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPN 755



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           + LF  +   G+  D   +N +I  Y     +D+A+ +F ++    + P+ +T++ +I A
Sbjct: 425 IGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISA 484

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SP 130
           F + GR+ DA   F++M+ +G + N   Y  +I G+     +  A ++  EM    I  P
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I             GR  +A  ++D +   G  PD +  ++L D
Sbjct: 545 DIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLID 589



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 50/196 (25%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCV-------- 56
           D  L LFG +   GL+   IT +T++   C  NR +EAV +      +L CV        
Sbjct: 174 DLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSI 233

Query: 57  --------------------------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
                                        PN + +  +I  F KEG    A  +F +M  
Sbjct: 234 ILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTR 293

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTE 138
           +G K +VVTY+ +ID   K++ M  A  V  +M  N   P+              GR  E
Sbjct: 294 QGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKE 353

Query: 139 AMQLYDSMLRNGIMPD 154
           A +++  M   G++P+
Sbjct: 354 AAKMFRKMKSRGLIPN 369



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA K F ++ + G    +  Y  I+ G C  N  DEA+ LF+KL  + +K +      +I
Sbjct: 669 AARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMI 728

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           +A  K  R ++A  +F+ +   G   N  TY  +I    K   ++ A +++  M ++ I 
Sbjct: 729 NAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIV 788

Query: 130 PN 131
           P 
Sbjct: 789 PG 790



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF +L    ++  I   NT+I     + R +EA +LF  ++   L PN  T+ ++
Sbjct: 703 DEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVM 762

Query: 69  IDAFCKEGRMDDATMMFSKMLEKG 92
           I    K+G ++DA  MFS M + G
Sbjct: 763 IINLLKDGAVEDANNMFSSMEKSG 786


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 18/176 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A++LF  + +RG++ D+I+YNT+I GYC+  + +EA+ LF K+   +L P+  T+T
Sbjct: 234 QMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYT 293

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+ A  + GR+  A  +F+ M   G   ++ TY+ L+DG  K+  ++ A DV+  +   
Sbjct: 294 ILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSI 353

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
              P+I            A R   AM+++D +   G++P+      +  YN+  +G
Sbjct: 354 KYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPN------IVTYNIMING 403



 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            LK+F ++ + G+ P++I Y+++I G C + +L EAV LF+++    +K N IT+  LI 
Sbjct: 98  GLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIH 157

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C+ G   +AT  FS+M+ +G   +VVT++ LID   K   ++ A+ ++E M +   +P
Sbjct: 158 ASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAP 217

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           NI    +             A++L++ M+  GI  D +  +TL +    S  ++E
Sbjct: 218 NIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEE 272



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ LF ++  +G++ ++ITYN++I   C      EA + F ++    + P+ +TFT 
Sbjct: 130 LREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTT 189

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID   K+G++ +A  +F  M+++G   N+VTY+ L++G      M  A  ++E M E  
Sbjct: 190 LIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERG 249

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           I  ++            +G+  EAM L+  M    + P 
Sbjct: 250 IKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPS 288



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+LF ++T  G + DI+ Y  +I       +   AV+L  ++       N  T+ ++ID
Sbjct: 28  ALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVID 87

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK+G       MF +M+  G   NV+ YS LI+G  +   ++ A ++++EM    I  
Sbjct: 88  SLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKA 147

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           N+             G   EA + +  M+  GI+PD +  +TL D+  +    QE
Sbjct: 148 NVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQE 202



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 12/148 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F Q+   G+ PD++T+ T+I       ++ EA ++FE +      PN +T+  L++
Sbjct: 168 ATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLN 227

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   +MD A  +F  M+E+G K +V++Y+ LI+GY  S   + A  ++ +M    ++P
Sbjct: 228 GLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTP 287

Query: 131 NIA------------GRPTEAMQLYDSM 146
           +I             GR   A +L+++M
Sbjct: 288 SITTYTILLKALYQNGRIRTAKELFNNM 315



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 72/124 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ +F  L     +P I  Y+ +I G     R + A+++F+++  V L PN +T+ I
Sbjct: 340 IEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNI 399

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CKEG++ +A  +F +M E G + + ++++ +I G+ +   ++ A +  + M E N
Sbjct: 400 MINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKN 459

Query: 128 ISPN 131
            SPN
Sbjct: 460 FSPN 463



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 86/155 (55%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A K+F  +  +G  P+I+TYN+++ G C  +++D AV+LFE +    +K +
Sbjct: 194 LSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKID 253

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++  LI+ +C  G+ ++A  +F KM  +    ++ TY+ L+   +++  +++A +++ 
Sbjct: 254 VISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFN 313

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
            M     SP++         L D + +NG + + +
Sbjct: 314 NMQICGQSPSLDTYTV----LLDGLCKNGCIEEAI 344



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             ++A+++F ++   GL P+I+TYN +I G C   +L EA +LF ++     + + I+F 
Sbjct: 374 RWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFN 433

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
            +I  F +E ++  A     +M EK    N
Sbjct: 434 FIIRGFLQENQVQKAMEFLKRMREKNFSPN 463


>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
          Length = 845

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           ML+  CH   +  A  L G +   G+ PD+ +YN +I G+C      +A ++FE +    
Sbjct: 224 MLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFKMFEGMHRSG 283

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
            +P  +T+ IL+D  C EGRM +A  +F +M + G + N +T++ LIDGY KS  M  A 
Sbjct: 284 CEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQAS 343

Query: 118 DVYEEMCENNISPN 131
             Y EM    + P+
Sbjct: 344 AAYREMQARGLVPD 357



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 3/130 (2%)

Query: 6   CHLD---AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C LD    A + F ++T RG+ P+ ITYN+II   C    + EA++L + +    L P+ 
Sbjct: 540 CRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDI 599

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  ILID  C+EG++     +   M   G   + VTY+ +I+ Y ++Q+M SA +   +
Sbjct: 600 YTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNK 659

Query: 123 MCENNISPNI 132
           M      P+I
Sbjct: 660 MLVAGCEPDI 669



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            ALK +  + + GL+ D I ++  I G C L+ ++EA Q F ++T   + PN+IT+  +I
Sbjct: 512 GALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSII 571

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A CK G M +A  +   M + G   ++ T + LIDG  +   +K   ++  +MC N ++
Sbjct: 572 SALCKAGNMTEALKLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLT 631

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           P+     T             AM   + ML  G  PD
Sbjct: 632 PDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPD 668



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 21/167 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT----CVQLK 59
           KE   + A +L+  +   GL P   T+N +I G C+  RLDEA  L E +     C+   
Sbjct: 437 KEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCL--- 493

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
             S +FTI +DA+ ++G    A   +  M   G + + + +S  I+G  +   +  A+  
Sbjct: 494 --STSFTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAYQA 551

Query: 120 YEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           + EM    I PN             AG  TEA++L  +M ++G++PD
Sbjct: 552 FAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPD 598



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 56/93 (60%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +   G EP ++TYN ++   C   R+ EA +LF+++  V ++ N+ITF +LID
Sbjct: 272 AFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLID 331

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            + K G+MD A+  + +M  +G   +  T++ +
Sbjct: 332 GYAKSGQMDQASAAYREMQARGLVPDSCTFNII 364



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++  ALKL   +   GL PDI T N +I G C   +L     L   +    L P+
Sbjct: 574 LCKAGNMTEALKLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPD 633

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  +I+A+C+   M+ A    +KML  G + ++ TY+  +    ++  +  A  + +
Sbjct: 634 TVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLLD 693

Query: 122 EMCENNISPN 131
           E+   + SPN
Sbjct: 694 ELVAVDCSPN 703



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 1/128 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A+    ++   G EPDI TYN  +   C  + L++A +L ++L  V   PNS+T+  
Sbjct: 650 MNSAMNFMNKMLVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVDCSPNSVTYNT 709

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  C +  +D A ++  ++++   K N +T +  +  + K      A    E++ E++
Sbjct: 710 LMDGICSD-VLDRAMILTGRLIKMAFKPNTITLNVFLSHFCKQGFGNRALMWAEKLREDS 768

Query: 128 ISPNIAGR 135
              + A R
Sbjct: 769 FVFDGATR 776



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L     L   +   GL PD +TYNTII  YC    ++ A+    K+     +P+
Sbjct: 609 LCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPD 668

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             T+ I + + C+   ++ A  +  +++      N VTY+ L+DG
Sbjct: 669 IFTYNIWMHSLCRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDG 713



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 44/194 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L  E  +  A +LF ++   G++ + IT+N +I GY    ++D+A   + ++    L P
Sbjct: 297 VLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVP 356

Query: 61  NSITFTI--------------------------------LIDAFCKEGRMDDATMMFSKM 88
           +S TF I                                L+   C + R+DDA  +    
Sbjct: 357 DSCTFNIIAARAHKFGYAAQLVHDHDMFSSHMSADGLDMLVCRLCWDHRLDDAWELLLGA 416

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
           +E+G    V  ++ LI  Y K    + A ++Y  M +  ++P+ +            GR 
Sbjct: 417 IEQGVPLRVTGFNALIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRL 476

Query: 137 TEAMQLYDSMLRNG 150
            EA  L + M+  G
Sbjct: 477 DEAQLLLEHMVSKG 490



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 12/130 (9%)

Query: 46  AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           A  +FE++T    +P+  TF  ++  FC  G +  A+ +   M + G   +V +Y+ LI 
Sbjct: 202 AWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIK 261

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           G+      + AF ++E M  +   P +             GR  EA +L+D M + GI  
Sbjct: 262 GHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQV 321

Query: 154 DGLLLSTLAD 163
           + +  + L D
Sbjct: 322 NTITFNVLID 331



 Score = 35.8 bits (81), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/102 (19%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           + G +  A  +F +M  +GP+ ++ T++ ++ G+     ++ A  +   M ++ I+P++ 
Sbjct: 195 RSGEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVC 254

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       G   +A ++++ M R+G  P  +  + L D
Sbjct: 255 SYNILIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVD 296


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A  +  Q+ + G EPDI+ YN ++ GY    ++ +A  L  ++  V   PN+ 
Sbjct: 258 REGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAA 317

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +FTILI +FCK  +MD+A  +F++M   G +A+VVTY+ LI G+ K  N   A+++ ++M
Sbjct: 318 SFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDM 377

Query: 124 CENNISPN--------IAGRPTEA----MQLYDSMLRNGIMPD 154
            +    P+        +A    E     M+L + M + G +PD
Sbjct: 378 IQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPD 420



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+++  ++   G EPD   +  ++   C    + EA  LFE +  V+  PN   FT 
Sbjct: 193 VKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR-VRFNPNLRHFTS 251

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +C+EG++ +A  +  ++ E G + ++V Y+ L+ GY ++  M+ AFD+  EM + N
Sbjct: 252 LLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN 311

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             PN A             +  EAM+++  M  +G   D +  +TL
Sbjct: 312 CGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTL 357



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 66/125 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+++F ++   G E D++TY T+I G+C     D+A ++ + +      P+ +++  
Sbjct: 332 MDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLC 391

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++ A  K+  +++   +  +M + G   ++  Y+ +I    K  ++K A  ++ EM    
Sbjct: 392 IMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGG 451

Query: 128 ISPNI 132
           ++P +
Sbjct: 452 LNPGL 456



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+  ++L  ++   G  PD+  YNT+I   C L  L EAV+L+ ++    L P   
Sbjct: 398 KKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLD 457

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG--PKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           T+ +++  F  +G + +A   F +M+E+G        T   L +   +++ ++ A +++ 
Sbjct: 458 TYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWS 517

Query: 122 EM----CENNIS 129
            M    CE N+S
Sbjct: 518 CMTTKGCELNVS 529


>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Brachypodium distachyon]
          Length = 841

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H++ A + F ++T RG  P+ ITYN++I  +C +  + EA++L +K+    L P+  T  
Sbjct: 540 HVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSN 599

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILID FCKEGR+D     F  M   G   +VVTY+ +I+ Y  +Q+M SA     +M  +
Sbjct: 600 ILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLAD 659

Query: 127 NISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+I                  A+++ D ++  G MP+ +  +TL D
Sbjct: 660 GCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPNSVTYNTLMD 708



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  CH   +   L L G +    + PD  +YN +I GY    +  +A QL +++    
Sbjct: 216 MILGFCHRGLVHIGLGLLGVMWRFNVIPDACSYNILIKGYSVFGQAGDAFQLLDEMRESG 275

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
            +P  +T+ IL++  C +G M DA  +F +M++ G +AN +T++ L+DGY K+  M  A+
Sbjct: 276 CQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAY 335

Query: 118 DVYEEMCENNISPN 131
               EM    + P+
Sbjct: 336 AACREMKARGLVPD 349



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            +  +++ ALK +  +   G++PD I ++  I G C L+ ++EA Q F ++T     PN+
Sbjct: 501 FRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGFVPNN 560

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           IT+  LI AFC+ G + +A  +  KM + G   +V T + LIDG+ K   +      + +
Sbjct: 561 ITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSNILIDGFCKEGRLDMMNKRFLD 620

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           M  + ++P++    T             AM   + ML +G  PD
Sbjct: 621 MYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLADGCEPD 664



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +  LD A KL     ++G+   +  +N ++  Y      ++A++++  +  + L P+
Sbjct: 396 LCWDGRLDDAWKLVCSAIEQGVPVSVAGFNALVAAYSKEGFDEQALEVYSVMNKIGLVPS 455

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S TF  LI   C +GR+DDA ++   M+ KG      +++  +D YF+S N++ A   ++
Sbjct: 456 SPTFNYLIMGLCNQGRLDDAQLLLEHMICKGYCVG-TSFTIYMDSYFRSGNVEGALKCWD 514

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +  + P+       I+G        EA Q +  M   G +P+ +  ++L
Sbjct: 515 DMVKVGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGFVPNNITYNSL 566



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE   + AL+++  +   GL P   T+N +I G C+  RLD+A  L E + C      + 
Sbjct: 433 KEGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQLLLEHMICKGYCVGT- 491

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +FTI +D++ + G ++ A   +  M++ G + + + +S  I G  +  ++  A+  + EM
Sbjct: 492 SFTIYMDSYFRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEM 551

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 PN              G  +EA++L   M ++G++PD    + L D
Sbjct: 552 TGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSNILID 603



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD   K F  + + GL PD++TYNTII  YC    +  A+    K+     +P+  
Sbjct: 607 KEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLADGCEPDIF 666

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+ I + + C    ++ A  M  +++  G   N VTY+ L+DG
Sbjct: 667 TYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPNSVTYNTLMDG 709



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 58/99 (58%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G +P ++TYN ++   C    + +A +LF+++  V ++ N+ITF +L+D
Sbjct: 264 AFQLLDEMRESGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVGIEANTITFNVLVD 323

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            + K GRMD+A     +M  +G   +  T++ L  G +K
Sbjct: 324 GYAKAGRMDEAYAACREMKARGLVPDCCTFNILSAGAYK 362



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + +A+    ++   G EPDI TYN  +   C+ + L+ AV++ ++L  +   PNS+T+  
Sbjct: 646 MSSAMIFMNKMLADGCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPNSVTYNT 705

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  C +  +D A ++  K+++   + N VT +     + K    K A    E++ E++
Sbjct: 706 LMDGICSD-VLDRAMILTGKLIKMAFQPNTVTVNVFFSHFCKQGFGKRALVWAEKLKEDS 764

Query: 128 IS 129
           ++
Sbjct: 765 VA 766



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 36/157 (22%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL-- 68
           A +LF ++   G+E + IT+N ++ GY    R+DEA     ++    L P+  TF IL  
Sbjct: 299 ARRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAYAACREMKARGLVPDCCTFNILSA 358

Query: 69  ----------------------------------IDAFCKEGRMDDATMMFSKMLEKGPK 94
                                             +   C +GR+DDA  +    +E+G  
Sbjct: 359 GAYKFGKAVQLAHGQQELHEMFGSRISADSVDMVVCRLCWDGRLDDAWKLVCSAIEQGVP 418

Query: 95  ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            +V  ++ L+  Y K    + A +VY  M +  + P+
Sbjct: 419 VSVAGFNALVAAYSKEGFDEQALEVYSVMNKIGLVPS 455


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 1/145 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K C++  A+ LF +L  +G+ P+ ITYNT+I G+C      EA +L +K+    ++P 
Sbjct: 726 LCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPT 785

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILI   C +G M++A  +  +M+E     N +TY  LI GY +  NMK+   +Y 
Sbjct: 786 VFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKLYN 845

Query: 122 EMCENNISP-NIAGRPTEAMQLYDS 145
           EM    + P N  G   +A  + +S
Sbjct: 846 EMHICGLLPANWTGHVKQAEPVVNS 870



 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  L  ++    L P+I+TYN++I G C    +  AV LF KL    + PN+IT+  
Sbjct: 697 IDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNT 756

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK+G   +A  +  KM+++G +  V TY+ LI G      M+ A  + ++M ENN
Sbjct: 757 LIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENN 816

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           + PN              G      +LY+ M   G++P
Sbjct: 817 VDPNFITYWTLIQGYARCGNMKAITKLYNEMHICGLLP 854



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF  L  +G  PD  TY+++I G  +   +D A  L +++   +L PN +T+  LI 
Sbjct: 665 ARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIY 724

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   +  A  +F+K+  KG   N +TY+ LIDG+ K  N   AF + ++M +  I P
Sbjct: 725 GLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQP 784

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +             G   EA++L D M+ N + P+ +   TL
Sbjct: 785 TVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTL 827



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             K    + AL L+ +   RGL  +++T NT+I G C   R+ EA +LF ++       +
Sbjct: 420 FFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCD 479

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T+  LID +CK G +  AT +  +M   G   +V  ++  I G F ++      D+  
Sbjct: 480 SLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRV 539

Query: 122 EMCENNISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGLLLSTL 161
           EM    +SPN       IAG   E     A  LY  M+  G+ P+  + S L
Sbjct: 540 EMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVL 591



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 13/161 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           I +N +I G C L R+ +A  LFE L      P++ T++ LI      G +D A  +  +
Sbjct: 647 IMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDE 706

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           ML      N+VTY+ LI G  KS N+  A  ++ ++    ISPN              G 
Sbjct: 707 MLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGN 766

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            TEA +L   M++ GI P  +   T+  + L + G  E  I
Sbjct: 767 TTEAFKLKQKMIKEGIQPT-VFTYTILIHGLCTQGYMEEAI 806



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           RG+  D  +YNT++ GYC    + +A +  + +        ++T+  L++ FC  G +DD
Sbjct: 334 RGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDD 393

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------ 134
           A  ++  ML++G   N ++ S L+DG+FK+   + A ++++E     ++ N+        
Sbjct: 394 ALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVIN 453

Query: 135 ------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 R TEA +L+  M       D L   TL D
Sbjct: 454 GLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLID 488



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 4   KECHLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           KE  ++ A K+  ++ +   +  D + Y  +I GYC   R+++A ++ +++    ++ N 
Sbjct: 246 KEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNM 305

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +I+ +CK GRM +   +      +G   +  +Y+ L+DGY +   M  AF+  + 
Sbjct: 306 FVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDM 365

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M  N  +                G   +A++L+  ML+ G++P+ +  STL D   ++  
Sbjct: 366 MVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGK 425

Query: 171 SQE 173
           +++
Sbjct: 426 TEQ 428



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALKL+  +  RG+ P+ I+ +T++ G+    + ++A+ L+++     L  N +T   
Sbjct: 391 IDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINT 450

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK  RM +A  +F +M E     + +TY  LIDGY K  ++  A  +  EM    
Sbjct: 451 VINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLG 510

Query: 128 ISPNI 132
             P++
Sbjct: 511 FVPSV 515



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A+ +F Q+   G  PD  T   +   YC   R+  A    +++  + L  N
Sbjct: 139 LVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVN 198

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  ++D +C+ G+ + A  +   +  KG   NVVTY+ L+ GY K   M+ A  V +
Sbjct: 199 LVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVK 258

Query: 122 EMCENN--ISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E+ EN   +   +A           GR  +A ++ D M+  G+  +  + +T+
Sbjct: 259 EIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTM 311



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 38/208 (18%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA----------------- 46
           KE +L  A  L+ ++ ++GL+P++   + ++  +    ++DEA                 
Sbjct: 562 KEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCS 621

Query: 47  ---------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
                      + E L     +   I + I+I   CK GR+ DA  +F  +  KG   + 
Sbjct: 622 ASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDN 681

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------RPTEAMQLYDS 145
            TYS LI G   S ++  AF + +EM    ++PNI                + A+ L++ 
Sbjct: 682 FTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNK 741

Query: 146 MLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +   GI P+ +  +TL D + +   + E
Sbjct: 742 LQSKGISPNAITYNTLIDGHCKDGNTTE 769



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 2   LIKECHLDA-----ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           L+   H DA     AL +F ++   G    + + N ++        +  AV +F+++ C 
Sbjct: 99  LLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCA 158

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
              P+  T  I+  A+C++GR+  A     +M E G   N+V Y  ++DGY +    + A
Sbjct: 159 GTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVA 218

Query: 117 FDVYEEMCENNISPNI 132
             +   +    +SPN+
Sbjct: 219 RKLLHSLQVKGLSPNV 234



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 94/243 (38%), Gaps = 74/243 (30%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL---FEKLTCVQ- 57
           L K   +  A +LF ++ +     D +TY T+I GYC L  L  A Q+    E L  V  
Sbjct: 455 LCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPS 514

Query: 58  -------------------------------LKPNSITFTILIDAFCKEGRMDDATMMFS 86
                                          L PN++T+  LI  +CKEG + DA +++ 
Sbjct: 515 VEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYF 574

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN------------------- 127
           +M+EKG K N+   S L+  +++   +  A  V +++ + +                   
Sbjct: 575 EMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCSASTLNIGKVAHII 634

Query: 128 ------------ISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
                       I  NI        GR  +A  L++ +   G +PD    S+L  +   +
Sbjct: 635 ESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLI-HGCSA 693

Query: 169 SGS 171
           SGS
Sbjct: 694 SGS 696


>gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 77/131 (58%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE HLD AL L   +  +G+  +I  YN++I G C    L +A +LF+ L  + L P
Sbjct: 648 VLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVP 707

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + IT+  LID+ CKEG + DA  +F KM+ KG   NV  Y+ LIDGY K  NM+ A ++ 
Sbjct: 708 SEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLL 767

Query: 121 EEMCENNISPN 131
            ++    I P+
Sbjct: 768 IDLKARCIKPD 778



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 17/170 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  L  A++   ++ ++G+ PD ++Y  +I G+     +++A+   EK+    LKPN +
Sbjct: 170 REGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLV 229

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T ++  FCK+G++D+A  +F  +   G + +   Y  LIDG+    ++   F + E+M
Sbjct: 230 TYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDM 289

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  ISP+I            AGR +EA +     +  GI  D +  STL
Sbjct: 290 EKRGISPSIVTYNSIINGLCKAGRTSEADE-----VSKGIAGDAVTFSTL 334



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +LF  L    L P  ITY T+I   C    L +A QLFEK+      PN   +  
Sbjct: 690 LVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNS 749

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK G M++A  +   +  +  K +  T S LI+GY    +M+ A   + E  + +
Sbjct: 750 LIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKD 809

Query: 128 ISPNIAG 134
           I P+  G
Sbjct: 810 ILPDFLG 816



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D++ Y++ ICGY     L EA++  +++    + P+++++TILID F +EG ++ A    
Sbjct: 157 DVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFL 216

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            KM + G K N+VTY+ ++ G+ K   +  A+ ++ +M EN
Sbjct: 217 EKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLF-KMVEN 256



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  LF  + + G+E D   Y T+I G+C+   +D    L E +    + P+ +
Sbjct: 240 KKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIV 299

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I+  CK GR  +A       + KG   + VT+S L+ GY + +N+K   +    +
Sbjct: 300 TYNSIINGLCKAGRTSEA-----DEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRL 354

Query: 124 CENNI 128
            E+ +
Sbjct: 355 EEDGV 359



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C LDA  +LF ++  +G  P++  YN++I GYC    ++EA+ L   L    +KP+  T 
Sbjct: 724 CLLDAK-QLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTV 782

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           + LI+ +C +G M+ A   F +  +K    + + +  L+ G      M+ A  +  EM +
Sbjct: 783 SALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQ 842

Query: 126 NN 127
             
Sbjct: 843 TR 844



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +  R L P+I T   ++     L R+ E   L   +   +   + + ++  I  + +EG 
Sbjct: 114 VNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGV 173

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           + +A     +M+EKG   + V+Y+ LIDG+ +   ++ A    E+M ++ + PN+     
Sbjct: 174 LVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTA 233

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   G+  EA  L+  +   GI  D  +  TL D
Sbjct: 234 IMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLID 271



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A   +  ++   L  D +TY T+I GYC + R++EA+++F++     +   S  +  
Sbjct: 379 LEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVXRIEEALEIFDEFRKTSISSVS-CYKC 437

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           +I   C++G +D A  +F ++ EKG +    TY+ LI   F+ Q 
Sbjct: 438 MIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQG 482



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 40/157 (25%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D    L   +  RG+ P I+TYN+II G C   R  EA ++ + +       +++TF+ 
Sbjct: 279 IDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIA-----GDAVTFST 333

Query: 68  LIDAFCKE-----------------------------------GRMDDATMMFSKMLEKG 92
           L+  + +E                                   G ++DA   +  M    
Sbjct: 334 LLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMD 393

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             A+ VTY  +I+GY +   ++ A ++++E  + +IS
Sbjct: 394 LVADSVTYCTMINGYCRVXRIEEALEIFDEFRKTSIS 430



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 68/126 (53%), Gaps = 1/126 (0%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+E ++   L+   +L + G+  D++  NTII     +  L++A   ++ ++ + L  +S
Sbjct: 339 IEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADS 398

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +I+ +C+  R+++A  +F +   K   ++V  Y C+I G  +   +  A +V+ E
Sbjct: 399 VTYCTMINGYCRVXRIEEALEIFDE-FRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIE 457

Query: 123 MCENNI 128
           + E  +
Sbjct: 458 LNEKGL 463



 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 13/124 (10%)

Query: 53  LTCVQLKPNSITFTI-LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111
           LT +Q+  +++ F + ++ +  K GR+ DA  +     E  P  ++V YS +ID   K  
Sbjct: 594 LTNIQVNTSAVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEG 653

Query: 112 NMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
           ++  A D+   + +  I+ NI             G   +A +L+DS+ +  ++P  +  +
Sbjct: 654 HLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYA 713

Query: 160 TLAD 163
           TL D
Sbjct: 714 TLID 717



 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 19/149 (12%)

Query: 30  YNTIICGYC-SLNRLDEAVQLFEK-LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ++++I G C  L   ++A+ + +  LT + + P+S TF  LI +F  +G+M  A  +   
Sbjct: 16  WDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIHSFTSQGKMSRAIEVLEL 75

Query: 88  MLE---KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIA---------- 133
           M     + P  N V+ S +I G+ K    + A   +E    + +  PNIA          
Sbjct: 76  MTHDKVRYPFGNFVS-SSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALF 134

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLST 160
             GR  E   L   M R   + D +  S+
Sbjct: 135 QLGRVREVSDLVSWMEREEFVFDVVFYSS 163


>gi|414591617|tpg|DAA42188.1| TPA: hypothetical protein ZEAMMB73_899186 [Zea mays]
          Length = 265

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EPD + Y T++ GYC + R+DE + LF ++    +KP++I + I
Sbjct: 1   MEKALRVFDAMVSAGIEPDDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 60

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   ++GR   A + F +M E G   +  TY+ ++ G FK++    A  +++E+   N
Sbjct: 61  IIDGLFQDGRTVPAKVKFHEMTESGIAMDKYTYNIVLRGLFKNRCFDEAIFLFKELRAMN 120

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           +  N       IAG     R  EA  L+ S+ R+G++P
Sbjct: 121 VKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 158



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  D  TYN ++ G       DEA+ LF++L  + +K N IT   +I    +
Sbjct: 78  FHEMTESGIAMDKYTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQ 137

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +   G    VVTYS +I    K   ++ A D++  M      PN
Sbjct: 138 TRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 194



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ +IIT NT+I G     R++EA  LF  ++   L P 
Sbjct: 100 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 159

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++I+I    KEG +++A  MFS M   G + N    + ++    K   +  A     
Sbjct: 160 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 219

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 220 KIDERNFS 227



 Score = 35.8 bits (81), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 44/99 (44%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  LF  ++  GL P ++TY+ +I        ++EA  +F  +     +PNS    
Sbjct: 140 RVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLN 199

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            ++    K+  +  A    SK+ E+      +T   L+D
Sbjct: 200 HVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVD 238


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++AA  +   + + G+ P+++TYN ++ G C   R++EA Q  E++      P+
Sbjct: 336 LCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPD 395

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SIT+  L+ A C+  R DDA  + S++   G   + VTY+ L+DG +KS   + A  V E
Sbjct: 396 SITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 455

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM      P+             +G     M+L   +L  G++PD    S++ D+  +S 
Sbjct: 456 EMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSG 515



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 18/190 (9%)

Query: 4   KECHLDAALKLFGQLTDRG-----LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           K   +D AL+L   +  RG     L PD +T+N +I G C     ++A  LFE++    L
Sbjct: 263 KASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL 322

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           +P+ +TF  LID  CK G+++ A  +   M   G   NVVTY+ L+ G  KS  ++ A  
Sbjct: 323 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQ 382

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
             EEM  +   P+             A R  +A+QL   +   G  PD +  + L D  L
Sbjct: 383 FLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD-GL 441

Query: 167 QSSGSQEHCI 176
             SG  E  I
Sbjct: 442 WKSGKTEQAI 451



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 19/171 (11%)

Query: 11  ALKLF-GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AL++F G++   G+ P I+TYNTII G C  N L   ++LFE+L      P+ +T+  LI
Sbjct: 20  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLI 79

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--N 127
           D+ CK G +++A  +   M  +G   NVVTYS LI+G  K   +  A ++ +EM     +
Sbjct: 80  DSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 139

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG---IMPDGLLLSTLAD 163
           + PNI                 EA +L  S LR+G   + PD +  STL D
Sbjct: 140 VLPNIITYNSFLDGLCKQSMTAEACELMRS-LRDGSLRVSPDTVTFSTLID 189



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 19/181 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           L K+     A +L   L D  L   PD +T++T+I G C   ++DEA  +F+ +      
Sbjct: 154 LCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYV 213

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN IT+  L++  CK  +M+ A  M   M++KG   +V+TYS L+D + K+  +  A ++
Sbjct: 214 PNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 273

Query: 120 YEEMCENNISPNI-----------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
              M     +PN+                 AG   +A  L++ M+   + PD +    L 
Sbjct: 274 LHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALI 333

Query: 163 D 163
           D
Sbjct: 334 D 334



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L A ++LF +L +RG  PD++TYNT+I   C    L+EA +L   ++     PN
Sbjct: 47  LCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPN 106

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDV 119
            +T+++LI+  CK GR+D+A  +  +M  K      N++TY+  +DG  K      A ++
Sbjct: 107 VVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACEL 166

Query: 120 YEEMCENN--ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              + + +  +SP+              G+  EA  ++D M+  G +P+ +  + L +
Sbjct: 167 MRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 16/188 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLK 59
           L K   L+ A +L G ++ RG  P+++TY+ +I G C + R+DEA +L +++T     + 
Sbjct: 82  LCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVL 141

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAF 117
           PN IT+   +D  CK+    +A  +   + +   +   + VT+S LIDG  K   +  A 
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 201

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            V+++M      PN+            A +   A  + +SM+  G+ PD +  S L D  
Sbjct: 202 SVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 261

Query: 166 LQSSGSQE 173
            ++S   E
Sbjct: 262 CKASRVDE 269



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 35/121 (28%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +    D AL+L  +L   G +PD +TYN ++ G     + ++A+ + E++     +P+
Sbjct: 406 LCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPD 465

Query: 62  SITFTI-----------------------------------LIDAFCKEGRMDDATMMFS 86
           S TF                                     ++D  C+ G++DD   M  
Sbjct: 466 SFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIK 525

Query: 87  K 87
           +
Sbjct: 526 E 526


>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 706

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 17/187 (9%)

Query: 2   LIKECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + ++C  LD A K+FG++  RG++PD +T++TII    S    D+AV+ FEK+     +P
Sbjct: 190 VFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKAVEWFEKMPLFGCEP 249

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T++++ID++ K G +D A  ++ +   +  +    T+S LI  Y  + N     +VY
Sbjct: 250 DDVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVY 309

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           EEM    + PN+            A RP +A  +Y  M+ N I+P+    ++L    L +
Sbjct: 310 EEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASL----LHA 365

Query: 169 SGSQEHC 175
            G    C
Sbjct: 366 YGRARFC 372



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL L+ +        +  T++T+I  Y      D  + ++E++  + +KPN +
Sbjct: 263 KAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNLV 322

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  L+DA  +  R   A  ++ +M+      N  TY+ L+  Y +++  + A  VY EM
Sbjct: 323 VYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYREM 382

Query: 124 CENNISPNIAGRPTEAMQLYDSML 147
            E  +  N          LY+S+L
Sbjct: 383 REKEMDLNT--------HLYNSLL 398



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 63/125 (50%), Gaps = 7/125 (5%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQLKPNSITFT 66
           AL ++ ++ ++ ++ +   YN+++     +   D A ++FE +    TC    P+S TF+
Sbjct: 375 ALVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTC---SPDSWTFS 431

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  +   GR+ +A  M ++M+E G +  +   + L+  Y K++        + ++ + 
Sbjct: 432 SLITIYSCSGRVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDM 491

Query: 127 NISPN 131
            I P+
Sbjct: 492 GIEPD 496



 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 52/220 (23%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L ++ ++   G++P+++ YNT++       R  +A  +++++    + PN  T+  L
Sbjct: 303 DGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASL 362

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANV------------------------------- 97
           + A+ +    +DA +++ +M EK    N                                
Sbjct: 363 LHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDT 422

Query: 98  -----VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
                 T+S LI  Y  S  +  A  +  EM E+   P I            A R  + +
Sbjct: 423 CSPDSWTFSSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVV 482

Query: 141 QLYDSMLRNGIMPD----GLLLSTLADYNLQSSGSQEHCI 176
           + ++ +L  GI PD    G LL+ +     +  G    C+
Sbjct: 483 KTFNQLLDMGIEPDDRFCGCLLNVMTQTPKEELGKLIDCV 522



 Score = 38.9 bits (89), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 7   HLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           + D A ++F  +       PD  T++++I  Y    R+ EA ++  ++     +P     
Sbjct: 406 YTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVL 465

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T L+  + K  R DD    F+++L+ G + +     CL++
Sbjct: 466 TSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCGCLLN 505


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 103/180 (57%), Gaps = 12/180 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H D A ++F ++  +G+ P++I+Y++++ G+C   +L+E+ +LF ++    ++PN
Sbjct: 72  LCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPN 131

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F +LID  CKEG++ +A  +    +++G   ++VTY+ LIDG+ K  ++ SA  ++ 
Sbjct: 132 LVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFL 191

Query: 122 EM----CENN-ISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M    CE+N IS  I         +  EAM LY+ M + G  P+    STL    LQ+ 
Sbjct: 192 SMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTG 251



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 91/168 (54%), Gaps = 5/168 (2%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE  +  A KL      RG+  D++TYN++I G+C +  L  A +LF  +     + 
Sbjct: 141 ILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEH 200

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N I++TILI+ +CK  ++++A  ++++M + G + NV TYS L+ G  ++  +  A  ++
Sbjct: 201 NEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLF 260

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
             M  + IS +        +   D + +NG++ + + L + L  YN +
Sbjct: 261 GVMKASGISVD----SCIYVIFLDGLCKNGVLFEAMELFNELKSYNFK 304



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 3/125 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A++LF +L     + D  +Y+ +I G C   +++ A + F++L+   L+PN
Sbjct: 282 LCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPN 341

Query: 62  SITFTILIDAFCKEGRMDDATMMF---SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +T  I+I  FC+  ++D A ++F    KM E G   +++TY+ L+ G+ +S  ++   +
Sbjct: 342 VVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVN 401

Query: 119 VYEEM 123
           +  +M
Sbjct: 402 LLHKM 406



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ L+ ++   G  P++ TY+T++ G     ++ +A +LF  +    +  +S  + I
Sbjct: 218 VEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVI 277

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            +D  CK G + +A  +F+++     K +  +YS LIDG  K+  ++ A++ ++++ +  
Sbjct: 278 FLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEG 337

Query: 128 ISPNIAG------------RPTEAMQLYDSMLR---NGIMPDGLLLSTL 161
           + PN+              +  +A  L++ M +   NG  PD +  +TL
Sbjct: 338 LQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTL 386



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---L 58
           L K   ++ A + F QL+  GL+P+++T N +I G+C + ++D+A  LFEK+  ++    
Sbjct: 317 LCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGC 376

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
            P+ IT+  L+  FC+  ++++   +  KM ++
Sbjct: 377 TPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 409



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 29/135 (21%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL-------------- 103
           L P+  T  IL +  C   R+ +     + +L +G   ++VTY+ L              
Sbjct: 6   LSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVAT 65

Query: 104 ---IDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLR 148
              IDG  K  +   A +++EEM    + PN+            AG+  E+ +L++ M+ 
Sbjct: 66  CIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVD 125

Query: 149 NGIMPDGLLLSTLAD 163
            G+ P+ +  + L D
Sbjct: 126 QGVQPNLVQFNVLID 140


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA ++F ++  RG +PD  TY T+I G C L +  EA +LF+++      P+ +T++ 
Sbjct: 172 IDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSC 231

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C+ G +D+A  +F KM +K  + NV TYS L+DG  K+     A ++ E M    
Sbjct: 232 LMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKR 291

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             PN+             G+  EA++  D M   G+ PD  L   + +
Sbjct: 292 HKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIIN 339



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+ LF ++  + +EP++ TY++++ G C      EA++L E +   + KPN +T++
Sbjct: 241 NVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYS 300

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+  CKEG++ +A     +M  +G K +   Y  +I+G+   +  + A    +EM   
Sbjct: 301 TLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLG 360

Query: 127 NISPNIAGRPTEAMQL-YDSMLRNGIMPDGLLLSTLADY 164
            ISPN   R T ++ +  ++M+  G+  +G L  +   Y
Sbjct: 361 QISPN---RVTWSLHVKLNNMVVQGLCTNGNLNRSFQLY 396



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 13/176 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++ D G +P   +Y ++       N+L  A+  ++ +  + ++ + ++  +LI 
Sbjct: 104 AIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIK 163

Query: 71  AFCK-EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           A CK  G +D A  +F +M ++G   +  TY  LI+G  K      A ++++EM     S
Sbjct: 164 ALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCS 223

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           P++            AG   EAM L+D M +  I P+    S+L D   ++ GS E
Sbjct: 224 PSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLE 279



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A++   ++  +GL+PD   Y  II G+C++ +  EA    +++   Q+ PN
Sbjct: 306 LCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPN 365

Query: 62  SITFTI-------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            +T+++       ++   C  G ++ +  ++  M  +G   +  T+  L+  + K  ++ 
Sbjct: 366 RVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLH 425

Query: 115 SAFDVYEEMCENNISPN 131
            A  +++EM  +   P+
Sbjct: 426 KAARIFDEMVLDGCVPD 442


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A  +  Q+ + G EPDI+ YN ++ GY    ++ +A  L  ++  V   PN+ 
Sbjct: 281 REGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAA 340

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +FTILI +FCK  +MD+A  +F++M   G +A+VVTY+ LI G+ K  N   A+++ ++M
Sbjct: 341 SFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDM 400

Query: 124 CENNISPN--------IAGRPTEA----MQLYDSMLRNGIMPD 154
            +    P+        +A    E     M+L + M + G +PD
Sbjct: 401 IQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPD 443



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+++  ++   G EPD   +  ++   C    + EA  LFE +  V+  PN   FT 
Sbjct: 216 VKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR-VRFNPNLRHFTS 274

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +C+EG++ +A  +  ++ E G + ++V Y+ L+ GY ++  M+ AFD+  EM + N
Sbjct: 275 LLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN 334

Query: 128 ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             PN A             +  EAM+++  M  +G   D +  +TL
Sbjct: 335 CGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTL 380



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 66/125 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+++F ++   G E D++TY T+I G+C     D+A ++ + +      P+ +++  
Sbjct: 355 MDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLC 414

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++ A  K+  +++   +  +M + G   ++  Y+ +I    K  ++K A  ++ EM    
Sbjct: 415 IMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGG 474

Query: 128 ISPNI 132
           ++P +
Sbjct: 475 LNPGL 479



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+  ++L  ++   G  PD+  YNT+I   C L  L EAV+L+ ++    L P   
Sbjct: 421 KKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLD 480

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG--PKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           T+ +++  F  +G + +A   F +M+E+G        T   L +   +++ ++ A +++ 
Sbjct: 481 TYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWS 540

Query: 122 EM----CENNIS 129
            M    CE N+S
Sbjct: 541 CMTTKGCELNVS 552


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+ LF ++ D GL P+++TY  +I G CS  +LD A +L + +    L PN  
Sbjct: 259 KSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEW 318

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T ++LIDA CK  R+ +A ++   +++KG K N + Y+ LIDG  K+    +A  + + +
Sbjct: 319 TCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTL 378

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
                 P+       I G       +EAM + D M+  G+ P  +  + + D  ++  G+
Sbjct: 379 VSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGA 438



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G EP+++ YN +I GYC++  L+ AV +FE++      PN  T+T LI  FCK  ++D A
Sbjct: 207 GFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRA 266

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------- 134
            M+FS+M++ G   NVVTY+ LI G      +  A+ + + M  + + PN          
Sbjct: 267 MMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDA 326

Query: 135 -----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                R  EA  L  S+++ GI  + ++ ++L D
Sbjct: 327 LCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLID 360



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +LF  +  RG      TY  ++ G C    + EA+ +F  +      P+   +  
Sbjct: 123 LAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYAT 182

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C  GR  +A  + S  + +G + NVV Y+ LIDGY    +++ A DV+E M  N 
Sbjct: 183 MVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNG 242

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            SPN+            + +   AM L+  M+  G++P+ +  + L
Sbjct: 243 CSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTAL 288



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K     AA +L   L  +G  PD  TY+++I G C    L EA+ + + +    ++P+
Sbjct: 362 LCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPS 421

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+TI+ID   +E   D +  +  KM+  G K +V TY+  +  Y     M+ A  +  
Sbjct: 422 PVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMML 481

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M ++ + PN+             G  ++A   +  M+ NG  P+
Sbjct: 482 HMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPN 526



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L G L  +G++ + I Y ++I G C   R   A +L + L      P+
Sbjct: 327 LCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPD 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T++ LID  C++  + +A ++   M+EKG + + VTY+ +ID   +      +  + +
Sbjct: 387 AHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILD 446

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +M    I P++             GR  +A  +   M+ +G+ P+
Sbjct: 447 KMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPN 491



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 53/111 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++E   D + K+  ++   G++PD+ TY   +  YC   R+++A  +   +    + PN
Sbjct: 432 LVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPN 491

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
            +T+  LI  +   G    A   F  M+  G K N  +Y+ L+    K ++
Sbjct: 492 LVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKES 542



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TY T+I  YC    L  + +    L      P+S  +T  +  +C+ G +  A  +F  M
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
             +G      TY+ L+ G   +  ++ A  V+  M  +  +P+             AGR 
Sbjct: 134 PLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRT 193

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA  L    +  G  P+ ++ + L D
Sbjct: 194 REAETLLSDAMAEGFEPNVVVYNALID 220



 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 52/127 (40%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A  L  ++    L P    Y +II   C L  L EA+   + +      P   ++ 
Sbjct: 593 RLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYR 652

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I + C+EG +  A  +F  ML K      + +  LIDG  +   +     +   M E 
Sbjct: 653 HIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEK 712

Query: 127 NISPNIA 133
           N  P+ A
Sbjct: 713 NYRPSDA 719



 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 7/158 (4%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++    L  +I  YN  +   C ++RLDEA  L  ++    L P+   +T +I   C
Sbjct: 565 LLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCC 624

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS-PNI 132
           +   + +A      M++ G    + +Y  +I    +  ++++A  V+ +M     +   I
Sbjct: 625 RLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEI 684

Query: 133 AGRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSS 169
           A R      L D +L+ G + +   LLS + + N + S
Sbjct: 685 AWR-----ILIDGLLQKGYVAECSSLLSVMEEKNYRPS 717


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F +++ RGL P ++++NT+I GYC    ++E   L   +   ++ P+  T++ LI+
Sbjct: 245 ARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALIN 304

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKE R+++A  +F +M E G   N VT++ LIDG  K   +  A   +E M +  I P
Sbjct: 305 GLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRP 364

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G   EA +L + M+ NG  PD +  +TL D
Sbjct: 365 DLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMD 409



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 12/151 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + PD+ TY+ +I G C  +R++EA  LF+++  + L PN +TFT LID  CK G++D A 
Sbjct: 292 ISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLAL 351

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
             F  M ++G + +++TY+ LI+G  +  ++K A  +  EM  N   P+           
Sbjct: 352 RNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGC 411

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              G    A+++ D M+  GI  D +  + L
Sbjct: 412 CKDGDMDSALEIKDRMVEEGIELDDVAFTAL 442



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 3/137 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL+ F  + DRG+ PD+ITYN +I G C    L EA +L  ++     KP+ I
Sbjct: 343 KHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKI 402

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT L+D  CK+G MD A  +  +M+E+G + + V ++ LI G  +   ++ A  + ++M
Sbjct: 403 TFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDM 462

Query: 124 CENNISPNIAGRPTEAM 140
                 P+    PT  M
Sbjct: 463 LSAGHKPD---DPTYTM 476



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A  LF ++ + GL P+ +T+ T+I G C   ++D A++ FE +    ++P+
Sbjct: 306 LCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPD 365

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  C++G + +A  + ++M+  G K + +T++ L+DG  K  +M SA ++ +
Sbjct: 366 LITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKD 425

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M E  I   ++A           GR  +A ++   ML  G  PD
Sbjct: 426 RMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPD 470



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 12/182 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A KL  ++   G +PD IT+ T++ G C    +D A+++ +++    ++ +
Sbjct: 376 LCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELD 435

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + FT LI   C++GR+ DA  M   ML  G K +  TY+ +ID + K  ++K    + +
Sbjct: 436 DVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLK 495

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM  +   P +             G+   A  L  +ML   ++P+ +  + L D + +  
Sbjct: 496 EMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHG 555

Query: 170 GS 171
            S
Sbjct: 556 SS 557



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
            + + ++ D G  P++  +N ++ G+C +  +  A  +F++++   L+P+ ++F  LI  
Sbjct: 211 WEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISG 270

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           +C+   +++  ++ S M  +    +V TYS LI+G  K   ++ A  +++EMCE  + PN
Sbjct: 271 YCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPN 330

Query: 132 IA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         G+   A++ ++ M   GI PD +  + L +
Sbjct: 331 GVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALIN 374



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +    KL  ++   G  P ++TYN ++ G+C   ++  A  L   +  +++ PN I
Sbjct: 483 KKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDI 542

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           TF IL+D  CK G   D  +      EKG  ++  +Y+ L++
Sbjct: 543 TFNILLDGHCKHGSSVDFKIFNG---EKGLVSDYASYTALVN 581


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A +L  ++   G  P++  YN +I   C    LD+A  L+  ++ + L+PN
Sbjct: 340 LRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPN 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ILID+FC+ GR+D A   F +M++ G    V  Y+ LI+G  K  ++ +A  ++ 
Sbjct: 400 GITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFI 459

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P        I+G     +  +A +LY+ M+ NGI P+    + L
Sbjct: 460 EMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTAL 511



 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A KL+ ++ D G+ P++ T+  +I G CS N++ EA +LF++L   ++KP  +
Sbjct: 482 KDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEV 541

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI+ +C++G++D A  +   M +KG   +  TY  LI G   +  +  A D  +++
Sbjct: 542 TYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDL 601

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            + N+  N              GR  EA+     M++ GI  D +  + L D  L+
Sbjct: 602 HKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALK 657



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 23/179 (12%)

Query: 6   CH---LDAALK---------LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL 53
           CH   +D ALK         L   + D+GL PD + Y ++I  Y       +A + ++ +
Sbjct: 647 CHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLM 706

Query: 54  TCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
              +  PN +T+T L++  CK G MD A ++F +M       N +TY C +D   K  NM
Sbjct: 707 VTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNM 766

Query: 114 KSAFDVYEEMCE----NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           K A  ++  M +    N ++ NI        GR  EA ++   M  NGI PD +  STL
Sbjct: 767 KEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTL 825



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AA  LF ++T++G+EP   T+ ++I GYC   ++ +A +L+ K+    + PN  TFT 
Sbjct: 451 LSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTA 510

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C   +M +A+ +F +++E+  K   VTY+ LI+GY +   +  AF++ E+M +  
Sbjct: 511 LISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKG 570

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+              GR ++A    D + +  +  + +  S L
Sbjct: 571 LVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSAL 616



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   LD A+  F ++   G+   +  YN++I G C    L  A  LF ++T   ++P + 
Sbjct: 412 RSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTAT 471

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI  +CK+ ++  A  +++KM++ G   NV T++ LI G   +  M  A ++++E+
Sbjct: 472 TFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDEL 531

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            E  I P               G+  +A +L + M + G++PD
Sbjct: 532 VERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPD 574



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 19/175 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE     A + +  +      P+++TY  ++ G C    +D A  LF+++    + PNSI
Sbjct: 692 KEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSI 751

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   +D   KEG M +A  +   ML KG  AN VT++ +I G+ K      A  V  EM
Sbjct: 752 TYGCFLDNLTKEGNMKEAIGLHHAML-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEM 810

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
            EN I P+             +G    +++L+D+ML  G+ PD      L  YNL
Sbjct: 811 TENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPD------LVAYNL 859



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 72/128 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +D A +L   +  +GL PD  TY  +I G CS  R+ +A    + L    +K N +
Sbjct: 552 RDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEM 611

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ L+  +C+EGR+ +A     +M+++G   ++V ++ LIDG  K  + K+ FD+ ++M
Sbjct: 612 CYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDM 671

Query: 124 CENNISPN 131
            +  + P+
Sbjct: 672 HDQGLRPD 679



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+++   L  +GL  D++TY T++ G+C L + +  +QL +++  +   P 
Sbjct: 270 LCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPT 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               + L+D   K+G++DDA  +  K+   G   N+  Y+ LI+   K  ++  A  +Y 
Sbjct: 330 EAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYS 389

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGI 151
            M   N+ PN             +GR   A+  +D M+++GI
Sbjct: 390 NMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGI 431



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 24/153 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  A+ L   +  +GL  + +T+N II G+C L R  EA ++  ++T   + P+
Sbjct: 760 LTKEGNMKEAIGLHHAML-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPD 818

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI  +C+ G +  +  ++  ML +G + ++V Y+ LI G               
Sbjct: 819 CVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYG--------------- 863

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
             C N       G   +A +L D MLR GI+PD
Sbjct: 864 -CCVN-------GELDKAFELRDDMLRRGIIPD 888



 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             +A ++L  ++ + G  P     + ++ G     ++D+A +L  K+      PN   + 
Sbjct: 310 QFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYN 369

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI++ CK G +D A +++S M     + N +TYS LID + +S  +  A   ++ M ++
Sbjct: 370 ALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQD 429

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I   +             G  + A  L+  M   G+ P     ++L
Sbjct: 430 GIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSL 476



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G +  I+TYN +I G C  +R+ EAV++   L    L  + +T+  L+  FC+  + +  
Sbjct: 255 GFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAG 314

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  +M+E G        S L+DG  K   +  A+++  ++      PN+         
Sbjct: 315 IQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINS 374

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               G   +A  LY +M    + P+G+  S L D
Sbjct: 375 LCKGGDLDKAELLYSNMSLMNLRPNGITYSILID 408



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K        +LF +  + G+ PD  T + ++   C L     A +    +       +
Sbjct: 200 LLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLS 259

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LI   CK  R+ +A  +   +  KG  A+VVTY  L+ G+ + Q  ++   + +
Sbjct: 260 IVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMD 319

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E   SP  A            G+  +A +L   + R G +P+  + + L
Sbjct: 320 EMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNAL 371


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 48/216 (22%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++ D G +P+++TY +++ G C + +L EAV LF ++      P+ + + +
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID F K+G M +A  +F +MLEKG    V TY+ L+ G+ +         ++++M    
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 128 ISPNI-----------------------------------------------AGRPTEAM 140
             PNI                                                G+P EA 
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQ 282

Query: 141 QLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           +L   M+R+G+ PD +  + L D     SG+ +H I
Sbjct: 283 RLLREMIRSGVGPDIVSYNILID-GYSKSGALDHAI 317



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             + A  +F  +  +G  P++ +Y+ +I G C   ++DEA +L  ++     +PN +T+ 
Sbjct: 67  RFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYG 126

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+   CK G++ +A  +FS+M+ +G   + V Y+ LIDG+ K  +M  A+ ++EEM E 
Sbjct: 127 SLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEK 186

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P +             G       L+  MLR G +P+    + L D
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLD 235



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 91/168 (54%), Gaps = 18/168 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++   G  PD+++YNT++ G CS  +  EA +L  ++    + P+ +++ ILID
Sbjct: 246 AHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILID 305

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G +D A  +F ++ + G + +  +YS +ID   ++  + +AF V+++M  N  +P
Sbjct: 306 GYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAP 365

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           + A             R TE+ +L+ +M++   +P       + +YNL
Sbjct: 366 DAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP------LIPEYNL 407



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF  +  +G  P+I T+N ++ G+C +  + EA +LF ++  +   P+ +++  L+   C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMC 273

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
            +G+  +A  +  +M+  G   ++V+Y+ LIDGY KS  +  A  ++ E+ ++ + P+  
Sbjct: 274 SKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF 333

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      AG+   A  ++  M+ NG  PD  ++  L
Sbjct: 334 SYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPL 373



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K    D     +  +   G  P+  TY  ++   C   R +EA  +F  +      P
Sbjct: 26  VLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSP 85

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  +++ILI   C+  ++D+A  + ++M++ G + NVVTY  L+ G  K   +K A D++
Sbjct: 86  NVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLF 145

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             M      P+              G   EA +L++ ML  G +P      T+  YN   
Sbjct: 146 SRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP------TVFTYNSLL 199

Query: 169 SG 170
           SG
Sbjct: 200 SG 201



 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ++YN ++       R D     +  +      PN+ T+  L+ + C+  R ++A  +F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           M  +G   NV +YS LI G  + Q +  A ++  EM +    PN+             G+
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             EA+ L+  M+  G  PDG++ + L D
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLID 165



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+KLF ++   GLEPD  +Y+TII   C   ++  A  +F+ +      P++ 
Sbjct: 309 KSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
               L+   C+  R+ ++  +F  M++      +  Y+ L+    K++      +++ E+
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 124 CENNISPNI 132
            E   SP++
Sbjct: 429 TERGFSPDV 437


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A K+F ++   GL PD ++YNT++ GYC      EA+ +F ++T   + P+ +
Sbjct: 272 KAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV 331

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI   CK G ++ A  +  +M E+G + N VT++ LIDG+ K   +  A      M
Sbjct: 332 TFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 391

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  I P++             GR  EA +L   M   G+ PD +  ST+
Sbjct: 392 KQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTI 441



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 97/175 (55%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ++ K  +L+ A+ L  Q+ +RGL+ + +T+  +I G+C    LD+A+     +   ++KP
Sbjct: 339 VMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKP 398

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + +  LI+ +C  GRMD+A  +  +M  KG K +VVTYS +I  Y K+ +  SAF++ 
Sbjct: 399 SVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELN 458

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++M E  + P+               R ++A  L+ +M++ G+ PD    ++L D
Sbjct: 459 QQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 513



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + + +  L +A + F  +   G+ P++ TYN ++   C      EA+ +   +      P
Sbjct: 164 LALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGP 223

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  L+ AF + G +D A  +   M E G K N+VT++ +++G  K+  M+ A  V+
Sbjct: 224 NVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 283

Query: 121 EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM    ++P+             AG   EA+ ++  M + GIMPD +  ++L
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 336



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 84/147 (57%), Gaps = 12/147 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++  +GL+PD++TY+TII  YC       A +L +++    + P++IT++ 
Sbjct: 416 MDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSS 475

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C E R+ DA ++F  M++ G + +  TY+ LIDG+ K  N++SA  ++++M +  
Sbjct: 476 LIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAG 535

Query: 128 ISPNI------------AGRPTEAMQL 142
           + P++            + R  EA QL
Sbjct: 536 VLPDVVTYSVLINGLSKSARAMEAQQL 562



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C   +A +L  Q+ ++G+ PD ITY+++I   C   RL +A  LF+ +  + L+P+  
Sbjct: 447 KNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEF 506

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----FDV 119
           T+T LID  CKEG ++ A  +  KM++ G   +VVTYS LI+G  KS     A    F +
Sbjct: 507 TYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 566

Query: 120 YEE 122
           Y E
Sbjct: 567 YHE 569



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   AL +   +   G  P+++TYNT++  +     +D A +L   +    LKPN +TF 
Sbjct: 205 HRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFN 264

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +++  CK G+M+DA  +F +M+ +G   + V+Y+ L+ GY K+     A  V+ EM + 
Sbjct: 265 SMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK 324

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P++            AG    A+ L   M   G+  + +  + L D
Sbjct: 325 GIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALID 373



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 19/164 (11%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++++AL L  ++   G+ PD++TY+ +I G     R  EA QL  KL      P + 
Sbjct: 517 KEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANT 576

Query: 64  TF---------------TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            +                 L+  FC +G M++A  ++  ML++    +   YS LI G+ 
Sbjct: 577 KYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHC 636

Query: 109 KSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIM 152
           ++ N+  A   +++M +   +PN     T  + L   +  NG++
Sbjct: 637 RAGNVMKALSFHKQMLQGGFAPN----STSTISLIRGLFENGMV 676



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 27/181 (14%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L  E  L  A  LF  +   GL+PD  TY ++I G+C    ++ A+ L +K+    + P
Sbjct: 479 VLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLP 538

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGP---------------KANVVTYSCLID 105
           + +T+++LI+   K  R  +A  +  K+  + P               KA + +   L+ 
Sbjct: 539 DVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLK 598

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           G+     M  A  VY+ M + N + +             AG   +A+  +  ML+ G  P
Sbjct: 599 GFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAP 658

Query: 154 D 154
           +
Sbjct: 659 N 659



 Score = 43.1 bits (100), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 55/124 (44%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K++  + DR    D   Y+ +I G+C    + +A+   +++      PNS +   
Sbjct: 606 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTIS 665

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    + G + +A  +  ++L     A+      LID      N+ +  DV   M ++ 
Sbjct: 666 LIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDG 725

Query: 128 ISPN 131
           + P+
Sbjct: 726 LLPS 729


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++ + + A  L   +   GL PD +TY +II G+     L +A ++F ++    + P+
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPS 564

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+LI A   +  +D A M FSKMLEK   ANV+TY+ +I+G   ++ M  A+  ++
Sbjct: 565 VVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFD 624

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  I PN              G   EA++LY  ML   I PD    S  
Sbjct: 625 EMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVF 676



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A  +  ++   G  PD+ITYN  +   C     +EA  L E +    L P+ +T+T +I
Sbjct: 478 VAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSII 537

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           + F K G +  A  +F++ML KG   +VVTY+ LI  +   Q +  AF  + +M E ++ 
Sbjct: 538 NGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVP 597

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            N+              R  EA + +D M   GI+P+    + L +
Sbjct: 598 ANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILIN 643



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A  LF +L  R L P +ITYNT+I G C    LD A++L +++T   L P+  T+TI
Sbjct: 371 ISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++   K G +  A   F++ML KG K +   Y+  I G  K  +   AF + EEM    
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG 490

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G   EA  L ++M+ +G++PD +  +++ +
Sbjct: 491 FPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIIN 538



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  ++G +   G++P ++TYNT++  YC   R+D+A++L  ++      PN +T+ +
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++   K+G ++ A  +  +ML  G   +  TY+ LI+G+ +      AFD+ EEM    
Sbjct: 256 LVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRR 315

Query: 128 ISPNIAGRPTEAMQL------------YDSMLRNGIMPDGLLLSTL 161
             P ++   T    L            +  ML++   PD +  ++L
Sbjct: 316 AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSL 361



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  +      PDI+++N+++ GYC    + EA  LF++L C  L P  IT+  LI   C 
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--- 131
            G +D A  +  +M ++G   ++ TY+ L++G FK   +  A   + EM    + P+   
Sbjct: 403 WGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFA 462

Query: 132 ----IAGR-----PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
               I G       + A  + + ML  G  PD +  +       Q    +E C
Sbjct: 463 YNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEAC 515



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 68/127 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A   F ++  +GL+PD   YNT I G   +     A  + E++      P+ IT+ 
Sbjct: 440 YVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYN 499

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + + A C++G  ++A  +   M+  G   + VTY+ +I+G+ K+ +++ A +V+ EM   
Sbjct: 500 VFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK 559

Query: 127 NISPNIA 133
            ++P++ 
Sbjct: 560 GVAPSVV 566



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L +F ++   GL PD+   N I+      N L +A  ++  +    +KP  +T+  ++D+
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NIS 129
           +CKEGR+D A  + S+M E+G   N VTY+ L++G  K   ++ A  + EEM  +  N+S
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284

Query: 130 -----PNI-----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
                P I      G   EA  L + M+     P      TL+ YN
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP------TLSTYN 324



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A   F ++ ++ +  ++ITYN II G C   R+DEA + F+++    + PN  ++TI
Sbjct: 581 LDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTI 640

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C  G  ++A  ++ +ML++  + +  T+S  +      +N+   + V+   C  +
Sbjct: 641 LINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFL------KNLHRDYQVHAVQCVES 694

Query: 128 ISPNI 132
           +  N+
Sbjct: 695 LIQNV 699



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D AL+L  ++ +RG  P+ +TYN ++ G      L++A  L E++    L  ++ 
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FC++G   +A  +  +M+ +     + TY+ L+ G  K   +      + +M
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++  +P+I             G  +EA  L+D +    ++P  +  +TL
Sbjct: 347 LKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTL 396



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  L  ++ + GL     TYN +I G+C      EA  L E++   +  P 
Sbjct: 260 LSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPT 319

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+   CK  ++    + FS ML+     ++V+++ L+ GY ++  +  AF +++
Sbjct: 320 LSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFD 379

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+   ++ P +             G    A++L   M   G+ PD    + L +
Sbjct: 380 ELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVN 433


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 48/216 (22%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++ D G +P+++TY +++ G C + +L EAV LF ++      P+ + + +
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID F K+G M +A  +F +MLEKG    V TY+ L+ G+ +         ++++M    
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 128 ISPNI-----------------------------------------------AGRPTEAM 140
             PNI                                                G+P EA 
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQ 282

Query: 141 QLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           +L   M+R+G+ PD +  + L D     SG+ +H I
Sbjct: 283 RLLREMIRSGVGPDIVSYNILID-GYSKSGALDHAI 317



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             + A  +F  +  +G  P++ +Y+ +I G C   ++DEA +L  ++     +PN +T+ 
Sbjct: 67  RFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYG 126

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+   CK G++ +A  +FS+M+ +G   + V Y+ LIDG+ K  +M  A+ ++EEM E 
Sbjct: 127 SLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEK 186

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P +             G       L+  MLR G +P+    + L D
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLD 235



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 18/168 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++   G  PD+++YNT+I G CS  +  EA +L  ++    + P+ +++ ILID
Sbjct: 246 AHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILID 305

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G +D A  +F ++ + G + +  +YS +ID   ++  + +AF V+++M  N  +P
Sbjct: 306 GYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAP 365

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           + A             R TE+ +L+ +M++   +P       + +YNL
Sbjct: 366 DAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP------LIPEYNL 407



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF  +  +G  P+I T+N ++ G+C +  + EA +LF ++  +   P+ +++  LI   C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMC 273

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
            +G+  +A  +  +M+  G   ++V+Y+ LIDGY KS  +  A  ++ E+ ++ + P+  
Sbjct: 274 SKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF 333

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      AG+   A  ++  M+ NG  PD  ++  L
Sbjct: 334 SYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPL 373



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K    D     +  +   G  P+  TY  ++   C   R +EA  +F  +      P
Sbjct: 26  VLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSP 85

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  +++ILI   C+  ++D+A  + ++M++ G + NVVTY  L+ G  K   +K A D++
Sbjct: 86  NVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLF 145

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             M      P+              G   EA +L++ ML  G +P      T+  YN   
Sbjct: 146 SRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP------TVFTYNSLL 199

Query: 169 SG 170
           SG
Sbjct: 200 SG 201



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ++YN ++       R D     +  +      PN+ T+  L+ + C+  R ++A  +F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           M  +G   NV +YS LI G  + Q +  A ++  EM +    PN+             G+
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             EA+ L+  M+  G  PDG++ + L D
Sbjct: 138 LKEAVDLFSRMVYRGCPPDGVVYNVLID 165



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 63/129 (48%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+KLF ++   GLEPD  +Y+TII   C   ++  A  +F+ +      P++ 
Sbjct: 309 KSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
               L+   C+  R+ ++  +F  M++      +  Y+ L+    K++      +++ E+
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 124 CENNISPNI 132
            E   SP++
Sbjct: 429 TERGFSPDV 437



 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 16/122 (13%)

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           V     ++++  L++   K GR D     ++ ML  G   N  TY  L+    ++Q  + 
Sbjct: 11  VHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEE 70

Query: 116 AFDVYEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD----GLLLS 159
           A  V+  M     SPN       IAG     +  EA +L + M+  G  P+    G LLS
Sbjct: 71  ARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS 130

Query: 160 TL 161
            L
Sbjct: 131 GL 132


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 97/177 (54%), Gaps = 15/177 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H D A ++F ++  +G+ P++I+Y++++ G+C   +L+E+ +LF ++    ++PN
Sbjct: 173 LCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPN 232

Query: 62  SITFTILIDAFCKEGRMDD---ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            + F +LID  CKEG++ D   A  +F  M  KG + N ++Y+ LI+GY K   ++ A +
Sbjct: 233 LVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMN 292

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +Y EM +    PN+             G+  +A +L+  M  +GI  D  +     D
Sbjct: 293 LYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLD 349



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 18/166 (10%)

Query: 21  RGLEPDIITYNTII---CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           RG  PDI+TYNT+I    G C +   DEA ++FE++    + PN I+++ L+  FC  G+
Sbjct: 154 RGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGK 213

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS---QNMKSAFDVYEEM----CENN-IS 129
           ++++  +F++M+++G + N+V ++ LID   K     ++ SA  ++  M    CE+N IS
Sbjct: 214 LEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEIS 273

Query: 130 PNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
             I         +  EAM LY+ M + G  P+    STL    LQ+
Sbjct: 274 YTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQT 319



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +A KLF  +  +G E + I+Y  +I GYC + +++EA+ L+ ++  V  +PN  T++ 
Sbjct: 252 LSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYST 311

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+    + G++ DA  +F  M   G   +   Y   +DG  K+  +  A +++ E+   N
Sbjct: 312 LLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYN 371

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              +             AG+   A + +  + + G+ P+
Sbjct: 372 FKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPN 410



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 3/125 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A++LF +L     + D  +Y+ +I G C   +++ A + F++L+   L+PN
Sbjct: 351 LCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPN 410

Query: 62  SITFTILIDAFCKEGRMDDATMMF---SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +T  I+I  FC+  ++D A ++F    KM E G   +++TY+ L+ G+ +S  ++   +
Sbjct: 411 VVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVN 470

Query: 119 VYEEM 123
           +  +M
Sbjct: 471 LLHKM 475



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I ++N ++ G   +N   +   L+ K+    L P+  T  IL +  C   R+ +    
Sbjct: 88  PPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAA 147

Query: 85  FSKMLEKGPKANVVTYSCLIDGYF---KSQNMKSAFDVYEEMCENNISPNI--------- 132
            + +L +G   ++VTY+ LI G +   K  +   A +++EEM    + PN+         
Sbjct: 148 MTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHG 207

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              AG+  E+ +L++ M+  G+ P+ +  + L D
Sbjct: 208 FCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLID 241



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 70/126 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ L+ ++   G  P++ TY+T++ G     ++ +A +LF  +    +  +S  + I
Sbjct: 287 VEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVI 346

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            +D  CK G + +A  +F+++     K +  +YS LIDG  K+  ++ A++ ++++ +  
Sbjct: 347 FLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEG 406

Query: 128 ISPNIA 133
           + PN+ 
Sbjct: 407 LQPNVV 412



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---L 58
           L K   ++ A + F QL+  GL+P+++T N +I G+C + ++D+A  LFEK+  ++    
Sbjct: 386 LCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGC 445

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
            P+ IT+  L+  FC+  ++++   +  KM ++
Sbjct: 446 TPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 478


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL LF  +T +G++PD++ YN++I G C+  R  EA  L   +    + PN  TF +L+D
Sbjct: 231 ALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVD 290

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK+G +  A  +   M+  G + +VVTY+ +I G+     M  A  V+E M      P
Sbjct: 291 NFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLP 350

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           N+    +            +A+ L   M+ +G+ PD +  STL
Sbjct: 351 NLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTL 393



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 79/129 (61%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  + G +   G+EPD++TYN++I G+C L+++ +AV++FE +      PN +
Sbjct: 294 KDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLV 353

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI  +CK   ++ A  +  +M+  G   +VVT+S LI G+ K+   ++A +++  M
Sbjct: 354 TYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTM 413

Query: 124 CENNISPNI 132
            E++  PN+
Sbjct: 414 HEHDQHPNL 422



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+K+F  +  +G  P+++TY+++I G+C    +++A+ L  ++    L P+ +T++ LI 
Sbjct: 336 AVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIG 395

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK G+ + A  +F  M E     N+ T + ++DG FK Q    A  ++ EM + N+  
Sbjct: 396 GFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLEL 455

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G+  +A +L+  +   GI  D +  +T+
Sbjct: 456 NVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTM 498



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 35/163 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--------------------- 42
           K  +++ AL L G++ + GL PD++T++T+I G+C   +                     
Sbjct: 364 KTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQ 423

Query: 43  -----LD---------EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                LD         EA+ LF ++  + L+ N + + I++D  C  G+++DA  +FS +
Sbjct: 424 TCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCL 483

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             KG K +VV Y+ +I G  K   +  A ++  +M EN   PN
Sbjct: 484 PSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPN 526



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 20/176 (11%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+       + G +   G++P ++T+ T+I G C+   +  A +  + L  +  + NS
Sbjct: 117 CHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNS 176

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN---VVTYSCLIDGYFKSQNMKSAFDV 119
            T+  +I+  CK G    A +   K+  KG   +   V+ YS ++D   K   +  A ++
Sbjct: 177 YTYGAIINGLCKAGDTSGAILYLEKI--KGRNCDLDVVIAYSTIMDSLCKDGMVCEALNL 234

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  M    I P++             GR  EA  L  +M+R GIMP+    + L D
Sbjct: 235 FSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVD 290



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 58/106 (54%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ LF ++    LE +++ YN ++ G CS  +L++A +LF  L    +K + + +T +I 
Sbjct: 441 AISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIK 500

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             CKEG +DDA  +  KM E G   N  TY+  + G  +  ++  +
Sbjct: 501 GLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRS 546



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 12/147 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           +I Y+TI+   C    + EA+ LF  +T   ++P+ + +  LI   C  GR  +AT +  
Sbjct: 212 VIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLG 271

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
            M+ KG   NV T++ L+D + K   +  A  +   M    + P++              
Sbjct: 272 NMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLS 331

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  +A+++++ M+  G +P+ +  S+L
Sbjct: 332 QMGDAVKVFELMIHKGFLPNLVTYSSL 358



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 13/167 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +++K  H    + L   +   G++PD+ T   II   C LN       +   +  + + P
Sbjct: 80  IIVKMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDP 139

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             +TF  LI+  C EG +  A      + + G ++N  TY  +I+G  K+ +   A    
Sbjct: 140 TVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYL 199

Query: 121 EEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPD 154
           E++   N   ++              G   EA+ L+  M   GI PD
Sbjct: 200 EKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPD 246



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF  L  +G++ D++ Y T+I G C    LD+A  L  K+      PN  T+ +
Sbjct: 473 LNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNV 532

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +    +   +  +T     M  KG  A+  T   LI  YF +    SA  V+
Sbjct: 533 FVRGLLQRYDISRSTKYLLLMKGKGLSADATTTELLIS-YFSANKENSALHVF 584


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 77/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A +L   +   G+ PD+I+YNT++ G+C   R+DEA +L + +  + LKP+
Sbjct: 457 LCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPD 516

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+  +CK  R+DDA  +F +ML KG   +VVTY+ ++ G F++     A ++Y 
Sbjct: 517 KVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYL 576

Query: 122 EMCENNISPNI 132
            M  +    NI
Sbjct: 577 SMINSRTQMNI 587



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD   +N + C Y     +DEA+ +F+K+   +L PN +T+  LIDA CK GR+DDA
Sbjct: 337 GVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDA 396

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
            + F++M+++G   ++  +S L+ G       + A +++ E+ +  I  +          
Sbjct: 397 VLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCN 456

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               GR  EA +L D MLR G+ PD +  +TL D
Sbjct: 457 LCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVD 490



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 13/179 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A KL   +   GL+PD +TYNT++ GYC   R+D+A  LF ++    L P+ +T+ 
Sbjct: 497 RIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYN 556

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++    + GR  +A  ++  M+    + N+ TY+ +I+G  K+  +  AF ++  +C  
Sbjct: 557 TILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSK 616

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           ++  +I             GR  +AM L+ ++   G++PD      +A+ NL   GS E
Sbjct: 617 DLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAE-NLIKEGSLE 674



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 86/151 (56%), Gaps = 12/151 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +LF ++ D+G+  D + +NT++C  C   R+ EA +L + +  V ++P+ I++  L
Sbjct: 429 EKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTL 488

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +D  C  GR+D+A  +   ++  G K + VTY+ L+ GY K++ +  A+ ++ EM    +
Sbjct: 489 VDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGL 548

Query: 129 SPNIA------------GRPTEAMQLYDSML 147
           +P++             GR +EA +LY SM+
Sbjct: 549 TPDVVTYNTILHGLFQTGRFSEAKELYLSMI 579



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +F  + D+G+ P+  TY  +I GY S+ +  E VQ+ ++++   L+P+
Sbjct: 212 LCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPD 271

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + +L+D  CK GR  +A  +F  ++ KG K NV  Y  L+ GY    ++       +
Sbjct: 272 CYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLD 331

Query: 122 EMCENNISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M  N +SP     NI            EAM ++D M +  + P+ +    L D
Sbjct: 332 LMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALID 385



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  LF ++  +GL PD++TYNTI+ G     R  EA +L+  +   + + N  
Sbjct: 529 KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY 588

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I+I+  CK   +D+A  MF  +  K  + ++ T + +I    K    + A D++  +
Sbjct: 589 TYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATI 648

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
               + P++             G   E  +L+ +M  NG  P+  +L+ L  + L 
Sbjct: 649 SAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLH 704



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 17/175 (9%)

Query: 7   HLDAALKLFGQLTDRGLEP-DIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKPNSIT 64
            L      FG +   G    D + ++ ++ G C   R+DEA   L  ++      P+  +
Sbjct: 107 RLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFS 166

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKA---NVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++IL+  FC E R ++A  + S M + G  +   NVVTY+ +IDG  K+Q +  A  V++
Sbjct: 167 YSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQ 226

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M +  + PN              G+  E +Q+   M  +G+ PD  + + L DY
Sbjct: 227 HMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDY 281



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 5   ECHLDAALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           E   + AL+L   + D G     P+++TY T+I G C    +D A  +F+ +    ++PN
Sbjct: 177 EKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPN 236

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T LI  +   G+  +   M  +M   G + +   Y+ L+D   K+     A ++++
Sbjct: 237 NHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFD 296

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +    I PN+             G  +E     D M+ NG+ PD
Sbjct: 297 SVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPD 341



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A K+F  L  + L+ DI T N +I       R ++A+ LF  ++   L P+
Sbjct: 597 LCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPD 656

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ++ +   KEG +++   +FS M E G   N    + L+       ++  A     
Sbjct: 657 VETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLS 716

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 717 KLDEKNFS 724



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 22/164 (13%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA----VQLFEKLT---CVQLKP 60
           L+ ALKLF ++        +  +N ++    S  R   A    V LF ++     +++ P
Sbjct: 32  LNDALKLFDEMLTHARPASVRAFNQLLTA-VSRARCSSASELVVSLFNRMIRECSIKVAP 90

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN-VVTYSCLIDGYFKSQNMKSAFDV 119
           +S T+TILI  FC+ GR+      F  +L+ G + N  V +S L+ G   ++ +  A D+
Sbjct: 91  SSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDI 150

Query: 120 -YEEMCENNISPNIAG------------RPTEAMQLYDSMLRNG 150
               M E   +P++              R  EA++L   M  +G
Sbjct: 151 LLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDG 194



 Score = 40.4 bits (93), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 48/115 (41%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A+ LF  ++  GL PD+ TY  I         L+E  +LF  +      PN
Sbjct: 632 LLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPN 691

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           S     L+      G ++ A    SK+ EK       T S LI  Y + +  + A
Sbjct: 692 SRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYSRGEYQQLA 746


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+++ Y T++ GYC + R+DE + LF ++    +KP++I + I
Sbjct: 552 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 611

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   + GR   A + F +M E G   N  TYS ++ G FK++    A  +++E+   N
Sbjct: 612 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 671

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           +  +       IAG     R  EA  L+ S+ R+G++P
Sbjct: 672 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 74/121 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + GL PD + YN ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 520 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVN 579

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML+KG K + + Y+ +IDG F++     A   + EM E+ I+ 
Sbjct: 580 GYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM 639

Query: 131 N 131
           N
Sbjct: 640 N 640



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++ F Q+ D+G+ PD   Y+ +I G+C+   L +A +L  ++    ++ + + F  
Sbjct: 447 MDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGS 506

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK GR+ DA  +F   +  G   + V Y+ L+DGY     M+ A  V++ M    
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I PN+             GR  E + L+  ML+ GI P  +L + + D
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIID 614



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C +D    LF  +   G+ PDI T+N +I  Y +   LD+A+ +F ++    +KP+ +
Sbjct: 374 KGCLVDMT-DLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 432

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I A C+ G+MDDA   F++M+++G   +   Y CLI G+    ++  A ++  E+
Sbjct: 433 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N +  +I             GR  +A  ++D  +  G+ PD ++ + L D
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 544



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G+  DI+ + +II   C L R+ +A  +F+    V L P+++ + +L+D
Sbjct: 485 AKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 544

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+M+ A  +F  M+  G + NVV Y  L++GY K   +     ++ EM +  I P
Sbjct: 545 GYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604

Query: 131 NI------------AGRPTEAMQLYDSMLRNGI 151
           +             AGR   A   +  M  +GI
Sbjct: 605 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 637



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFT 66
           AL  FGQL   GL  D I  + ++ G+C   R DEA+ +      +L CV   P+  ++ 
Sbjct: 132 ALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCV---PDVFSYN 188

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           IL+ + C +G+   A  +   M E G     +VV Y+ +IDG+FK  ++  A D+++EM 
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248

Query: 125 ENNISPNIAGRPT--------EAMQLYDSMLR----NGIMPDGLLLSTLADYNLQSSGSQ 172
           +  I P++    +         AM   ++ LR     G++PD    + L  Y   S+G  
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI-YGYSSTGQW 307

Query: 173 EHCI 176
           +  +
Sbjct: 308 KEAV 311



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A     Q+ ++G+ PD  TYN +I GY S  +  EAV++F+++    + P+
Sbjct: 266 LCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPD 325

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    L+ + CK G++ +A  +F  M  KG   +V +Y+ +++GY     +    D+++
Sbjct: 326 VVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFD 385

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            M  + I+P+I             G   +AM +++ M  +G+ P
Sbjct: 386 LMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++ YNT+I G+     +++A  LF+++    + P+ +T++ ++ A CK   MD A   
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAF 278

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M+ KG   +  TY+ LI GY  +   K A  V++EM   +I P++            
Sbjct: 279 LRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK 338

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G+  EA  ++D+M   G  PD
Sbjct: 339 YGKIKEARDVFDTMAMKGQNPD 360



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 81/156 (51%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++  + + PD++  NT++   C   ++ EA  +F+ +      P+  ++TI+++
Sbjct: 310 AVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLN 369

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +  +G + D T +F  ML  G   ++ T++ LI  Y     +  A  ++ EM ++ + P
Sbjct: 370 GYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           ++             G+  +AM+ ++ M+  G++PD
Sbjct: 430 HVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  ++ A  LF ++  RG+ PD++TY++++   C    +D+A     ++    + P+
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  +   G+  +A  +F +M  +    +VV  + L+    K   +K A DV++
Sbjct: 291 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFD 350

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M     +P++             G   +   L+D ML +GI PD
Sbjct: 351 TMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 395



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ DIIT NT+I G     R++EA  LF  ++   L P 
Sbjct: 651 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 710

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T++I+I    KEG +++A  MFS M   G + +    + ++    K   +  A     
Sbjct: 711 AVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 770

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 771 KIDERNFS 778



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  +  TY+ ++ G       DEA+ LF++L  + +K + IT   +I    +
Sbjct: 629 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +   G     VTYS +I    K   ++ A D++  M      P+
Sbjct: 689 TRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPD 745



 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P S T+ IL+D   +  R + A   F ++L  G + + +  S L+ G+ +++    A 
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 118 DV 119
           D+
Sbjct: 169 DI 170


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL+L   +  RG  P+++T+N+II G C  +R  EA Q+  ++    L P+ +
Sbjct: 305 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKV 364

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF ILI   CK G  + A+ +F +M+ K  + +V+T+  LIDG  K+  +++A D+ + M
Sbjct: 365 TFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + PN+            +GR  E  +  + M+ +G +P+ +   +L
Sbjct: 425 GNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSL 474



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 19/183 (10%)

Query: 11  ALKLF-GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AL++F G++   G+ P I+TYNTII G C  N L   ++LFE+L      P+ +T+  LI
Sbjct: 64  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLI 123

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--N 127
           D+ CK G +++A  +   M  +G   NVVTYS LI+G  K   +  A ++ +EM     +
Sbjct: 124 DSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 183

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG---IMPDGLLLSTLADYNLQSSGSQ 172
           + PNI                 EA +L  S LR+G   + PD +  STL D   +   + 
Sbjct: 184 VLPNIITYNSFLDGLCKQSMTAEACELMRS-LRDGSLRVSPDTVTFSTLIDGLCKCGQTD 242

Query: 173 EHC 175
           E C
Sbjct: 243 EAC 245



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++AA  +   + + G+ P+++TYN ++ G C   R++E  +  E++      P 
Sbjct: 408 LCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPE 467

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T+  L+ A C+  R DDA  + SK+   G   + VTY+ L+DG +KS   + A  V E
Sbjct: 468 SMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 527

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      P+             +G     M+L   +L  G++PD    S++ D
Sbjct: 528 EMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 53/223 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------- 54
           L K   L+ A +L G ++ RG  P+++TY+ +I G C + R+DEA +L +++T       
Sbjct: 126 LCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVL 185

Query: 55  --------------------------------CVQLKPNSITFTILIDAFCKEGRMDDAT 82
                                            +++ P+++TF+ LID  CK G+ D+A 
Sbjct: 186 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 245

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
                M+  G   NVVTY+ L++G  K+  M+ A  + E M +  ++P++          
Sbjct: 246 N--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 303

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             A R  EA++L   M   G  P+ +  +++ D   +S  S E
Sbjct: 304 CKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE 346



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  P+++TYN ++ G C  ++++ A  + E +    + P+ IT+++L+DAFCK  R+D+A
Sbjct: 253 GYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 312

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF----DVYEEM-CENNISPNI---- 132
             +   M  +G   NVVT++ +IDG  KS     AF     VY  M   + ++ NI    
Sbjct: 313 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAG 372

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              AG   +A  L++ M+   + PD +    L D
Sbjct: 373 ACKAGNFEQASALFEEMVAKNMQPDVMTFGALID 406



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++  Q+ +R L PD +T+N +I G C     ++A  LFE++    ++P+ +TF  LID
Sbjct: 347 AFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALID 406

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+++ A  +   M   G   NVVTY+ L+ G  KS  ++   +  EEM  +   P
Sbjct: 407 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVP 466

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                         A R  +A+QL   +   G  PD +  + L D  L  SG  E  I
Sbjct: 467 ESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVD-GLWKSGKTEQAI 523



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  +   + D+G+ PD+ITY+ ++  +C  +R+DEA++L   +      PN
Sbjct: 268 LCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN 327

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  +ID  CK  R  +A  +  ++  +    + VT++ LI G  K+ N + A  ++E
Sbjct: 328 VVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFE 387

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM   N+ P++            AG+   A  + D M   G+ P+ +  + L     +S 
Sbjct: 388 EMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSG 447

Query: 170 GSQEHC 175
             +E C
Sbjct: 448 RIEEPC 453


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+++ Y T++ GYC + R+DE + LF ++    +KP++I + I
Sbjct: 552 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 611

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   + GR   A + F +M E G   N  TYS ++ G FK++    A  +++E+   N
Sbjct: 612 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 671

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           +  +       IAG     R  EA  L+ S+ R+G++P
Sbjct: 672 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 74/121 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + GL PD + YN ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 520 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVN 579

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML+KG K + + Y+ +IDG F++     A   + EM E+ I+ 
Sbjct: 580 GYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM 639

Query: 131 N 131
           N
Sbjct: 640 N 640



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++ F Q+ D+G+ PD   Y+ +I G+C+   L +A +L  ++    ++ + + F  
Sbjct: 447 MDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGS 506

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK GR+ DA  +F   +  G   + V Y+ L+DGY     M+ A  V++ M    
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I PN+             GR  E + L+  ML+ GI P  +L + + D
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIID 614



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G+  DI+ + +II   C L R+ +A  +F+    V L P+++ + +L+D
Sbjct: 485 AKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 544

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+M+ A  +F  M+  G + NVV Y  L++GY K   +     ++ EM +  I P
Sbjct: 545 GYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604

Query: 131 NI------------AGRPTEAMQLYDSMLRNGI 151
           +             AGR   A   +  M  +GI
Sbjct: 605 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 637



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFT 66
           AL  FGQL   GL  D I  + ++ G+C   R DEA+ +      +L CV   P+  ++ 
Sbjct: 132 ALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCV---PDVFSYN 188

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           IL+ + C +G+   A  +   M E G     +VV Y+ +IDG+FK  ++  A D+++EM 
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248

Query: 125 ENNISPNIAGRPT--------EAMQLYDSMLR----NGIMPDGLLLSTLADYNLQSSGSQ 172
           +  I P++    +         AM   ++ LR     G++PD    + L  Y   S+G  
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI-YGYSSTGQW 307

Query: 173 EHCI 176
           +  +
Sbjct: 308 KEAV 311



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C +D    LF  +   G+ P I T+N +I  Y +   LD+A+ +F ++    +KP+ +
Sbjct: 374 KGCLVDMT-DLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 432

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I A C+ G+MDDA   F++M+++G   +   Y CLI G+    ++  A ++  E+
Sbjct: 433 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N +  +I             GR  +A  ++D  +  G+ PD ++ + L D
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 544



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++ YNT+I G+     +++A  LF+++    + P+ +T++ ++ A CK   MD A   
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAF 278

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M+ KG   +  TY+ LI GY  +   K A  V++EM   +I P++            
Sbjct: 279 LRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK 338

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G+  EA  ++D+M   G  PD
Sbjct: 339 YGKIKEARDVFDTMAMKGQNPD 360



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A     Q+ ++G+ PD  TYN +I GY S  +  EAV++F+++    + P+
Sbjct: 266 LCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPD 325

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    L+ + CK G++ +A  +F  M  KG   +V +Y+ +++GY     +    D+++
Sbjct: 326 VVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFD 385

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            M  + I+P I             G   +AM +++ M  +G+ P
Sbjct: 386 LMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++  + + PD++  NT++   C   ++ EA  +F+ +      P+  ++TI+++
Sbjct: 310 AVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLN 369

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +  +G + D T +F  ML  G    + T++ LI  Y     +  A  ++ EM ++ + P
Sbjct: 370 GYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           ++             G+  +AM+ ++ M+  G++PD
Sbjct: 430 HVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  ++ A  LF ++  RG+ PD++TY++++   C    +D+A     ++    + P+
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  +   G+  +A  +F +M  +    +VV  + L+    K   +K A DV++
Sbjct: 291 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFD 350

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            M     +P++             G   +   L+D ML +GI P
Sbjct: 351 TMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 394



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ DIIT NT+I G     R++EA  LF  ++   L P 
Sbjct: 651 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 710

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T++I+I    KEG +++A  MFS M   G + +    + ++    K   +  A     
Sbjct: 711 AVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 770

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 771 KIDERNFS 778



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  +  TY+ ++ G       DEA+ LF++L  + +K + IT   +I    +
Sbjct: 629 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +   G     VTYS +I    K   ++ A D++  M      P+
Sbjct: 689 TRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 745



 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P S T+ IL+D   +  R + A   F ++L  G + + +  S L+ G+ +++    A 
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 118 DV 119
           D+
Sbjct: 169 DI 170


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KL  ++ D+G +PD++TYN +I G C   RLDEA++    +     +PN I
Sbjct: 259 KESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVI 318

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  I++ + C  GR  DA    ++M+ KG   +VVT++ LI+   +   +  A DV E+M
Sbjct: 319 THNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKM 378

Query: 124 CENNISPN-IAGRP-----------TEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++  +PN ++  P             A++  D M+  G  PD +  +TL
Sbjct: 379 PQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTL 428



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+++  QL  +G  P +ITYNT+I G   + + D+A++L +++    LKP+
Sbjct: 432 LCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPD 491

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+    +EG++D+A   F  + E G K N +TY+ ++ G  K++    A D   
Sbjct: 492 IITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLA 551

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQSSGSQEHCI 176
            M      P      T  M L + +   G+  + L LL+ L    +    S E  +
Sbjct: 552 YMVARGCKPT----ETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVV 603



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 13/161 (8%)

Query: 17  QLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
           QL DR  + PD++TYNTI+   C   +L EA+++ ++    +  P+ IT+TILI+A CKE
Sbjct: 201 QLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKE 260

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--- 132
             +  A  +  +M +KG K +VVTY+ LI+G  K   +  A      M      PN+   
Sbjct: 261 SGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITH 320

Query: 133 ---------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                     GR  +A +    M+R G  P  +  + L ++
Sbjct: 321 NIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINF 361



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 69/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A++    +  RG  PDI+TYNT++   C   ++D AV++  +L      P 
Sbjct: 397 LCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPV 456

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  +ID   K G+ DDA  +  +M  KG K +++TYS L+ G  +   +  A   + 
Sbjct: 457 LITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFH 516

Query: 122 EMCENNISPN 131
           ++ E  + PN
Sbjct: 517 DLEEMGVKPN 526



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+++  +   R   PD+ITY  +I   C  + + +A++L +++     KP+ +T+ +
Sbjct: 228 LKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNV 287

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CKEGR+D+A    + M   G + NV+T++ ++     +     A     EM    
Sbjct: 288 LINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG 347

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
            SP++             G    A+ + + M ++G  P+ L
Sbjct: 348 CSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSL 388



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +  ++   G  P+ ++YN ++   C   +++ A++  + +      P+ +T+  L+ 
Sbjct: 371 AIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLT 430

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK+G++D A  + +++  KG    ++TY+ +IDG  K      A  + +EM    + P
Sbjct: 431 ALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKP 490

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I             G+  EA+  +  +   G+ P+ +  +++
Sbjct: 491 DIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSI 533



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L+   K    +  RG  PDII   ++I G C   +  +A ++ E L      P+
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ +LI  +CK G +  A  +  +M       +VVTY+ ++     S  +K A +V +
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              +    P++                 +AM+L D M   G  PD
Sbjct: 237 RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPD 281



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           L+E  +  E + C    P+ I  T LI   CK G+   AT +   + + G   +V+TY+ 
Sbjct: 126 LEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNV 185

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           LI GY K+  + SA  + + M   ++SP++            +G+  EAM++ D  ++  
Sbjct: 186 LISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRE 242

Query: 151 IMPDGLLLSTLADYNLQSSG 170
             PD +  + L +   + SG
Sbjct: 243 CYPDVITYTILIEATCKESG 262


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L  ++  + + PDIITY ++I G   L++ ++   LF ++  + + P+  
Sbjct: 225 KDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVC 284

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  +ID  CKEG+++DA  + + M+EKG + N +TY+ ++DGY     M  A  +++ M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSM 344

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  I P+I              +  +AMQL+  + +NG+ P  +  S L
Sbjct: 345 IDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVL 394



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 85/154 (55%), Gaps = 9/154 (5%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  + D+G+EPDII+Y  +I GY    ++D+A+QLF +++   LKP+ +T ++L+ 
Sbjct: 337 ARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLR 396

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              + GR + A + F +M   G   N+ T+  L+ GYFK+  ++ A   + ++       
Sbjct: 397 GLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDT 456

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           NI        Q+Y +++ NG+  +G L    A +
Sbjct: 457 NI--------QIYTAVI-NGLCKNGKLDKAHATF 481



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L  E  +  A+ LF +L    + EPD + Y T++ G C      +A  L   +     KP
Sbjct: 152 LFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKP 211

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++  + I+IDAFCK+G +D AT + ++M +K    +++TY+ LIDG  K    +    ++
Sbjct: 212 DTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLF 271

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EM   NI P++             G+  +A ++   M+  G+ P+ +  + + D
Sbjct: 272 LEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMD 326



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A ++   + ++G+EP+ ITYN ++ GYC   ++  A ++F+ +    ++P+
Sbjct: 293 LCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPD 352

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++T LI+ + ++ +MD A  +F ++ + G K ++VT S L+ G F+    + A   ++
Sbjct: 353 IISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFD 412

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM      PN+    T    L     +NG++ + +
Sbjct: 413 EMQAAGHIPNLYTHCT----LLGGYFKNGLVEEAM 443



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 66/122 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+  F +L  R  + +I  Y  +I G C   +LD+A   FEKL  + L P+ IT+T 
Sbjct: 439 VEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTA 498

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +C+EG +D+A  M  KM + G   +  TY+ ++ G+F+S  +       +E+   +
Sbjct: 499 MISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKS 558

Query: 128 IS 129
            S
Sbjct: 559 FS 560



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 12/183 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +++  +D A++LF +++  GL+P I+T + ++ G   + R + A   F+++      PN 
Sbjct: 364 VEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNL 423

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T   L+  + K G +++A   F K+  +    N+  Y+ +I+G  K+  +  A   +E+
Sbjct: 424 YTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEK 483

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +    + P++             G   EA  +   M  NG +PD    + +     +SS 
Sbjct: 484 LPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSK 543

Query: 171 SQE 173
             E
Sbjct: 544 VSE 546



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A   F +L   GL PD+ITY  +I GYC    LDEA  +  K+      P+
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPD 527

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           + T+ +++  F +  ++ +      ++  K       T   L+D
Sbjct: 528 NRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMD 571



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 57/121 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  LF Q+      P  ++++ ++     +      V +F ++  +++  ++   + 
Sbjct: 53  LDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++++ C   R D    + +   +KG   N VT++ LI G F    +K A  +++++   N
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 128 I 128
           I
Sbjct: 173 I 173


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L   L+ + ++   GL+P++++Y+T++  +C    + +A++ +  +  V L PN  T+T 
Sbjct: 216 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 275

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CK G + DA  + ++ML+ G + NVVTY+ LIDG   ++ MK A +++ +M    
Sbjct: 276 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 335

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN+A                 A++L + +   GI PD LL  T 
Sbjct: 336 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 381



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++AA  LF ++  RGL PD +TYN++I G+  + RLD+ V  FE++  +  +P+ I
Sbjct: 142 KEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 201

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK G++      + +M   G K NVV+YS L+D + K   M+ A   Y +M
Sbjct: 202 TYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 261

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + PN              G  ++A +L + ML+ G+  + +  + L D
Sbjct: 262 RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALID 313



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 13/179 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K  ++D AL+L  +L  RG++PD++ Y T I G CSL +++ A  +  ++    +K N
Sbjct: 350 FVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKAN 409

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+ +T L+DA+ K G   +   +  +M E   +  VVT+  LIDG  K++ +  A D + 
Sbjct: 410 SLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFN 469

Query: 122 EMCEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            +  +  +  N A             +   A  L++ M++ G++PD    ++L D N +
Sbjct: 470 RISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFK 528



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   + F  +   G  P + TYN +I   C    ++ A  LFE++    L P+++T+  +
Sbjct: 112 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 171

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K GR+DD    F +M +   + +V+TY+ LI+ + K   +    + Y EM  N +
Sbjct: 172 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 231

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            PN+    T            +A++ Y  M R G++P+    ++L D N
Sbjct: 232 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 280



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+K +  +   GL P+  TY ++I   C +  L +A +L  ++  V ++ N +
Sbjct: 247 KEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVV 306

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  C   RM +A  +F KM   G   N+ +Y+ LI G+ K++NM  A ++  E+
Sbjct: 307 TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 366

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               I P+       I G     +   A  + + M   GI  + L+ +TL D   +S   
Sbjct: 367 KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 426

Query: 172 QE 173
            E
Sbjct: 427 TE 428



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 69/127 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A +LFG++   G+ P++ +YN +I G+     +D A++L  +L    +KP+ + + 
Sbjct: 320 RMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 379

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             I   C   +++ A ++ ++M E G KAN + Y+ L+D YFKS N      + +EM E 
Sbjct: 380 TFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKEL 439

Query: 127 NISPNIA 133
           +I   + 
Sbjct: 440 DIEVTVV 446



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI    L+ A++ F ++    + P   + N ++  +  L + D+  + F+ +     +P
Sbjct: 69  VLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARP 128

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              T+ I+ID  CKEG ++ A  +F +M  +G   + VTY+ +IDG+ K   +      +
Sbjct: 129 TVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFF 188

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM +    P++             G+    ++ Y  M  NG+ P+ +  STL D
Sbjct: 189 EEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVD 243



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 16/182 (8%)

Query: 8   LDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +  A+  F +++ D GL+ +   +  +I G C  N+++ A  LFE++    L P+   +T
Sbjct: 461 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 520

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D   K+G + +A  +  KM E G K +++ Y+ L+ G      ++ A    EEM   
Sbjct: 521 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 580

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMP---DGLLLSTLADYNLQSSGS 171
            I P+              G   EA++L   ++++ ++    D  L +  +D NL SS  
Sbjct: 581 GIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSDNDNALPNIYSDQNLVSSRE 640

Query: 172 QE 173
            E
Sbjct: 641 HE 642


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L  ++  + + PDI TY+T+I   C L++ +    LF ++  + + PN  
Sbjct: 225 KDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVC 284

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  +ID  CKEG+++DA  +   M+EKG   +V+TY+ +IDGY     +  A ++++ M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMP 153
              +I PNI              +  EAMQ+   + + G+ P
Sbjct: 345 INKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKP 386



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A ++   + ++G++PD+ITYN II GY    ++D A ++F+ +    ++PN
Sbjct: 293 LCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPN 352

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++ ILI+ + ++ ++D+A  +  ++ +KG K ++VT + L+ G F+    KSA + ++
Sbjct: 353 IISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFD 412

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM      P++    T    L     +NG++ + +
Sbjct: 413 EMLSAGHIPDLYTHCT----LLGGYFKNGLVEEAM 443



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 14/180 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L  E  +  A+ LF +L    + EP+ + Y T++ G C      +A  L   +     KP
Sbjct: 152 LFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKP 211

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+  ++I+IDAFCK+G +D AT + ++M +K    ++ TYS LID   K    ++   ++
Sbjct: 212 NTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLF 271

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQ 167
            EM   NI PN+             G+  +A ++   M+  G+ PD +  + + D Y L+
Sbjct: 272 LEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLR 331



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++F  + ++ +EP+II+YN +I GY    ++DEA+Q+  +++   LKP+ +T  +
Sbjct: 334 VDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+    + GR   A   F +ML  G   ++ T+  L+ GYFK+  ++ A   + ++    
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
              NI             G+  +A   ++ +   G+ PD
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPD 492



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+  F +L  R  + +I  Y  +I G C   +LD+A   FEKL  + L P+ IT+T 
Sbjct: 439 VEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTA 498

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +C+EG +D+A  M  KM + G  A+  TY+ ++ G+ +S  +       EE+   +
Sbjct: 499 MISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKS 558

Query: 128 IS 129
            S
Sbjct: 559 FS 560



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A   F ++   G  PD+ T+ T++ GY     ++EA+  F KL   +   N   +T +I
Sbjct: 406 SAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVI 465

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           D  CK G++D A   F K+   G   +V+TY+ +I GY +   +  A D+  +M +N
Sbjct: 466 DGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDN 522



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +D A+++  +++ +GL+P I+T N ++ G   L R   A   F+++      P+  
Sbjct: 365 RQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLY 424

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   L+  + K G +++A   F K+  +    N+  Y+ +IDG  K+  +  A   +E++
Sbjct: 425 THCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKL 484

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               + P++             G   EA  +   M  NG + D    + +    L+S+  
Sbjct: 485 PLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKV 544

Query: 172 QE 173
            E
Sbjct: 545 SE 546



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  LF Q+      P +++++ ++     +      V LF ++  +++  +    +I
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++++ C   R D    + +   +KG   N V ++ L+ G F    +K A  +++++   N
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVREN 172

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           I       P E M  Y +++ NG+   G          L   GS +
Sbjct: 173 IC-----EPNEVM--YGTVM-NGLCKKGHTQKAFDLLRLMEQGSTK 210



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A   F +L   GL PD+ITY  +I GYC    LDEA  +  K+       +
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLAD 527

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           + T+ +++  F +  ++ +      ++  K       T   L+D
Sbjct: 528 NRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571



 Score = 43.9 bits (102), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+   H  + + LF ++    +       + ++   C ++R D    +        +  N
Sbjct: 82  LVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFN 141

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + F  L+     E ++ DA  +F K++ +   + N V Y  +++G  K  + + AFD+ 
Sbjct: 142 QVIFNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLL 201

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             M + +  PN              G    A  L + M +  I PD    STL D
Sbjct: 202 RLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLID 256


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 77/128 (60%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+ A  L G +   G+ PD+ TY   I G C   R+ +A+++FE++    L PN++
Sbjct: 161 KASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 220

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             T LIDA CKEG +     +  +M  +G KA++V Y+ L++G+ + ++MK+A D+ EEM
Sbjct: 221 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 280

Query: 124 CENNISPN 131
            ++ + P+
Sbjct: 281 RKDGLKPD 288



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 4/153 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  + A L+L  ++  RG++ D++ YN ++ G+C +  +  A  + E++    LKP+ +
Sbjct: 231 KEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKV 290

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG +D A  M  +M ++G   + VTY+ LI G  K+     A  +  EM
Sbjct: 291 TYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEM 350

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
            E  + P+     T    + D+  +NG +  G 
Sbjct: 351 MEAGLQPD----NTTYTMVIDAFCKNGDVKTGF 379



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + AA  +  ++   GL+PD +TY T+I G C    LD A+++ ++++   +  + +T+T 
Sbjct: 270 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTA 329

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K GR  DA  +  +M+E G + +  TY+ +ID + K+ ++K+ F   +EM    
Sbjct: 330 LISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 389

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +P I             G+   A  L ++ML  G+ P+ +  + L D
Sbjct: 390 KNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLD 437



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A+++  +++D G+  D +TY  +I G     R  +A ++  ++    L+P++ 
Sbjct: 301 KEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNT 360

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T++IDAFCK G +        +M  KG    +VTY+ +++G+     MK+A  +   M
Sbjct: 361 TYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM 420

Query: 124 -----CENNISPNI 132
                C N+I+ NI
Sbjct: 421 LNIGVCPNDITYNI 434



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +    K   ++ ++G  P I+TYN ++ G+CSL ++  A  L   +  + + PN I
Sbjct: 371 KNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDI 430

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           T+ IL+D  CK G++ D   + S    KG  ++   Y+ LI+ + K ++ KS  D
Sbjct: 431 TYNILLDGHCKHGKVRDTEELKS---AKGMVSDFGVYTSLINEFVKKKSAKSYHD 482



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   +  L D G+ P+   +N ++       +L  A  +F+++    ++P  +TF  L+ 
Sbjct: 98  AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 157

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   +++A  +   M + G   +V TY   I G  K+  ++ A +++EEMCE  ++P
Sbjct: 158 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 217

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N              G  T  ++L   M   G+  D
Sbjct: 218 NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKAD 253



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 40  LNRLD---EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
           +NRL    EA   +  L    + P +  F +L+    + G++  A  +F +ML +G +  
Sbjct: 89  MNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPT 148

Query: 97  VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYD 144
           VVT++ L+ G  K+ ++ +A  +   M +  I+P++             GR  +AM++++
Sbjct: 149 VVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFE 208

Query: 145 SMLRNGIMPDGLLLSTLAD 163
            M   G+ P+ ++L+TL D
Sbjct: 209 EMCERGLNPNTVVLTTLID 227


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++ + + A  L   +   GL PD +TY +II G+     L +A ++F ++    + P+
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPS 564

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+LI A   +  +D A M FSKMLEK   ANV+TY+ +I+G   ++ M  A+  ++
Sbjct: 565 VVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFD 624

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  I PN              G   EA++LY  ML   I PD    S  
Sbjct: 625 EMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVF 676



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A  +  ++   G  PD+ITYN  +   C     +EA  L E +    L P+ +T+T +I
Sbjct: 478 VAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSII 537

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           + F K G +  A  +F++ML KG   +VVTY+ LI  +   Q +  AF  + +M E ++ 
Sbjct: 538 NGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVP 597

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            N+              R  EA + +D M   GI+P+    + L +
Sbjct: 598 ANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILIN 643



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A  LF +L  R L P +ITYNT+I G C    LD A++L +++T   L P+  T+TI
Sbjct: 371 ISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++   K G +  A   F++ML KG K +   Y+  I G  K  +   AF + EEM    
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG 490

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G   EA  L ++M+ +G++PD +  +++ +
Sbjct: 491 FPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIIN 538



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  ++G +   G++P ++TYNT++  YC   R+D+A++L  ++      PN +T+ +
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++   K+G ++ A  +  +ML  G   +  TY+ LI+G+ +      AFD+ EEM    
Sbjct: 256 LVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRR 315

Query: 128 ISPNIAGRPTEAMQL------------YDSMLRNGIMPDGLLLSTL 161
             P ++   T    L            +  ML++   PD +  ++L
Sbjct: 316 AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSL 361



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  +      PDI+++N+++ GYC    + EA  LF++L C  L P  IT+  LI   C 
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--- 131
            G +D A  +  +M ++G   ++ TY+ L++G FK   +  A   + EM    + P+   
Sbjct: 403 WGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFA 462

Query: 132 ----IAGR-----PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
               I G       + A  + + ML  G  PD +  +       Q    +E C
Sbjct: 463 YNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEAC 515



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 68/127 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A   F ++  +GL+PD   YNT I G   +     A  + E++      P+ IT+ 
Sbjct: 440 YVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYN 499

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + + A C++G  ++A  +   M+  G   + VTY+ +I+G+ K+ +++ A +V+ EM   
Sbjct: 500 VFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK 559

Query: 127 NISPNIA 133
            ++P++ 
Sbjct: 560 GVAPSVV 566



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L +F ++   GL PD+   N I+      N L +A  ++  +    +KP  +T+  ++D+
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NIS 129
           +CKEGR+D A  + S+M E+G   N VTY+ L++G  K   ++ A  + EEM  +  N+S
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284

Query: 130 -----PNI-----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
                P I      G   EA  L + M+     P      TL+ YN
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP------TLSTYN 324



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A   F ++ ++ +  ++ITYN II G C   R+DEA + F+++    + PN  ++TI
Sbjct: 581 LDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTI 640

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  C  G  ++A  ++ +ML++  + +  T+S  +      +N+   + V+   C  +
Sbjct: 641 LINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFL------KNLHRDYQVHAVQCVES 694

Query: 128 ISPNI 132
           +  N+
Sbjct: 695 LIQNV 699



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D AL+L  ++ +RG  P+ +TYN ++ G      L++A  L E++    L  ++ 
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FC++G   +A  +  +M+ +     + TY+ L+ G  K   +      + +M
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++  +P+I             G  +EA  L+D +    ++P  +  +TL
Sbjct: 347 LKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTL 396



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  L  ++ + GL     TYN +I G+C      EA  L E++   +  P 
Sbjct: 260 LSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPT 319

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+   CK  ++    + FS ML+     ++V+++ L+ GY ++  +  AF +++
Sbjct: 320 LSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFD 379

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+   ++ P +             G    A++L   M   G+ PD    + L +
Sbjct: 380 ELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVN 433


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+  +D AL++F +L +  L PD   YN ++ G    NR+DEA +L + +    + P+
Sbjct: 678 LVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPD 737

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T L+D   K GR+++A  MF+KM E+G + +VV Y+ L+D   K   +  A  ++ 
Sbjct: 738 LFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFR 797

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M +    P++             GR  EA   +++ +  G  P+  + S+L D
Sbjct: 798 AMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLID 851



 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K+  +D AL+LF ++  R   P+I+TYN ++ G     RL+ A +L E++  V   P+ +
Sbjct: 855  KKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLV 914

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+ ILID   K G +D+A   F +M EKG   +V+T++ LI+   K   +  A ++++ M
Sbjct: 915  TYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSM 974

Query: 124  CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             E   +P++            AG+  EA  ++  M   G MPDG+ +  +
Sbjct: 975  EEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  +F ++T+ G EPD++ Y +++       +L  A+ +F  +   +  P+
Sbjct: 748 LGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPD 807

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID+  KEGR+++A   F   + KG   NV  YS LID + K   +  A +++E
Sbjct: 808 VVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFE 867

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      PNI            AGR   A +L + M + G +PD +  + L D
Sbjct: 868 EMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILID 921



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 16/188 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+K     +A+ +FG+L    ++PD  T+   +  +    RLD A +  +++    + P
Sbjct: 261 LLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDP 320

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              TFT+LIDA  K G +D+A   F+ M       NVVTY+ L++G  K+  ++ A +V+
Sbjct: 321 GVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVF 380

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLADY 164
            EM ENN SP+             AG    A  L+  M   G++P+     +++S L   
Sbjct: 381 VEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKA 440

Query: 165 NLQSSGSQ 172
             Q    Q
Sbjct: 441 GRQPEAWQ 448



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL +FG++ + G+EP +  Y T++       ++D A+Q+F +L    L P+
Sbjct: 643 LCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPD 702

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  + I+++   K  R+D+A  +   M  +    ++ TY+ L+DG  KS  ++ AF+++ 
Sbjct: 703 TFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFT 762

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M E    P++             G+ + A+ ++ +M +   +PD +  S+L D
Sbjct: 763 KMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLID 816



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 95/186 (51%), Gaps = 12/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I   H+D A+KL   +      P ++TY T++ G     RLDEAV L  ++     +P+
Sbjct: 538 FIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPS 597

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ L+ +F K  + +++  +F +M+ KG  A+V TYS +I+   KS ++  A DV+ 
Sbjct: 598 VVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFG 657

Query: 122 EMCENNISPNIAGRPTE------------AMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M E  + P +    T             A+Q+++ +  + ++PD  + + + +  ++S+
Sbjct: 658 RMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSN 717

Query: 170 GSQEHC 175
              E C
Sbjct: 718 RVDEAC 723



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  AL++F Q+   G  P    YN ++           AV +F KL   +++P++ TF 
Sbjct: 232 NVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFR 291

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I + +F + GR+D A     +M++ G    V T++ LID   KS N+  A   +  M   
Sbjct: 292 IFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNL 351

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             SPN+            AGR  EA +++  M  N   PD +  +TL D
Sbjct: 352 RCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLID 400



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  ++D A K F  + +    P+++TY T++ G     RL+EA ++F ++      P+
Sbjct: 332 LVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPD 391

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I +  LID   K G  D A  +F +M ++G   N+ TY+ +I    K            
Sbjct: 392 AIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGK------------ 439

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      AGR  EA QL+  +   G +PD    +TL D
Sbjct: 440 -----------AGRQPEAWQLFHDLKEQGAVPDVFTYNTLID 470



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A+ L  ++  +G EP ++TY++++  +   ++ +E++ LF+++       +
Sbjct: 573 LGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVAD 632

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++++I+  CK   +D A  +F +M E+G +  +  Y  L+    K + +  A  ++ 
Sbjct: 633 VSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFN 692

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E+ E+++ P+             + R  EA +L DSM    I+PD    ++L D  L  S
Sbjct: 693 ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLD-GLGKS 751

Query: 170 GSQEHC 175
           G  E  
Sbjct: 752 GRLEEA 757



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A   F     +G  P++  Y+++I  +     +D A++LFE++   Q  PN
Sbjct: 818 LGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPN 877

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+    K GR++ A  +  +M + G   ++VTY+ LIDG  K   +  A   ++
Sbjct: 878 IVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFK 937

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E  I P++              +  EA +L+DSM   G  P  +  + L D
Sbjct: 938 RMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLID 991



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 61/106 (57%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ITYNT++  +     +DEAV+L E +   +  P  +T+T L+D   K GR+D+A  +  +
Sbjct: 529 ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLRE 588

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           M ++G + +VVTYS L+  ++K    + +  +++EM       +++
Sbjct: 589 MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVS 634



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 61/126 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A ++F ++ +    PD I YNT+I G       D A  LF+++    L PN
Sbjct: 367 LAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPN 426

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I    K GR  +A  +F  + E+G   +V TY+ LID   K   M     + +
Sbjct: 427 LRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIK 486

Query: 122 EMCENN 127
           EM E  
Sbjct: 487 EMVEKG 492



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 43/203 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  LF ++ DRGL P++ TYN +I       R  EA QLF  L      P+
Sbjct: 402 LGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPD 461

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV------------------------ 97
             T+  LID   K G+MD    +  +M+EKG +  +                        
Sbjct: 462 VFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSL 521

Query: 98  -------VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTE 138
                  +TY+ L+  +  + ++  A  + E M ++   P +            AGR  E
Sbjct: 522 GFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDE 581

Query: 139 AMQLYDSMLRNGIMPDGLLLSTL 161
           A+ L   M + G  P  +  S+L
Sbjct: 582 AVSLLREMEKQGCEPSVVTYSSL 604



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 43/187 (22%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-----CVQLKPNS--- 62
           A +LF  L ++G  PD+ TYNT+I       ++D+ + + +++      C+  + ++   
Sbjct: 446 AWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGH 505

Query: 63  -----------------------ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
                                  IT+  L+ AF   G +D+A  +   M +      VVT
Sbjct: 506 EGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVT 565

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSML 147
           Y+ L+DG  K+  +  A  +  EM +    P++              +  E++ L+D M+
Sbjct: 566 YTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMV 625

Query: 148 RNGIMPD 154
           R G + D
Sbjct: 626 RKGCVAD 632



 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/179 (16%), Positives = 77/179 (43%), Gaps = 12/179 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA +++   +   G    +    +++  + S N +  A+++F ++      P++  +  +
Sbjct: 199 DAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFV 258

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++   K G    A ++F K+ +   + +  T+   +  + +S  +  A +  +EM ++ I
Sbjct: 259 LELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGI 318

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            P +            +G   EA + ++ M      P+ +  +TL +   ++   +E C
Sbjct: 319 DPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEAC 377


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A +L  ++  RG+ PD +TY ++I G+C  N+LD+A  + + +      PN
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILI+ +CK   +DD   +F KM  +G  A+ VTY+ LI G+ +   ++ A ++++
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSM 146
           EM    + P+I             G P +A+++++ +
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A  LF ++  +G + DII Y T+I G+C   R D+  +L   +   ++ P+
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ LID F KEG++ +A  +  +M+++G   + VTY+ LIDG+ K   +  A  + +
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      PNI            A    + ++L+  M   G++ D +  +TL
Sbjct: 377 LMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 94/179 (52%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A  +   +  +G  P+I T+N +I GYC  N +D+ ++LF K++   +  +++
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC+ G+++ A  +F +M+ +  + ++V+Y  L+DG   +   + A +++E++
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            ++ +  +I            A +  +A  L+ S+   G+ PD      +  YN+   G
Sbjct: 484 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD------VKTYNIMIGG 536



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL+L  ++ + G +P +IT N ++ G C   ++ +AV L +++     +PN +T
Sbjct: 155 EGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVT 214

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  ++   CK G+   A  +  KM E+  K + V YS +IDG  K  ++ +AF+++ EM 
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 274

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 +I            AGR  +  +L   M++  I PD +  S L D
Sbjct: 275 IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALID 325



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 67/121 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L  ++ +R ++ D + Y+ II G C    LD A  LF ++     K + I +T LI 
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC  GR DD   +   M+++    +VV +S LID + K   ++ A ++++EM +  ISP
Sbjct: 291 GFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISP 350

Query: 131 N 131
           +
Sbjct: 351 D 351



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 16/171 (9%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +LF ++  R + PDI++Y  ++ G C     ++A+++FEK+   +++ +   + I
Sbjct: 438 LEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNI 497

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   ++DDA  +F  +  KG K +V TY+ +I G  K  ++  A  ++ +M E+ 
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDG----LLLSTLA 162
            SPN              G  T++ +L + + R G   D       LSTLA
Sbjct: 558 HSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLA 608



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L L  Q+  +G+  ++ T + +I   C   +L  A     K+  +  +P+++TF+ L
Sbjct: 89  DLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTL 148

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C EGR+ +A  +  +M+E G K  ++T + L++G   +  +  A  + + M E   
Sbjct: 149 INGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGF 208

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN             +G+   AM+L   M    I  D +  S + D
Sbjct: 209 QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIID 255



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 24/160 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTII---------------------CGY-CS 39
           L K+  L  A  LF ++ + G  P+  TYN +I                     CG+   
Sbjct: 537 LCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVD 596

Query: 40  LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE--GRMDDATMMFSKMLEKGPKANV 97
            + L  A+    ++     +P+  TFT L+  FC E    + DA  +F  M   G K NV
Sbjct: 597 ASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNV 656

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
           VTY+ +I G      +     V ++M E    PN   + T
Sbjct: 657 VTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKST 696



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLD--EAVQLFEKLTCVQLKPNSITF 65
           L  AL    ++   G EPD+ T+ T++  +C        +A  LF+ +  +  KPN +T+
Sbjct: 600 LRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTY 659

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +I        +     +  +M E+G + N VT S  I G  K     SA  +  +M  
Sbjct: 660 NTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMEN 719

Query: 126 NN 127
           +N
Sbjct: 720 DN 721



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF ++T     P +I ++ +        + D  + L +++    +  N  T +I+
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C+  ++  A     K+++ G + + VT+S LI+G      +  A ++ + M E   
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            P +             G+ ++A+ L D M+  G  P+
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 77/128 (60%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+ A  L G +   G+ PD+ TY   I G C   R+ +A+++FE++    L PN++
Sbjct: 289 KASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 348

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             T LIDA CKEG +     +  +M  +G KA++V Y+ L++G+ + ++MK+A D+ EEM
Sbjct: 349 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 408

Query: 124 CENNISPN 131
            ++ + P+
Sbjct: 409 RKDGLKPD 416



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 4/153 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  + A L+L  ++  RG++ D++ YN ++ G+C +  +  A  + E++    LKP+ +
Sbjct: 359 KEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKV 418

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  CKEG +D A  M  +M ++G   + VTY+ LI G  K+     A  +  EM
Sbjct: 419 TYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEM 478

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
            E  + P+     T    + D+  +NG +  G 
Sbjct: 479 MEAGLQPD----NTTYTMVIDAFCKNGDVKTGF 507



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + AA  +  ++   GL+PD +TY T+I G C    LD A+++ ++++   +  + +T+T 
Sbjct: 398 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTA 457

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K GR  DA  +  +M+E G + +  TY+ +ID + K+ ++K+ F   +EM    
Sbjct: 458 LISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 517

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +P I             G+   A  L ++ML  G+ P+ +  + L D
Sbjct: 518 KNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLD 565



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A+++  +++D G+  D +TY  +I G     R  +A ++  ++    L+P++ 
Sbjct: 429 KEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNT 488

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T++IDAFCK G +        +M  KG    +VTY+ +++G+     MK+A  +   M
Sbjct: 489 TYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM 548

Query: 124 -----CENNISPNI 132
                C N+I+ NI
Sbjct: 549 LNIGVCPNDITYNI 562



 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +    K   ++ ++G  P I+TYN ++ G+CSL ++  A  L   +  + + PN I
Sbjct: 499 KNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDI 558

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           T+ IL+D  CK G++ D   + S    KG  ++   Y+ LI+ + K ++ KS  D
Sbjct: 559 TYNILLDGHCKHGKVRDTEELKS---AKGMVSDFGVYTSLINEFVKKKSAKSYHD 610



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 61/121 (50%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   +  L D G+ P+   +N ++       +L  A  +F+++    ++P  +TF  L+ 
Sbjct: 226 AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 285

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   +++A  +   M + G   +V TY   I G  K+  ++ A +++EEMCE  ++P
Sbjct: 286 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 345

Query: 131 N 131
           N
Sbjct: 346 N 346



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 40  LNRLD---EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
           +NRL    EA   +  L    + P +  F +L+    + G++  A  +F +ML +G +  
Sbjct: 217 MNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPT 276

Query: 97  VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYD 144
           VVT++ L+ G  K+ ++ +A  +   M +  I+P++             GR  +AM++++
Sbjct: 277 VVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFE 336

Query: 145 SMLRNGIMPDGLLLSTLAD 163
            M   G+ P+ ++L+TL D
Sbjct: 337 EMCERGLNPNTVVLTTLID 355


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  H+  A++    + + G +PDI+TYNT+I G C   ++ EA QL E+     L PN  
Sbjct: 302 KHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKF 361

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++T LI A+CK+G  D A+    +M E+G K ++VTY  L+ G   +  +  A  + E+M
Sbjct: 362 SYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKM 421

Query: 124 CENNISPNIAG-------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  + P+ AG             +   A  L   ML   ++PD  + +TL D
Sbjct: 422 LERGVFPD-AGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVD 473



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+   KL      +G  P+II YNT+I GYC    ++ A  LF +L      P 
Sbjct: 195 LCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPT 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+ FCK+G       +  +M  +G   NV  Y+ +ID  +K  ++  A +  E
Sbjct: 255 VETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIE 314

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M E    P+I             G+ +EA QL +  L  G+MP+
Sbjct: 315 GMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPN 359



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   D A     ++T+RG +PD++TY  ++ G      +D A+ + EK+    + P++ 
Sbjct: 372 KQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAG 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            + IL+   CK+ ++  A ++ ++ML++    +   Y+ L+DG+ ++ N+  A  ++E  
Sbjct: 432 IYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELT 491

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  ++P I G               +AM   + M +  + PD    ST+ D
Sbjct: 492 IEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVID 543



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L AA  L  ++ D+ + PD   Y T++ G+     LDEA +LFE      + P 
Sbjct: 440 LCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPG 499

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I  +CK G M DA    ++M ++    +  TYS +IDGY K  ++  A  ++ 
Sbjct: 500 IVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFR 559

Query: 122 EMCENNISPNI 132
           EM +    PN+
Sbjct: 560 EMVKMKCKPNV 570



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    +D AL +  ++ +RG+ PD   YN ++ G C   +L  A  L  ++    + P+
Sbjct: 405 LVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPD 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  L+D F + G +D+A  +F   +EKG    +V Y+ +I GY K   MK A     
Sbjct: 465 AFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACIN 524

Query: 122 EMCENNISPN 131
            M + +++P+
Sbjct: 525 RMKKRHLAPD 534



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+    A  +L  ++  RGL  ++  YNTII        + +AV+  E +     KP+ +
Sbjct: 267 KKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIV 326

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   C++G++ +A  +  + L KG   N  +Y+ LI  Y K      A +   EM
Sbjct: 327 TYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEM 386

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            E    P+            +AG    A+ + + ML  G+ PD  +      YN+  SG
Sbjct: 387 TERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGI------YNILMSG 439



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 54/97 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+  +LD A KLF    ++G+ P I+ YN +I GYC    + +A+    ++    L P+
Sbjct: 475 FIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPD 534

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
             T++ +ID + K+  +D A  MF +M++   K NV+
Sbjct: 535 EFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVM 571



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 15/108 (13%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD+I  N+++     L R++ A     K TC           I++   CKEG++++   +
Sbjct: 163 PDVIACNSLLNMLVKLGRIEIA----RKFTC-----------IMVKGLCKEGKLEEGRKL 207

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
                 +G   N++ Y+ LIDGY K  +M+ A  ++ E+      P +
Sbjct: 208 IEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTV 255


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L    KL   +  +G  P+ +TYNT+I G C   +LD+AV L E++   +  PN
Sbjct: 267 LCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPN 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+   K+ R  D   +   M E+G + N   YS LI G FK    + A  +++
Sbjct: 327 DVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWK 386

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E    PNI             G+P EA ++ + M+ +G +P+    S+L     ++ 
Sbjct: 387 KMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTG 446

Query: 170 GSQE 173
            S+E
Sbjct: 447 LSEE 450



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+       +L   + +RG   +   Y+ +I G     + +EA+ L++K+     +PN
Sbjct: 337 LVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPN 396

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ +ID  C+EG+ ++A  + + M+  G   NV TYS L+ G+FK+   + A  V+ 
Sbjct: 397 IVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWR 456

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E   S N              GR  EAM ++  ML  GI PD +  S++
Sbjct: 457 EMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSM 508



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++F  + ++   PD  TY T++ G C   R+DEAV L +++      P+
Sbjct: 197 LCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPS 256

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + +LID  CK+G +   T +   M  KG   N VTY+ LI G      +  A  + E
Sbjct: 257 PVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLE 316

Query: 122 EMCENNISPN 131
            M  +   PN
Sbjct: 317 RMVSSKCIPN 326



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 15/188 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   + A ++   +   G  P++ TY++++ G+      +EA+Q++ ++       N
Sbjct: 407 LCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRN 466

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +++LID  C  GR+ +A M++SKML  G K + V YS +I G     +M +A  +Y 
Sbjct: 467 EFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYH 526

Query: 122 EMC---ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           EM    E    P++                + A+ L + ML  G  PD +  +T  +   
Sbjct: 527 EMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLS 586

Query: 167 QSSGSQEH 174
           + S S E 
Sbjct: 587 EKSDSCEE 594



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P+ +++N +I   C L  +D A+++F  +   +  P+  T+  L+D  CKE R+D+A 
Sbjct: 183 ISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAV 242

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----------- 131
           ++  +M  +G   + V Y+ LIDG  K  ++     + + M      PN           
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGL 302

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + G+  +A+ L + M+ +  +P+ +   TL +
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLIN 335



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           + + PN ++F ++I A CK G +D A  +F  M EK    +  TY  L+DG  K + +  
Sbjct: 181 MNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDE 240

Query: 116 AFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           A  + +EM     SP+              G  +   +L D+M   G  P+ +  +TL
Sbjct: 241 AVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTL 298


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A  LF ++ + G  PD++T+N++I GY     LDE  QL E++     K +
Sbjct: 198 LCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKAD 257

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ FCK GRM+ A   F+ M  +G  ANVVT+S  +D + K   ++ A  ++ 
Sbjct: 258 VVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFA 317

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    ++ N             AGR  +A+ L D M+R G+  + +  + L D
Sbjct: 318 QMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVD 371



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KLF Q+  RG+  +  TY  +I G C   RLD+A+ L +++    +  N +
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T+L+D  CKE ++ +A  +   M + G +AN + Y+ LI G+F ++N + A  +  EM
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               +  +I+             +  EA  L   M  +G+ P+ ++ +T+ D   +S   
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKV 484

Query: 172 QE 173
            E
Sbjct: 485 PE 486



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A   F  +   G+  +++T++T +  +C    + EA++LF ++    +  N  T+T
Sbjct: 273 RMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYT 332

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK GR+DDA ++  +M+ +G   NVVTY+ L+DG  K + +  A DV   M + 
Sbjct: 333 CLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKA 392

Query: 127 NISPN 131
            +  N
Sbjct: 393 GVRAN 397



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 34/180 (18%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL L  ++ ++GLE DI  Y  +I G C++++LDEA  L  K+    L+PN I +T +
Sbjct: 415 EKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTM 474

Query: 69  IDAFCKEGR----------------------MDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           +DA  K G+                      +++A  +F++M+ KG   + V Y+ L+DG
Sbjct: 475 MDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDG 534

Query: 107 YFKSQNMKSAFDVYEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           Y K  N+  AF +  +M ++ +  +       I+G        EA +++  M+ +GI PD
Sbjct: 535 YLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 594



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 16/151 (10%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF QL      P++ T+N +I   C    L EA  LF ++  +   P+ +TF  LID +
Sbjct: 178 RLFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY 233

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G +D+   +  +M   G KA+VVTY+ LI+ + K   M++A+  +  M    +  N+
Sbjct: 234 GKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANV 293

Query: 133 A------------GRPTEAMQLYDSMLRNGI 151
                        G   EAM+L+  M   G+
Sbjct: 294 VTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 36/199 (18%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+ L  ++  +G+  +++TY  ++ G C   ++ EA  +   +    ++ N +
Sbjct: 340 KAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL 399

Query: 64  TFTILI-----------------------------------DAFCKEGRMDDATMMFSKM 88
            +T LI                                      C   ++D+A  + +KM
Sbjct: 400 LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKM 459

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLR 148
            E G + N + Y+ ++D  FKS  +  A  + +++ ++   PN  G   EA+QL++ M+ 
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN-NGCLNEAVQLFNEMVH 518

Query: 149 NGIMPDGLLLSTLADYNLQ 167
            G+  D ++ + L D  L+
Sbjct: 519 KGMSLDKVVYTALLDGYLK 537



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A++LF ++  +G+  D + Y  ++ GY     L +A  L  K+    L+ +   +T 
Sbjct: 506 LNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTC 565

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            I  FC    M +A  +FS+M+  G   +   Y+CLI
Sbjct: 566 FISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 602



 Score = 42.7 bits (99), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+ +L  A  L  ++ D GL+ D+  Y   I G+C+LN + EA ++F ++    + P+ 
Sbjct: 536 LKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDR 595

Query: 63  ITFTILI 69
             +  LI
Sbjct: 596 AVYNCLI 602


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE  L  A +L  ++  RG+ PD +TY ++I G+C  N+LD+A  + + +      PN
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILI+ +CK   +DD   +F KM  +G  A+ VTY+ LI G+ +   ++ A ++++
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSM 146
           EM    + P+I             G P +A+++++ +
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A  LF ++  +G + DII Y T+I G+C   R D+  +L   +   ++ P+
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ LID F KEG++ +A  +  +M+++G   + VTY+ LIDG+ K   +  A  + +
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      PNI            A    + ++L+  M   G++ D +  +TL
Sbjct: 377 LMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 94/179 (52%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A  +   +  +G  P+I T+N +I GYC  N +D+ ++LF K++   +  +++
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC+ G+++ A  +F +M+ +  + ++V+Y  L+DG   +   + A +++E++
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            ++ +  +I            A +  +A  L+ S+   G+ PD      +  YN+   G
Sbjct: 484 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD------VKTYNIMIGG 536



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL+L  ++ + G +P +IT N ++ G C   ++ +AV L +++     +PN +T
Sbjct: 155 EGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVT 214

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  ++   CK G+   A  +  KM E+  K + V YS +IDG  K  ++ +AF+++ EM 
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 274

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 +I            AGR  +  +L   M++  I PD +  S L D
Sbjct: 275 IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALID 325



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 67/121 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L  ++ +R ++ D + Y+ II G C    LD A  LF ++     K + I +T LI 
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC  GR DD   +   M+++    +VV +S LID + K   ++ A ++++EM +  ISP
Sbjct: 291 GFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISP 350

Query: 131 N 131
           +
Sbjct: 351 D 351



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 91/179 (50%), Gaps = 16/179 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A +LF ++  R + PDI++Y  ++ G C     ++A+++FEK+   +++ +   + 
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYN 496

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I   C   ++DDA  +F  +  KG K +V TY+ +I G  K  ++  A  ++ +M E+
Sbjct: 497 IIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDG----LLLSTLADYNLQSS 169
             SPN              G  T++ +L + + R G   D     +++  L+D  L+ S
Sbjct: 557 GHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLKKS 615



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L L  Q+  +G+  ++ T + +I   C   +L  A     K+  +  +P+++TF+ L
Sbjct: 89  DLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTL 148

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C EGR+ +A  +  +M+E G K  ++T + L++G   +  +  A  + + M E   
Sbjct: 149 INGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGF 208

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN             +G+   AM+L   M    I  D +  S + D
Sbjct: 209 QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIID 255



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 52/113 (46%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  LF  L  +G++PD+ TYN +I G C    L EA  LF K+      PN  T+ 
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYN 566

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           ILI A   EG    +  +  ++   G   +  T   ++D     +  KS  D+
Sbjct: 567 ILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLKKSFLDM 619



 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF ++T     P +I ++ +        + D  + L +++    +  N  T +I+
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C+  ++  A     K+++ G + + VT+S LI+G      +  A ++ + M E   
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            P +             G+ ++A+ L D M+  G  P+
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 78/128 (60%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A  +  Q+ D G+EPDI+ YN ++ GY   +++ +A  L +++     +PN+ 
Sbjct: 247 KEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNAT 306

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++T+LI + CK  R+++AT +F +M   G +A++VTYS LI G+ K   +K  +++ +EM
Sbjct: 307 SYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEM 366

Query: 124 CENNISPN 131
            +    PN
Sbjct: 367 IQQGHFPN 374



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++  ++ + G EPD   +  ++        + EA  LFE+L   + KP+   FT L+ 
Sbjct: 185 AVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELR-YRWKPSVKHFTSLLY 243

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CKEG++ +A  +  +M + G + ++V Y+ L+ GY ++  M  A+D+ +EM      P
Sbjct: 244 GWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEP 303

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N               R  EA +++  M RNG   D +  STL
Sbjct: 304 NATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTL 346



 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 15/147 (10%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PD+  YNT+I   C L  + E V+L+ ++    L P+  TF I+I+ F ++G + +A
Sbjct: 405 GCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEA 464

Query: 82  TMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVY-----EEMCENNISPNI-- 132
              F +M+ +G  A     T   L++   +++ ++ A D +      + C+ N+S     
Sbjct: 465 CEYFKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVSAWTIW 524

Query: 133 ------AGRPTEAMQLYDSMLRNGIMP 153
                  G   EA     +M+   +MP
Sbjct: 525 IHALFSKGHVKEACSFCIAMMDKDLMP 551



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 68/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A ++F ++   G + D++TY+T+I G+C   ++    +L +++      PN
Sbjct: 315 LCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPN 374

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  ++ A  K+  +++   + ++M + G   ++  Y+ +I    K   +K    ++ 
Sbjct: 375 QVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWN 434

Query: 122 EMCENNISPNI 132
           EM  + +SP+I
Sbjct: 435 EMESSGLSPSI 445


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P++ TYN  I G C    +DEA+++ + +    L P+  T+T+L+D FCK+ R  +A +
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F  M   G   N  TY+ LIDG+ K  N++ A  + +EM    +  N+           
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            AG   +AM L++ ML  G+ PD    + L D  L+S    + C
Sbjct: 393 KAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKAC 436



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A +L+ ++   G+ P+I+ YNT+I G C L  + +A +LF+++    L P+ +
Sbjct: 673 KEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVV 732

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ +ID +CK G + +A  +F +M+ KG   +   Y  LIDG  K  N++ A  ++ E 
Sbjct: 733 TYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEA 792

Query: 124 CENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + ++    A           G+  EA +L+D M+   + P+ +  + L D
Sbjct: 793 QQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILID 843



 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  F  + ++GL PDI  Y+ II       +  EA+ +F K     + P+   +  LI 
Sbjct: 610 ALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLIS 669

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCKEG ++ A+ ++ +ML  G   N+V Y+ LI+G  K   +  A ++++E+ E ++ P
Sbjct: 670 GFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVP 729

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++            +G  TEA +L+D M+  GI PDG +   L D
Sbjct: 730 DVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILID 774



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A+ +F +    G+ PD+  YN++I G+C    +++A QL++++    + PN
Sbjct: 636 LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN 695

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LI+  CK G +  A  +F ++ EK    +VVTYS +IDGY KS N+  AF +++
Sbjct: 696 IVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFD 755

Query: 122 EMCENNISPN 131
           EM    ISP+
Sbjct: 756 EMISKGISPD 765



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 47/209 (22%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++   + ++GL PD  TY  ++ G+C   R  EA  +FE +    L PN  T+T 
Sbjct: 292 VDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTA 351

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC------------------------- 102
           LID F KEG +++A  +  +M+ +G K NVVTY+                          
Sbjct: 352 LIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 103 ----------LIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG-----RPTEAM 140
                     LIDGY KS +M  A ++  EM    ++P+       I+G        +A 
Sbjct: 412 LEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471

Query: 141 QLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           ++ D M+RNG+ P+  +  TL    +Q S
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQES 500



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE +++ AL++  ++  RGL+ +++TYN +I G      + +A+ LF ++    L+P+
Sbjct: 356 FIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPD 415

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ +LID + K   M  A  + ++M  +    +  TYS LI G   S +++ A +V +
Sbjct: 416 TWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLD 475

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +M  N + PN+              R   A++L   M+ NG++PD
Sbjct: 476 QMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 46/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A +LF ++ ++ L PD++TY+TII GYC    L EA +LF+++    + P+
Sbjct: 706 LCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPD 765

Query: 62  SITFTI----------------------------------LIDAFCKEGRMDDATMMFSK 87
              + I                                  LID+FCK G++ +A  +F  
Sbjct: 766 GYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDD 825

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M++K    N+VTY+ LID Y K++ M+ A  ++ +M   NI PN              G 
Sbjct: 826 MVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGN 885

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             + + L+  M   GI  D +    +A
Sbjct: 886 RFKMISLFKDMEARGIACDAIAYGVMA 912



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E   + A++L   +   G+ PD+  YN +I G C   +++EA  L   +    +KPN+
Sbjct: 497 VQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+   I+ + K G +  A   F  ML  G   N V Y+ LI G+    N   A   ++ 
Sbjct: 557 HTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKC 616

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M E  + P+I             G+  EAM ++   L+ G++PD  L ++L
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSL 667



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A + F  +   G+ P+ + Y  +I G+C +    EA+  F+ +    L P+  
Sbjct: 568 KSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIR 627

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ +I +  K G+  +A  +F K L+ G   +V  Y+ LI G+ K  +++ A  +Y+EM
Sbjct: 628 AYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM 687

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N I+PNI             G  T+A +L+D +    ++PD +  ST+ D
Sbjct: 688 LHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIID 739



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K   +  A+ LF ++   GLEPD  TYN +I GY   + + +A +L  ++   +L P+
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPS 450

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+++LI   C    +  A  +  +M+  G K NV  Y  LI  Y +    + A ++ +
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDG 155
            M  N + P++            A +  EA  L   M   GI P+ 
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A ++  Q+   G++P++  Y T+I  Y   +R + A++L + +    + P+ 
Sbjct: 462 CHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDL 521

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  LI   C+  ++++A M+   M EKG K N  TY   I+ Y KS  ++ A   +++
Sbjct: 522 FCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKD 581

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           M  + I PN              G   EA+  +  ML  G++PD
Sbjct: 582 MLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 13/160 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +L+ AL LF +   + +   +  +N++I  +C   ++ EA +LF+ +   +L PN +
Sbjct: 778 KEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIV 836

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILIDA+ K   M++A  +F  M  +    N +TY+ L+  Y +  N      ++++M
Sbjct: 837 TYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDM 896

Query: 124 CENNISPN-IA-----------GRPTEAMQLYDSMLRNGI 151
               I+ + IA           G+  EA++L +  L  GI
Sbjct: 897 EARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGI 936



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 47/196 (23%)

Query: 11   ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT---- 66
            A +LF  + D+ L P+I+TY  +I  Y     ++EA QLF  +    + PN++T+T    
Sbjct: 819  ARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLL 878

Query: 67   -------------------------------ILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                                           ++  A+CKEG+  +A  + +K L +G K 
Sbjct: 879  SYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKL 938

Query: 96   NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
                +  LI    K + + +  ++  EM +  +S +             +G   EA ++ 
Sbjct: 939  EDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVL 998

Query: 144  DSMLRNGIMPDGLLLS 159
              M R G +P  L L+
Sbjct: 999  GVMQRLGWVPTSLSLT 1014



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  +F      G  P +I  N ++      N +    +++  +   ++ P+  T+T 
Sbjct: 188 LNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTN 247

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I A CK G +    M+ S+M EK  K N+ TY+  I G  ++  +  A +V + M E  
Sbjct: 248 VIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKG 306

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           + P+       + G     R  EA  +++SM  +G+ P+    + L D  ++    +E
Sbjct: 307 LGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEE 364


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E  +      F ++ + G  P +I+ N ++ G   LNR+D+  Q+++++  V + PNS
Sbjct: 190 VREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNS 249

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            TF IL   FC++G +D       +M E+G + ++VTY+ LI  Y +   +  AF +Y  
Sbjct: 250 YTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRI 309

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M   N+ P++             G+  EA QL+  M+  G+ PD +  +TL
Sbjct: 310 MYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTL 360



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 73/124 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D       ++ + G EPDI+TYNT+I  YC   RLD+A  L+  +    + P+ +++T 
Sbjct: 265 VDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTA 324

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CKEG++ +A  +F +M+ +G   ++V+++ LI GY K   M+ +  +  EM  + 
Sbjct: 325 LMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSG 384

Query: 128 ISPN 131
           I P+
Sbjct: 385 ICPD 388



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A +LF ++  RGL PDI+++NT+ICGYC   ++ E+  L  ++    + P+
Sbjct: 329 LCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPD 388

Query: 62  SITFTILIDAF-----------------------------------CKEGRMDDATMMFS 86
            +T  +LI+ +                                   C+EGR   A  +  
Sbjct: 389 KVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQ 448

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
           ++ ++G    V  Y+ LI+   KS ++  A  V  EM   NI P+               
Sbjct: 449 RISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTS 508

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  EA  L + ML++G++PD
Sbjct: 509 RSMEAESLMEEMLQSGMLPD 528



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D   +++ ++   G+ P+  T+N +   +C    +D+     E++     +P+
Sbjct: 224 LLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPD 283

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  +C++GR+DDA  ++  M  +    ++V+Y+ L++G  K   ++ A  ++ 
Sbjct: 284 IVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFH 343

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    ++P+I             G+  E+  L   M+ +GI PD +    L +
Sbjct: 344 RMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIE 397



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  LD A  L+  +  R + PD+++Y  ++ G C   ++ EA QLF ++    L P+ +
Sbjct: 296 RKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIV 355

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +F  LI  +CKEG+M ++  +  +M+  G   + VT   LI+GY K   + SA ++  E+
Sbjct: 356 SFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVEL 415

Query: 124 CENN--ISPNI----------AGRPTEAMQLYDSMLRNGIMP 153
                 IS +I           GRP  A  L   + + G +P
Sbjct: 416 ERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVP 457



 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 20/142 (14%)

Query: 10  AALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-------------- 54
           +AL  F  +  D GL+P I  Y  ++          EA++   +L               
Sbjct: 107 SALTFFSWVKNDLGLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLVKDCSFNEDVFQ 166

Query: 55  -----CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
                C     + + F +L+ A+ +EG + +    F K++E G   +V++ +CL++G  K
Sbjct: 167 TLLFCCQDCNWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLK 226

Query: 110 SQNMKSAFDVYEEMCENNISPN 131
              +   + VY+EM    I PN
Sbjct: 227 LNRIDQCWQVYKEMARVGIHPN 248



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA  L  +++ RG  P +  YN +I   C  + + +A+ +  ++    +KP++IT+  LI
Sbjct: 442 AAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALI 501

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----------FDV 119
              C+  R  +A  +  +ML+ G   +      L+  Y K +++  A          F +
Sbjct: 502 CCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQI 561

Query: 120 YEEMCENNISPNIA--GRPTEAMQLYDSMLRNGIMPD 154
           ++    N +          T  M+L D ML+ G  P+
Sbjct: 562 FDSESYNTLVKTYCEDADATRLMELQDRMLKVGFAPN 598



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 3/148 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +  ++  R ++P  ITY  +IC  C  +R  EA  L E++    + P+      L+ 
Sbjct: 478 ALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMH 537

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CKE  +  A  +     ++    +  +Y+ L+  Y +  +     ++ + M +   +P
Sbjct: 538 VYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGFAP 597

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           NI         L+ +M    +  D LLL
Sbjct: 598 NIQTFRQMIHGLWKAM---AVEKDKLLL 622


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+++ Y T++ GYC + R+DE + LF ++    +KP++I + I
Sbjct: 554 MEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 613

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID     GR   A + F +M E G   N  TY+ ++ G+FK++    A  +++E+   N
Sbjct: 614 IIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMN 673

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           +  +       IAG     R  EA  L+ S+ R+G++P
Sbjct: 674 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 47/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ +F ++ D G++PD++TY T+I   C + ++D+A++ F ++    + P+   +  
Sbjct: 414 LDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 68  LIDAFC-----------------------------------KEGRMDDATMMFSKMLEKG 92
           LI  FC                                   K GR+ DA  +F   +  G
Sbjct: 474 LIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVG 533

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              + V YS L+DGY     M+ A  V++ M    I PN+             GR  E +
Sbjct: 534 QHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGL 593

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
            L+  ML+ GI P  +L + + D
Sbjct: 594 SLFREMLQKGIKPSTILYNIIID 616



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 72/121 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + G  PD + Y+ ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 522 AQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVN 581

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML+KG K + + Y+ +IDG F +     A   + EM E+ I+ 
Sbjct: 582 GYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAI 641

Query: 131 N 131
           N
Sbjct: 642 N 642



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C +D    LF  +   G+ PDI T++ +I  Y +   LD+A+ +F ++    +KP+ +
Sbjct: 376 KGCLVDMT-DLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 434

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +I A C+ G+MDDA   F++M+++G   +   Y CLI G+    ++  A ++  E+
Sbjct: 435 TYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEI 494

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N +  +I             GR  +A  ++D  +  G  PD ++ S L D
Sbjct: 495 MNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMD 546



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 22/184 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFT 66
           AL  FGQL   GL  DII  N ++ G+C   R DEA+ +      +L CV   P+  +++
Sbjct: 134 ALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCV---PDVFSYS 190

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           IL+ + C +G+   A  +   M E G     +VV Y+ +ID +FK  ++  A D+++EM 
Sbjct: 191 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMV 250

Query: 125 ENNISPNIAGRPT--------EAMQLYDSMLR----NGIMPDGLLLSTLADYNLQSSGSQ 172
           +  I P++    +         AM   ++ LR     G++PD    + L  Y   S+G  
Sbjct: 251 QRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLI-YGYSSTGQW 309

Query: 173 EHCI 176
           +  +
Sbjct: 310 KEAV 313



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A     Q+ ++G+ PD  TYN +I GY S  +  EAV++F+++    + P+
Sbjct: 268 LCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 327

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T  +L+ + CK G++ +A  +F  M  KG   +V +Y  +++GY     +    D+++
Sbjct: 328 VVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFD 387

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  + I+P+I             G   +AM +++ M  +G+ PD +  +T+
Sbjct: 388 LMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTV 439



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G+  DI+ +++II   C L R+ +A  +F+    V   P+++ +++L+D
Sbjct: 487 AKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMD 546

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+M+ A  +F  M+  G + NVV Y  L++GY K   +     ++ EM +  I P
Sbjct: 547 GYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 606

Query: 131 N------------IAGRPTEAMQLYDSMLRNGI 151
           +            +AGR   A   +  M  +GI
Sbjct: 607 STILYNIIIDGLFVAGRTVPAKVKFHEMTESGI 639



 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++    + PD++T N ++   C   ++ EA  +F+ +      P+  ++ I+++
Sbjct: 312 AVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLN 371

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +  +G + D T +F  ML  G   ++ T+S LI  Y     +  A  ++ EM ++ + P
Sbjct: 372 GYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKP 431

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           ++             G+  +AM+ ++ M+  G+ PD
Sbjct: 432 DVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 467



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 12/143 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            PD++ Y T+I  +     +++A  LF+++    + P+ +T++ ++ A CK   M  A  
Sbjct: 220 SPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEA 279

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
              +M+ KG   +  TY+ LI GY  +   K A  V++EM  ++I P++           
Sbjct: 280 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLC 339

Query: 134 --GRPTEAMQLYDSMLRNGIMPD 154
             G+  EA  ++D+M   G  PD
Sbjct: 340 KYGKIKEARDVFDTMAMKGQNPD 362



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +F  +  +G  PD+ +Y  ++ GY +   L +   LF+ +    + P+
Sbjct: 338 LCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 397

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF++LI A+   G +D A ++F++M + G K +VVTY+ +I    +   M  A + + 
Sbjct: 398 IYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFN 457

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +  ++P+              G   +A +L   ++ NG+  D +  S++
Sbjct: 458 QMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSI 509



 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  +  TYN ++ G+      DEA+ LF++L  + +K + IT   +I    +
Sbjct: 631 FHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 690

Query: 75  EGRMDDATMMFSKMLEKGPKANVVT 99
             R+++A  +F+ +   G    VVT
Sbjct: 691 TRRVEEAKDLFASISRSGLVPCVVT 715



 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
            D A+ LF +L    ++ DIIT NT+I G     R++EA  LF  ++   L P  +T
Sbjct: 659 FDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +   AL L+ ++   G+ PD++ Y  +I   C  +R+ EA  LF+K+T   + P+ I
Sbjct: 582 KQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKI 641

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++T +I  FC+ G M  A  +F++ML++G    VVTY+ L+DGY K   +  A  + +EM
Sbjct: 642 SYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEM 701

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
               I+P++             G   +A+++ + M  NG++PD +
Sbjct: 702 KRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHM 746



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+ F  + + G+ P I T N II  +C   R++EA+ L  ++    + PN  T+  +I+
Sbjct: 484 ALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVIN 543

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKE + + A  +F  ML++    +VV YS LIDG+ K  N + A  +Y  M +  ++P
Sbjct: 544 RLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTP 603

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGL 156
           ++              R  EA  L+  M  NG+ PD +
Sbjct: 604 DMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKI 641



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   + AL+LF  +  R + P ++ Y+T+I G+   +   +A+ L+ ++  + + P+
Sbjct: 545 LCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPD 604

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +TILI+  C   RM +A  +F KM E G   + ++Y+ +I G+ +  +M+ A+ ++ 
Sbjct: 605 MVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFN 664

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +    P +              R   A  L D M R GI PD +  + L
Sbjct: 665 EMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVL 716



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ AL L  ++  +G+ P++ TYN +I   C   + + A++LF  +    + P+ +
Sbjct: 512 REGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVV 571

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K+     A M++++ML+ G   ++V Y+ LI+       M  A++++++M
Sbjct: 572 VYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKM 631

Query: 124 CENNISPN-------IA-----GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EN ++P+       IA     G   +A  L++ ML+ G +P  +  ++L D
Sbjct: 632 TENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVD 683



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD ALK+  ++   G+ PD+ TY+ +I G+C    +++ + L E++    ++P+
Sbjct: 335 LCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPS 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++++ L    CK+   D +  +F  +   G K +   YS LI G+    ++ SA  + E
Sbjct: 395 LVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLME 454

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
           EM  NN++P+ +            G    A++ ++ ML  GI+P
Sbjct: 455 EMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILP 498



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D +L +F  L   G + D   Y+ +I G+C    LD A +L E++    L P+   F  L
Sbjct: 412 DISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESL 471

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +  FCK G   +A   F+ MLE G   ++ T + +ID + +   ++ A ++  EM    I
Sbjct: 472 VHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGI 531

Query: 129 SPNI-----------AGRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN+             R +E A++L+  ML+  ++P  ++ STL D   + S SQ+
Sbjct: 532 FPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQK 588



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 87/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A KL  ++    L PD   + +++ G+C +     A++ F  +    + P+  T  +
Sbjct: 446 LDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNV 505

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +IDA C+EGR+++A  + ++M  +G   N+ TY+ +I+   K +  + A +++  M + N
Sbjct: 506 IIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRN 565

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++    T            +A+ LY  ML+ G+ PD +  + L +
Sbjct: 566 VLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILIN 613



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A  LF ++  RG  P ++TY +++ GYC +NR+D A  L +++    + P+ +T+ +
Sbjct: 656 MRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNV 715

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           LI A  + G +D A  M ++M E G   + +TY  +++   K++ +K+
Sbjct: 716 LIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY-MMLEWLLKAKKLKT 762



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++  ++   G  P ++TY+T I G C +  ++ A+     L       N   +  +I 
Sbjct: 274 ATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIH 333

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+G +D+A  +  +M   G   +V TYS LI G+ K  +++    + EEM  +N+ P
Sbjct: 334 GLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEP 393

Query: 131 NIAG 134
           ++  
Sbjct: 394 SLVS 397



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ +F Q    GLE    + N ++      NR +    LFE++      PN  T+TI
Sbjct: 195 LENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTI 254

Query: 68  LIDAFCK----EGRMD--DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +++ +CK    E  +D   AT +  +M   G    VVTYS  I G  +   ++SA D   
Sbjct: 255 MMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVR 314

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +   N   N+             G   EA+++ + M   GI PD    S L
Sbjct: 315 SLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSIL 366



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLF--EKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           +I ++ +I  + + + L+ AV +F   K T ++L   S  F  L+    +  R +    +
Sbjct: 179 VIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNF--LLKCLAEANRREFLRSL 236

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQ------NMKSAFDVYEEMCENNISPNIAGRPT 137
           F +M   GP  NV TY+ +++ Y K        + + A ++ EEM  N  SP +    T
Sbjct: 237 FEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYST 295


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 14/182 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKP 60
           L K+  +D A  L  ++ + G+E D+ +YN++I G+CS+ R   AV+L +++    ++ P
Sbjct: 220 LCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYP 279

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  TF ILID  CK GR+ +A  + + M+++G K ++V+Y+ L++GY  S ++  A  V+
Sbjct: 280 DVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVF 339

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           ++M E    PN+    T            EAM L   M    ++PD +  + L D  L  
Sbjct: 340 DKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLD-GLSK 398

Query: 169 SG 170
           SG
Sbjct: 399 SG 400



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 13/157 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  +  DRG   D + Y TII G C + +  +A+Q+F K+  +++ PN I +  +ID
Sbjct: 159 AVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVID 218

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CENNIS 129
             CK+G +D+A  + ++M+E G + +V +Y+ +I G+      ++A  + +EM     + 
Sbjct: 219 GLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVY 278

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           P++             GR +EA  +   M++ G  PD
Sbjct: 279 PDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPD 315



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F ++ +R   P++I+Y T+I GYC +  +DEA+ L  ++    L P+++T+  L+D
Sbjct: 335 AKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLD 394

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K GR      +   M   G  A+++TY+ L+D YFK +    A  +++ + E  ISP
Sbjct: 395 GLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISP 454

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           NI            +GR   A +++  +   G  P+      +  YN+   G
Sbjct: 455 NIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPN------IRTYNIMIHG 500



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
              AA+KL  ++  RG + PD+ T+N +I G C L R+ EA  +   +     KP+ +++
Sbjct: 260 RFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSY 319

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             L++ +C  G + +A  +F KM+E+    NV++Y  LI+GY K + +  A  +  EM  
Sbjct: 320 NALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHN 379

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            N+ P+             +GR      L ++M  +G   D +  + L D
Sbjct: 380 KNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLD 429



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G   D+ITYN ++  Y    + D+A+ LF+ +  + + PN  T+ IL+D  CK GR+  A
Sbjct: 416 GQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYA 475

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             +F  +  KG + N+ TY+ +I G  K   +  A  +  +M  NN  PN
Sbjct: 476 KEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPN 525



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D AL LF  + + G+ P+I TYN ++ G C   RL  A ++F+ L+    +PN  
Sbjct: 433 KHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIR 492

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           T+ I+I   CKEG +D+A  +  KM+      N +T+  ++
Sbjct: 493 TYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIV 533



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  ++ ++ L PD +TYN ++ G     R      L E +       + IT+ +
Sbjct: 367 VDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNV 426

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D + K  + D A  +F  ++E G   N+ TY+ L+DG  KS  +K A ++++ +    
Sbjct: 427 LLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKG 486

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             PNI             G   EA  L   M+ N  +P+ +   T+ 
Sbjct: 487 CQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIV 533



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L G +   G + D+    T++ G C   R+ EAV L  +      + + + +  +I+
Sbjct: 124 AFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIIN 183

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+  DA  MF KM +     N++ Y+ +IDG  K   +  A  +  EM EN I  
Sbjct: 184 GLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIEL 243

Query: 131 NI------------AGRPTEAMQLYDSM-LRNGIMPDGLLLSTLAD 163
           ++             GR   A++L D M +R  + PD    + L D
Sbjct: 244 DVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILID 289



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F  L+ +G +P+I TYN +I G C    LDEA  L  K+      PN
Sbjct: 466 LCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPN 525

Query: 62  SITFTILIDA 71
            ITF  ++ A
Sbjct: 526 YITFDTIVRA 535


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSIT 64
            + AAL +  ++ +RG + P+  TY T+I G+C + R+DEAV++F E LT  ++KP ++ 
Sbjct: 529 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 588

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI  +C +G++D A +   +M+E+G    V TY+ L+   F       A+++ EEM 
Sbjct: 589 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 648

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
              ++P++             G   +A++++++M R G+
Sbjct: 649 GKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 687



 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 91/163 (55%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++  +GL PD+ TYN +I G+C    + +A+++FE ++   ++   +T+T LI 
Sbjct: 640 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 699

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K+G++ +   +F + + +G + ++V Y+ LI+ +  S N+  AF++  EM +  I+P
Sbjct: 700 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 759

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +            + GR  EA +L D M   GI PD +  +TL
Sbjct: 760 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 802



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +    KLF +   RG+ PD++ YN +I  + +   +D A ++  ++   ++ P+
Sbjct: 701 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 760

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+   C  GR+D+A  +  +M E+G + ++VTY+ LI GY    ++K A  +  
Sbjct: 761 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 820

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM     +P +             G+  +A  +   M+ NGI PD
Sbjct: 821 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 865



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 18/158 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPNSITFTILI 69
           AL+L  Q+      P+ +TYNT+I G+CS  R+  A+ +  ++     + PN  T+  +I
Sbjct: 502 ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 557

Query: 70  DAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             +CK GR+D+A  +F +ML KG  K   V Y+ LI GY     + +A    + M E  +
Sbjct: 558 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 617

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +  +A            GR TEA +L + M   G+ PD
Sbjct: 618 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 655



 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K   +D A+K+F ++  +G ++P+ + YN +I GYC   +LD A+   +++    +    
Sbjct: 562 KVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTV 621

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ +L+ A   +GR  +A  +  +M  KG   +V TY+ LI+G+ K  N+K A +++E 
Sbjct: 622 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFEN 681

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M    +   +             G+  E  +L+D  +R GI PD +L + L
Sbjct: 682 MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 732



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A KL  ++T+RG++PD++TYNT+I GY     + +A+++  ++      P  +T+ 
Sbjct: 776 RVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 835

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            LI   CK G+ DDA  M  +M+E G   +  TY  LI+G
Sbjct: 836 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 875



 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++ ++G  P ++TYN +I G C   + D+A  + +++    + P+  T+  LI+
Sbjct: 815 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 874

Query: 71  AFCKE 75
               E
Sbjct: 875 GLTTE 879


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 92/173 (53%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
             +K+  +D   K   ++ + G  PDI+TYNT+I  +C + ++DEA +L +++    LK 
Sbjct: 381 WFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKM 440

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T   ++ A C+E ++D+A  +      +G   + V+Y  LI GYFK +    A  ++
Sbjct: 441 DDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLW 500

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM E  I P+I             G+  +A+   D +L +G++PD +  +T+
Sbjct: 501 DEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTI 553



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 6/143 (4%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A+    +L + GL PD ITYNTII GYC   ++++A Q   K+     KP+ +T   L
Sbjct: 529 NQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTL 588

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   CKEG ++ A  +F+  + KG   + V+Y+ +I    K +    AFD+ EEM E  +
Sbjct: 589 LCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKL 648

Query: 129 SPN------IAGRPTEAMQLYDS 145
            P+      I G  T+A ++ D+
Sbjct: 649 GPDCYTYNAILGGLTDAGRMKDA 671



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  L   + ++GL P+  T+N ++ G C L  L EA  + E ++   + P+
Sbjct: 242 LCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPD 301

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ ++I  FCK+GR+ +A  +  +M       +VVTY+ LI+G F+  + +  F + E
Sbjct: 302 AWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIE 361

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM    + PN              G+  E  +    M  +G +PD +  +TL  ++
Sbjct: 362 EMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWH 417



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 69/120 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A++L  ++ +  L PD++TYNT+I G       +E  +L E++    +KPNS+
Sbjct: 314 KQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSV 373

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +++  F K+G+MD+      KM E G   ++VTY+ LI  + K   M  AF + +EM
Sbjct: 374 TYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEM 433



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E     A+++ G++ D G  PD ITYNTI+ G C   RL+EA  L   +    L PN  T
Sbjct: 210 ENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTT 269

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F IL+   C+ G + +A  +   M +     +  TY+ +I G+ K   +  A  + EEM 
Sbjct: 270 FNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEME 329

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
              +SP++             G   E  +L + M   G+ P+ +  + +  +
Sbjct: 330 NLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKW 381



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F      G++ +  ++N +I G C  NR  EA+++  K+      P++IT+  ++D  C
Sbjct: 184 VFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLC 243

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K+GR+++A  +   M  KG   N  T++ L+ G  +   +K A +V E M +N++ P+  
Sbjct: 244 KKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAW 303

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                       GR  EAM+L + M    + PD +  +TL +   +   S+E
Sbjct: 304 TYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEE 355



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  LD A  L      RG   D ++Y T+I GY    +  +A++L++++   ++ P+
Sbjct: 452 LCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPS 511

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  +I   C+ G+ + A     ++LE G   + +TY+ +I GY +   ++ AF  + 
Sbjct: 512 IITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHN 571

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E N  P++             G   +A++L+++ +  G   D +  +T+
Sbjct: 572 KMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTI 623



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 49/95 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ ALKLF     +G + D ++YNTII   C   R  EA  L E++   +L P+
Sbjct: 592 LCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPD 651

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
             T+  ++      GRM DA    SK+ EKG   N
Sbjct: 652 CYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSEN 686



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 67/128 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A +   ++ ++  +PD++T NT++CG C    L++A++LF          +++
Sbjct: 559 QEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAV 618

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  +I + CKE R  +A  +  +M EK    +  TY+ ++ G   +  MK A +   ++
Sbjct: 619 SYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKI 678

Query: 124 CENNISPN 131
            E   S N
Sbjct: 679 AEKGKSEN 686



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 25/177 (14%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLN-----RLDEAVQLFEKLTCVQLKPNSITF 65
           A ++F ++   G++P ++T NT++            RL +AV  F     + +K N+ +F
Sbjct: 143 AAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAV--FTDFIKIGVKINTNSF 200

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            ILI   C E R  +A  +  KM + G   + +TY+ ++DG  K   +  A D+  +M  
Sbjct: 201 NILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKN 260

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             + PN              G   EA  + + M +N ++PD         YN+  SG
Sbjct: 261 KGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAW------TYNVMISG 311


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A  +F Q+ D G +P+  TYN +I GY S+ +  E VQ+ E+++   LKP+  T+  
Sbjct: 250 FDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGS 309

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CK GR  +A   F  M+ KG K  V TY  LI GY     +       + M EN 
Sbjct: 310 LLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENG 369

Query: 128 ISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +SP     NI        G   +AM +++ M ++G+ P+ +    L D
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALID 417



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 13/177 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F  +   GL P  +TYNT++ GYCS +R+D+A  LF ++    + P  +T+  +
Sbjct: 531 DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTI 590

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +    +  R  +A  ++  M+  G K ++ TY+ +++G  KS  +  AF +++ +C   +
Sbjct: 591 LHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGL 650

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             NI             GR  +AM L+ ++  NG++P+ +    +A+ NL   GS E
Sbjct: 651 QLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAE-NLIEEGSLE 706



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 2   LIKECHLDAALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           L  E   + AL+L   + D   R   P++++Y+ +I G+ +  ++D+   LF ++    +
Sbjct: 171 LCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGI 230

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            P+ +T+T +ID  CK    D A  +F +M++ G K N  TY+CLI GY      K    
Sbjct: 231 PPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQ 290

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           + EEM    + P+              GR  EA   +DSM+R GI P
Sbjct: 291 MLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKP 337



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++ D+G+ P+ + +NT+IC  C++ R+ E  +L + +  V ++P++ ++T L
Sbjct: 461 ERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPL 520

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +C  GR D+A  +F  M+  G     VTY+ L+ GY  +  +  A+ ++ EM    +
Sbjct: 521 ISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGV 580

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +P +              R +EA +LY +M+ +G   D
Sbjct: 581 TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCD 618



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + + GL PD   +N     Y     +D+A+ +F K+    L PN + +  LIDA CK GR
Sbjct: 365 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 424

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           +DDA + F++M+ +G   N+V ++ L+ G       + A ++  EM +  I PN      
Sbjct: 425 VDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNT 484

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   GR  E  +L D M   G+ PD    + L
Sbjct: 485 LICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPL 520



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 87/166 (52%), Gaps = 15/166 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT---CVQLKPNSITFTILID 70
           L  ++ + G  PD ++Y  ++ G C+  R +EA++L   +      +  PN ++++I+I+
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVIN 207

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F  EG++D    +F +M+++G   +VVTY+ +IDG  K+Q    A  V+++M +N   P
Sbjct: 208 GFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKP 267

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           N              G+  E +Q+ + M   G+ PD     +L +Y
Sbjct: 268 NNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNY 313



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  LF ++  +G+ P ++TYNTI+ G     R  EA +L+  +     K +  T+ I
Sbjct: 565 IDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNI 624

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  CK   +D+A  MF  +  KG + N++T++ +I    K    + A D++  +  N 
Sbjct: 625 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANG 684

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + PN+             G   E   L+ +M +NG  P+  +L+ L 
Sbjct: 685 LVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 731



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            F  +  +G++P + TY  +I GY +   L E     + +    L P+   F I   A+ 
Sbjct: 326 FFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYA 385

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D A  +F+KM + G   NVV Y  LID   K   +  A   + +M    ++PNI 
Sbjct: 386 KCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV 445

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        +   A +L   ML  GI P+ +  +TL
Sbjct: 446 VFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTL 485



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ +F ++   GL P+++ Y  +I   C L R+D+A   F ++    + PN + F  
Sbjct: 390 IDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNS 449

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C   + + A  +  +ML++G   N V ++ LI        +     + + M    
Sbjct: 450 LVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG 509

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+            + GR  EA +++D M+  G+ P  +  +TL
Sbjct: 510 VRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTL 555



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F  L  +GL+ +IIT+  +I       R ++A+ LF  +    L PN +T+ +
Sbjct: 635 VDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRL 694

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +   +EG +++   +FS M + G   N    + L+       ++  A     ++ E N
Sbjct: 695 VAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERN 754

Query: 128 IS 129
            S
Sbjct: 755 FS 756



 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGY----CSLNRLDEAVQLFEKLT--CV-QLKP 60
           LD ALKLF +L        +  +N ++       CS +  + AV  F ++   C  ++ P
Sbjct: 30  LDDALKLFDELLHHARPASVRAFNHLLTAVSRARCS-SASELAVSHFNRMVRECSDKVAP 88

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           N  T++ILI  FC+ G ++     F  +L+ G + + +  + L+ G    + +  A DV
Sbjct: 89  NLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDV 147



 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A+ LF  +   GL P+++TY  +         L+E   LF  +      PN
Sbjct: 664 LLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPN 723

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ---NMKSAFD 118
           S     L+      G +  A    SK+ E+       T S L+  +   +   + KS  +
Sbjct: 724 SQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLPE 783

Query: 119 VYEEMCENNISPNI 132
            Y  + E N S  I
Sbjct: 784 KYHFLNEANSSALI 797


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 78/130 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L  +++  G  P+++TYNT+I G C  ++ ++A +L E L      P+
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPD 184

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+TI++D  CKEGR+D A  M   ML++G   +V+TY+ L++G  ++  +  A  +++
Sbjct: 185 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 244

Query: 122 EMCENNISPN 131
           EM   + + +
Sbjct: 245 EMVSKDCTAD 254



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  L   + +R   P   TYNT+I G C    +D A  L ++       P+
Sbjct: 55  LCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPD 114

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++IL D  CK GR+D+A  +  +M   G   N+VTY+ LIDG  K+   + A+++ E
Sbjct: 115 VVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLE 174

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +   P++             GR  +A+++ + ML+ G  P  +  + L
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTAL 226



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A ++  ++ DRG+ PD +T+N+I+ G C   + + A  L   +     +P+
Sbjct: 20  LCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPS 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   CK+  +D A  +  + +  G   +VVTYS L DG  K   +  AF++ +
Sbjct: 80  CCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVK 139

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM  N  +PN+            A +  +A +L ++++ +G +PD +  + + D
Sbjct: 140 EMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVD 193



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I  YN ++ GYC   RLDE   +FE + C    PN  T+ I++D  CK G++D+A   
Sbjct: 285 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 344

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG---------- 134
              M   G   +VV+Y+ +IDG FK+   K A  V ++M +  I P+             
Sbjct: 345 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 404

Query: 135 --RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             R  +A+ +  +M++ G+ PD +  +TL
Sbjct: 405 EERFDDAVGILKNMIKAGVDPDNVTYNTL 433



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + +R + PD+ TYN +I G C  ++ D+A ++  ++    + P+++TF  ++D  CK G+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
            + A  + + M E+  + +  TY+ LI G  K QN+  A  + +E   +   P++     
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                   GR  EA +L   M  NG  P+ +  +TL D   ++S +++
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEK 168



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 21/185 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A +L   L   G  PD++TY  I+ G C   RLD+A+++ E +      P+
Sbjct: 160 LCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
            IT+T L++  C+ GR+D+A  +F +M+ K   A+ + Y  L++GY KS   K A     
Sbjct: 220 VITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD 279

Query: 117 -------FDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
                   DVY  + +        GR  E   +++ M   G +P+      +  YN+   
Sbjct: 280 GIRGTPYIDVYNALMDGYCKE---GRLDEIPNVFEDMACRGCVPN------IKTYNIVMD 330

Query: 170 GSQEH 174
           G  +H
Sbjct: 331 GLCKH 335



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A      +   G  PD+++YN II G    ++  EA Q+ +++    + P+
Sbjct: 332 LCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPD 391

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  L+  FCKE R DDA  +   M++ G   + VTY+ LI G  ++  +  A+++  
Sbjct: 392 AVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMH 451

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           EM  N     +    T    + D + + G +   LLL
Sbjct: 452 EMLRNGC---VVSACTTYNTIIDRLCKEGCLKQALLL 485



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD    +F  +  RG  P+I TYN ++ G C   ++DEA    E +      P+ +
Sbjct: 299 KEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVV 358

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ I+ID   K  +  +A  +  +M++ G   + VTY+ L+  + K +    A  + + M
Sbjct: 359 SYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM 418

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNG 150
            +  + P+       I+G     R  +A +L   MLRNG
Sbjct: 419 IKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 457



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 18/159 (11%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LK 59
           L KE  LD A  L  ++ T R    D ++Y T+I G C   +LD A +L  ++  V+ L 
Sbjct: 508 LCKEGRLDEASSLLSEMDTLR----DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLC 563

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
             S TF +LIDAF K  R+D+A  +   M+++G   +V+TY+ +I    K   +  A+++
Sbjct: 564 ITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWEL 623

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSM 146
           ++EM    I  +              GR  EA+Q+ + M
Sbjct: 624 FDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 662



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  AL L   +T  G+E + +TYN  I   C   RLDEA  L  ++  ++   +
Sbjct: 473 LCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---D 529

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLE-KGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +++T +I   CK  ++D A+ +  +M+  KG      T++ LID + K++ +  A  + 
Sbjct: 530 EVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLL 589

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           E M +   SP++              +  +A +L+D M   GI+   +  + L  Y L  
Sbjct: 590 ELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLI-YGLCG 648

Query: 169 SG 170
            G
Sbjct: 649 QG 650



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 52/199 (26%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL---TCV---- 56
           KE   D A+ +   +   G++PD +TYNT+I G    NRL +A +L  ++    CV    
Sbjct: 404 KEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSAC 463

Query: 57  -----------------------------QLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
                                         ++ N++T+ I ID  CKEGR+D+A+ + S+
Sbjct: 464 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 523

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM------CENNISPNI-------AG 134
           M       + V+Y+ +I G  K++ +  A  +  EM      C  + + N+         
Sbjct: 524 M---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTK 580

Query: 135 RPTEAMQLYDSMLRNGIMP 153
           R  EA+ L + M++ G  P
Sbjct: 581 RLDEALTLLELMVQRGCSP 599



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 2   LIKECHLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   LD A KL  ++   +GL     T+N +I  +    RLDEA+ L E +      P
Sbjct: 540 LCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSP 599

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + IT+ ++I   CK  ++D A  +F +M  +G  A+ V+Y+ LI G       K A  V 
Sbjct: 600 SVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVL 659

Query: 121 EEMCENN 127
           EEM  ++
Sbjct: 660 EEMASSD 666



 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +LF ++  RG+    ++Y  +I G C   R  EA+Q+ E++     + + +    
Sbjct: 617 VDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRK 676

Query: 68  LIDAFCKEGRMDDATMMFSKMLEK 91
           L  A   +GR ++A  +  +M  K
Sbjct: 677 LYLALRGQGRGEEAAELLRRMTTK 700


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL +F  +  + + P I TY ++I G C+ +R  EA  L  ++T + + PN
Sbjct: 125 LCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPN 184

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +L+D FCKEG++  A  +   M E G + +VVTY+ L+ GY     +  A  +++
Sbjct: 185 VVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFD 244

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P++            A R  EA QL++ M+  G  P+ +  +TL
Sbjct: 245 VMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTL 296



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 10/168 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +LF ++  +G  P+ ++YNT+I G C L RL EA  LF+ +      PN  
Sbjct: 267 KAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLY 326

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+D FCK+G +  A  +F  M     K N+V Y+ L++   KS N+K A +++ E+
Sbjct: 327 TYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSEL 386

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY-NLQSSG 170
               + PN+        Q+Y +++ NG+  +GLL   L  + N++  G
Sbjct: 387 FVIGLQPNV--------QIYTTII-NGLCKEGLLDEALEAFRNMEDDG 425



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  +  +G +PD+ +Y+ +I GYC   R+DEA QLF ++      PN++++  LI 
Sbjct: 239 ARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIH 298

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GR+ +A  +F  M   G   N+ TY+ L+DG+ K   +  AF ++  M    + P
Sbjct: 299 GLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKP 358

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+            +G   +A +L+  +   G+ P+  + +T+ +
Sbjct: 359 NLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIIN 403



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  + AA  +   +T+ G+EPD++TYN+++ GY     + EA +LF+ +     KP+  
Sbjct: 197 KEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVF 256

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++ILI+ +CK  R+D+A  +F++M+ +G   N V+Y+ LI G  +   ++ A D+++ M
Sbjct: 257 SYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNM 316

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N   PN+             G   +A +L+ +M    + P+ ++ + L +
Sbjct: 317 HTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVN 368



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D    +  +    GL+P I+T+ T+I G   + +  +AV+LF+ +     +P+  T+T
Sbjct: 25  RVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYT 84

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+  CK G    A  +F KM E G + NVVTYS LI    K + +  A D++  M   
Sbjct: 85  TIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAK 144

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +ISP I              R  EA  L + M    IMP+ +  + L D
Sbjct: 145 DISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVD 193



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++LF  +  RG +PD  TY TII G C +     A  LF+K+     + N +T++ LI 
Sbjct: 64  AVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIH 123

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK  R+++A  +FS M  K     + TY+ LI G       K A  +  EM   NI P
Sbjct: 124 SLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMP 183

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G+   A  +  +M   G+ PD +  ++L
Sbjct: 184 NVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSL 226



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 65/125 (52%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A  LF  +   G  P++ TY  ++ G+C    L +A +LF  +    LKPN + + 
Sbjct: 305 RLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYN 364

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL++A CK G + DA  +FS++   G + NV  Y+ +I+G  K   +  A + +  M ++
Sbjct: 365 ILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDD 424

Query: 127 NISPN 131
              P+
Sbjct: 425 GCPPD 429



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 65/120 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L  A +LF  +    L+P+++ YN ++   C    L +A +LF +L  + L+PN  
Sbjct: 337 KQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQ 396

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +I+  CKEG +D+A   F  M + G   +  +Y+ +I G+ + ++   A  +  EM
Sbjct: 397 IYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEM 456



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A +LF +L   GL+P++  Y TII G C    LDEA++ F  +      P+  
Sbjct: 372 KSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEF 431

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++ ++I  F +      A  +  +M ++G
Sbjct: 432 SYNVIIRGFLQHKDESRAVHLIGEMRDRG 460


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P++ITY  ++ G C  NR+ EA +L + +     +PN I +  +ID FCK G++ DA  +
Sbjct: 614 PNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEV 673

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
           F+KM E+G   N+ TYS  ID  FK   +     V  +M EN+ +PN+            
Sbjct: 674 FTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCK 733

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            G+  EA +L   M   G  P+ +  + + D     SG  E C+
Sbjct: 734 IGKTDEAYKLMLKMEEKGCNPNVVTYTAMID-GFGKSGKIEQCL 776



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A K+  ++  +G  PD  TY+ +I   C  +++++A  LFE++    + P+  T+TI
Sbjct: 441 FDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTI 500

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G +  A   F +ML KG   NVVTY+ LI  Y K++ M  A +++E M    
Sbjct: 501 LIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEG 560

Query: 128 ISPNI------------AGRPTEAMQLYDSM 146
             PN+            AG+  +A Q+Y  M
Sbjct: 561 CKPNVVTYTALIDGHCKAGQIEKACQIYARM 591



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 73/125 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++F ++++RG  P++ TY++ I      NRLD  +++  K+      PN + +T 
Sbjct: 667 LQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTE 726

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D  CK G+ D+A  +  KM EKG   NVVTY+ +IDG+ KS  ++   +++ +MC   
Sbjct: 727 MVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKG 786

Query: 128 ISPNI 132
            +PN 
Sbjct: 787 CAPNF 791



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 34/187 (18%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  LF ++   G+ P + TY  +I  +C    + +A + F+++      PN +T+T 
Sbjct: 476 VEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTA 535

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM---- 123
           LI A+ K  +M  A  +F  ML +G K NVVTY+ LIDG+ K+  ++ A  +Y  M    
Sbjct: 536 LIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDI 595

Query: 124 ---------------CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
                          CE    PN+            A R  EA +L D+ML +G  P+ +
Sbjct: 596 ESSDMDKYFKLDHNNCE---GPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQI 652

Query: 157 LLSTLAD 163
           +   + D
Sbjct: 653 VYDAVID 659



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 17/174 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE H     +L   +   G EP+ I Y+ +I G+C + +L +A ++F K++     PN 
Sbjct: 632 VKEAH-----ELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNL 686

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T++  ID   K+ R+D    + SKMLE     NVV Y+ ++DG  K      A+ +  +
Sbjct: 687 YTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLK 746

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           M E   +PN+            +G+  + ++L+  M   G  P+ +    L ++
Sbjct: 747 MEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINH 800



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD  LK+  ++ +    P+++ Y  ++ G C + + DEA +L  K+      PN
Sbjct: 696 LFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPN 755

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID F K G+++    +F  M  KG   N +TY  LI+    +  +  A+ + +
Sbjct: 756 VVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLD 815

Query: 122 EM 123
           EM
Sbjct: 816 EM 817



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A KL  ++ ++G  P+++TY  +I G+    ++++ ++LF  +      PN IT+ +L
Sbjct: 738 DEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVL 797

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +D+A  +  +M +     +++++  +I+G+  SQ   ++  + +E+ EN  
Sbjct: 798 INHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF--SQEFITSIGLLDELSENES 855

Query: 129 SP 130
            P
Sbjct: 856 VP 857



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 82/180 (45%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD   K + ++ D G+  + +  +      C   + D+A ++  ++      P+  T++ 
Sbjct: 406 LDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSK 465

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   +++ A  +F +M   G   +V TY+ LID + K+  ++ A   ++EM    
Sbjct: 466 VIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKG 525

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            A +   A +L++ ML  G  P+ +  + L D + ++   ++ C
Sbjct: 526 CTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKAC 585



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 55/106 (51%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD + YN ++ G C  +  +EA+ +  ++      PN +T+ IL+    ++G++     +
Sbjct: 277 PDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRI 336

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            S M+ +G   N   ++ LI  Y KS++   A+ ++++M +    P
Sbjct: 337 LSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQP 382



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 20/186 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  L+LF  +  +G  P+ ITY  +I   CS   LDEA +L +++       + +
Sbjct: 768 KSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHIL 827

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +   +I+ F +E     +  +  ++ E         Y  LID Y K+  ++ A D+ EE+
Sbjct: 828 SHRKIIEGFSQE--FITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEI 885

Query: 124 CEN----------------NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
             +                N+S   A +  +A++LY SM+   ++P+  +L  L    ++
Sbjct: 886 SSSPSHAVSNKYLYASLIENLSH--ASKVDKALELYASMISKNVVPELSILVHLIKGLIK 943

Query: 168 SSGSQE 173
               QE
Sbjct: 944 VDKWQE 949



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 81/219 (36%), Gaps = 53/219 (24%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +++  L    ++   +   G  P+   +N++I  YC       A +LF+K+     +P  
Sbjct: 325 LRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGY 384

Query: 63  ITFTILIDAFCKE-----------------------------------------GRMDDA 81
           + + I I + C                                           G+ D A
Sbjct: 385 LVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQA 444

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  +M+ KG   +  TYS +I     +  ++ AF ++EEM  N I P++         
Sbjct: 445 FKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDS 504

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
              AG   +A + +D ML  G  P+ +  + L    L++
Sbjct: 505 FCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKA 543



 Score = 43.1 bits (100), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
            L+++C      + AL+  G+L D G +P   TYN +I  +   ++LD A  +  ++   
Sbjct: 181 FLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSY 240

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
               +  T +    + CK G+  +A  +  +  +  P  + V Y+ ++ G  ++   + A
Sbjct: 241 AFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFVP--DTVFYNRMVSGLCEASLFEEA 298

Query: 117 FDVYEEMCENNISPNIA 133
            D+   M  ++  PN+ 
Sbjct: 299 MDILHRMRSSSCIPNVV 315



 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 20/166 (12%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+ +  ++      P+++TY  ++ G     +L    ++   +      PN   F  
Sbjct: 295 FEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNS 354

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-------Y 120
           LI A+CK      A  +F KM++ G +   + Y+  I G   S   + + D+       Y
Sbjct: 355 LIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFI-GSVCSNEEQPSSDILDLVEKAY 413

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            EM +  +  N             AG+  +A ++   M+  G +PD
Sbjct: 414 SEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPD 459


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A K+F  +T RG+ P+ +TY  +I G C     ++A +LF ++      P+
Sbjct: 208 LYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPD 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+    L+D FCK GRM +A  +     + G    +  YS LIDG F+++    AF++Y 
Sbjct: 268 SVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYA 327

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M + NI P+I            AG+  +A++L  SM   GI PD
Sbjct: 328 NMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPD 372



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 13/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M+ ++     A  ++ ++      P++ T+  ++ G     R  +A ++F+ +T   + P
Sbjct: 172 MMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+TILI   C+ G  +DA  +F +M   G   + V ++ L+DG+ K   M  AF++ 
Sbjct: 232 NRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELL 291

Query: 121 EEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
               ++     + G            R T+A +LY +ML+  I PD ++L T+    L  
Sbjct: 292 RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPD-IILYTILIQGLSK 350

Query: 169 SGSQEHCI 176
           +G  E  +
Sbjct: 351 AGKIEDAL 358



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ ALKL   +  +G+ PD   YN +I   C    L+E   L  +++  +  P+
Sbjct: 348 LSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPD 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T TILI + C+ G +  A  +F ++ + G   +V T++ LIDG  KS  +K A  +  
Sbjct: 408 ACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLH 467

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNG 150
           +M     +           + +D+M+++G
Sbjct: 468 KMEVGRPASLFLRLAHSGNRSFDTMVQSG 496



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K      D G  PDI++YN +I G+C    +D A++L   L    L P+S+T+  LI+
Sbjct: 501 AYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGLSPDSVTYNTLIN 560

Query: 71  AFCKEGRMDDATMMFSKM--LEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVY 120
              + GR ++A  +F         P    +++T+SC      + + +  AF+++
Sbjct: 561 GLHRVGREEEAFKLFYAKDDFRHSPAVYRSLMTWSC------RRRKLLVAFNLW 608



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 39/161 (24%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----------------- 53
           A ++F ++   G  P + T+N +I G C    L EA  L  K+                 
Sbjct: 427 AEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSGN 486

Query: 54  ----TCVQ----LK--------------PNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
               T VQ    LK              P+ +++ +LI+ FC+EG +D A  + + +  K
Sbjct: 487 RSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLK 546

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           G   + VTY+ LI+G  +    + AF ++    +   SP +
Sbjct: 547 GLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAV 587



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 39/177 (22%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA---VQLFEKLTCV----------- 56
           A KLF ++   G  PD + +N ++ G+C L R+ EA   ++LFEK   V           
Sbjct: 252 ARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLID 311

Query: 57  ---------------------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                                 +KP+ I +TILI    K G+++DA  +   M  KG   
Sbjct: 312 GLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITP 371

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIM 152
           +   Y+ +I        ++    +  EM E    P+          L  SM RNG++
Sbjct: 372 DTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTI----LICSMCRNGLV 424



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 41  NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           N  D   Q  E+L    +  +S  F +LI A+ K G  + A   F +M E   + +V TY
Sbjct: 106 NGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTY 165

Query: 101 SCLIDGYFKSQN-MKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSML 147
           + ++    +       AF VY EM + N SPN+             GR ++A +++D M 
Sbjct: 166 NVILRIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMT 225

Query: 148 RNGIMPDGLLLSTL 161
             GI P+ +  + L
Sbjct: 226 GRGISPNRVTYTIL 239



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 19/169 (11%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD  T+  +IC  C    + +A ++F ++      P+  TF  LID  CK G + +A ++
Sbjct: 406 PDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLL 465

Query: 85  FSKMLEKGPKANVV-----TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------ 133
             KM E G  A++      + +   D   +S ++  A+       +   SP+I       
Sbjct: 466 LHKM-EVGRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLI 524

Query: 134 ------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                 G    A++L + +   G+ PD +  +TL +  L   G +E   
Sbjct: 525 NGFCREGDIDGALKLLNVLQLKGLSPDSVTYNTLIN-GLHRVGREEEAF 572



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +D ALKL   L  +GL PD +TYNT+I G   + R +EA +LF      +  P   
Sbjct: 529 REGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSP--A 586

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEK 91
            +  L+   C+  ++  A  ++ K L+K
Sbjct: 587 VYRSLMTWSCRRRKLLVAFNLWMKYLKK 614



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC--LIDGYFKSQNMKSAFDVYEE 122
           +TI +   C+ GR  +A M+FS + EK  K  V   SC  LI G  K + + +A DV+  
Sbjct: 657 YTIWLIGLCQSGRFHEALMVFSVLREK--KILVTPPSCVKLIHGLCKREQLDAAIDVFLY 714

Query: 123 MCENNI 128
             +NN 
Sbjct: 715 TLDNNF 720


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++AA +LF Q+   G+ P+++T NT++ G C   R++ AV+ F ++    LK N++
Sbjct: 428 KASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAV 487

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI AFC    ++ A  +F +MLE G   + + Y  LI G  ++  +  A  V  +M
Sbjct: 488 TYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKM 547

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            E   SP+I              +  EA ++   M   GI PDG+  +TL  +
Sbjct: 548 KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISH 600



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 18/178 (10%)

Query: 2   LIKECHLDAALKLF-----GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TC 55
           L K   +D AL++F     G+     +EPD+ITYNT+I G C + R +E + L E++ + 
Sbjct: 350 LCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQ 409

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
            +  PN++T+  LID +CK   ++ A  +F +M + G   NVVT + L+DG  K   +  
Sbjct: 410 PRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRING 469

Query: 116 AFDVYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           A + + EM    +  N                  +AM+L+D ML  G  PD ++  TL
Sbjct: 470 AVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTL 527



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 93/167 (55%), Gaps = 20/167 (11%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-----LKPNSITFTIL 68
           L  ++ +  ++P+++T+  +I   C   R+DEA+++FEK+   +     ++P+ IT+  L
Sbjct: 327 LLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTL 386

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ID  CK GR ++   +  +M  + P+   N VTY+CLIDGY K+  +++A +++++M ++
Sbjct: 387 IDGLCKVGRQEEGLGLVERMRSQ-PRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD 445

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+             GR   A++ ++ M   G+  + +  + L
Sbjct: 446 GVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTAL 492



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ +TYN +I GYC  + ++ A +LF+++    + PN +T   L+D  CK GR++ A   
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           F++M  KG K N VTY+ LI  +    N++ A ++++EM E   SP+             
Sbjct: 474 FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQ 533

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
           AG+   A  +   M   G  PD
Sbjct: 534 AGKLDRASFVLSKMKEAGFSPD 555



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 90/162 (55%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A++ F ++  +GL+ + +TY  +I  +C++N +++A++LF+++      P++I
Sbjct: 463 KHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAI 522

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI    + G++D A+ + SKM E G   ++V+++ LI+G+ +   +  A+++ +EM
Sbjct: 523 VYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM 582

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
               I P+              G  + A +L   M++ G++P
Sbjct: 583 ENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVP 624



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  +  ++ + G  PDI+++N +I G+C  N+LDEA ++ +++    +KP+ +T+  
Sbjct: 537 LDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNT 596

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           LI  F K G    A  +  KM+++G    VVTY  LI  Y  + N+  A  ++ +M   +
Sbjct: 597 LISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTS 656

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            + PN               +   A+ L D M   G+ P+
Sbjct: 657 KVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPN 696



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A++LF ++ + G  PD I Y T+I G     +LD A  +  K+      P+ ++F 
Sbjct: 501 NIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFN 560

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI+ FC++ ++D+A  M  +M   G K + VTY+ LI  + K+ +  +A  + ++M + 
Sbjct: 561 VLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKE 620

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
            + P +             G   EAM+++  M     +P
Sbjct: 621 GLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVP 659



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNS 62
           K      A +L  ++   GL P ++TY  +I  YC    LDEA+++F  ++   ++ PN+
Sbjct: 603 KTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNT 662

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + + ILI++ C++ ++D A  +   M  KG K N  T++ +  G  +   +  AF++ + 
Sbjct: 663 VIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDR 722

Query: 123 MCENNISPN 131
           M E+  +P+
Sbjct: 723 MTEHACNPD 731



 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRL------DEAVQLFEK 52
           +L ++  +D AL L  ++     E  P+  T + +       +++      +E V L  K
Sbjct: 201 VLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSK 260

Query: 53  LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
               ++ PNSI  T LI   C+ GR D A  +   +++ G      + + L+    +++ 
Sbjct: 261 FAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRARE 320

Query: 113 MKSAFDVYEEMCENNISPNIAG------------RPTEAMQLYDSM---LRNGIM--PDG 155
            K    +  EM E +I PN+              R  EA+++++ M     NG +  PD 
Sbjct: 321 FKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDV 380

Query: 156 LLLSTLADYNLQSSGSQE 173
           +  +TL D  L   G QE
Sbjct: 381 ITYNTLID-GLCKVGRQE 397



 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           +LD A+K+F  ++    + P+ + YN +I   C  N++D A+ L + +    +KPN+ TF
Sbjct: 641 NLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTF 700

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL---IDGYFKSQNMKSAFDVYE 121
             +     ++  +  A  +  +M E     + +T   L   +    ++  +KS    YE
Sbjct: 701 NAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAKLKSFVQGYE 759


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   +D AL++F  +  RG  PD++ YNT+I G+C + R+ EA  + +++    L P+
Sbjct: 567 FVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPS 626

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LID +CK G +D A    S+M+ K  + NV+TY+ LIDG   +     A  ++ 
Sbjct: 627 VVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWN 686

Query: 122 EMCENNISPN 131
           EM     SPN
Sbjct: 687 EMRGKGCSPN 696



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A     ++   G  PDI+ Y+  I G+  +  +D+A+++F  +      P+ + +  LI+
Sbjct: 541 ACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLIN 600

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK  R+ +A  +  +M+ KG   +VVTY+ LIDG+ K+ ++  AF     M      P
Sbjct: 601 GFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREP 660

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+            AGRP +A+ L++ M   G  P+
Sbjct: 661 NVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPN 696



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +  ++  +GL P ++TYN +I G+C    +D+A     ++   + +PN IT+T LID
Sbjct: 611 AHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLID 670

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR DDA  ++++M  KG   N +++  LI G  K     +A   + EM E     
Sbjct: 671 GLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERETPD 730

Query: 131 NIA-----------GRPTEAMQLYDSMLRNGIMPDGL 156
            I              PT A ++   M+  G  PD L
Sbjct: 731 TIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPL 767



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 1/128 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A     ++  +  EP++ITY T+I G C+  R D+A+ L+ ++      PN I
Sbjct: 639 KNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRI 698

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +F  LI   CK G  D A + F +M E+    + + Y  LI  +  ++N   AF++ +EM
Sbjct: 699 SFIALIHGLCKCGWPDAALLYFREMGER-ETPDTIVYVALITSFISNKNPTLAFEILKEM 757

Query: 124 CENNISPN 131
                 P+
Sbjct: 758 VAKGKFPD 765



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 17/173 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++EC+L     L  ++   G  P   T+N+I    C    +  A+ +  ++     +P  
Sbjct: 468 LEECYL-----LLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWI 522

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +T+L+   CK  R  +A    ++M+ +G   ++V YS  IDG+ K + +  A +++ +
Sbjct: 523 KHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRD 582

Query: 123 MCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +C     P++              R +EA  + D M+  G++P  +  + L D
Sbjct: 583 ICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLID 635



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D AL +F ++  RG   D    + ++  +     +D+A +L E++  + ++ N  TF +
Sbjct: 210 FDKALSVFNEIYGRGW-VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCV 268

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F ++ R+D A  +F KM + G   +V  Y  LI G    + ++ A  +  EM E  
Sbjct: 269 LIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELG 328

Query: 128 ISPNI 132
           I P+I
Sbjct: 329 IDPDI 333



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 13/160 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ D G EPD  T  +++  YC+  + D+A+ +F ++         +  +IL+  F K G
Sbjct: 184 EMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHV-LSILVLTFSKCG 242

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
            +D A  +  +M + G + N  T+  LI G+ +   +  A  ++++M ++  +P++    
Sbjct: 243 EVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYD 302

Query: 133 -------AGRPTE-AMQLYDSMLRNGIMPDGLLLSTLADY 164
                  A +  E A+ L   M   GI PD  +LS L  Y
Sbjct: 303 ALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPY 342



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P   +++ +I G C+  +LD A+ LF  +  V  K N + +  LID      R+++  
Sbjct: 413 VRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECY 472

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
           ++  +M   G +    T++ +     + +++  A D+  EM  +   P I          
Sbjct: 473 LLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQL 532

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               R  EA      M+R G +PD +  S   D
Sbjct: 533 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAID 565



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 90/202 (44%), Gaps = 31/202 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +++  +D AL+LF ++   G  PD+  Y+ +I G C+   +++A+ L  ++  + + P+
Sbjct: 273 FVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPD 332

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               + LI  +C E  +D   ++  ++ +   +A ++ Y+ +++G    +++  A+ +  
Sbjct: 333 IQILSKLI-PYCSE-EVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLX 390

Query: 122 EMCENNISPNI----------------------------AGRPTEAMQLYDSMLRNGIMP 153
            M  +N + N                              G+   A+ L+  M+R G   
Sbjct: 391 AMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQ 450

Query: 154 DGLLLSTLADYNLQSSGSQEHC 175
           + LL + L D  L +S   E C
Sbjct: 451 NVLLYNNLID-KLSNSNRLEEC 471



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 16/130 (12%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC----------------VQLKP 60
           +L D   E  ++ YN+++ G  +   +D+A  L   +T                   ++P
Sbjct: 356 RLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRP 415

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + +F+I+ID  C  G++D A  +F  M+  G K NV+ Y+ LID    S  ++  + + 
Sbjct: 416 XTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLL 475

Query: 121 EEMCENNISP 130
           +EM  +   P
Sbjct: 476 KEMKGSGFRP 485



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++ D G+  +  T+  +I G+   +R+D+A+QLF+K+      P+   +  
Sbjct: 244 VDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDA 303

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           LI   C +  ++ A  + S+M E G   ++   S LI
Sbjct: 304 LIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 340


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  H+  A++    + + G +PDI+TYNT+I G C   ++ EA QL E+     L PN  
Sbjct: 321 KHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKF 380

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++T LI A+CK+G  D A+    +M E+G K ++VTY  L+ G   +  +  A  + E+M
Sbjct: 381 SYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKM 440

Query: 124 CENNISPNIAG-------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  + P+ AG             +   A  L   ML   ++PD  + +TL D
Sbjct: 441 LERGVFPD-AGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVD 492



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+  +LD A KLF    ++G+ P I+ YN +I GYC    + +A+    ++    L P+
Sbjct: 494 FIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPD 553

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ +ID + K+  +D A  MF +M++   K NVVTY+ LI+G+ +  ++  +  ++ 
Sbjct: 554 EFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFR 613

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + PN+              +  +A   ++ ML N  +P+ +  + L +
Sbjct: 614 EMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVN 667



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 26/185 (14%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+  LD A K+F ++     +P+++TY ++I G+C    L  ++++F ++    L PN 
Sbjct: 565 VKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNV 624

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS------------ 110
           +T++ILI +FCKE ++ DA   F +ML      N VT++ L++G+ K+            
Sbjct: 625 VTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEF 684

Query: 111 -QNMKSAF-DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
            +N +S F + +  M  +  +P  A            G    A+QL + M   G +PD +
Sbjct: 685 QENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSV 744

Query: 157 LLSTL 161
               L
Sbjct: 745 SFVAL 749



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+   KL      +G  P+II YNT+I GYC    ++ A  LF +L      P 
Sbjct: 214 LCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPT 273

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+ FCK+G       +  +M  +G   NV  Y+ +ID  +K  ++  A +  E
Sbjct: 274 VETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIE 333

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M E    P+I             G+ +EA QL +  L  G+MP+
Sbjct: 334 GMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPN 378



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L AA  L  ++ D+ + PD   Y T++ G+     LDEA +LFE      + P 
Sbjct: 459 LCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPG 518

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I  +CK G M DA    ++M ++    +  TYS +IDGY K  ++  A  ++ 
Sbjct: 519 IVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFR 578

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +    PN+             G    +++++  M   G++P+ +  S L
Sbjct: 579 EMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSIL 630



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   D A     ++T+RG +PD++TY  ++ G      +D A+ + EK+    + P++ 
Sbjct: 391 KQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAG 450

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            + IL+   CK+ ++  A ++ ++ML++    +   Y+ L+DG+ ++ N+  A  ++E  
Sbjct: 451 IYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELT 510

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  ++P I G               +AM   + M +  + PD    ST+ D
Sbjct: 511 IEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVID 562



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    +D AL +  ++ +RG+ PD   YN ++ G C   +L  A  L  ++    + P+
Sbjct: 424 LVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPD 483

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  L+D F + G +D+A  +F   +EKG    +V Y+ +I GY K   MK A     
Sbjct: 484 AFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACIN 543

Query: 122 EMCENNISPN 131
            M + +++P+
Sbjct: 544 RMKKRHLAPD 553



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 18/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+    A  +L  ++  RGL  ++  YNTII        + +AV+  E +     KP+ +
Sbjct: 286 KKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIV 345

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   C++G++ +A  +  + L KG   N  +Y+ LI  Y K      A +   EM
Sbjct: 346 TYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEM 405

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            E    P+            +AG    A+ + + ML  G+ PD  +      YN+  SG
Sbjct: 406 TERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGI------YNILMSG 458



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L  FG++   G  P    YN+I+   C       A+QL  K+T     P+S++F  L+  
Sbjct: 693 LNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHG 752

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----N 126
            C EGR  +   + S  L +      V YS ++D Y   Q    A  + + M E     +
Sbjct: 753 VCLEGRSKEWKNIVSCNLNERELQIAVNYSSILDQYL-PQGTSEASVILQTMFEECQSHS 811

Query: 127 NISPNIAGRPTEAMQLYDS------MLRNGI 151
            +  NI    +  + L+D+      +LRNG+
Sbjct: 812 KVGDNIQVSFSNQLYLHDTKAGVTLLLRNGL 842



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKL--------TCVQLKPNSITFTILIDAFCKEG 76
           PD+I  N+++     L R++ A +L++++         CV    ++ +  I++   CKEG
Sbjct: 163 PDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCV----DNYSTCIMVKGLCKEG 218

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           ++++   +      +G   N++ Y+ LIDGY K  +M+ A  ++ E+      P +
Sbjct: 219 KLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTV 274


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE ++D+AL ++ ++ + G+ P+++TY ++I G+C  NR+D A++  +++    L+ +
Sbjct: 579 FIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELD 638

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++ LID FCK   M+ A  +F ++LE G   N + Y+ +I G+    NM++A   Y+
Sbjct: 639 VTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYK 698

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  + I  ++             GR   A  LY  ML  GI+PD +    L +
Sbjct: 699 KMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVN 752



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 15/178 (8%)

Query: 1   MLIKEC---HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  C   ++D A  +F  +  R L+P+++TY+ +I G       ++A+ LF+++  + 
Sbjct: 470 MILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN 529

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P   TF  +I+  CK G+M +A       LE+G   + +TY+ ++DG+ K  N+ SA 
Sbjct: 530 IAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSAL 589

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            VY EMCE  +SPN+            + R   A++  D M   G+  D    S L D
Sbjct: 590 AVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALID 647



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K    + A KLF +  D G+  +I TYN ++   C   ++DEA  L + +    + PN 
Sbjct: 406 LKAPLWEEASKLFDEAVDCGV-ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNV 464

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  +I   C++G MD A+ +FS ML +  K NVVTYS LIDG FK  + + A D++++
Sbjct: 465 VSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQ 524

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M   NI+P               G+ +EA     + L  G +P  +  +++ D
Sbjct: 525 MLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVD 577



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +++A  LF +L + GL P+ I YN++I G+  LN ++ A+  ++K+   ++  +  
Sbjct: 651 KRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLG 710

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID   KEGR+  A+ ++ +ML KG   +++T+  L++G      +++A  + EEM
Sbjct: 711 TYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEM 770

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
              N++P++             G   EA  L+D ML  G++PD +    L +   +   S
Sbjct: 771 DRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRS 830



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A        + G  P  +TYN+I+ G+     +D A+ ++ ++    + PN
Sbjct: 544 LCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPN 603

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI+ FCK  R+D A     +M EKG + +V  YS LIDG+ K ++M+SA D++ 
Sbjct: 604 VVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFF 663

Query: 122 EMCENNISPN 131
           E+ E  +SPN
Sbjct: 664 ELLEVGLSPN 673



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 46/201 (22%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP------ 60
           +LD+AL LF ++T+ GL P+ +TY+ +I G C+   +++A +L+ ++    + P      
Sbjct: 340 NLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVN 399

Query: 61  ----------------------------NSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                                       N  T+ I++   CK G+MD+A  +   M+ +G
Sbjct: 400 SLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG 459

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              NVV+Y+ +I G+ +  NM  A  V+ +M   ++ PN+             G   +A+
Sbjct: 460 MVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKAL 519

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
            L+D ML   I P     +T+
Sbjct: 520 DLFDQMLSLNIAPTDFTFNTI 540



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 88/163 (53%), Gaps = 11/163 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + + ++  AL+L  ++ + G   +++   +++ GYC+   LD A+ LF K+T   L PN 
Sbjct: 301 VAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNK 360

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+++LI+  C  G ++ A+ ++++M   G   +V   + L+ GY K+   + A  +++E
Sbjct: 361 VTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDE 420

Query: 123 MCE----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
             +    N  + NI        G+  EA  L D+M+  G++P+
Sbjct: 421 AVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPN 463



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 65/109 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  L  A  L+ ++  +G+ PDIIT++ ++ G C+  +L+ A ++ E++    + P+
Sbjct: 719 LLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPS 778

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
            + +  LI  + +EG + +A  +  +ML++G   + VTY  LI+G FK 
Sbjct: 779 VLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKG 827



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 71/129 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ + +  L+L  ++ +RG  P   T+ ++I    +   + EA++L E++       N +
Sbjct: 267 KKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLV 326

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             T L+  +C +G +D A  +F+K+ E G   N VTYS LI+G   S N++ A ++Y +M
Sbjct: 327 VATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQM 386

Query: 124 CENNISPNI 132
             N I P++
Sbjct: 387 KLNGIPPSV 395



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE  ++ A + F +  +RG++ D   Y+ II   C     +  ++L E++      P+ 
Sbjct: 231 LKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSE 290

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            TFT +I A   +G M +A  +  +M+  G   N+V  + L+ GY    N+ SA +++ +
Sbjct: 291 ATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNK 350

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + E+ + PN             +G   +A +LY  M  NGI P    +++L
Sbjct: 351 ITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSL 401



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+   ++ A+  F  +  + + P +   N ++      N + E   L+ K+    +  + 
Sbjct: 161 IRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDH 220

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  +++ A  KEGR+++A   F +  E+G K +   YS +I    K  N     ++ EE
Sbjct: 221 FTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEE 280

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
           M E    P+ A            G   EA++L + M+  G  P  L+++T
Sbjct: 281 MKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCG-KPMNLVVAT 329


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 90/159 (56%), Gaps = 14/159 (8%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSIT 64
            + AAL +  ++ +RG + P+  TY T+I G+C + R+DEAV++F E LT  ++KP ++ 
Sbjct: 534 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 593

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI  +C +G++D A +   +M+E+G    V TY+ L+   F       A+++ EEM 
Sbjct: 594 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 653

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
              ++P++             G   +A++++++M R G+
Sbjct: 654 GKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 692



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 91/163 (55%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++  +GL PD+ TYN +I G+C    + +A+++FE ++   ++   +T+T LI 
Sbjct: 645 AYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 704

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K+G++ +   +F + + +G + ++V Y+ LI+ +  S N+  AF++  EM +  I+P
Sbjct: 705 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 764

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +            + GR  EA +L D M   GI PD +  +TL
Sbjct: 765 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 807



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +    KLF +   RG+ PD++ YN +I  + +   +D A ++  ++   ++ P+
Sbjct: 706 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 765

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+   C  GR+D+A  +  +M E+G + ++VTY+ LI GY    ++K A  +  
Sbjct: 766 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 825

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM     +P +             G+  +A  +   M+ NGI PD
Sbjct: 826 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 870



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 18/158 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPNSITFTILI 69
           AL+L  Q+      P+ +TYNT+I G+CS  R+  A+ +  ++     + PN  T+  +I
Sbjct: 507 ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 562

Query: 70  DAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             +CK GR+D+A  +F +ML KG  K   V Y+ LI GY     + +A    + M E  +
Sbjct: 563 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 622

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +  +A            GR TEA +L + M   G+ PD
Sbjct: 623 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPD 660



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K   +D A+K+F ++  +G ++P+ + YN +I GYC   +LD A+   +++    +    
Sbjct: 567 KVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTV 626

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ +L+ A   +GR  +A  +  +M  KG   +V TY+ LI+G+ K  N+K A +++E 
Sbjct: 627 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFEN 686

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M    +   +             G+  E  +L+D  +R GI PD +L + L
Sbjct: 687 MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNAL 737



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A KL  ++T+RG++PD++TYNT+I GY     + +A+++  ++      P  +T+ 
Sbjct: 781 RVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 840

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            LI   CK G+ DDA  M  +M+E G   +  TY  LI+G
Sbjct: 841 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 880



 Score = 39.7 bits (91), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++ ++G  P ++TYN +I G C   + D+A  + +++    + P+  T+  LI+
Sbjct: 820 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 879

Query: 71  AFCKE 75
               E
Sbjct: 880 GLTTE 884


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTI 67
           + AL+L G ++  G EPDI+TYNT+I G+C  N L++A ++F+ +    +  P+ +T+T 
Sbjct: 223 EKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTS 282

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +CK G+M +A+ +   ML  G     VT++ L+DGY K+  M +A ++  +M    
Sbjct: 283 MISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFG 342

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G+ ++  +L++ M   G+ P+    S L +
Sbjct: 343 CFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILIN 390



 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++ G++   G  PD++T+ ++I GYC + ++ +  +L+E++    + PN+ T++ILI+
Sbjct: 331 AEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILIN 390

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C E R+  A  +  ++  K        Y+ +IDG+ K+  +  A  + EEM +    P
Sbjct: 391 ALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKP 450

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +            + GR  EA+ ++  M+  G  PD + +S+L    L++  ++E
Sbjct: 451 DKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKE 505



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 4   KECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K   L+ A ++F  +    +  PD++TY ++I GYC   ++ EA  L + +  + + P +
Sbjct: 253 KSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTN 312

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TF +L+D + K G M  A  +  KM+  G   +VVT++ LIDGY +   +   F ++EE
Sbjct: 313 VTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEE 372

Query: 123 MCENNISPN 131
           M    + PN
Sbjct: 373 MNARGMFPN 381



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L  A +L GQL  + + P    YN +I G+C   +++EA  + E++   + KP+
Sbjct: 392 LCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPD 451

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF---D 118
            ITFTILI   C +GRM +A  +F KM+  G   + +T S L+    K+   K A+    
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQ 511

Query: 119 VYEEMCENNISP 130
           +  +   NN+ P
Sbjct: 512 IARKGQSNNVVP 523



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 15/176 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ A+KLF +        D  T+N +I G C + + ++A++L   ++    +P+
Sbjct: 181 LVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPD 240

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDV 119
            +T+  LI  FCK   ++ A+ MF K ++ G     +VVTY+ +I GY K+  M+ A  +
Sbjct: 241 IVTYNTLIQGFCKSNELNKASEMF-KDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSL 299

Query: 120 YEEMCENNISP-NI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++M    I P N+           AG    A ++   M+  G  PD +  ++L D
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLID 355



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 13/149 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           +  N+++     L+R+++A++LF++    Q   ++ TF ILI   C  G+ + A  +   
Sbjct: 172 MVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGV 231

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNI------------AG 134
           M   G + ++VTY+ LI G+ KS  +  A ++++++   ++ SP++            AG
Sbjct: 232 MSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAG 291

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  EA  L D MLR GI P  +  + L D
Sbjct: 292 KMREASSLLDDMLRLGIYPTNVTFNVLVD 320



 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TYN +    C     D A Q+FE +    + PN+     L+ +F ++G++  AT +  + 
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-----CENNISPNI-------AGRP 136
            E      VV  + L++   K   ++ A  +++E      C +  + NI        G+ 
Sbjct: 165 FEVEGCCMVV--NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKA 222

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
            +A++L   M   G  PD +  +TL
Sbjct: 223 EKALELLGVMSGFGCEPDIVTYNTL 247


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 74/127 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H+  AL LF ++ + G  PDI TY T+I  YC   +++E+ +LF+K   ++L P   
Sbjct: 443 KQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQ 502

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +I  +CK G+   A  +F +M++ G +A+ +TY  LI G  K   ++ A  +YE M
Sbjct: 503 TYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGM 562

Query: 124 CENNISP 130
            +  + P
Sbjct: 563 LDKRLVP 569



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 11  ALKLF-GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A K+F G +T  GL PD  ++  +I G C   R++E   L   +       ++ T T+++
Sbjct: 168 ARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIV 227

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC++GR  D + +F +MLE G   NVV Y+  IDG  K   +K AF V EEM    + 
Sbjct: 228 RVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLK 287

Query: 130 PNI 132
           PN+
Sbjct: 288 PNV 290



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 69/129 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A  L G++ ++GL P+  TY T+I G+C     + A +L  K+     +PN  
Sbjct: 338 KEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIY 397

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID  CK+G++ +A  +      +G + + VTY+ +I  + K  ++  A D++  M
Sbjct: 398 TYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRM 457

Query: 124 CENNISPNI 132
            EN   P+I
Sbjct: 458 AENGCHPDI 466



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 15/167 (8%)

Query: 9   DAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + A +LF +L      +P++ TY  +I GYC   +L  A  L  ++    L PN+ T+T 
Sbjct: 307 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTT 366

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN- 126
           LI   CKEG  + A  + +KM  +G + N+ TY+ LIDG  K   ++ A+ V   M  N 
Sbjct: 367 LISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVL-RMANNQ 425

Query: 127 -----NISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 ++  +        G  T A+ L++ M  NG  PD    +TL
Sbjct: 426 GLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTL 472



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A K+     ++GL+ D +TY  +I  +C    +  A+ LF ++      P+
Sbjct: 406 LCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPD 465

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LI  +C++ +M+++  +F K L         TY+ +I GY K     SA  V+E
Sbjct: 466 IHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFE 525

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            M +N    +       I+G     R  EA  LY+ ML   ++P  +   TLA
Sbjct: 526 RMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLA 578



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 13/149 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D  T   I+  +C   R  +  +LF ++  +   PN + +T  ID  CK   +  A  + 
Sbjct: 219 DNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVL 278

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-NNISPNI------------ 132
            +M+ KG K NV T++ LI+G  K    + AF ++ ++ + ++  PN+            
Sbjct: 279 EEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCK 338

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            G+   A  L   M+  G+ P+    +TL
Sbjct: 339 EGKLARAEMLLGRMVEQGLAPNTNTYTTL 367



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL++F ++   G + D ITY  +I G C  +RL+EA  L+E +   +L P  +T   L 
Sbjct: 519 SALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLA 578

Query: 70  DAFCKEGRMDDATMMFSKM--LEKGPKANVVTYSCLIDGYFKSQN--MKSAFDV 119
             +C+  +   A  +  ++    K    NV+       G+ +  +  +K A DV
Sbjct: 579 FEYCRREKAVVAVSILDRLDKRRKNHTVNVLVRKLSAIGHVEDASLFLKKALDV 632


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 31/194 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +  ++  RG+EP+++TY  ++ G+C L+ +DEAV++F+ + C    PN
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPN 340

Query: 62  SITFTILIDAFCKEGR-------------------MDDATMMFSKMLEKGPKANVVTYSC 102
            I++  LI+ +CK  R                   MD+A  +F  M+ KG   NV++Y+ 
Sbjct: 341 VISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNT 400

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNG 150
           LI+GY K Q +  A  ++ EMC   + P+       I G     R  +A+ L+  M+   
Sbjct: 401 LINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 460

Query: 151 IMPDGLLLSTLADY 164
            +P+ +    L DY
Sbjct: 461 QIPNLVTYRILLDY 474



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 31/193 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ PDI TYN++I   C+L        L  ++   ++ P+
Sbjct: 211 LCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPD 270

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  ++DA CKEG++ +A  +  KM+++G + NVVTY+ L+DG+     M  A  V++
Sbjct: 271 VVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFD 330

Query: 122 EMCENNISPNIAGRPT-------------------------------EAMQLYDSMLRNG 150
            M      PN+    T                               EA++++D+M+  G
Sbjct: 331 TMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKG 390

Query: 151 IMPDGLLLSTLAD 163
            MP+ +  +TL +
Sbjct: 391 CMPNVISYNTLIN 403



 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+ P+I T + +I  +C LNR+  A  +  K+  +  +P++ TFT
Sbjct: 76  HHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFT 135

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F KM+ +G + +VVTY  LI+G  K  N  +A  +   M + 
Sbjct: 136 TLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK 195

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
           N  PN+              + TEA  L+  M+  GI PD
Sbjct: 196 NCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPD 235



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 89/160 (55%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+K+F  +  +G  P++I+YNT+I GYC + R+D+A+ LF ++   +L P+++T++
Sbjct: 375 NMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYS 434

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C   R+ DA  +F +M+      N+VTY  L+D   K++ +  A  + + +  +
Sbjct: 435 TLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGS 494

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+ P+I            AG    A  L+ ++   G+ PD
Sbjct: 495 NLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 534



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++   G  PD++TY T+I G C +     A++L   +     +PN   
Sbjct: 144 EGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFA 203

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +ID+ CK+ ++ +A  +FS+M+ KG   ++ TY+ LI         K    +  EM 
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV 263

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ I P++             G+ TEA  + D M++ G+ P+ +  + L D
Sbjct: 264 DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMD 314



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  +  ++   G +PD  T+ T+I G C   ++ EA+ LF+K+     +P+ 
Sbjct: 107 CHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDV 166

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G    A  +   M++K  + NV  Y+ +ID   K + +  AF+++ E
Sbjct: 167 VTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSE 226

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + IMPD +  +T+ D
Sbjct: 227 MVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 279



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 31/187 (16%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C       L  ++ D  + PD++++NT++   C   ++ EA  + +K+    ++PN +T+
Sbjct: 250 CEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTY 309

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-------------- 111
           T L+D  C    MD+A  +F  M+ KG   NV++Y+ LI+GY K Q              
Sbjct: 310 TALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDX 369

Query: 112 -----NMKSAFDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
                NM  A  V++ M      PN+              R  +AM L+  M R  ++PD
Sbjct: 370 XCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPD 429

Query: 155 GLLLSTL 161
            +  STL
Sbjct: 430 TVTYSTL 436



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +  AA++L G +  +  +P++  YNTII   C   ++ EA  LF ++    + P+
Sbjct: 176 LCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPD 235

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI A C          + ++M++     +VV+++ ++D   K   +  A DV +
Sbjct: 236 IFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVD 295

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +  + PN+                 EA++++D+M+  G MP+ +  +TL +
Sbjct: 296 KMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLIN 349



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LFG++  + L PD +TY+T+I G C + RL +A+ LF ++      PN +T+ I
Sbjct: 411 IDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRI 470

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK   + +A  +   +       ++   +  IDG  ++  +++A D++  +    
Sbjct: 471 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 530

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + P++             G   EA +L+  M  NG   +G + +T+ 
Sbjct: 531 LQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 577



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L  A+ L   +    L+PDI   N  I G C    L+ A  LF  L+   L+P+
Sbjct: 475 LCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 534

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I+I+  C+ G +D+A+ +F +M E G   N   Y+ +  G+ ++     A  + +
Sbjct: 535 VWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQ 594

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM     S +        M L+  ML +    DGL
Sbjct: 595 EMVARGFSAD-----ASTMTLFVKMLSD----DGL 620


>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Glycine max]
          Length = 626

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 9/161 (5%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+   D   +   ++ + G EPD++TYNT++  YC   RL++A  L++ +    + P
Sbjct: 257 VLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMP 316

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N IT T+L++  C+EG++ +A  +F +M+ +G   +VV+Y+ L+ GY +   M+    + 
Sbjct: 317 NLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLL 376

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EM  N I P+          +   ++  G   DG LLS L
Sbjct: 377 HEMIGNGICPD---------SVTCRLIVEGFARDGKLLSAL 408



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   ++  L  F +  +    P++I  N ++ G    N + +   ++E++  + +  N+
Sbjct: 189 VKAGMVEKGLATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNA 248

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            TF I+    CK+G  D  T    KM E+G + ++VTY+ L++ Y K + ++ AF +Y+ 
Sbjct: 249 YTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKI 308

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           M    + PN+             G+  EA QL+  M+  GI PD +  +TL 
Sbjct: 309 MYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLV 360



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A  L+  +  RG+ P++IT+  ++ G C   ++ EA QLF ++    + P+ +
Sbjct: 295 KKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVV 354

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  L+  +C+EG+M     +  +M+  G   + VT   +++G+ +   + SA +   E+
Sbjct: 355 SYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCRLIVEGFARDGKLLSALNTVVEL 414

Query: 124 CENNIS-PN-----------IAGRPTEAMQLYDSMLRNGIMP 153
               I  P            I GRP  A      + ++G MP
Sbjct: 415 KRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRISQDGYMP 456



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A +LF Q+  RG++PD+++YNT++ GYC   ++     L  ++    + P+
Sbjct: 328 LCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPD 387

Query: 62  SITFTILIDAF-----------------------------------CKEGRMDDATMMFS 86
           S+T  ++++ F                                   C EGR   A     
Sbjct: 388 SVTCRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFLL 447

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------ 134
           ++ + G    + TY+ L++   K  N++ A  +  EM + ++  N+              
Sbjct: 448 RISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVN 507

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  EA  L + M+ +GI+PD
Sbjct: 508 RTLEAEGLLEEMVSSGILPD 527



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA     +++  G  P I TYN ++   C  N ++EA+ L  ++    +  N + +  +I
Sbjct: 441 AARSFLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVI 500

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----------FDV 119
              C+  R  +A  +  +M+  G   +V     LI+GY +   +  A          F V
Sbjct: 501 SCLCRVNRTLEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQV 560

Query: 120 YEEMCENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGL 156
           Y+    N +       G   E ++L D +L+ G + + L
Sbjct: 561 YDTESYNAVVKVFCDVGNVAELLELQDKLLKVGYVSNRL 599



 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 6   CHLDAALK---LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C ++  L+   L  ++   G+ PD+     +I GYC  N++D+AV L +         ++
Sbjct: 504 CRVNRTLEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQVYDT 563

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
            ++  ++  FC  G + +   +  K+L+ G  +N +T   +I G  K+
Sbjct: 564 ESYNAVVKVFCDVGNVAELLELQDKLLKVGYVSNRLTCKYVIHGLQKA 611



 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ AL L  ++  R +  +++ Y  +I   C +NR  EA  L E++    + P+     
Sbjct: 473 NVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTLEAEGLLEEMVSSGILPDVEISR 532

Query: 67  ILIDAFCKEGRMDDATMMF 85
            LI+ +C+E ++D A  + 
Sbjct: 533 ALINGYCEENKVDKAVSLL 551



 Score = 40.4 bits (93), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 12/115 (10%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N   F +LI A+ K G ++     F + +E     NV+  +CL+ G  +   +   + VY
Sbjct: 177 NPAIFDMLIKAYVKAGMVEKGLATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVY 236

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM    I  N              G   +  +  D M   G  PD +  +TL +
Sbjct: 237 EEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVN 291



 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 48/103 (46%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           Y+ +I   C   R   A     +++     P   T+  L+++ CK   +++A ++ S+M+
Sbjct: 426 YDYLIVALCIEGRPFAARSFLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMV 485

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           ++    N+V Y  +I    +      A  + EEM  + I P++
Sbjct: 486 KRSMILNLVAYRAVISCLCRVNRTLEAEGLLEEMVSSGILPDV 528


>gi|449452174|ref|XP_004143835.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 362

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 25/172 (14%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  Q+T+ G+EP++IT++T+I GYC +  L  A+ ++ ++    L P+ +T+T +ID
Sbjct: 128 ALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMID 187

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----- 125
             CK G M +A  ++S ML+ G   N  T SCL+DG  K   +  A +++ E  E     
Sbjct: 188 GHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPR 247

Query: 126 ---------NNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLL 157
                     +++ ++A           G+ ++A++L+  M R G+ PD ++
Sbjct: 248 CNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVI 299


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   +D AL++F  +  RG  PD++ YNT+I G+C + R+ EA  + +++    L P+
Sbjct: 607 FVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPS 666

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LID +CK G +D A    S+M+ K  + NV+TY+ LIDG   +     A  ++ 
Sbjct: 667 VVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWN 726

Query: 122 EMCENNISPN 131
           EM     SPN
Sbjct: 727 EMRGKGCSPN 736



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A     ++   G  PDI+ Y+  I G+  +  +D+A+++F  +      P+ + +  LI+
Sbjct: 581 ACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLIN 640

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK  R+ +A  +  +M+ KG   +VVTY+ LIDG+ K+ ++  AF     M      P
Sbjct: 641 GFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREP 700

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+            AGRP +A+ L++ M   G  P+
Sbjct: 701 NVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPN 736



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +  ++  +GL P ++TYN +I G+C    +D+A     ++   + +PN IT+T LID
Sbjct: 651 AHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLID 710

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR DDA  ++++M  KG   N +++  LI G  K     +A   + EM E     
Sbjct: 711 GLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERETPD 770

Query: 131 NIA-----------GRPTEAMQLYDSMLRNGIMPDGL 156
            I              PT A ++   M+  G  PD L
Sbjct: 771 TIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPL 807



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 1/128 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A     ++  +  EP++ITY T+I G C+  R D+A+ L+ ++      PN I
Sbjct: 679 KNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRI 738

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +F  LI   CK G  D A + F +M E+    + + Y  LI  +  ++N   AF++ +EM
Sbjct: 739 SFIALIHGLCKCGWPDAALLYFREMGER-ETPDTIVYVALITSFISNKNPTLAFEILKEM 797

Query: 124 CENNISPN 131
                 P+
Sbjct: 798 VAKGKFPD 805



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 17/173 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++EC+L     L  ++   G  P   T+N+I    C    +  A+ +  ++     +P  
Sbjct: 508 LEECYL-----LLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWI 562

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +T+L+   CK  R  +A    ++M+ +G   ++V YS  IDG+ K + +  A +++ +
Sbjct: 563 KHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRD 622

Query: 123 MCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +C     P++              R +EA  + D M+  G++P  +  + L D
Sbjct: 623 ICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLID 675



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D AL +F ++  RG   D    + ++  +     +D+A +L E++  + ++ N  TF +
Sbjct: 250 FDKALSVFNEIYGRGW-VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCV 308

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F ++ R+D A  +F KM + G   +V  Y  LI G    + ++ A  +  EM E  
Sbjct: 309 LIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELG 368

Query: 128 ISPNI 132
           I P+I
Sbjct: 369 IDPDI 373



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 13/160 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ D G EPD  T  +++  YC+  + D+A+ +F ++         +  +IL+  F K G
Sbjct: 224 EMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHV-LSILVLTFSKCG 282

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
            +D A  +  +M + G + N  T+  LI G+ +   +  A  ++++M ++  +P++    
Sbjct: 283 EVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYD 342

Query: 133 -------AGRPTE-AMQLYDSMLRNGIMPDGLLLSTLADY 164
                  A +  E A+ L   M   GI PD  +LS L  Y
Sbjct: 343 ALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAY 382



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + PD  +++ +I G C+  +LD A+ LF  +  V  K N + +  LID      R+++  
Sbjct: 453 VRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECY 512

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
           ++  +M   G +    T++ +     + +++  A D+  EM  +   P I          
Sbjct: 513 LLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQL 572

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               R  EA      M+R G +PD +  S   D
Sbjct: 573 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAID 605



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 91/202 (45%), Gaps = 31/202 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +++  +D AL+LF ++   G  PD+  Y+ +I G C+   +++A+ L  ++  + + P+
Sbjct: 313 FVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPD 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               + LI A+C E  +D   ++  ++ +   +A ++ Y+ +++G    +++  A+ +  
Sbjct: 373 IQILSKLI-AYCSE-EVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLR 430

Query: 122 EMCENNISPNI----------------------------AGRPTEAMQLYDSMLRNGIMP 153
            M  +N + N                              G+   A+ L+  M+R G   
Sbjct: 431 AMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQ 490

Query: 154 DGLLLSTLADYNLQSSGSQEHC 175
           + LL + L D  L +S   E C
Sbjct: 491 NVLLYNNLID-KLSNSNRLEEC 511



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++ D G+  +  T+  +I G+   +R+D+A+QLF+K+      P+   +  
Sbjct: 284 VDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDA 343

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           LI   C +  ++ A  + S+M E G   ++   S LI
Sbjct: 344 LIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 380



 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 43  LDEAVQLFEKLTCVQL-KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
           ++EA  LF+++  ++L  PNS +F  L++A  K G +D   M   +M + G + +  T +
Sbjct: 179 VEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLT 238

Query: 102 CLIDGYFKSQNMKSAFDVYEEM 123
            ++  Y  S+    A  V+ E+
Sbjct: 239 SVLQAYCNSRKFDKALSVFNEI 260


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTI 67
           + AL+L G ++  G EPDI+TYNT+I G+C  N L++A ++F+ +    +  P+ +T+T 
Sbjct: 223 EKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTS 282

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +CK G+M +A+ +   ML  G     VT++ L+DGY K+  M +A ++  +M    
Sbjct: 283 MISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFG 342

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G+ ++  +L++ M   G+ P+    S L +
Sbjct: 343 CFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILIN 390



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++ G++   G  PD++T+ ++I GYC + ++ +  +L+E++    + PN+ T++ILI+
Sbjct: 331 AEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILIN 390

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C E R+  A  +  ++  K        Y+ +IDG+ K+  +  A  + EEM +    P
Sbjct: 391 ALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKP 450

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +            + GR  EA+ ++  M+  G  PD + +S+L    L++  ++E
Sbjct: 451 DKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKE 505



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 4   KECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K   L+ A ++F  +    +  PD++TY ++I GYC   ++ EA  L + +  + + P +
Sbjct: 253 KSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTN 312

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TF +L+D + K G M  A  +  KM+  G   +VVT++ LIDGY +   +   F ++EE
Sbjct: 313 VTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEE 372

Query: 123 MCENNISPN 131
           M    + PN
Sbjct: 373 MNARGMFPN 381



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L  A +L GQL  + + P    YN +I G+C   +++EA  + E++   + KP+
Sbjct: 392 LCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPD 451

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF---D 118
            ITFTILI   C +GRM +A  +F KM+  G   + +T S L+    K+   K A+    
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQ 511

Query: 119 VYEEMCENNISP 130
           +  +   NN+ P
Sbjct: 512 IARKGQSNNVVP 523



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 15/176 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ A+KLF +        D  T+N +I G C + + ++A++L   ++    +P+
Sbjct: 181 LVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPD 240

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDV 119
            +T+  LI  FCK   ++ A+ MF K ++ G     +VVTY+ +I GY K+  M+ A  +
Sbjct: 241 IVTYNTLIQGFCKSNELNKASEMF-KDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSL 299

Query: 120 YEEMCENNISP-NI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++M    I P N+           AG    A ++   M+  G  PD +  ++L D
Sbjct: 300 LDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLID 355



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 13/149 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           +  N+++     L+R+++A++LF++    Q   ++ TF ILI   C  G+ + A  +   
Sbjct: 172 MVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGV 231

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNI------------AG 134
           M   G + ++VTY+ LI G+ KS  +  A ++++++   ++ SP++            AG
Sbjct: 232 MSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAG 291

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  EA  L D MLR GI P  +  + L D
Sbjct: 292 KMREASSLLDDMLRLGIYPTNVTFNVLVD 320



 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TYN +    C     D A Q+FE +    + PN+     L+ +F ++G++  AT +  + 
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-----CENNISPNI-------AGRP 136
            E      VV  + L++   K   ++ A  +++E      C +  + NI        G+ 
Sbjct: 165 FEVEGCCMVV--NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKA 222

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
            +A++L   M   G  PD +  +TL
Sbjct: 223 EKALELLGVMSGFGCEPDIVTYNTL 247


>gi|296081018|emb|CBI18522.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 77/131 (58%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE HLD AL L   +  +G+  +I  YN++I G C    L +A +LF+ L  + L P
Sbjct: 503 VLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVP 562

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + IT+  LID+ CKEG + DA  +F KM+ KG   NV  Y+ LIDGY K  NM+ A ++ 
Sbjct: 563 SEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLL 622

Query: 121 EEMCENNISPN 131
            ++    I P+
Sbjct: 623 IDLKARCIKPD 633



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 17/170 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  L  A++   ++ ++G+ PD ++Y  +I G+     +++A+   EK+    LKPN +
Sbjct: 170 REGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLV 229

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T ++  FCK+G++D+A  +F  +   G + +   Y  LIDG+    ++   F + E+M
Sbjct: 230 TYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDM 289

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  ISP+I            AGR +EA +     +  GI  D +  STL
Sbjct: 290 EKRGISPSIVTYNSIINGLCKAGRTSEADE-----VSKGIAGDAVTFSTL 334



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +LF  L    L P  ITY T+I   C    L +A QLFEK+      PN   +  
Sbjct: 545 LVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNS 604

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK G M++A  +   +  +  K +  T S LI+GY    +M+ A   + E  + +
Sbjct: 605 LIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKD 664

Query: 128 ISPNIAG 134
           I P+  G
Sbjct: 665 ILPDFLG 671



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D++ Y++ ICGY     L EA++  +++    + P+++++TILID F +EG ++ A    
Sbjct: 157 DVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFL 216

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            KM + G K N+VTY+ ++ G+ K   +  A+ ++ +M EN
Sbjct: 217 EKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLF-KMVEN 256



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  LF  + + G+E D   Y T+I G+C+   +D    L E +    + P+ +
Sbjct: 240 KKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIV 299

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I+  CK GR  +A       + KG   + VT+S L+ GY + +N+K   +    +
Sbjct: 300 TYNSIINGLCKAGRTSEA-----DEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRL 354

Query: 124 CENNI 128
            E+ +
Sbjct: 355 EEDGV 359



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C LDA  +LF ++  +G  P++  YN++I GYC    ++EA+ L   L    +KP+  T 
Sbjct: 579 CLLDAK-QLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTV 637

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           + LI+ +C +G M+ A   F +  +K    + + +  L+ G      M+ A  +  EM +
Sbjct: 638 SALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQ 697

Query: 126 NN 127
             
Sbjct: 698 TR 699



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +  R L P+I T   ++     L R+ E   L   +   +   + + ++  I  + +EG 
Sbjct: 114 VNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGV 173

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           + +A     +M+EKG   + V+Y+ LIDG+ +   ++ A    E+M ++ + PN+     
Sbjct: 174 LVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTA 233

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   G+  EA  L+  +   GI  D  +  TL D
Sbjct: 234 IMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLID 271



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 40/157 (25%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D    L   +  RG+ P I+TYN+II G C   R  EA ++ + +       +++TF+ 
Sbjct: 279 IDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIA-----GDAVTFST 333

Query: 68  LIDAFCKE-----------------------------------GRMDDATMMFSKMLEKG 92
           L+  + +E                                   G ++DA   +  M    
Sbjct: 334 LLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMD 393

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             A+ VTY  +I+GY +   ++ A ++++E  + +IS
Sbjct: 394 LVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSIS 430



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 38/194 (19%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--------- 58
           L+ A   +  ++   L  D +TY T+I GYC ++R++EA+++F++     +         
Sbjct: 379 LEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSISSCYLFFVQ 438

Query: 59  --------------KPNSITFTI---LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
                         +  +IT      ++ +  K GR+ DA  +     E  P  ++V YS
Sbjct: 439 EGFFPGCMRSIHENEKETITVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYS 498

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRN 149
            +ID   K  ++  A D+   + +  I+ NI             G   +A +L+DS+ + 
Sbjct: 499 IMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKI 558

Query: 150 GIMPDGLLLSTLAD 163
            ++P  +  +TL D
Sbjct: 559 DLVPSEITYATLID 572



 Score = 39.3 bits (90), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 49/86 (56%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+E ++   L+   +L + G+  D++  NTII     +  L++A   ++ ++ + L  +S
Sbjct: 339 IEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADS 398

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKM 88
           +T+  +I+ +C+  R+++A  +F + 
Sbjct: 399 VTYCTMINGYCRVSRIEEALEIFDEF 424



 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 19/149 (12%)

Query: 30  YNTIICGYC-SLNRLDEAVQLFEK-LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ++++I G C  L   ++A+ + +  LT + + P+S TF  LI +F  +G+M  A  +   
Sbjct: 16  WDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIHSFTSQGKMSRAIEVLEL 75

Query: 88  MLE---KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIA---------- 133
           M     + P  N V+ S +I G+ K    + A   +E    + +  PNIA          
Sbjct: 76  MTHDKVRYPFGNFVS-SSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALF 134

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLST 160
             GR  E   L   M R   + D +  S+
Sbjct: 135 QLGRVREVSDLVSWMEREEFVFDVVFYSS 163


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ ++  A K F ++++ GL PD   Y  II GYC +  +++A Q   ++    + P+
Sbjct: 366 LCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPS 425

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T+LI+A CK G M  A  +  +M+ +G   +VVT++CLIDG+ K   ++ AF++ +
Sbjct: 426 VTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLD 485

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M    +SP+              G P EA  +   ++R G+ PD +  + + D
Sbjct: 486 IMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVID 539



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 81/148 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI   + + A  +  +L  RGL PD++T+  +I G+      +EA  ++  ++   +KP+
Sbjct: 506 LIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPD 565

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + L++ +C+  RMD+A  +F KML+ G K ++V Y+ LI G+  + NM +A ++  
Sbjct: 566 VVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVA 625

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRN 149
            M ++   PNI      A+      ++N
Sbjct: 626 MMIDDGFLPNITTHRAFALGFEKKWVKN 653



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L  A +L   +   G+ PD +TYN +I    +    +EA  +  +L    L P+ +
Sbjct: 473 KKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVM 532

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT +ID F K+G  ++A +++S M E+  K +VVT S L++GY +++ M  A  ++ +M
Sbjct: 533 TFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKM 592

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  + P++            AG    A  L   M+ +G +P+
Sbjct: 593 LDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPN 635



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++   GL PD++T+N +I G+     L +A +L + +    + P+++T+  LI +  
Sbjct: 448 LLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLI 507

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
             G  ++A  +  +++ +G   +V+T++ +IDG+ K  N + AF V+  M E ++ P++ 
Sbjct: 508 ARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVV 567

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      A R  EA  L+  ML  G+ PD +L + L
Sbjct: 568 TCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNL 607



 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 54/114 (47%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  +  AL L  ++    + P +   N+++      ++LD A  + E +    +  N+
Sbjct: 195 VTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKALLRSHQLDLAWDILEGMQSFGMHLNA 254

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
              ++ I+++C EG +     +  +M   G KA+V+ Y+ +ID   K   +K A
Sbjct: 255 SILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVKVA 308



 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   LD A  +   +   G+  +    +  I  YC+   +    ++  ++    +K +
Sbjct: 229 LLRSHQLDLAWDILEGMQSFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKAD 288

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +TI+IDA CK   +  AT +  KM+  G   + V+ S +IDGY K      A ++  
Sbjct: 289 VIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLN 348

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
                N+ PNI             G   EA + +  M   G+ PD
Sbjct: 349 FF---NVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPD 390


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 10/168 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +L+ ++  +GL PD +TYNT+I G C L RL EA  LF+ +      P+  
Sbjct: 41  KATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLF 100

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++IL+D  CK+G +  A  +F  M     K ++V Y+ L+D   KS N+K A +++ E+
Sbjct: 101 AYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSEL 160

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY-NLQSSG 170
               + PN+        Q+Y +++ NG+  +GLL   L  + N++  G
Sbjct: 161 FVKGLQPNV--------QIYTTII-NGLCKEGLLDEALEAFRNMEEDG 199



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  +  +G +PD+  YN +I GYC   R+D+A QL+ ++    L P+ +T+  LI 
Sbjct: 13  ARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIH 72

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GR+ +A  +F  M + G   ++  YS L+DG  K   +  AF ++  M  +++ P
Sbjct: 73  GLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKP 132

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            +G   +A +L+  +   G+ P+  + +T+
Sbjct: 133 DLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTI 175



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 68/132 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +L  A +LF  +    L+PD++ YN ++   C    L +A +LF +L    L+PN
Sbjct: 109 LCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPN 168

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T +I+  CKEG +D+A   F  M E G   +  +Y+ +I G+ + ++   A  +  
Sbjct: 169 VQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIG 228

Query: 122 EMCENNISPNIA 133
           EM +     ++ 
Sbjct: 229 EMRDRGFIADVG 240



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 36  GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
           GY     + EA +LF+ +     KP+   + ILI+ +CK  R+D A  ++++M+ +G   
Sbjct: 3   GYSLCMEVVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTP 62

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           + VTY+ LI G  +   ++ A D+++ M +N   P++             G   +A +L+
Sbjct: 63  DKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLF 122

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
            +M  + + PD ++ + L D
Sbjct: 123 RAMQSSSLKPDLVMYNILVD 142



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A +LF +L  +GL+P++  Y TII G C    LDEA++ F  +      P+  
Sbjct: 146 KSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEF 205

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           ++ ++I  F +      A  +  +M ++G  A+V T
Sbjct: 206 SYNVIIRGFLQHKDESRAVHLIGEMRDRGFIADVGT 241


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE ++D+AL ++ ++ + G+ P+++TY ++I G+C  NR+D A++  +++    L+ +
Sbjct: 619 FIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELD 678

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++ LID FCK   M+ A  +F ++LE G   N + Y+ +I G+    NM++A   Y+
Sbjct: 679 VTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYK 738

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  + I  ++             GR   A  LY  ML  GI+PD +    L +
Sbjct: 739 KMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVN 792



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 15/178 (8%)

Query: 1   MLIKEC---HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  C   ++D A  +F  +  R L+P+++TY+ +I G       ++A+ LF+++  + 
Sbjct: 510 MILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN 569

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P   TF  +I+  CK G+M +A       LE+G   + +TY+ ++DG+ K  N+ SA 
Sbjct: 570 IAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSAL 629

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            VY EMCE  +SPN+            + R   A++  D M   G+  D    S L D
Sbjct: 630 AVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALID 687



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 13/173 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K    + A KLF +  D G+  +I TYN ++   C   ++DEA  L + +    + PN 
Sbjct: 446 LKAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNV 504

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  +I   C++G MD A+ +FS ML +  K NVVTYS LIDG FK  + + A D++++
Sbjct: 505 VSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQ 564

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M   NI+P               G+ +EA     + L  G +P  +  +++ D
Sbjct: 565 MLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVD 617



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +++A  LF +L + GL P+ I YN++I G+  LN ++ A+  ++K+   ++  +  
Sbjct: 691 KRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLG 750

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID   KEGR+  A+ ++ +ML KG   +++T+  L++G      +++A  + EEM
Sbjct: 751 TYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEM 810

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
              N++P++             G   EA  L+D ML  G++PD +    L +   +   S
Sbjct: 811 DRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRS 870



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A        + G  P  +TYN+I+ G+     +D A+ ++ ++    + PN
Sbjct: 584 LCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPN 643

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI+ FCK  R+D A     +M EKG + +V  YS LIDG+ K ++M+SA D++ 
Sbjct: 644 VVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFF 703

Query: 122 EMCENNISPN 131
           E+ E  +SPN
Sbjct: 704 ELLEVGLSPN 713



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 46/201 (22%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP------ 60
           +LD+AL LF ++T+ GL P+ +TY+ +I G C+   +++A +L+ ++    + P      
Sbjct: 380 NLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVN 439

Query: 61  ----------------------------NSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                                       N  T+ I++   CK G+MD+A  +   M+ +G
Sbjct: 440 SLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG 499

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              NVV+Y+ +I G+ +  NM  A  V+ +M   ++ PN+             G   +A+
Sbjct: 500 MVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKAL 559

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
            L+D ML   I P     +T+
Sbjct: 560 DLFDQMLSLNIAPTDFTFNTI 580



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 88/163 (53%), Gaps = 11/163 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + + ++  AL+L  ++ + G   +++   +++ GYC+   LD A+ LF K+T   L PN 
Sbjct: 341 VAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNK 400

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+++LI+  C  G ++ A+ ++++M   G   +V   + L+ GY K+   + A  +++E
Sbjct: 401 VTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDE 460

Query: 123 MCE----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
             +    N  + NI        G+  EA  L D+M+  G++P+
Sbjct: 461 AVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPN 503



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 65/108 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  L  A  L+ ++  +G+ PDIIT++ ++ G C+  +L+ A ++ E++    + P+
Sbjct: 759 LLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPS 818

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            + +  LI  + +EG + +A  +  +ML++G   + VTY  LI+G FK
Sbjct: 819 VLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFK 866



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 71/129 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ + +  L+L  ++ +RG  P   T+ ++I    +   + EA++L E++       N +
Sbjct: 307 KKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLV 366

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             T L+  +C +G +D A  +F+K+ E G   N VTYS LI+G   S N++ A ++Y +M
Sbjct: 367 VATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQM 426

Query: 124 CENNISPNI 132
             N I P++
Sbjct: 427 KLNGIPPSV 435



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE  ++ A + F +  +RG++ D   Y+ II   C     +  ++L E++      P+ 
Sbjct: 271 LKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSE 330

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            TFT +I A   +G M +A  +  +M+  G   N+V  + L+ GY    N+ SA +++ +
Sbjct: 331 ATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNK 390

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + E+ + PN             +G   +A +LY  M  NGI P    +++L
Sbjct: 391 ITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSL 441



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+   ++ A+  F  +  + + P +   N ++      N + E   L+ K+    +  + 
Sbjct: 201 IRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDH 260

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  +++ A  KEGR+++A   F +  E+G K +   YS +I    K  N     ++ EE
Sbjct: 261 FTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEE 320

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
           M E    P+ A            G   EA++L + M+  G  P  L+++T
Sbjct: 321 MKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCG-KPMNLVVAT 369


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K   L+AALK+   + + GL P+I+T N +I   C   +LDEA  +F  L      P
Sbjct: 421 MLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSP 480

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +S TF  LID   + GR+DDA  ++ KML+     NVV Y+ LI  +FK    +    +Y
Sbjct: 481 DSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIY 540

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           +EM     SP++            AG   +   L++ +   G++PD    S L    +++
Sbjct: 541 KEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKA 600

Query: 169 SGSQE 173
             S+E
Sbjct: 601 GFSRE 605



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 76/130 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K        KLF ++ ++GL  D++ YNT+I G+C   ++D+A QL E++    L+P 
Sbjct: 597 LVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPT 656

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++D   K  R+D+A M+F +    G   NVV YS LIDG+ K   +  A+ + E
Sbjct: 657 VVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILE 716

Query: 122 EMCENNISPN 131
           E+ +  ++PN
Sbjct: 717 ELMQKGLTPN 726



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +L  ++  +GL+P ++TY +++ G   ++RLDEA  LFE+   + +  N +
Sbjct: 634 KSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVV 693

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K GR+D+A ++  ++++KG   N  T++CL+D   K++ +  A   ++ M
Sbjct: 694 IYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNM 753

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                SPN       I G     +  +A   +  M + G+ P+ +  +T+
Sbjct: 754 KNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTM 803



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K F ++  +GL PD +TY T+I   C   RLDEAV+LFE+L   +  P    +  
Sbjct: 289 VDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNT 348

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +   G+ D+A  +  +   KG   +V+ Y+C++    +   ++ A  +++EM   +
Sbjct: 349 MIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM-RQD 407

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            AG    A+++ D+M   G+ P+ + ++ + D   ++    E C
Sbjct: 408 AAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEAC 467



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K   ++    LF ++  +GL PD+ +Y+ +I G        E  +LF ++    L  +
Sbjct: 562 VFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLD 621

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +ID FCK G++D A  +  +M  KG +  VVTY  ++DG  K   +  A+ ++E
Sbjct: 622 VLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFE 681

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E     +  N+             GR  EA  + + +++ G+ P+    + L D
Sbjct: 682 EAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLD 735



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  ++ AL++  ++      P++ TYN +I   C    L+ A+++ + +    L PN
Sbjct: 388 LGRKGKVEEALRIHDEMRQDA-APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPN 446

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T  I+ID  CK  ++D+A  +F  +  K    +  T+  LIDG  +   +  A+ +YE
Sbjct: 447 IMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYE 506

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +++  PN+             GR  +  ++Y  M+  G  PD +LL++  D
Sbjct: 507 KMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMD 560



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +  +E  +DAAL L  ++       D++ YN  I  +  + ++D A + F ++    L P
Sbjct: 247 VFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVP 306

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T LI   CK  R+D+A  +F ++        V  Y+ +I GY  +     A+ + 
Sbjct: 307 DDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLL 366

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           E        P++             G+  EA++++D M ++ 
Sbjct: 367 ERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA 408



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++ ++  RG  PD++  N+ +        +++   LFE++    L P+  +++ILI   
Sbjct: 538 KIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGL 597

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G   +   +F +M E+G   +V+ Y+ +IDG+ KS  +  A+ + EEM    + P +
Sbjct: 598 VKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTV 657

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         R  EA  L++     G+  + ++ S+L D
Sbjct: 658 VTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLID 700



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L LF Q+ + G E ++  + T++  +    R+D A+ L +++       + + + + 
Sbjct: 220 DPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVC 279

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K G++D A   F +M  +G   + VTY+ LI    K++ +  A +++EE+  N  
Sbjct: 280 IDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRS 339

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            P +            AG+  EA  L +   R G +P
Sbjct: 340 VPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIP 376



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 62/121 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D A   F  + +    P+ +TY+ +I G C + + ++A   ++++    LKPN
Sbjct: 737 LVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPN 796

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T +I    K G + +A  +F +    G   +   Y+ +I+G   +     A+ V+E
Sbjct: 797 NITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFE 856

Query: 122 E 122
           E
Sbjct: 857 E 857



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   L  A  +   +      P    Y T+I    + NR D  + LF ++  +  + N
Sbjct: 178 FVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEAN 237

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              FT L+  F +EGR+D A  +  +M      A++V Y+  ID + K   +  A+  + 
Sbjct: 238 VHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFH 297

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           EM    + P+             A R  EA++L++ +  N  +P
Sbjct: 298 EMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVP 341



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 12/141 (8%)

Query: 33  IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++  +   ++L EA  + E +   + +P    +T LI A     R D    +F +M E G
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG 233

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
            +ANV  ++ L+  + +   + +A  + +EM  N+ + ++             G+   A 
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAW 293

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           + +  M   G++PD +  +TL
Sbjct: 294 KFFHEMKAQGLVPDDVTYTTL 314



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 52/109 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A   + ++  +GL+P+ ITY T+I G      + EA  LF++       P+S  +  
Sbjct: 778 FNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNA 837

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           +I+      +  DA ++F +   KG + N  T   L+D   K+  ++ A
Sbjct: 838 MIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQA 886



 Score = 36.2 bits (82), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++  A  LF +    G  PD   YN +I G  S N+  +A  +FE+      + N
Sbjct: 807 LAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVN 866

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLE 90
           S T  +L+DA  K   ++ A ++ + + E
Sbjct: 867 SKTCVVLLDALHKADCLEQAAIVGAVLRE 895


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 13/176 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++F  +T+RG  P+ ++ N +I G C   RL +A ++FE++   Q KP+ +T++ 
Sbjct: 292 VDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYST 351

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE-EMCEN 126
            +D  C+  R+D A  +   +++KG   +VV Y+ LI G      +  A  V+E +M   
Sbjct: 352 FMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAA 411

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
             +PN            +AGR  EA +L+   +  G+ PD    S +A+   ++ G
Sbjct: 412 GCAPNNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQPDCRTFSAMANNTAKTEG 467



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A++LFG++   G  P   TYNT+I G C + RL EA Q +E+L       + IT+ 
Sbjct: 116 RIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYN 175

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL+D FCK  R+ +A  + ++++ +G       Y+C+ID  FK   +  A   +  M ++
Sbjct: 176 ILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKD 235

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            + P              A R   A +++ S L +G  P  ++ S L D   +  G  E
Sbjct: 236 GVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDE 294



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   +D A   F +L D RGL  + ++YN +I  +C   R+DEA+QLF ++      P
Sbjct: 76  LCKSDMIDKAESWFQELKDFRGL-VNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAP 134

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++ T+  LI   C+  R+ +A   + ++L  G  A+ +TY+ L+DG+ K+  +  A ++ 
Sbjct: 135 STSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELL 194

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E+         A            G+  EA   ++ M ++G+ P  +  + L D
Sbjct: 195 NELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLID 249



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 47/204 (23%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------------ 54
            L  A + + +L   G     ITYN ++ G+C  +R+ EAV+L  +L             
Sbjct: 151 RLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYN 210

Query: 55  CV-----------------------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
           C+                        ++P  +TFT+LID  CK  R+  A  +F   LE 
Sbjct: 211 CIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLES 270

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEA 139
           G   +VV  SCL+DG+ K   +  A+ ++E M     +PN             A R ++A
Sbjct: 271 GGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQA 330

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
            ++++ +++    PD +  ST  D
Sbjct: 331 REVFEEVVKRQAKPDVVTYSTFMD 354



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A   F ++   G+ P  +T+  +I G C  NR+  A ++F         P+
Sbjct: 216 LFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPS 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +  + L+D FCK G +D+A  +F  M  +G   N V+ + LI+G  K++ +  A +V+E
Sbjct: 276 VVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFE 335

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E+ +    P++            A R  +A Q+   ++  G  PD ++ + L
Sbjct: 336 EVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTAL 387



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++F    + G  P ++  + ++ G+C    +DEA ++FE +T     PN
Sbjct: 251 LCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPN 310

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++  ILI+  CK  R+  A  +F +++++  K +VVTYS  +DG  ++  +  A  V  
Sbjct: 311 DVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLC 370

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLR-NGIMPDGLLLSTLAD 163
            + +   +P++             GR  EA ++++  +R  G  P+    + L +
Sbjct: 371 MLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVN 425



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    +  LK+   + DR    +    N  I   C  + +D+A   F++L   +   N
Sbjct: 41  LSKAGRAEECLKVVKLMLDRQQLRERHLVNITIDSLCKSDMIDKAESWFQELKDFRGLVN 100

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++ ILI+AFCK  R+D+A  +F +M   G   +  TY+ LI G  + + +  A   YE
Sbjct: 101 TVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYE 160

Query: 122 EMCENN-----ISPNI-------AGRPTEAMQLYDSMLRNG 150
            +  +      I+ NI       A R  EA++L + ++  G
Sbjct: 161 RLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARG 201



 Score = 43.1 bits (100), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 46/176 (26%)

Query: 33  IICGYCSLNRLDEAVQLFEKLT-----------------------CV----------QLK 59
           I+   C + +LDEA++LF  L                        C+          QL+
Sbjct: 5   IVLCLCHVGKLDEALELFHSLVSDGCGLPADLLVRELSKAGRAEECLKVVKLMLDRQQLR 64

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
              +   I ID+ CK   +D A   F ++ +     N V+Y+ LI+ + K++ +  A  +
Sbjct: 65  ERHLV-NITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQL 123

Query: 120 YEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + EM     +P+       I G     R  EA Q Y+ +L +G     +  + L D
Sbjct: 124 FGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVD 179


>gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Vitis vinifera]
          Length = 993

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 77/131 (58%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L KE HLD AL L   +  +G+  +I  YN++I G C    L +A +LF+ L  + L P
Sbjct: 648 VLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVP 707

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + IT+  LID+ CKEG + DA  +F KM+ KG   NV  Y+ LIDGY K  NM+ A ++ 
Sbjct: 708 SEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLL 767

Query: 121 EEMCENNISPN 131
            ++    I P+
Sbjct: 768 IDLKARCIKPD 778



 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 17/170 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  L  A++   ++ ++G+ PD ++Y  +I G+     +++A+   EK+    LKPN +
Sbjct: 170 REGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLV 229

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T ++  FCK+G++D+A  +F  +   G + +   Y  LIDG+    ++   F + E+M
Sbjct: 230 TYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDM 289

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  ISP+I            AGR +EA +     +  GI  D +  STL
Sbjct: 290 EKRGISPSIVTYNSIINGLCKAGRTSEADE-----VSKGIAGDAVTFSTL 334



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +LF  L    L P  ITY T+I   C    L +A QLFEK+      PN   +  
Sbjct: 690 LVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNS 749

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK G M++A  +   +  +  K +  T S LI+GY    +M+ A   + E  + +
Sbjct: 750 LIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKD 809

Query: 128 ISPNIAG 134
           I P+  G
Sbjct: 810 ILPDFLG 816



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D++ Y++ ICGY     L EA++  +++    + P+++++TILID F +EG ++ A    
Sbjct: 157 DVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFL 216

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            KM + G K N+VTY+ ++ G+ K   +  A+ ++ +M EN
Sbjct: 217 EKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLF-KMVEN 256



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  LF  + + G+E D   Y T+I G+C+   +D    L E +    + P+ +
Sbjct: 240 KKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIV 299

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I+  CK GR  +A       + KG   + VT+S L+ GY + +N+K   +    +
Sbjct: 300 TYNSIINGLCKAGRTSEA-----DEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRL 354

Query: 124 CENNI 128
            E+ +
Sbjct: 355 EEDGV 359



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C LDA  +LF ++  +G  P++  YN++I GYC    ++EA+ L   L    +KP+  T 
Sbjct: 724 CLLDAK-QLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTV 782

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           + LI+ +C +G M+ A   F +  +K    + + +  L+ G      M+ A  +  EM +
Sbjct: 783 SALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQ 842

Query: 126 NN 127
             
Sbjct: 843 TR 844



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +  R L P+I T   ++     L R+ E   L   +   +   + + ++  I  + +EG 
Sbjct: 114 VNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGV 173

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           + +A     +M+EKG   + V+Y+ LIDG+ +   ++ A    E+M ++ + PN+     
Sbjct: 174 LVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTA 233

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   G+  EA  L+  +   GI  D  +  TL D
Sbjct: 234 IMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLID 271



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A   +  ++   L  D +TY T+I GYC ++R++EA+++F++     +   S  +  
Sbjct: 379 LEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSISSVS-CYKC 437

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           +I   C++G +D A  +F ++ EKG +    TY+ LI   F+ Q 
Sbjct: 438 MIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQG 482



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 40/157 (25%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D    L   +  RG+ P I+TYN+II G C   R  EA ++ + +       +++TF+ 
Sbjct: 279 IDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIA-----GDAVTFST 333

Query: 68  LIDAFCKE-----------------------------------GRMDDATMMFSKMLEKG 92
           L+  + +E                                   G ++DA   +  M    
Sbjct: 334 LLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMD 393

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             A+ VTY  +I+GY +   ++ A ++++E  + +IS
Sbjct: 394 LVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSIS 430



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 68/126 (53%), Gaps = 1/126 (0%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+E ++   L+   +L + G+  D++  NTII     +  L++A   ++ ++ + L  +S
Sbjct: 339 IEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADS 398

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +I+ +C+  R+++A  +F +   K   ++V  Y C+I G  +   +  A +V+ E
Sbjct: 399 VTYCTMINGYCRVSRIEEALEIFDE-FRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIE 457

Query: 123 MCENNI 128
           + E  +
Sbjct: 458 LNEKGL 463



 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 13/124 (10%)

Query: 53  LTCVQLKPNSITFTI-LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111
           LT +Q+  +++ F + ++ +  K GR+ DA  +     E  P  ++V YS +ID   K  
Sbjct: 594 LTNIQVNTSAVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEG 653

Query: 112 NMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
           ++  A D+   + +  I+ NI             G   +A +L+DS+ +  ++P  +  +
Sbjct: 654 HLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYA 713

Query: 160 TLAD 163
           TL D
Sbjct: 714 TLID 717



 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 19/149 (12%)

Query: 30  YNTIICGYC-SLNRLDEAVQLFEK-LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ++++I G C  L   ++A+ + +  LT + + P+S TF  LI +F  +G+M  A  +   
Sbjct: 16  WDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIHSFTSQGKMSRAIEVLEL 75

Query: 88  MLE---KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIA---------- 133
           M     + P  N V+ S +I G+ K    + A   +E    + +  PNIA          
Sbjct: 76  MTHDKVRYPFGNFVS-SSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALF 134

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLST 160
             GR  E   L   M R   + D +  S+
Sbjct: 135 QLGRVREVSDLVSWMEREEFVFDVVFYSS 163


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 76/132 (57%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L  +  +  AL++   +T  G+  D + + T+I G+CS   L  A +LFE++    L  
Sbjct: 331 LLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAA 390

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T T LI+  C+ G + +A  +  +M++KG   +VVTY+ LIDGY K  NM  AF V+
Sbjct: 391 DRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVH 450

Query: 121 EEMCENNISPNI 132
            EM    ++PN+
Sbjct: 451 NEMVGRRVAPNV 462



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 77/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  + AA +L  ++ ++GLE ++ TYN++I G C    L++A+++  ++     + +
Sbjct: 472 LCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTD 531

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID  CK G  D A  M  +ML+KG K ++ TY+ L++G+  S  ++    + E
Sbjct: 532 VYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLE 591

Query: 122 EMCENNISPNI 132
            M E N+ PN+
Sbjct: 592 WMLEKNVRPNV 602



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AA +LF ++  RGL  D +T+  +I G C    L EA ++ +++    L  + +T+T+
Sbjct: 373 LAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTV 432

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK G M +A  + ++M+ +    NVVTY+ L DG  K  ++++A ++  EMC   
Sbjct: 433 LIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKG 492

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  N+             G   +AM++   M   G   D    +TL D
Sbjct: 493 LELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLID 540



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A ++  ++ D+GL+ D++TY  +I GYC    + EA ++  ++   ++ PN
Sbjct: 402 LCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPN 461

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L D  CK+G +  A  +  +M  KG + NV TY+ LI+G  K  N++ A  +  
Sbjct: 462 VVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMT 521

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM       ++            +G    A  +   ML  GI P      ++A YN+  +
Sbjct: 522 EMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKP------SIATYNVLMN 575

Query: 170 G 170
           G
Sbjct: 576 G 576



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A+++  ++   G   D+ TY T+I   C     D A  + +++    +KP+
Sbjct: 507 LCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPS 566

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +L++ FC  GR++    +   MLEK  + NVVTY+ L+  Y   +NMKS  ++Y+
Sbjct: 567 IATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYK 626

Query: 122 EMCENNISPN 131
            M    ++PN
Sbjct: 627 GMHSQEVAPN 636



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+KL  ++  +GLE +   Y ++I   C+  ++ +A+++ E +T   +  +++ FT 
Sbjct: 303 LENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTT 362

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC +G +  A  +F +M ++G  A+ VT++ LI+G  ++  +K A  V +EM +  
Sbjct: 363 VISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKG 422

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  ++             G   EA ++++ M+   + P+ +  + L+D
Sbjct: 423 LDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSD 470



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 68/127 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  +  ++ D+G++P I TYN ++ G+C   R++   +L E +    ++PN
Sbjct: 542 LCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPN 601

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+  +C +  M   T ++  M  +    N  TY+ LI G+ K++NMK A   ++
Sbjct: 602 VVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQ 661

Query: 122 EMCENNI 128
           EM E  +
Sbjct: 662 EMIEKGL 668



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 59/116 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   KL   + ++ + P+++TYN+++  YC    +    ++++ +   ++ PN  T+ I
Sbjct: 583 VEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNI 642

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           LI   CK   M +A     +M+EKG +    +YS LI    K +    A   +++M
Sbjct: 643 LIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKM 698



 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 23/161 (14%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +L  +L   GL P   + N ++    S   LDEA+ LF +L       N  +  IL+ A 
Sbjct: 214 ELLRRLRQYGLSPSPESCNAVL----SRLPLDEAIALFRELP----DKNVCSHNILLKAL 265

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
              GR+ DA   F +M       +VVTY  ++ GY     +++A  + +EM    +  N 
Sbjct: 266 LSAGRLKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNA 322

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        G+ ++A+++ + M  +G+  D ++ +T+
Sbjct: 323 TVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTV 363



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 63/127 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + +  +++  +  + + P+  TYN +I G+C    + EA+   +++    L+  + +++ 
Sbjct: 618 MKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSA 677

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K+ +  +A + F KM  +G  A    YS  +D  F   N++S   + +E+ E +
Sbjct: 678 LIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELVEAS 737

Query: 128 ISPNIAG 134
              + AG
Sbjct: 738 HVKSKAG 744


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D ALK+F Q++  G+ P +IT+NT+I        +D A Q+F +L+   L PN  TF+ L
Sbjct: 181 DQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSAL 240

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I +   +G++D+A     +M  +G + N VTYS LI+   ++  +  AF   +EM    I
Sbjct: 241 IHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGI 300

Query: 129 SPNIA-----------GRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            PN+            G+  E + +L+  M   G +P+G+  S L D  L++
Sbjct: 301 EPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKA 352



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F ++ + G+ PD+   N++I  +      D+A+++F++++   + P+ ITF  LID
Sbjct: 148 AERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLID 207

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  + G +D A  +FS++ + G   N  T+S LI  +     +  AF   +EM    + P
Sbjct: 208 ACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEP 267

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N             AG+   A Q  D M   GI P+ +  +TL D
Sbjct: 268 NRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLID 312



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 71/124 (57%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++F +L+  GL P+  T++ +I  +    ++DEA    +++    L+PN +T++ 
Sbjct: 215 IDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSA 274

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+A  + G++  A     +M   G + NVVT++ LID   K + ++ +F +++EM E  
Sbjct: 275 LINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERG 334

Query: 128 ISPN 131
             PN
Sbjct: 335 TVPN 338



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 65/124 (52%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A     ++  RGLEP+ +TY+ +I       +L  A Q  +++    ++PN +T+T
Sbjct: 249 QVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWT 308

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LIDA  K   ++ +  +F +M E+G   N VT S L+D   K+  +  AF V E M + 
Sbjct: 309 TLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDV 368

Query: 127 NISP 130
            I P
Sbjct: 369 GIEP 372



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 42  RLDEAVQLFEKLTCVQLKPNSITFTILID--AFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           R+D+ V  +E +   QL+P  +TF+ LI     C+  R+  A   F +MLE G   +V  
Sbjct: 109 RIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRL--AERFFREMLEAGITPDVQA 166

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSML 147
            + LI+ + K+ +   A  V+++M    ++P++            AG    A Q++  + 
Sbjct: 167 INSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLS 226

Query: 148 RNGIMPDGLLLSTL 161
           + G+ P+    S L
Sbjct: 227 QAGLSPNDRTFSAL 240



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + + A    GR+DD    +  ML    +  +VT+S LI      + ++ A   + EM E 
Sbjct: 99  VFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEA 158

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I+P++            AG P +A++++D M R G+ P  +  +TL D
Sbjct: 159 GITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLID 207



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 28/176 (15%)

Query: 14   LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT----CVQLKPNSITFTILI 69
            +F ++  RG+ PD+  YN ++     L   D A+ +   +        L+P+++T+T LI
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 70   DAFCKE--GRMDDATMMFSKMLEKG------PKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             A  +    R+++A  +F+ M ++        +   VTY+ L+     +++   A +++ 
Sbjct: 941  KAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWR 1000

Query: 122  EMCENNISPNIAGRPTE--------------AMQLYDSMLRNGIMPDGLLLSTLAD 163
            +     ++P    R T               A+Q+YD M   GI P+   L  L +
Sbjct: 1001 QQLSAGVAP--GPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVN 1054



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LI  C     L  A +   ++   G+EP+++T+ T+I        L+ + +LF+++    
Sbjct: 275 LINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERG 334

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
             PN +T + L+DA  K   +D A  +   ML+ G +   VTY+ L+
Sbjct: 335 TVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLL 381



 Score = 46.2 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSIT 64
            +DAA K+   + +R   PD  T+  ++    +   LD+AV+L E+        + N +T
Sbjct: 557 QVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELT 616

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ L+ A  +  ++  A  +   M E G K    TY  L++    S++ K+A +V+E M 
Sbjct: 617 YSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEAME 676

Query: 125 ENNISPNI 132
              + P +
Sbjct: 677 TEGVRPGV 684



 Score = 43.1 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 4/96 (4%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LI  C     L+ + KLF ++ +RG  P+ +T + ++      + LD A  + E +  V 
Sbjct: 310 LIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVG 369

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
           ++P  +T+T L+    + G+ D A ++  ++ ++ P
Sbjct: 370 IEPTEVTYTSLLTQCARLGQADRAGIVLDELNKRRP 405


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A +L   LT +G+ PD+ T+N++I G C       A++LFE++     +P+
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LID+ C +G++D+A  M  +M   G   +V+TY+ LIDG+ K+   + A ++++
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFD 494

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  + +S N       I G     R  +A QL D M+  G  PD    ++L
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD AL +  Q+   G    +ITYNT+I G+C  N+  EA ++F+++    +  NS+T+  
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK  R++DA  +  +M+ +G K +  TY+ L+  + +  ++K A D+ + M  N 
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGI 151
             P+I            AGR   A +L  S+   GI
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 74/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+  A+++   +   G +PD+ TYN++I G C L  + EAV++ +++      PN
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPN 364

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  LI   CKE ++++AT +   +  KG   +V T++ LI G   ++N + A +++E
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424

Query: 122 EMCENNISPN 131
           EM      P+
Sbjct: 425 EMRSKGCEPD 434



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +L  Q+   G +PD  TYN+++  +C    + +A  + + +T    +P+
Sbjct: 515 LCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK GR++ A+ +   +  KG       Y+ +I G F+ +    A +++ 
Sbjct: 575 IVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFR 634

Query: 122 EMCENNISP--------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E N +P              N  G   EA+     +L  G +P+   L  LA+
Sbjct: 635 EMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAE 690



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 13/152 (8%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
            +++  G++PD+ T+N +I   C  ++L  A+ + E +    L P+  TFT ++  + +E
Sbjct: 178 AKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEE 237

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-ENNISPN--- 131
           G +D A  +  +M+E G   + V+ + ++ G+ K   ++ A +  +EM  ++   P+   
Sbjct: 238 GDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297

Query: 132 ---------IAGRPTEAMQLYDSMLRNGIMPD 154
                     AG    A+++ D ML+ G  PD
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A+ +   +   GL PD  T+ T++ GY     LD A+++ E++       +
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWS 258

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +++  +++  FCKEGR++DA     +M  + G   +  T++ L++G  K+ ++K A ++ 
Sbjct: 259 NVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIM 318

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M +    P++             G   EA+++ D M+     P+ +  +TL
Sbjct: 319 DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           KE  ++ AL    +++++ G  PD  T+NT++ G C    +  A+++ + +      P+ 
Sbjct: 271 KEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDV 330

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  +I   CK G + +A  +  +M+ +    N VTY+ LI    K   ++ A ++   
Sbjct: 331 YTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARV 390

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +    I P++                  AM+L++ M   G  PD    + L D
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID 443



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 15/182 (8%)

Query: 9   DAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D  L +   + D  GL+PD   YN ++      N L        K++   +KP+  TF +
Sbjct: 135 DEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNV 194

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           LI A C+  ++  A +M   M   G   +  T++ ++ GY +  ++  A  + E+M E  
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254

Query: 126 ---NNISPNI-------AGRPTEAMQLYDSML-RNGIMPDGLLLSTLADYNLQSSGSQEH 174
              +N+S N+        GR  +A+     M  ++G  PD    +TL +  L  +G  +H
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN-GLCKAGHVKH 313

Query: 175 CI 176
            I
Sbjct: 314 AI 315


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +  Q+ D+G+EPD +TYN II GY       E+ ++F K+T   L P+
Sbjct: 277 LCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPD 336

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TF+  + + CK GR  DA  +F  M  KG   ++V+YS L+ GY          +++ 
Sbjct: 337 TVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFH 396

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  I  N              G   EAM ++  M   G+ P+ +  STL
Sbjct: 397 SMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTL 448



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 40/191 (20%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+ +F ++  +G+ P+++TY+T+I  +C + RL +A++ F ++  + ++PN+ 
Sbjct: 419 KRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTA 478

Query: 64  TFTILIDAFCK------------------------------------EGRMDDATMMFSK 87
            +  LI  FC                                     EGR+ DA  +F+ 
Sbjct: 479 VYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNL 538

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSML 147
           ++  G +  +VT++ LIDGY     M+ AF V + M    I P++    T    L     
Sbjct: 539 VIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNT----LVSGYC 594

Query: 148 RNGIMPDGLLL 158
           ++G + DGL+L
Sbjct: 595 KSGKIDDGLIL 605



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 72/122 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +   G  P I+T+N++I GYC + ++++A  + + +  V ++P+ +T   L+ 
Sbjct: 532 AQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVS 591

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK G++DD  ++F +ML K  K   VTY+ ++DG  ++    +A  ++ EM ++  + 
Sbjct: 592 GYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAV 651

Query: 131 NI 132
           +I
Sbjct: 652 DI 653



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 47/207 (22%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +   +   G+EPD++T NT++ GYC   ++D+ + LF ++   ++KP ++T+ I
Sbjct: 564 MEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNI 623

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG--------------------- 106
           ++D   + GR   A  MF +M++ G   ++ TY  L+ G                     
Sbjct: 624 VLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 683

Query: 107 --------------YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
                          +K +  + A D++  +  + + PN++            G   EA 
Sbjct: 684 CKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEAD 743

Query: 141 QLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            ++ SM ++G  P   LL+ +    LQ
Sbjct: 744 TMFSSMEKSGCAPSSRLLNDIIRMLLQ 770



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 12/150 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            PD++++NT+I G+     + +A  LF ++    + P+  T+  ++DA CK   MD A  
Sbjct: 229 SPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEF 288

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
           +  +M++KG + + VTY+ +I GY  S + K +  ++ +M    + P+            
Sbjct: 289 VLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLC 348

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             GR  +A +++  M   G MPD +  S L
Sbjct: 349 KHGRSKDAEEIFQYMTTKGHMPDIVSYSIL 378



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 66/123 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +T +G  PDI++Y+ ++ GY +  R  +   LF  +    +  N     ILI 
Sbjct: 356 AEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILIS 415

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K G MD+A ++F++M  +G + NVVTYS LI  + +   +  A + + +M    I P
Sbjct: 416 AHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEP 475

Query: 131 NIA 133
           N A
Sbjct: 476 NTA 478



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 83/162 (51%), Gaps = 14/162 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFTILIDA 71
           L  ++++    PD I+YNT+I   C  +R  EA+ + +++     +  P+ ++F  +I  
Sbjct: 182 LLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG 241

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           F K+G +  A  +F++M++KG   +V TY+ ++D   K++ M  A  V  +M +  + P+
Sbjct: 242 FFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPD 301

Query: 132 ------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                        +G   E+ +++  M   G++PD +  S+ 
Sbjct: 302 GVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSF 343



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF  + D+G+  +    N +I  +     +DEA+ +F ++    ++PN +T++ LI AFC
Sbjct: 394 LFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFC 453

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNI 132
           + GR+ DA   FS+M+  G + N   Y  LI G+    ++  A +   EM    +  PNI
Sbjct: 454 RMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNI 513

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                        GR  +A  +++ ++  G  P  +  ++L D
Sbjct: 514 VFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLID 556



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           L  A +   ++  +GL  P+I+ +++II   C   R+ +A  +F  +  +  +P  +TF 
Sbjct: 493 LVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFN 552

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +C  G+M+ A  +   M+  G + +VVT + L+ GY KS  +     ++ EM   
Sbjct: 553 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHK 612

Query: 127 NISP-----NI-------AGRPTEAMQLYDSMLRNGIMPD 154
            + P     NI       AGR + A +++  M+ +G   D
Sbjct: 613 KVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVD 652



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++     AA K+F ++ D G   DI TY  ++ G C  +  DEA+ LF KL  +  K +
Sbjct: 628 LLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFD 687

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                 +I+A  K  R ++A  +F+ +   G   NV TY  +I    K  +++ A  ++ 
Sbjct: 688 ITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFS 747

Query: 122 EMCENNISPN 131
            M ++  +P+
Sbjct: 748 SMEKSGCAPS 757



 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 21/166 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSIT 64
           D       +L   GL+   I   T +   C   R DEAV +      +L+CV   P++I+
Sbjct: 141 DLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCV---PDAIS 197

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +  +I + C + R  +A  M  +M ++G +   +VV+++ +I G+FK   +  A +++ E
Sbjct: 198 YNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNE 257

Query: 123 MCENNISPNIAGR--------PTEAMQLYDSMLR----NGIMPDGL 156
           M +  + P++              AM   + +LR     G+ PDG+
Sbjct: 258 MVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGV 303


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 18/172 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A +++ ++ ++G++PD++ +NT+I G     R  EAV++FE +      PN  T+T
Sbjct: 346 NLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 405

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   CK+G+MD A   F +M E   + +V TY+CL+ GY  ++ M     V EEM + 
Sbjct: 406 MLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQK 465

Query: 127 NISPN----------IAGR--PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              P+          +  R  P +A ++Y  M++ G+ P      T+  YN+
Sbjct: 466 GCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEP------TIHTYNM 511



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A++ F ++ +   +PD+ TY  ++ GY +  ++D    + E++T     P++ 
Sbjct: 413 KQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDAR 472

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEE 122
           T+  LI         DDA  ++ KM++KG +  + TY+ ++  YF    N      V+EE
Sbjct: 473 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGCAVWEE 532

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           M +  I P++             GRP EA +  + M+  G+
Sbjct: 533 MHQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGM 573



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 5/121 (4%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+ GQ +     PD+ +Y  ++  +C+   L EA +++ ++    + P+ +    +I+  
Sbjct: 322 KMHGQYS-----PDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGL 376

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            +  R  +A  MF  M  KGP  NV TY+ LI  + K   M  A + +EEM E    P++
Sbjct: 377 LRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDV 436

Query: 133 A 133
           A
Sbjct: 437 A 437



 Score = 44.7 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGY-CSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D A +++ ++  +GLEP I TYN ++  Y    +       ++E++    + P+  ++T+
Sbjct: 488 DDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTV 547

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            I+   + GR ++A     +M+ KG KA  + Y+     + K+      F++ +++
Sbjct: 548 FINGHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKV 603



 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +   I  + +   +  AV +FE +          +F  L+ A  KEG   +A  +F KM 
Sbjct: 265 FKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKM- 323

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
                 ++ +Y+ L+  +  ++N+  A  V+ EM E  + P++              R  
Sbjct: 324 HGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRP 383

Query: 138 EAMQLYDSMLRNGIMPD 154
           EA+++++ M   G  P+
Sbjct: 384 EAVKMFELMKAKGPPPN 400


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 90/161 (55%), Gaps = 14/161 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L  ++ + G+EP+++ Y+ ++ GYC   R +   ++FE+++   ++P+ + +T 
Sbjct: 145 VDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTA 204

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+ C+ G++  A  +   M E+G + NVVTY+ LI+   K  +++ A D+ + M E  
Sbjct: 205 LIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKG 264

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRN--GIMPD 154
           + P++    T            EAM L + M++    + PD
Sbjct: 265 VQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPD 305



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   + D G+ PD++TY T+I G C    +D AV+L  ++    ++PN + ++ L+ 
Sbjct: 113 AVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLH 172

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR +    +F +M  +G + +VV Y+ LID   +   +K A  V + M E  + P
Sbjct: 173 GYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEP 232

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G   EA+ L  +M   G+ PD +  +TL
Sbjct: 233 NVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTL 275



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--VQLKPN 61
           KE  +  AL L   ++++G++PD++TYNT+I G  S+  +DEA+ L E++     +++P+
Sbjct: 246 KEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPD 305

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  +I   CK G M  A  + + M E G + N+V ++ LI G  +   +K A ++ +
Sbjct: 306 LMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMD 365

Query: 122 EMCENNISPN 131
           EM  + + P+
Sbjct: 366 EMASSGLQPD 375



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           L ++  LDAAL L   ++        P+ I+Y T++   C+  R  +AV L   +    +
Sbjct: 66  LCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGV 125

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           +P+ +T+  LI   C    +D A  + ++M E G + NVV YSCL+ GY K+   +S   
Sbjct: 126 RPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGK 185

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           V+EEM    I P++             G+  +A ++ D M   G+ P+
Sbjct: 186 VFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPN 233



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 15/153 (9%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSITFTILIDAFCKEGRMDDAT 82
           D ++YNT++   C    LD A+ L   ++    +  +PN+I++T L+ A C + R   A 
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +   M + G + +VVTY  LI G   + ++ +A ++  EMCE+ I PN+          
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              GR     ++++ M   GI PD ++ + L D
Sbjct: 175 CKTGRWESVGKVFEEMSGRGIEPDVVMYTALID 207



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A++L  ++   GL+PD  TY+ +I G+C + +++ A     ++    ++P 
Sbjct: 351 LLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPE 410

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L+ A C +G M  A  +F++M ++  K +   YS +I G FKS   K A +  +
Sbjct: 411 PVHYIPLLKAMCDQGMMGQARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLK 469

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +  + P+             +G    A ++   M  +G +PD  +  +L
Sbjct: 470 DMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSL 521



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 11/160 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++   + + G   +++ +N +I G   ++++ +A++L +++    L+P+S T++ILI+
Sbjct: 325 ALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILIN 384

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN---- 126
            FCK  +++ A    S+M  +G +   V Y  L+        M  A D++ EM  N    
Sbjct: 385 GFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLD 444

Query: 127 --NISPNI-----AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
               S  I     +G    A +    M+  G++PD +  S
Sbjct: 445 AAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYS 484



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 7   HLDAALKLFGQLT--DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
            +D A+ L  ++   +  + PD++T+N++I G C +  + +A+Q+   +     + N + 
Sbjct: 284 EMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVA 343

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F +LI    +  ++  A  +  +M   G + +  TYS LI+G+ K + ++ A     EM 
Sbjct: 344 FNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMR 403

Query: 125 ENNISPNIAGRPTEAMQLYDSMLRNGIM 152
              + P     P   + L  +M   G+M
Sbjct: 404 HQGMEPE----PVHYIPLLKAMCDQGMM 427



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++ DR  + D   Y+T+I G         A +  + +    L P+++T++I I+
Sbjct: 430 ARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPIN 488

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            F K G +  A  +  +M   G   +V  +  LI GY    + +   ++  EM   +++
Sbjct: 489 MFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVA 547


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 18/172 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A +++ ++ ++G++PD++ +NT+I G     R  EAV++FE +      PN  T+T
Sbjct: 346 NLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 405

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   CK+G+MD A   F +M E   + +V TY+CL+ GY  ++ M     V EEM + 
Sbjct: 406 MLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQK 465

Query: 127 NISPN----------IAGR--PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              P+          +  R  P +A ++Y  M++ G+ P      T+  YN+
Sbjct: 466 GCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEP------TIHTYNM 511



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A++ F ++ +   +PD+ TY  ++ GY +  ++D    + E++T     P++ 
Sbjct: 413 KQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDAR 472

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEE 122
           T+  LI         DDA  ++ KM++KG +  + TY+ ++  YF    N      V+EE
Sbjct: 473 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGCAVWEE 532

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           M +  I P++             GRP EA +  + M+  G+
Sbjct: 533 MHQRGICPDVNSYTVFINRHIRHGRPEEAYKYIEEMINKGM 573



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 5/121 (4%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+ GQ +     PD+ +Y  ++  +C+   L EA +++ ++    + P+ +    +I+  
Sbjct: 322 KMHGQYS-----PDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGL 376

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            +  R  +A  MF  M  KGP  NV TY+ LI  + K   M  A + +EEM E    P++
Sbjct: 377 LRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDV 436

Query: 133 A 133
           A
Sbjct: 437 A 437



 Score = 44.3 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 1/116 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGY-CSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D A +++ ++  +GLEP I TYN ++  Y    +       ++E++    + P+  ++T+
Sbjct: 488 DDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGCAVWEEMHQRGICPDVNSYTV 547

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            I+   + GR ++A     +M+ KG KA  + Y+     + K+      F++ +++
Sbjct: 548 FINRHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAADFSKAGKPDILFELAQKV 603



 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +   I  + +   +  AV +FE +          +F  L+ A  KEG   +A  +F KM 
Sbjct: 265 FKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKM- 323

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
                 ++ +Y+ L+  +  ++N+  A  V+ EM E  + P++              R  
Sbjct: 324 HGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRP 383

Query: 138 EAMQLYDSMLRNGIMPD 154
           EA+++++ M   G  P+
Sbjct: 384 EAVKMFELMKAKGPPPN 400


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 13/170 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A  LF ++      PD++TYNT++   C   R++E  +LFE +      PN ITF+
Sbjct: 200 QLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFS 259

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+ G ++ A  +F  MLE G K N  TY+ LI G  +++ +  A +++E+M + 
Sbjct: 260 TLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQA 319

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRN-GIMPDGLLLSTLAD 163
            I P+              G   EA +LY  M    G+ P  +  +TL D
Sbjct: 320 CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLID 369



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F Q+   G +P++  YN ++ G CS  +L++A  LF ++      P+ +T+  L+D
Sbjct: 169 ASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLD 228

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK  R+++   +F  M   G   NV+T+S LI G  ++  ++ A +V+  M E    P
Sbjct: 229 AVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKP 288

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N       I+G     +  +A +L++ M +  I PD +  ++L
Sbjct: 289 NKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSL 331



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L+ AL++FG + + G +P+  TY T+I G C   ++ +A +LFEK+T   + P+
Sbjct: 265 LCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPD 324

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++ +  LI  +CK G MD+A  ++ +M    G +  +VT++ LIDG+ K   +  A ++ 
Sbjct: 325 AVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELV 384

Query: 121 EEMCENNISPN-------IAG--RPT---EAMQLYDSMLRNGIMPD 154
            EM    ++ +       IAG  R T   EA+++Y  M     + D
Sbjct: 385 AEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLD 430



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD +LK+  ++  RG  P +  Y++++       R+D A  LF+++      P+
Sbjct: 90  LAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPD 149

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  LI   C+ G++ DA+  F +M + G + NV  Y+ L+ G   S  ++ A  ++ 
Sbjct: 150 RLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFA 209

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  ++ SP++            A R  E  +L+++M   G +P+ +  STL
Sbjct: 210 EMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTL 261



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 94/185 (50%), Gaps = 13/185 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE   + + K+  ++   G  PD+  +N ++ G+   N +++A ++++ +     KP+
Sbjct: 20  LVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++ ILI    K G++D++  + S+M+ +G   ++  YS L+    K++ +  A  +++
Sbjct: 80  NVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFD 139

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM      P+             AG+  +A + +  M ++G  P+  + + L  + L SS
Sbjct: 140 EMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLL-HGLCSS 198

Query: 170 GSQEH 174
           G  E 
Sbjct: 199 GQLEQ 203



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   KLF  +   G  P++IT++T+I G C    L++A+++F  +     KPN  
Sbjct: 232 KARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKY 291

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI   C+  ++  A  +F KM +     + V Y+ LI GY K  +M  A  +Y EM
Sbjct: 292 TYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 5/153 (3%)

Query: 4   KECHLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K   +D A KL+ +++   GL+P I+T+NT+I G+C L +L  A +L  ++    L  +S
Sbjct: 337 KRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADS 396

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ ILI    +  ++D+A  ++ +M EK    + V+    + G  K+ N+  A+ V+E 
Sbjct: 397 CTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEA 456

Query: 123 MCENNISPNIAGRPTEAMQLYDSMLRNGIMPDG 155
             ++   PN    P     L +S+++ G + D 
Sbjct: 457 TRKSGAVPN----PETFRILSESLIKLGRVEDA 485



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 92/181 (50%), Gaps = 12/181 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A +++  + + G +PD ++Y+ +I G   + +LDE++++  ++      P+   ++
Sbjct: 60  NMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYS 119

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+ A  K  R+D A+ +F +M+  G   + + +  LI G  ++  +K A + +++M ++
Sbjct: 120 SLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKH 179

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
              PN+            +G+  +A  L+  M  +   PD +  +TL D   ++   +E 
Sbjct: 180 GCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEG 239

Query: 175 C 175
           C
Sbjct: 240 C 240



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D+ +  ++ TY++II       + +E+ ++ E++      P+   F  ++  F +   
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           M+ A  ++  M+E G K + V+Y  LI G  K   +  +  +  EM     +P++     
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  A R   A  L+D M+R G  PD L+   L
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYEL 156



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +L  ++  +GL  D  TY  +I G     +LDEA+++++++   +   + ++   
Sbjct: 377 LGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVS 436

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            +   CK G +D A  +F    + G   N  T+  L +   K   ++ A  + E     +
Sbjct: 437 FVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARD 496

Query: 128 IS 129
           I+
Sbjct: 497 IT 498



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   LD AL+++ Q+ ++    D ++  + + G C    +D+A  +FE        PN
Sbjct: 406 LSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPN 465

Query: 62  SITFTILIDAFCKEGRMDDA 81
             TF IL ++  K GR++DA
Sbjct: 466 PETFRILSESLIKLGRVEDA 485


>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
          Length = 542

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L++ALK+  ++   G+ PD++TY T++  YC+   L+ A QLF+ +     +P++  +T+
Sbjct: 216 LNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTV 275

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +C   ++ DA  +  +M   G + N VTYS +I+   K +    A D+  EM    
Sbjct: 276 LIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEARDLTREMLGAG 335

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             P+              G+  EA +++  M++  + PD  ++STL
Sbjct: 336 YVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTL 381



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P++++ N ++ G   +  L+ A+++ +++    + P+ +T+T ++ A+C +G ++ A 
Sbjct: 196 ITPNLVSCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQ 255

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG-------- 134
            +F  ++  G + +   Y+ LIDGY   + ++ A  + +EM    + PN           
Sbjct: 256 QLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEAC 315

Query: 135 ----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
               + TEA  L   ML  G +PD  L + + D   Q   + E
Sbjct: 316 CKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGE 358



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A KLF +L +RG  P ++TYN++I G C    L EA ++++ +   + +PN
Sbjct: 385 LCKKGMVQEARKLFDEL-ERGFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPN 443

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           ++T+  LI  FCK G+ ++   +F +M+ +G   +   Y  L+D   K
Sbjct: 444 AMTYEALIKGFCKIGKSNEGYALFKEMMSRGCTPSKFLYQALVDSLSK 491



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +++ Q+  + + PD    +T+I   C    + EA +LF++L    L P+ +T+  LI 
Sbjct: 359 ANEMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEARKLFDELERGFL-PSLLTYNSLII 417

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ G + +A  ++  M+E+  + N +TY  LI G+ K       + +++EM     +P
Sbjct: 418 GLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMMSRGCTP 477

Query: 131 N 131
           +
Sbjct: 478 S 478


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+ P++ T N +I  +C LNR+  A  +  K+  +  +P+  TFT
Sbjct: 60  HYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFT 119

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F KM+++G + NVVTY  LI+G  K  N  +A  +   M + 
Sbjct: 120 TLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG 179

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           N  P++              + TEA  L+  M+  GI PD    ++L 
Sbjct: 180 NCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLV 227



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 13/177 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++ D G +P+++TY T+I G C +     A++L   +     +P+ + 
Sbjct: 128 EGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVI 187

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T +ID+ CK+ ++ +A  +FS+M+ +G   ++ TY+ L+         K    +  +M 
Sbjct: 188 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV 247

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQS 168
            + I P++             G+ TEA ++ D M++ G+ PD +  +TL D + LQS
Sbjct: 248 NSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQS 304



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 74/136 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF Q+  +G+ PDI TY +++   C+L        L  ++   ++ P+
Sbjct: 195 LCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPD 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG++ +A  +   M+++G + +VVTY+ L+DG+     M  A  V++
Sbjct: 255 VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFD 314

Query: 122 EMCENNISPNIAGRPT 137
            M     +P++    T
Sbjct: 315 MMVRKGFAPDVISYTT 330



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL+    A  +  ++   G +PD  T+ T+I G C   ++ EA+ LF+K+     +PN 
Sbjct: 91  CHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNV 150

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  LI+  CK G    A  +   M +   + +VV Y+ +ID   K + +  AF+++ +
Sbjct: 151 VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQ 210

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + I+PD ++ ST+ D
Sbjct: 211 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 263



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 41/179 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A ++   +  RG+EPD++TY T++ G+C  + +DEAV++F+ +      P+
Sbjct: 265 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 324

Query: 62  SITFTILIDAFCKEG----------------------------RMDDATM------MFSK 87
            I++T LI+A  K+G                            R D   +      + ++
Sbjct: 325 VISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMKLFEKGRTLLNE 384

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSM 146
           M+      NVV +S ++D   K   +  A DV + M +  + PN       A++++D+M
Sbjct: 385 MVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPN-------AVKVFDTM 436



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 84/169 (49%), Gaps = 11/169 (6%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C       L  Q+ +  + PD++ ++T++   C   ++ EA ++ + +    ++P+ +T+
Sbjct: 234 CEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTY 293

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ----NMKSAFDVYE 121
           T L+D  C +  MD+A  +F  M+ KG   +V++Y+ LI+   K      +++    + +
Sbjct: 294 TTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVK 353

Query: 122 EMCENNISPNIAGRPTEAMQLYDS-------MLRNGIMPDGLLLSTLAD 163
           E  +      +     + M+L++        M+ + IMP+ ++ ST+ D
Sbjct: 354 ETPDAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVD 402


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 77/127 (60%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  L  ++ ++GL P+I TYN ++ G C    LD A +LF+KL    L PN +T+ 
Sbjct: 607 YVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYN 666

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILID +CK G   +A  +  KML++G   +++TYS LI+G+ K  +++ A  +  EM  +
Sbjct: 667 ILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKAS 726

Query: 127 NISPNIA 133
           N+   IA
Sbjct: 727 NVDQTIA 733



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 73/131 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A + F  L+     PD  TY T+I G+ +   ++EA  L +++    L PN
Sbjct: 567 LCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPN 626

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L++  CK G +D A  +F K+  KG   NVVTY+ LIDGY KS + + A D+  
Sbjct: 627 ITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRG 686

Query: 122 EMCENNISPNI 132
           +M +  ISP+I
Sbjct: 687 KMLKEGISPSI 697



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL L+  +  RG+   I  +NT+I G C +  +D A + F+++  +  KP+
Sbjct: 322 LFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPD 381

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L D +CK G +++A  +  KM ++    ++  Y+ LI G F S+ +    D+  
Sbjct: 382 GITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLA 441

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           EM    +SPN+             GR  +A   Y  M+  G  P+ ++ S + 
Sbjct: 442 EMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIV 494



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++  ++   GL+ ++   N++I GYC   ++ E  +L   +  + LKP+S ++  L+D
Sbjct: 191 AIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVD 250

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++G    A  +  +ML KG +  VVTY+ L+ G  +  + K A  ++  M +  ++P
Sbjct: 251 GYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTP 310

Query: 131 NIAGRPT------------EAMQLYDSMLRNGI 151
           N  G  T             A+ L+D +L  GI
Sbjct: 311 NEVGYCTLLDGLFKMGDFSRALTLWDDILARGI 343



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ + YN  + G C   ++++A + F  L+     P++ T+  LI  F   G +++A  +
Sbjct: 555 PNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNL 614

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             +M+ KG   N+ TY+ L++G  KS  +  A  +++++    + PN+            
Sbjct: 615 RDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCK 674

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +G P EA+ L   ML+ GI P  +  S+L +   + S  +E
Sbjct: 675 SGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEE 715



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K+C ++ A K+  ++  + G+  D   Y  +I GYC + ++ +A+++ +++  V LK N 
Sbjct: 148 KQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNL 207

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
                LI+ +CK G++ +   +   M +   K +  +Y  L+DGY +      AF+V ++
Sbjct: 208 FVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQ 267

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P +             G   +A++L+  ML+ G+ P+ +   TL D
Sbjct: 268 MLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLD 320



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 69/122 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A +LF +L  +GL P+++TYN +I GYC      EA+ L  K+    + P+
Sbjct: 637 LCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPS 696

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ LI+ FCK+  +++A  + ++M        + T+S L++G  +  ++K    ++ 
Sbjct: 697 IITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKKMSKLHN 756

Query: 122 EM 123
            M
Sbjct: 757 MM 758



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L+PD  +Y T++ GYC      +A  + +++    ++P  +T+  L+   C+ G   DA 
Sbjct: 238 LKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDAL 297

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            ++  ML++G   N V Y  L+DG FK  +   A  +++++    I+ +I          
Sbjct: 298 RLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGL 357

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G    A + +  M   G  PDG+   TL+D
Sbjct: 358 CKMGEMDGAKETFKRMEELGCKPDGITYRTLSD 390



 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 22/167 (13%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           + L  ++  RGL P+++TY  +I G+C   RLD+A   + ++      PN I  + ++ +
Sbjct: 437 IDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSS 496

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS--AFDVYEEMCE---- 125
             + GR+D+A M+  KM++      V+ + CL D  F++ +++    + + + + E    
Sbjct: 497 LYRLGRIDEANMLLQKMVDFDL---VLDHRCLED--FQNADIRKLDCWKIADTLDESAIK 551

Query: 126 ----NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               NN+  NIA       G+  +A + +  +      PD     TL
Sbjct: 552 FSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTL 598



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K     +A+ ++ Q+    + PD+ T   ++  YC   +++ AV+   ++  +  + N
Sbjct: 41  LVKRGESYSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELN 100

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++  L+D +   G ++ A  +   M EKG   N VT + LI GY K   ++ A  V  
Sbjct: 101 AVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLR 160

Query: 122 EM-CENNISPN------------IAGRPTEAMQLYDSMLRNGI 151
           EM  E+ +  +              G+  +A+++ D ML+ G+
Sbjct: 161 EMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGL 203



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 64/121 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F  +   G +P + + N+++           AV +++++  + + P+  T  I+++
Sbjct: 15  ALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAIMVN 74

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+CK G+++ A     +M + G + N V+Y+ L+DGY    +++ A  V + M E  +  
Sbjct: 75  AYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMR 134

Query: 131 N 131
           N
Sbjct: 135 N 135



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 35/159 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------------- 46
           L K   +D A + F ++ + G +PD ITY T+  GYC +  ++EA               
Sbjct: 357 LCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPS 416

Query: 47  --------------------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                               + L  ++    L PN +T+  LI  +C +GR+D A   + 
Sbjct: 417 IEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYF 476

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +M+ KG   NV+  S ++   ++   +  A  + ++M +
Sbjct: 477 EMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVD 515



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 49/90 (54%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L G++   G+ P IITY+++I G+C  + ++EA++L  ++    +     TF+ L++
Sbjct: 681 ALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVE 740

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
              + G +   + + + M    P A + ++
Sbjct: 741 GCIQHGDVKKMSKLHNMMHMACPSAGITSH 770


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A K+   + + G+E D ITYN +I G C  +++DEA+QL + +     KP+  TF 
Sbjct: 472 NMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFN 531

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I +  +C  G++++   +  +M  +G K ++VTY  +IDGY K+++M  A +   E+ +N
Sbjct: 532 IFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKN 591

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN              G  ++A+ + D+M  NGI P  +  ++L
Sbjct: 592 GLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSL 638



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 24/186 (12%)

Query: 7   HLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            LD A K+FG++ D + + PD+ TY  +I   C    +D A  +  +L    ++P  +T+
Sbjct: 190 QLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTY 249

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            +L+DA CK GR+++A  +  +M+E   + ++VT+  LI G  + Q       V +EM  
Sbjct: 250 NVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQG 309

Query: 126 NNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS---- 169
             I+PN              G  +EA++L+D M+  GI        T+  YNL +     
Sbjct: 310 FGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIK------QTVVTYNLIAKALCK 363

Query: 170 -GSQEH 174
            G  EH
Sbjct: 364 EGEMEH 369



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 72/128 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++L   +  RG +PD+ T+N  +  YC+L +++E + L +++    LKP+ +
Sbjct: 504 KASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIV 563

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +ID +CK   M  A    +++++ G + N V Y+ LI GY ++ N+  A  + + M
Sbjct: 564 TYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTM 623

Query: 124 CENNISPN 131
             N I P 
Sbjct: 624 KYNGIQPT 631



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 48/199 (24%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTI---ICG---------------------YCS 39
           ++ H   ALKLF ++  +G++  ++TYN I   +C                      +CS
Sbjct: 328 RKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCS 387

Query: 40  L------------NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           L             RLD  ++L  ++    LKPN    T  I   CK G+ ++A  ++ +
Sbjct: 388 LFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQ 447

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGR 135
           +L KG   NV T + LI G  +  NMK A  V + M       + I+ NI       A +
Sbjct: 448 VLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASK 507

Query: 136 PTEAMQLYDSMLRNGIMPD 154
             EA+QL D M++ G  PD
Sbjct: 508 MDEAIQLRDDMIKRGFKPD 526



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 47/197 (23%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L L  Q+   GL+PDI+TY TII GYC    + +A +   +L    L+PN++ +  LI  
Sbjct: 547 LHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGG 606

Query: 72  FCKEGRMDDA-----TM------------------------------MFSKMLEKGPKAN 96
           + + G + DA     TM                              +F++ + K  +  
Sbjct: 607 YGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELG 666

Query: 97  VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYD 144
           V+ Y+ +I G+ K   +  A   ++EM    I PN             +G   EA +L+D
Sbjct: 667 VIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFD 726

Query: 145 SMLRNGIMPDGLLLSTL 161
            M+  GI+PD +  +TL
Sbjct: 727 EMVSLGIVPDSVSYNTL 743



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +   +   G++P  +TYN+++   C    ++E   +F +     ++   I +TI+I 
Sbjct: 616 AIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQ 675

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK G++D+A M F +M  +G   N +TY+ L+  Y KS N + A  +++EM    I P
Sbjct: 676 GFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVP 735

Query: 131 N 131
           +
Sbjct: 736 D 736



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 12/181 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +DAA  +  +L   G++P ++TYN ++   C   R++EA +L  ++   +++P+
Sbjct: 221 LCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPS 280

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ILI    +  +  +   +  +M   G   N V Y+ +I  + +  +   A  +++
Sbjct: 281 IVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFD 340

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM    I   +             G    A ++ D ML  G+M    L +++  ++L+ +
Sbjct: 341 EMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGT 400

Query: 170 G 170
           G
Sbjct: 401 G 401



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   ++    +F Q   + +E  +I Y  II G+C + ++DEAV  F+++    + PN 
Sbjct: 643 CHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNK 702

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+T L+ A+ K G  ++A+ +F +M+  G   + V+Y+ LI G+ +  ++    +   E
Sbjct: 703 MTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAE 762

Query: 123 M 123
           M
Sbjct: 763 M 763



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD  L+L  ++  R L+P+       I   C   + +EA +++ ++    L  N  T  
Sbjct: 402 RLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSN 461

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+   M +AT +   M+  G + + +TY+ +I G  K+  M  A  + ++M + 
Sbjct: 462 ALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKR 521

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P++             G+  E + L D M   G+ PD +   T+ D
Sbjct: 522 GFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIID 570



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 55/99 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+  F ++  RG+ P+ +TY T++  Y      +EA +LF+++  + + P+S+++  
Sbjct: 683 IDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNT 742

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           LI  FC+   +D      ++M  +  K +  +Y+  +DG
Sbjct: 743 LISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDG 781



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  + + A KLF ++   G+ PD ++YNT+I G+C ++ LD+ V+   +++   LK +  
Sbjct: 714 KSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGC 773

Query: 64  TFTILIDA----FCKEGRMDDA 81
           ++   +D     +C++  + +A
Sbjct: 774 SYNAFVDGITTPWCQKEAVSNA 795


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++ DRG+ P +  +N +I G C   R  +A+  F+ +   +  P+
Sbjct: 40  LCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPD 99

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVY 120
            ITF IL+DA  K GR+++A  +F  M        NVVTY+ +I+G  K   +  A ++ 
Sbjct: 100 IITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL 159

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M E    PN+            AGR  +   L   M R G  PD ++ +TL
Sbjct: 160 DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A++L   + + G  P++ITY+ ++ G C   R D+   L +++T    +P+
Sbjct: 146 LCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +  L++  CK  R+D+A  +   M+  G    VVTY+ L++ + +S+ +  AF + +
Sbjct: 206 VIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQ 265

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E    P+       IAG     R  +A  L   M+    +PD +  ST+ D
Sbjct: 266 VMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIID 319



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +L   +++RG  PD+I YNT+I G C   RLD+A  L +++   +  P+ IT++
Sbjct: 256 QVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 67  ILIDAFCKEGRMD------DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +ID  CK+ R+D       A  +   M + G   N  TY+ +I+G  +++  + A  + 
Sbjct: 316 TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375

Query: 121 EEMCENNISPNIA 133
             M ++ + P+++
Sbjct: 376 RRMIDSEVVPDLS 388



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L+K   ++ A ++F  + T     P+++TY T+I G C   +LD A++L + +      P
Sbjct: 110 LVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCP 169

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N IT+++L++  CK GR D    +  +M  +G + +V+ Y+ L++G  KS+ +  A ++ 
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELV 229

Query: 121 EEMCENNISPNI 132
           + M  +   P +
Sbjct: 230 QLMIRSGCYPTV 241



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA ++   +   G  P+  TY  +I G C   +  +A+ L  ++   ++ P+  +F++
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM 392

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I + CK   +D A  +F  M E+  K N V Y+ LIDG  K   +  A  V+E M E +
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-S 451

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
             P +A            GR  EA+++ + M+     PDG
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG 491



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD AL+L   +   G  P ++TYN+++  +C   ++D A +L + ++     P+
Sbjct: 216 LCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN------MKS 115
            I +  +I   C++ R+DDA  +  +M+      +V+TYS +IDG  K         +++
Sbjct: 276 VINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEA 335

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           A ++ E M +    PN             A +  +A+ L   M+ + ++PD
Sbjct: 336 ACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPD 386



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 10/155 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE------AVQLFEKLTC 55
           L ++  LD A  L  Q+      PD+ITY+TII G C   R+D       A ++ E +  
Sbjct: 286 LCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQ 345

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
               PN+ T+ ++I+  C+  +   A  +  +M++     ++ ++S +I    KS ++ +
Sbjct: 346 TGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDA 405

Query: 116 AFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNG 150
           A+ ++  M E    PN    P     L D + + G
Sbjct: 406 AYKIFGMMSERECKPN----PVAYAALIDGLSKGG 436



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LDAA K+FG +++R  +P+ + Y  +I G      +D+AV++FE L     +P 
Sbjct: 397 LCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE-LMVESFRPG 455

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++D  C  GR+++A  M   M+ K    +  +Y  LI G  +   ++ A+++++
Sbjct: 456 VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQ 515

Query: 122 EM 123
            +
Sbjct: 516 AV 517



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 16/176 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++      A++LF    +    P+  TY ++I G C   +LD+A +L +++    + P
Sbjct: 7   LLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPP 63

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
                  +I   CK GR  DA   F  +       +++T++ L+D   KS  ++ AF ++
Sbjct: 64  GVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIF 123

Query: 121 EEM-CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E M   +   PN+             G+   A++L D M   G  P+ +  S L +
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVE 179



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++F +L      P + TYN+++ G C + R++EAV++ E +   +  P+
Sbjct: 432 LSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++  LI   C+   +++A  +F  +  KG    V  Y+ L++   K + +  A  V  
Sbjct: 491 GASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVAN 550

Query: 122 EMCE 125
           ++ E
Sbjct: 551 KLIE 554



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 47/88 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+++   +  +   PD  +Y  +I G C ++ ++EA +LF+ +           + 
Sbjct: 471 RIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYN 530

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPK 94
           +L++  CK+ R+ DA  + +K++E G K
Sbjct: 531 VLVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++TY T+I G   + RL EAV LF ++    +KP+  TF IL+D  CKEG M  A  +
Sbjct: 237 PDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNV 296

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
            + M+++G  +N+VTY+ L+DGYF  +    A  V+  M    ++P++            
Sbjct: 297 LAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCK 356

Query: 138 -----EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                EA+ L+  M    + P+ +  ++L D
Sbjct: 357 TKMVDEAVNLFKEMHSKSMAPNTVTYNSLID 387



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  +F  +  RG+ PD+ +Y+ +I G C    +DEAV LF+++    + PN++T+  L
Sbjct: 326 NKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSL 385

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID   K GR+ DA  + ++M  +G  A+V+TYS L+D   K+  +  A  +  ++ +  I
Sbjct: 386 IDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGI 445

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            PNI             GR  +A  +Y  +L  G   D
Sbjct: 446 QPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLD 483



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ LF ++  + + P+ +TYN++I G     R+ +A  L  ++       +
Sbjct: 354 LCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPAD 413

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+DA CK  ++D A  + +K+ ++G + N+ TY+ L+DG  K+  +K A  VY+
Sbjct: 414 VITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQ 473

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           ++       ++             G   EA+ L   M  NG +PD +   TL 
Sbjct: 474 DLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLV 526



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 77/144 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  A  L  ++ +RG   D+ITY++++   C  +++D+A+ L  K+    ++PN
Sbjct: 389 LLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPN 448

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TIL+D  CK GR+ DA  ++  +L KG   +V  Y+ +++G  K      A  +  
Sbjct: 449 IYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVS 508

Query: 122 EMCENNISPNIAGRPTEAMQLYDS 145
           +M +N   P+     T    L+++
Sbjct: 509 KMEDNGCIPDAVTYETLVRALFEN 532



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 88/170 (51%), Gaps = 11/170 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  +G++ +I+TYN+++ GY  + + ++A  +F  +    + P+
Sbjct: 284 LCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPD 343

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +++I+I+  CK   +D+A  +F +M  K    N VTY+ LIDG  K   +  A+D+  
Sbjct: 344 VQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVN 403

Query: 122 EMCENNISPNIAGRPTEAM---QLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
           EM          G+P + +    L D++ +N  +   + L++ + D  +Q
Sbjct: 404 EMHNR-------GQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQ 446



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ LF Q+  + ++PD+ T+N ++ G C    + +A  +   +    +  N +T+  
Sbjct: 255 LKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNS 314

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +    + + AT +F+ M  +G   +V +YS +I+G  K++ +  A ++++EM   +
Sbjct: 315 LMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKS 374

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++PN              GR ++A  L + M   G   D +  S+L D
Sbjct: 375 MAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLD 422



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   A+    Q+  + ++PD+ T+N +I  +C L  L+ A  +  K+  +   P+
Sbjct: 74  LVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPD 133

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T T LI   C  G++ +A      ++ KG   + V+Y  LI+G  K+   ++A  V  
Sbjct: 134 TVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLR 193

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           ++    + PN+    T             A  L   M+   I PD +  +TL
Sbjct: 194 KIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTL 245



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 47/191 (24%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL     +  +G   D ++Y T+I G C       A+Q+  K+  + ++PN + +  +ID
Sbjct: 153 ALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIID 212

Query: 71  AFCKE-----------------------------------GRMDDATMMFSKMLEKGPKA 95
           + CK+                                   GR+ +A  +F++ML K  K 
Sbjct: 213 SLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKP 272

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           +V T++ L+DG  K   MK A +V   M +  +  NI              +  +A  ++
Sbjct: 273 DVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVF 332

Query: 144 DSMLRNGIMPD 154
           ++M R G+ PD
Sbjct: 333 NTMARRGVTPD 343



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++ D+G++P+I TY  ++ G C   RL +A  +++ L       +
Sbjct: 424 LCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLD 483

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + ++++  CKEG  D+A  + SKM + G   + VTY  L+   F++     A  +  
Sbjct: 484 VKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLR 543

Query: 122 EM------CENNISPN 131
           EM        +NIS N
Sbjct: 544 EMIVQGSAVGSNISSN 559



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 24/158 (15%)

Query: 7   HLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           ++D A+  F  +   R     I  +N I+     LN    A+   +++   Q++P+  TF
Sbjct: 43  NVDDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTF 102

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            ILI+ FC  G ++ A  + +K+ + G   + VT + LI G                +C 
Sbjct: 103 NILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKG----------------LCL 146

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N       G+  EA+  +D ++  G   D +   TL +
Sbjct: 147 N-------GKVREALHFHDDVIAKGFHLDQVSYGTLIN 177


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +LF ++  +G+ P II+YN++I G+C   + +E+ +L +++    L+P+ +TF +L
Sbjct: 232 DEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVL 291

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  CKEG++ +A  +   M+E G   ++VTY+ LI+G+    ++ SA +++  M     
Sbjct: 292 IDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGC 351

Query: 129 SPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++              +  EAM+LY+ ML  G  P+ +   +L
Sbjct: 352 EPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 396



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 18/174 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L      F  +  RG  P+I+TYNT+I G C  +R+ EA +LF ++  +   P+ +T+  
Sbjct: 120 LREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGT 179

Query: 68  LIDAFCKEGRMDDATMMFSKML------EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           LI   C  G ++ A  +  +ML      E   K NV+TY+ ++DG  K      A  ++E
Sbjct: 180 LIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE 239

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P+I            AG+  E+ +L D ML  G+ PD +  + L D
Sbjct: 240 EMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLID 293



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 73/121 (60%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+KLF +L     + +I   N +I G C   +L+ A +LFEKL+    +PN +T+TI+I 
Sbjct: 444 AMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIH 503

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC+EG++D A ++  KM   G   +++TY+ L+ G+++S  ++    +   M + ++SP
Sbjct: 504 GFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSP 563

Query: 131 N 131
           +
Sbjct: 564 D 564



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 94/177 (53%), Gaps = 18/177 (10%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC------VQL 58
           E  +  A +LF ++   G  PD++TY T+I G C    ++ A++L +++        +  
Sbjct: 152 EHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINC 211

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           KPN IT+ I++D  CK GR D+A  +F +M  +G   ++++Y+ LI G+  +   + +  
Sbjct: 212 KPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKR 271

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + +EM +  + P++             G+  EA +L   M+ +GI+PD +  ++L +
Sbjct: 272 LLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIE 328



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L++A +LF  +  +G EPD+I+YN +I GY    +++EA++L+ ++  V  +PN IT+  
Sbjct: 336 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 395

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+      G++DDA  +FS M   G   N  TY   +DG  K+  +  A  ++ E+  +N
Sbjct: 396 LLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSN 455

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
               I            AG+   A +L++ +   G  P+
Sbjct: 456 FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPN 494



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H      L+ Q+   GL  D  T N ++   C++NRL E    F  +      PN
Sbjct: 79  LAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPN 138

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   C E R+ +AT +F +M + G   +VVTY  LI G   + N+  A  +++
Sbjct: 139 IVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQ 198

Query: 122 EMC------ENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           EM       E N  PN+             GR  EA QL++ M   G++P
Sbjct: 199 EMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIP 248



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A KL G + + G+ PD++TYN++I G+C +  L+ A +LF  +     +P+
Sbjct: 295 LCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPD 354

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++ +LI+ + K  ++++A  ++++ML  G + NV+TY  L+ G F +  +  A  ++ 
Sbjct: 355 VISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFS 414

Query: 122 EMCENNISPN 131
            M  + I+ N
Sbjct: 415 VMKAHGIAEN 424



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A+KL+ ++   G  P++ITY++++ G     ++D+A +LF  +    +  NS 
Sbjct: 367 KTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSY 426

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I +D  CK   + +A  +F+++     K  +   +CLIDG  K+  +++A++++E++
Sbjct: 427 TYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKL 486

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 PN+             G+  +A  L   M  NG  PD +  +TL
Sbjct: 487 SNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTL 536



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KLF  +   G+  +  TY   + G C  + L EA++LF +L     K        
Sbjct: 406 VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNC 465

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G+++ A  +F K+  +G + NVVTY+ +I G+ +   +  A  + ++M  N 
Sbjct: 466 LIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG 525

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +P+I            + +  E +QL   M +  + PD +  S + D
Sbjct: 526 CTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD 573



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 59/104 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A +LF +L++ G EP+++TY  +I G+C   ++D+A  L +K+      P+
Sbjct: 470 LCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPD 529

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            IT+  L+  F +  ++++   +  +M +K    + +T S ++D
Sbjct: 530 IITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD 573



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +D A  L  ++   G  PDIITYNT++ G+   N+L+E VQL  ++    + P++I
Sbjct: 507 REGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAI 566

Query: 64  TFTILIDAFCKEGRMDDATMMFSKM-LEKG 92
           T +I++D   K+ +  +   +  +  ++KG
Sbjct: 567 TCSIVVDMLSKDEKYQECLHLLPRFPIQKG 596



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 54/123 (43%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  F  +      P + ++N ++ G   +    +   L+ ++    L  +  T  IL++
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R+ +    F+ +L +G   N+VTY+ LI G      +  A  ++  M +   +P
Sbjct: 113 CLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTP 172

Query: 131 NIA 133
           ++ 
Sbjct: 173 DVV 175


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++ DRG+ P +  +N +I G C   R  +A+  F+ +   +  P+
Sbjct: 40  LCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPD 99

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVY 120
            ITF IL+DA  K GR+++A  +F  M        NVVTY+ +I+G  K   +  A ++ 
Sbjct: 100 IITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL 159

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M E    PN+            AGR  +   L   M R G  PD ++ +TL
Sbjct: 160 DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL 212



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A++L   + + G  P++ITY+ ++ G C   R D+   L +++T    +P+
Sbjct: 146 LCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPD 205

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +  L++  CK  R+D+A  +   M+  G    VVTY+ L++ + +S+ +  AF + +
Sbjct: 206 VIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQ 265

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E    P+       IAG     R  +A  L   M+    +PD +  ST+ D
Sbjct: 266 VMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIID 319



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +L   +++RG  PD+I YNT+I G C   RLD+A  L +++   +  P+ IT++
Sbjct: 256 QVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 67  ILIDAFCKEGRMD------DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +ID  CK+ R+D       A  +   M + G   N  TY+ +I+G  +++  + A  + 
Sbjct: 316 TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375

Query: 121 EEMCENNISPNIA 133
             M ++ + P+++
Sbjct: 376 RRMIDSEVVPDLS 388



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L+K   ++ A ++F  + T     P+++TY T+I G C   +LD A++L + +      P
Sbjct: 110 LVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCP 169

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N IT+++L++  CK GR D    +  +M  +G + +V+ Y+ L++G  KS+ +  A ++ 
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELV 229

Query: 121 EEMCENNISPNI 132
           + M  +   P +
Sbjct: 230 QLMIRSGCYPTV 241



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA ++   +   G  P+  TY  +I G C   +  +A+ L  ++   ++ P+  +F++
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM 392

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I + CK   +D A  +F  M E+  K N V Y+ LIDG  K   +  A  V+E M E +
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-S 451

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
             P +A            GR  EA+++ + M+     PDG
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG 491



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD AL+L   +   G  P ++TYN+++  +C   ++D A +L + ++     P+
Sbjct: 216 LCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPD 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN------MKS 115
            I +  +I   C++ R+DDA  +  +M+      +V+TYS +IDG  K         +++
Sbjct: 276 VINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEA 335

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           A ++ E M +    PN             A +  +A+ L   M+ + ++PD
Sbjct: 336 ACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPD 386



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 10/155 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE------AVQLFEKLTC 55
           L ++  LD A  L  Q+      PD+ITY+TII G C   R+D       A ++ E +  
Sbjct: 286 LCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQ 345

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
               PN+ T+ ++I+  C+  +   A  +  +M++     ++ ++S +I    KS ++ +
Sbjct: 346 TGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDA 405

Query: 116 AFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNG 150
           A+ ++  M E    PN    P     L D + + G
Sbjct: 406 AYKIFGMMSERECKPN----PVAYAALIDGLSKGG 436



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LDAA K+FG +++R  +P+ + Y  +I G      +D+AV++FE L     +P 
Sbjct: 397 LCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE-LMVESFRPG 455

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++D  C  GR+++A  M   M+ K    +  +Y  LI G  +   ++ A+++++
Sbjct: 456 VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQ 515

Query: 122 EM 123
            +
Sbjct: 516 AV 517



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 16/176 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++      A++LF    +    P+  TY ++I G C   +LD+A +L +++    + P
Sbjct: 7   LLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPP 63

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
                  +I   CK GR  DA   F  +       +++T++ L+D   KS  ++ AF ++
Sbjct: 64  GVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIF 123

Query: 121 EEM-CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E M   +   PN+             G+   A++L D M   G  P+ +  S L +
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVE 179



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++F +L      P + TYN+++ G C + R++EAV++ E +   +  P+
Sbjct: 432 LSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++  LI   C+   +++A  +F  +  KG    V  Y+ L++   K + +  A  V  
Sbjct: 491 GASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVAN 550

Query: 122 EMCE 125
           ++ E
Sbjct: 551 KLIE 554



 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 47/88 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+++   +  +   PD  +Y  +I G C ++ ++EA +LF+ +           + 
Sbjct: 471 RIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYN 530

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPK 94
           +L++  CK+ R+ DA  + +K++E G K
Sbjct: 531 VLVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+   KL  ++ + G EPD  +YNT++   C   + +EA ++ EK+   +  P+
Sbjct: 207 LCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPD 266

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D FCK  +MD+A  +   M+ +     V+TY+ LI G+ ++  +  A+ V E
Sbjct: 267 VVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVME 326

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +  ISP++            AG+  EA +L + M+     PD +  S L +
Sbjct: 327 DMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVN 380



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 7/174 (4%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A ++   +   G+ PD++TYN ++ G C   +L+EA +L E +      P+ +T++
Sbjct: 317 RLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYS 376

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           IL++  CK G++DDA ++   MLE+G + N+VT++ +IDG+ K+  +     V E M E 
Sbjct: 377 ILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV 436

Query: 127 NISPNIAGRPT------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           + +P++    T      +A ++ D+    GI PD    S++ +  L S+G  E 
Sbjct: 437 SCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLE-GLCSTGKVEE 489



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A KL  ++ + GL PD + YN ++ G C  N+L+E  +L E++     +P++ ++  
Sbjct: 178 LDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT 237

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C+ G+ ++A  +  KM+EK    +VVTY+ L+DG+ K   M  A  + E+M    
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +P +            A R  +A ++ + M + GI PD +  + L D
Sbjct: 298 CAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLD 345



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 18/164 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A +L   + ++   PD++TY+ ++ G C L ++D+A  L E +     +PN
Sbjct: 347 LCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPN 406

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  +ID FCK G++D+   +   M E     +VVTYS LIDGY K+  M+ AF +  
Sbjct: 407 LVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL- 465

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
                 ISP+ A            G+  EA ++ D M + G  P
Sbjct: 466 -----GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPP 504



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 73/125 (58%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D ALK+   +++RG EP++ TY+ +I G C   R+++A+ + + +      P+  T+T L
Sbjct: 523 DEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSL 582

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID FCK  +MD A   F  M + G + + + Y+ LI G+ +S N++ A +V + M E   
Sbjct: 583 IDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGC 642

Query: 129 SPNIA 133
           +P+ A
Sbjct: 643 NPDAA 647



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +L   +  R   P +ITY T+I G+   +RL +A ++ E +    + P+ +
Sbjct: 279 KVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLV 338

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D  CK G++++A  +   M+EK    +VVTYS L++G  K   +  A  + E M
Sbjct: 339 TYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMM 398

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E    PN+            AG+  E  ++ + M      PD +  STL D
Sbjct: 399 LERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLID 450



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++   +T +G  P    Y  II G C + R DEA+++ + ++    +PN  T++I
Sbjct: 487 VEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSI 546

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CK  R++DA  +   MLEKG   +V TY+ LIDG+ K   M +A+  ++ M ++ 
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSG 606

Query: 128 ISP-----NI-------AGRPTEAMQLYDSMLRNGIMPDG 155
             P     NI       +G   +A+++   ML  G  PD 
Sbjct: 607 CEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDA 646



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 16/163 (9%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE-KLTCVQLKPNSITFTILID 70
           L++  ++  R   PD+IT+NTI+  YC +  LD A+  F  K+ C    P + T+ ILI 
Sbjct: 44  LEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRGKMWC---SPTAFTYCILIH 100

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+  R+D+A  +  +M++K    +   Y+CLI G  K   + +A +V + M E +  P
Sbjct: 101 GLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVP 160

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           ++    +            EA +L + M  +G+ PD +  + L
Sbjct: 161 DVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNAL 203



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A +L  ++  +   PD   YN +I G C + ++D A  + + +      P+ IT+T
Sbjct: 107 RIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYT 166

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C+   +D+A  +  KM E G   + V Y+ L++G  K   ++    + EEM E 
Sbjct: 167 SLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEA 226

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              P+             +G+  EA ++ + M+     PD +  ++L D
Sbjct: 227 GREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMD 275



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD  +Y++++ G CS  +++EA ++ + +T     P S  + ++I   C   R D+A
Sbjct: 466 GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEA 525

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             M   M E+G + N+ TYS LI+G  K++ ++ A +V + M E    P++A        
Sbjct: 526 LKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDG 585

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                +   A Q + +M  +G  PD L  + L     Q SG+ E  I
Sbjct: 586 FCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQ-SGNVEKAI 631



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 58/103 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A+ +   + ++G  PD+ TY ++I G+C +N++D A Q F+ +     +P+
Sbjct: 551 LCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPD 610

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            + + ILI  FC+ G ++ A  +   MLEKG   +  TY  L+
Sbjct: 611 KLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query: 8   LDAALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           LD AL  F     RG     P   TY  +I G C   R+DEA QL +++      P++  
Sbjct: 75  LDRALSHF-----RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAV 129

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI   CK G++D A  +   MLE+    +V+TY+ LI G  ++  +  A  + E+M 
Sbjct: 130 YNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMK 189

Query: 125 ENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           E+ ++P+               +  E  +L + M+  G  PD    +T+     +S   +
Sbjct: 190 ESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYE 249

Query: 173 E 173
           E
Sbjct: 250 E 250



 Score = 43.5 bits (101), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 38/68 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA + F  + D G EPD + YN +I G+C    +++A+++ + +      P++ T+  
Sbjct: 592 MDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFS 651

Query: 68  LIDAFCKE 75
           L+ +   E
Sbjct: 652 LMRSLTTE 659


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+++ Y T++ GYC + R+DE + LF ++    +KP++I ++I
Sbjct: 553 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSI 612

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   + GR   A M F +M E G   ++ TY+ ++ G FK++    A  +++E+   N
Sbjct: 613 IIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMN 672

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI              R  EA  L+ S+ R+ ++P  +  S +
Sbjct: 673 VKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIM 718



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 75/122 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + GL PD + YN ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 521 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVN 580

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML++G K + + YS +IDG F++     A   + EM E+ I+ 
Sbjct: 581 GYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAM 640

Query: 131 NI 132
           +I
Sbjct: 641 DI 642



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++ F Q+ D+G+ PD   YN +I G+C+   L +A +L  ++    +  + + F+ 
Sbjct: 448 MDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 507

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK GR+ DA  +F   +  G   + V Y+ L+DGY     M+ A  V++ M    
Sbjct: 508 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 567

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I PN+             GR  E + L+  ML+ GI P  +L S + D
Sbjct: 568 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIID 615



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C +D    LF  +   G+ PD  T+N +I  Y +   LD+A+ +F ++    +KP+ +
Sbjct: 375 KGCLVDMT-DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 433

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I A C+ G+MDDA   F++M+++G   +   Y+CLI G+    ++  A ++  E+
Sbjct: 434 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 493

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N +  +I             GR  +A  ++D  +  G+ PD ++ + L D
Sbjct: 494 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 545



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G+  DI+ +++II   C L R+ +A  +F+    V L P+++ + +L+D
Sbjct: 486 AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMD 545

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+M+ A  +F  M+  G + NVV Y  L++GY K   +     ++ EM +  I P
Sbjct: 546 GYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKP 605

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +             AGR   A   +  M  +GI  D
Sbjct: 606 STILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMD 641



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 9/128 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFT 66
           AL  FGQL   GL  +II  N ++ G+C   R DEA+ +      +L CV   P+  +++
Sbjct: 133 ALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCV---PDVFSYS 189

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           IL+ + C +G+   A  +   M E G     NVV Y+ +IDG+FK  ++  A D+++EM 
Sbjct: 190 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV 249

Query: 125 ENNISPNI 132
           +  I P++
Sbjct: 250 QRGIPPDL 257



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  ++ A  LF ++  RG+ PD++TYN+++   C    +D+A     ++   ++ PN
Sbjct: 232 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 291

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  +   G+  +A  +F +M       +VVT S L+    K   +K A DV++
Sbjct: 292 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 351

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M     +P++             G   +   L+D ML +GI PD
Sbjct: 352 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 396



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A     Q+ ++ + P+  TYN +I GY S  +  EAV++F+++    + P+
Sbjct: 267 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T ++L+ + CK G++ +A  +F  M  KG   +V +Y+ +++GY     +    D+++
Sbjct: 327 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD 386

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  + I+P+              G   +AM +++ M  +G+ PD +   T+
Sbjct: 387 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 438



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ YNT+I G+     +++A  LF+++    + P+ +T+  ++ A CK   MD A   
Sbjct: 220 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 279

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M+ K    N  TY+ LI GY  +   K A  V++EM  ++I P++            
Sbjct: 280 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G+  EA  ++D+M   G  PD
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPD 361



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +F  +  +G  PD+ +YN ++ GY +   L +   LF+ +    + P+
Sbjct: 337 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 396

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF +LI A+   G +D A ++F++M + G K +VVTY  +I    +   M  A + + 
Sbjct: 397 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 456

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +  ++P+              G   +A +L   ++ NG+  D +  S++
Sbjct: 457 QMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 508



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  DI TYN ++ G       DEA+ LF++L  + +K N IT   +ID   +
Sbjct: 630 FHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQ 689

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +       +VVTYS +I    K   ++ A D++  M      PN
Sbjct: 690 TRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 746



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ +IIT NT+I G     R++EA  LF  ++  +L P+
Sbjct: 652 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 711

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++I+I    KEG +++A  MFS M   G + N    + ++    K   +  A     
Sbjct: 712 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 771

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 772 KIDERNFS 779



 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P S T+ IL+D   +  R + A   F ++L  G + N++  + L++G+ +++    A 
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 118 DV 119
           D+
Sbjct: 170 DI 171


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 97/175 (55%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ++ K  +L+ A+ L  Q+ +RGL+ + +T+  +I G+C    LD+A+     +   ++KP
Sbjct: 299 VMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKP 358

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + +  LI+ +C  GRMD+A  +  +M  KG K +VVTYS +I  Y K+ +  SAF++ 
Sbjct: 359 SVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELN 418

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++M E  + P+               R ++A  L+ +M++ G+ PD    ++L D
Sbjct: 419 QQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 473



 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A K+F ++   GL PD ++YNT++ GYC      EA+ +F ++T   + P+ +
Sbjct: 232 KAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV 291

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI   CK G ++ A  +  +M E+G + N VT++ LIDG+ K   +  A      M
Sbjct: 292 TFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 351

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  I P++             GR  EA +L   M   G+ PD +  ST+
Sbjct: 352 RQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTI 401



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           + + +  L +A + F  +   G+ P++ TYN +I   C      EA+ +   +      P
Sbjct: 124 LALSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGP 183

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+  L+ AF + G +D A  +   ML+ G K N+VT++ +++G  K+  M+ A  V+
Sbjct: 184 NVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 243

Query: 121 EEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM    ++P+             AG   EA+ ++  M + GIMPD +  ++L
Sbjct: 244 DEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 296



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 84/147 (57%), Gaps = 12/147 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++  +GL+PD++TY+TII  YC       A +L +++    + P++IT++ 
Sbjct: 376 MDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSS 435

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+E R+ DA ++F  M++ G + +  TY+ LIDG+ K  N++ A  ++++M +  
Sbjct: 436 LIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAG 495

Query: 128 ISPNI------------AGRPTEAMQL 142
           + P++            + R  EA QL
Sbjct: 496 VLPDVVTYSVLINGLSKSARAMEAQQL 522



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 93/182 (51%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD AL     +    ++P ++ YN +I GYC + R+DEA +L  ++    LKP+ +
Sbjct: 337 KKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVV 396

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ +I A+CK      A  +  +MLEKG   + +TYS LI    + + +  A  +++ M
Sbjct: 397 TYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNM 456

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + P+              G    A+ L+D M++ G++PD +  S L +   +S+ +
Sbjct: 457 IKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARA 516

Query: 172 QE 173
            E
Sbjct: 517 ME 518



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C   +A +L  Q+ ++G+ PD ITY+++I   C   RL +A  LF+ +  + L+P+  
Sbjct: 407 KNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEF 466

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----FDV 119
           T+T LID  CKEG ++ A  +  KM++ G   +VVTYS LI+G  KS     A    F +
Sbjct: 467 TYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 526

Query: 120 YEE 122
           Y E
Sbjct: 527 YHE 529



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H   AL +   +   G  P+++TYNT++  +     +D A +L   +    LKPN +TF 
Sbjct: 165 HRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFN 224

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +++  CK G+M+DA  +F +M+ +G   + V+Y+ L+ GY K+     A  V+ EM + 
Sbjct: 225 SMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK 284

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P++            AG    A+ L   M   G+  + +  + L D
Sbjct: 285 GIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALID 333



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 19/164 (11%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +++ AL L  ++   G+ PD++TY+ +I G     R  EA QL  KL   +  P + 
Sbjct: 477 KEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANT 536

Query: 64  TF---------------TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            +                 L+  FC +G M++A  ++  ML++    +   YS LI G+ 
Sbjct: 537 KYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHC 596

Query: 109 KSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIM 152
           ++ N+  A   +++M +   +PN     T  + L   +  NG++
Sbjct: 597 RAGNVMKALSFHKQMLQRGFAPN----STSTISLIRGLFENGMV 636



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 27/181 (14%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +E  L  A  LF  +   GL+PD  TY ++I G+C    ++ A+ L +K+    + P
Sbjct: 439 VLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLP 498

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGP---------------KANVVTYSCLID 105
           + +T+++LI+   K  R  +A  +  K+  + P               KA + +   L+ 
Sbjct: 499 DVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLK 558

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           G+     M  A  VY+ M + N + +             AG   +A+  +  ML+ G  P
Sbjct: 559 GFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAP 618

Query: 154 D 154
           +
Sbjct: 619 N 619



 Score = 42.7 bits (99), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 55/124 (44%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A K++  + DR    D   Y+ +I G+C    + +A+   +++      PNS +   
Sbjct: 566 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTIS 625

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    + G + +A  +  ++L     A+      LID      N+ +  DV   M ++ 
Sbjct: 626 LIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDG 685

Query: 128 ISPN 131
           + P+
Sbjct: 686 LLPS 689


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 50/206 (24%)

Query: 6   CHLDAALKLFG---QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C   A  + FG    + D GL PD  TY  +I G C   R +EA  L ++++C +LKPN 
Sbjct: 163 CRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNV 222

Query: 63  ITFTILIDAF-----------------------------------CKEGRMDDATMMFSK 87
           + +  LID F                                   CK G+MD A+++  +
Sbjct: 223 VVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQ 282

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M+    + + +TY+ +I+G+F+  N K AF +  EM    ISPN+            +G 
Sbjct: 283 MVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGE 342

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTL 161
           P +A  L + M   G+ P+  + + L
Sbjct: 343 PEKASDLLEEMTTKGLKPNAFVYAPL 368



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 13/177 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  L  ++T +GL+P+   Y  +I GYC    +  A ++F+K+T V + P+   +  L
Sbjct: 344 EKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSL 403

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    K GR++++T  F++M E+G   N  TYS LI GY K+ +++SA  + + M +  +
Sbjct: 404 IFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL 463

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN             +    +    + SML  G+M D  +   L  +NL SSG+ E
Sbjct: 464 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI-HNLSSSGNME 519



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  L  Q+      PD ITYN II G+   +   +A +L  ++    + PN
Sbjct: 267 LCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPN 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I+I   C+ G  + A+ +  +M  KG K N   Y+ LI GY +  N+  A ++++
Sbjct: 327 VYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD 386

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD-----GLLLSTLADY 164
           +M + N+ P++             GR  E+ + +  M   G++P+     GL+   L + 
Sbjct: 387 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNG 446

Query: 165 NLQSS 169
           +L+S+
Sbjct: 447 DLESA 451



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 12/156 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++AA ++  ++   G  PD+  Y+++I G C     ++A  + ++++   + PN + + 
Sbjct: 517 NMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYN 576

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK G +  A  +F+ +L KG   N VTY+ LIDG  K  ++ +AF +Y EM   
Sbjct: 577 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 636

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNG 150
            I+P+             AG   +AM L + M   G
Sbjct: 637 GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG 672



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++  A ++F ++T   + PD+  YN++I G   + R++E+ + F ++    L PN  
Sbjct: 374 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 433

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI  + K G ++ A  +  +ML+ G K N V Y  L++ YFKS +++     ++ M
Sbjct: 434 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 493

Query: 124 CENNI------------SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +            + + +G    A ++   + +NG +PD  + S+L
Sbjct: 494 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSL 543



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ + K F Q+ +RGL P+  TY+ +I GY     L+ A QL +++    LKPN
Sbjct: 407 LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 466

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L++++ K   ++  +  F  ML++G   +   Y  LI     S NM++AF V  
Sbjct: 467 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 526

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+ +N   P++                 +A  + D M + G+ P+ +  + L D
Sbjct: 527 EIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALID 580



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  +  +++ +G++P+I+ YN +I G C    +  A  +F  +    L PN
Sbjct: 547 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 606

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LID  CK G + +A  ++++ML  G   +   YS L  G   + +++ A  + E
Sbjct: 607 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 666

Query: 122 EM---------CENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           EM           NN+       G+  E ++L   ++  G++P+ L +  +    L  +G
Sbjct: 667 EMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIIS-GLSEAG 725

Query: 171 --SQEHCI 176
             S+ H I
Sbjct: 726 KLSEVHTI 733



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 12/159 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  + D+G+  D   Y  +I    S   ++ A ++  ++      P+   ++ LI   CK
Sbjct: 490 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCK 549

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
               + A  +  +M +KG   N+V Y+ LIDG  KS ++  A +V+  +    + PN   
Sbjct: 550 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 609

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      G  + A  LY+ ML  GI PD  + S L
Sbjct: 610 YTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 648



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A ++   + DRGL P I   N ++      + +    ++ E +    + P+  
Sbjct: 59  KSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVY 118

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI+A+CK    D A  +  +M E+G   N VTY+ LI G  +S  ++ AF   ++M
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + P+       I G     R  EA  L D M    + P+ ++ + L D  ++   +
Sbjct: 179 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 238

Query: 172 QE 173
            E
Sbjct: 239 DE 240



 Score = 43.5 bits (101), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 19/150 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +   LKL   +  RGL P+ +T   II G     +L E   +F +L     +  + 
Sbjct: 688 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 747

Query: 64  TFTIL------------------IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            F+ L                  I   CKEG +D A M+   ++ K       +Y  ++D
Sbjct: 748 HFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVD 807

Query: 106 GYFKSQNMKSAFDVYEEM-CENNISPNIAG 134
              +   +  A ++ +EM    N+ P +  
Sbjct: 808 NLCRKGKLSEALNLLKEMDKRGNLQPTLVA 837



 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ L  ++  RG    I ++N ++ G+C   ++ E ++L   +    L PN++T   
Sbjct: 658 LEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIEN 716

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
           +I    + G++ +   +F ++ +K  ++    +S L
Sbjct: 717 IISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL 752


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 14/178 (7%)

Query: 12  LKLFGQLTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           + ++ +L D   E P+IITY  ++ G C  NR++EA +L + ++    +PN I +  LID
Sbjct: 593 IDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALID 652

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK G++++A  +F KM E+G   N+ TYS LI+  FK + +     V  +M EN+ +P
Sbjct: 653 GFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTP 712

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           N+             G+  EA +L   M   G  P+ +  + + D      G  E C+
Sbjct: 713 NVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMID-GFGKIGKIEQCL 769



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 34/187 (18%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  LF ++   G+ P + TY  +I  +C    + +A   F+++      PN +T+T 
Sbjct: 469 VEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTS 528

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM---- 123
           LI A+ K  ++ DA  +F  ML +G K NVVTY+ LIDG+ K+  +  A  +Y  M    
Sbjct: 529 LIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDI 588

Query: 124 ---------------CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
                          CE   +PNI            A R  EA +L D+M  NG  P+ +
Sbjct: 589 ESSDIDMYFKLDDNDCE---TPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQI 645

Query: 157 LLSTLAD 163
           +   L D
Sbjct: 646 VYDALID 652



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A ++  ++  +G  PD  TY+ +I   C  +++++A  LFE++    + P+  T+TI
Sbjct: 434 FDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTI 493

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G +  A   F +ML      NVVTY+ LI  Y K++ +  A  ++E M    
Sbjct: 494 LIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEG 553

Query: 128 ISPNI------------AGRPTEAMQLYDSM 146
             PN+            AG+  +A Q+Y  M
Sbjct: 554 SKPNVVTYTALIDGHCKAGQIDKACQIYARM 584



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 73/129 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+ A ++F ++++RG  P++ TY+++I       RLD  +++  K+      PN +
Sbjct: 656 KTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVV 715

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +ID  CK G+ ++A  +  KM E G   NV+TY+ +IDG+ K   ++   ++Y +M
Sbjct: 716 IYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDM 775

Query: 124 CENNISPNI 132
           C    +PN 
Sbjct: 776 CSKGCAPNF 784



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +L   ++  G EP+ I Y+ +I G+C   +L+ A ++F K++     PN
Sbjct: 619 LCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPN 678

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LI++  KE R+D    + SKMLE     NVV Y+ +IDG  K    + A+ +  
Sbjct: 679 LYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLML 738

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M E    PN+             G+  + ++LY  M   G  P+ +    L ++
Sbjct: 739 KMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINH 793



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 64/122 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD  LK+  ++ +    P+++ Y  +I G C + + +EA +L  K+  V   PN
Sbjct: 689 LFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPN 748

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+T +ID F K G+++    ++  M  KG   N +TY  LI+    +  +  A  + +
Sbjct: 749 VITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLD 808

Query: 122 EM 123
           EM
Sbjct: 809 EM 810



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 88/180 (48%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A K + ++ D G+  + +  +      C   + D+A ++  ++      P+  T++ 
Sbjct: 399 LELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSK 458

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   +++ A ++F +M + G   +V TY+ LID + K+  ++ A + ++EM  +N
Sbjct: 459 VIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDN 518

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            A +  +A +L++ ML  G  P+ +  + L D + ++    + C
Sbjct: 519 CTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKAC 578



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++ + G  P++ITY  +I G+  + ++++ ++L+  +      PN IT+ +L
Sbjct: 731 EEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVL 790

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +D+A  +  +M +     ++ +Y  +I+G+  ++   ++  + +E+ EN  
Sbjct: 791 INHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGF--NREFITSIGLLDELSENES 848

Query: 129 SP 130
            P
Sbjct: 849 VP 850



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 55/106 (51%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD + YN ++ G C  +   EA+ + +++  +   PN +T+ IL+     +G++     +
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRI 329

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            S M+ +G   N   ++ L+  Y KS++   A+ ++++M +    P
Sbjct: 330 LSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQP 375



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 49/187 (26%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------------------- 46
           ++  L+L+  +  +G  P+ ITY  +I   CS   LDEA                     
Sbjct: 765 IEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRK 824

Query: 47  ------------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94
                       + L ++L+  +  P    + ILID F K GR++ A  +  + +   P 
Sbjct: 825 IIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEE-ISSSPS 883

Query: 95  ---ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA 139
              AN   Y+ LI+    +  +  AF++Y  M   N+ P ++            G+  EA
Sbjct: 884 LAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEA 943

Query: 140 MQLYDSM 146
           +QL DS+
Sbjct: 944 LQLSDSI 950



 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
            LI++C      + AL+  G+L D G +    TYN +I  +   ++LD A  +  +++  
Sbjct: 175 FLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNS 234

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             + +  T      + CK GR  DA  +  K  E  P  + V Y+ ++ G  ++   + A
Sbjct: 235 GFRMDGCTLGCFAYSLCKAGRCGDALSLLEKE-EFVP--DTVFYNRMVSGLCEASLFQEA 291

Query: 117 FDVYEEMCENNISPNIA 133
            D+ + M   +  PN+ 
Sbjct: 292 MDILDRMRSISCIPNVV 308



 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 18/148 (12%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++TY  ++ G     +L    ++   +      PN   F  L+ A+CK      A  +
Sbjct: 305 PNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKL 364

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------AFDVYEEMCENNISPNI------ 132
           F KM++ G +   + Y+  I     ++ +        A   Y EM +  +  N       
Sbjct: 365 FKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNF 424

Query: 133 ------AGRPTEAMQLYDSMLRNGIMPD 154
                 AG+  +A ++   M+  G +PD
Sbjct: 425 ARCLCGAGKFDKAFEIICEMMSKGFVPD 452



 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  +  ++++ G   D  T        C   R  +A+ L EK    +  P+++ +  
Sbjct: 221 LDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEK---EEFVPDTVFYNR 277

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           ++   C+     +A  +  +M       NVVTY  L+ G
Sbjct: 278 MVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSG 316


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF  +++ G EPD  TY T+I G C    + EA +L +++      P+ +T+T 
Sbjct: 201 MDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTS 260

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C+   +D+A  +   M +K  + NV TYS L+DG+ K+ +   A D+ E M +  
Sbjct: 261 IIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKR 320

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + PN+             G+  EA++++D M   G  PD  L   + +
Sbjct: 321 LRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVN 368



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A++L   + D+ +EP++ TY++++ G+C       A  + E +   +L+PN I+++
Sbjct: 270 NVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYS 329

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L++  C EG++++A  +F +M  +G K +   Y  +++        + A +  +EM   
Sbjct: 330 TLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLC 389

Query: 127 NISPN--------------IAGRPT-----EAMQLYDSMLRNGI 151
            I PN              I G  T      A QLY S+L  GI
Sbjct: 390 GIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGI 433



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 83/179 (46%), Gaps = 19/179 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  H   A  +   +  + L P++I+Y+T++ G C+  +++EA+++F+++     KP++ 
Sbjct: 302 KTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAG 361

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC-------LIDGYFKSQNMKSA 116
            +  +++  C   R  +A     +M+  G K N +T+S        +I G     N   A
Sbjct: 362 LYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRA 421

Query: 117 FDVYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           F +Y  +    IS  +    +            +  ++ D M+ NG +P G + ST+ +
Sbjct: 422 FQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVN 480



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 13/166 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++++F ++ D   +P   +Y +++      N+L  A + +  +  + + P   +  +LI 
Sbjct: 133 SIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIK 192

Query: 71  AFCK-EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           AFCK  G MD A  +F  M   G + +  TY  LI+G  + +++  A ++ +EM     S
Sbjct: 193 AFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCS 252

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P++    +            EAM+L + M    I P+    S+L D
Sbjct: 253 PSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMD 298



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 7/136 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  ++ AL++F ++  +G +PD   Y  I+   C ++R  EA    +++    +KPN
Sbjct: 335 LCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPN 394

Query: 62  SITFTI-------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            IT+++       +I   C     + A  ++  +L +G    V T++ L+  +   +++ 
Sbjct: 395 RITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLP 454

Query: 115 SAFDVYEEMCENNISP 130
               + +EM  N   P
Sbjct: 455 KTSRILDEMVINGCIP 470


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 4/141 (2%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             L+ +L  F QLT+ GLEPD+ITYN +I G     RL+EAV LF  +    + PN  T+ 
Sbjct: 966  RLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYN 1025

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             LI    KEG+  +A  M+ ++L+ G K NV TY+ LI GY  S +  +AF  Y +M   
Sbjct: 1026 SLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVG 1085

Query: 127  NISPNIAGRPTEAMQLYDSML 147
               PN     +  MQL + +L
Sbjct: 1086 GCPPN----SSTYMQLPNQLL 1102



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K+  ++ A  LF ++ D G +P+   YN ++ GY      ++  +LF+ +    + P+
Sbjct: 891  LLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPD 950

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++T+LI A C  GR++D+   F ++ E G + +++TY+ LI G  +S  ++ A  ++ 
Sbjct: 951  IKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFN 1010

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +M ++ I+PN+             G+  EA ++Y+ +L+NG  P+
Sbjct: 1011 DMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPN 1055



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 13   KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
            +LF  + D+G+ PDI +Y  +I   C+  RL++++  F +LT + L+P+ IT+ +LI   
Sbjct: 937  ELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGL 996

Query: 73   CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN- 131
             + GR+++A  +F+ M + G   N+ TY+ LI    K      A  +YEE+ +N   PN 
Sbjct: 997  GRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNV 1056

Query: 132  -----------IAGRPTEAMQLYDSMLRNGIMPD 154
                       ++G    A   Y  M+  G  P+
Sbjct: 1057 FTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPN 1090



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   ++  LK+  ++  +G E   +TYNTII G      L EA+ L+ KL      P   
Sbjct: 823  KSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPC 882

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+  L+D   K+G+++DA  +F +ML+ G K N   Y+ L++GY  + N +   ++++ M
Sbjct: 883  TYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNM 942

Query: 124  CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             +  I+P+I            AGR  +++  +  +   G+ PD L+   L  + L  SG 
Sbjct: 943  VDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPD-LITYNLLIHGLGRSGR 1001

Query: 172  QEHCI 176
             E  +
Sbjct: 1002 LEEAV 1006



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 48/217 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +    + A K+  ++ D G +PD++T   +I   C   R+ +A  +F K+     KP
Sbjct: 260 VLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKP 319

Query: 61  NSIT-----------------------------------FTILIDAFCKEGRMDDATMMF 85
           + +T                                   +T ++DA C+ GR+D+A+ +F
Sbjct: 320 DRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVF 379

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IA 133
            +M +KG +    +Y+ LI G+ K+  +  A +++  M  +  +PN             +
Sbjct: 380 DQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKS 439

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           G   +A++ Y+ M   GI+PD ++      Y+L  SG
Sbjct: 440 GESLKAIKRYELMKSKGIVPD-VVAGNAVLYSLAKSG 475



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  +F Q+  +G+EP   +YN++I G+   +RL+ A++LF  +      PN  T+ 
Sbjct: 371 RVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYV 430

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--- 123
           + I+ + K G    A   +  M  KG   +VV  + ++    KS  +  A  V+ E+   
Sbjct: 431 LFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSI 490

Query: 124 --CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             C +NI+  +       A    EAM+++  M+    +PD L +++L D
Sbjct: 491 GVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLID 539



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 7/166 (4%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A K+F +L +  L+P   TYNT++ G     ++ E + L E++      PN
Sbjct: 541 LYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPN 600

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  ++D  CK G ++ A  M   M  KG   ++ +Y+  + G  K   +  AF ++ 
Sbjct: 601 LITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFC 660

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           +M +  ++P+     T    +  S ++NG+M +   L TL +Y LQ
Sbjct: 661 QM-KKVLAPDY----TTLCTILPSFVKNGLMNEA--LHTLKEYILQ 699



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++  + L  ++ D G++P++ +Y   I       R +EA ++ +K+     KP+ +T T+
Sbjct: 232 VETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTV 291

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+ DA  +F KM     K + VTY  L+D    + + +S  +++  M  + 
Sbjct: 292 LIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADG 351

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            + N+             GR  EA  ++D M + GI P
Sbjct: 352 YNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEP 389



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+K +  +  +G+ PD++  N ++       RL  A ++F +L  + + P++IT+T++I 
Sbjct: 445 AIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIK 504

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K    D+A  +FS+M+E     +V+  + LID  +K+     A+ ++ E+ E N+ P
Sbjct: 505 CCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDP 564

Query: 131 ------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                          G+  E M L + M  N   P+ +  +T+ D
Sbjct: 565 TDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLD 609



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           + ++++  +   G   +++ Y  ++   C + R+DEA  +F+++    ++P   ++  LI
Sbjct: 339 SVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLI 398

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             F K  R++ A  +F+ M   GP  N  TY   I+ Y KS     A   YE M    I 
Sbjct: 399 SGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIV 458

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           P++            +GR   A +++  +   G+ PD +
Sbjct: 459 PDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNI 497



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 5/155 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  +    G+     +YN +ICG    N +D A  LF ++  +   P+  T+ +++D
Sbjct: 760 AHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILD 819

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K  R++D   +  +M  KG ++  VTY+ +I G  KS+ +  A D+Y ++     SP
Sbjct: 820 AMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSP 879

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADY 164
                P     L D +L++G + D   L   + DY
Sbjct: 880 T----PCTYGPLLDGLLKDGKIEDAEDLFDEMLDY 910



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F +L   G+ PD ITY  +I      +  DEA+++F ++   +  P+
Sbjct: 471 LAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPD 530

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    LID   K GR ++A  +F ++ E        TY+ L+ G  +   +K    + E
Sbjct: 531 VLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLE 590

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM  N+  PN+             G    A+ +  +M   G MPD      L+ YN    
Sbjct: 591 EMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPD------LSSYNTALH 644

Query: 170 G 170
           G
Sbjct: 645 G 645



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 2/128 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL +   +T +G  PD+ +YNT + G    +RL EA ++F ++  V L P+
Sbjct: 611 LCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV-LAPD 669

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK-MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             T   ++ +F K G M++A     + +L+ G KA+  ++  L++G  K   M+ + +  
Sbjct: 670 YTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFA 729

Query: 121 EEMCENNI 128
           E +  + I
Sbjct: 730 ENIALSRI 737



 Score = 42.7 bits (99), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 9/127 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYC-----SLNRLDEAVQLFEKLTCVQLKPNSITF 65
           AL+LF  +     +P I+ + T  C Y      +  R+ +  Q+F+ +    +K N  TF
Sbjct: 95  ALQLFKSVAQ---QPRIV-HTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTF 150

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +  +   EG +  A +    M E G   N  TY+ LI    KS   + A +VY+ M  
Sbjct: 151 LTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMAT 210

Query: 126 NNISPNI 132
           + I P++
Sbjct: 211 DGIVPSV 217



 Score = 38.9 bits (89), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L KE     A K++ +L   G +P++ TYN +I GY      D A   + ++      PN
Sbjct: 1031 LGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPN 1090

Query: 62   SITF 65
            S T+
Sbjct: 1091 SSTY 1094


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K C       L  ++ D  + PD+ T NT++   C    + EA  + + +    ++PN
Sbjct: 255 LCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN 314

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  C    +D A  +F  M+ K   ANV++Y+ LI+GY K Q++  A  ++E
Sbjct: 315 VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFE 374

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    ++PN              GR  +A+ L+  M+  G +PD +   TL+DY
Sbjct: 375 EMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 429



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++   G +P+++TY T+I G C +     A++L   +     +PN + 
Sbjct: 153 EGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVV 212

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F+ LID+ CK+ ++ +A  +FS+M+ KG   N+VTY+ LI G  K    K    +  EM 
Sbjct: 213 FSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV 272

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ I P++             G   EA  + D M+  G+ P+ +  + L D
Sbjct: 273 DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMD 323



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 5/161 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +    ++I+YNT+I GYC +  +D+A+ LFE+++  +L PN++T+  
Sbjct: 331 VDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 390

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+ DA  +F +M+ +G   ++VTY  L D   K++++  A  + + +  +N
Sbjct: 391 LIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN 450

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
             P+I    T    + D M R G + D   L S L+   LQ
Sbjct: 451 WDPDIQIYTT----ILDGMCRAGELEDARDLFSNLSSKGLQ 487



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K  H    L L  Q+   G+ PD+ T   +I   C LNR+D A     K+  +  +P+
Sbjct: 80  IAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPD 139

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + TFT LI   C EG++ +A  +F KM+ +G + NVVTY  LI+G  K  N  +A  +  
Sbjct: 140 ATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLR 199

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + N  PN+              + TEA  ++  M+  GI P+
Sbjct: 200 SMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPN 244



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 19/189 (10%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++  RG  PD++TY T+    C    LD+A+ L + +      P+ 
Sbjct: 396 CHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDI 455

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +T ++D  C+ G ++DA  +FS +  KG + NV TY+ +I G  K   +  A  ++ E
Sbjct: 456 QIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSE 515

Query: 123 MCENNISPNIAG---------RPTEAM---QLYDSMLRNGIMPD----GLLLSTLADYNL 166
           M +N  SPN            R  EA+   +L + ML  G   D     LL+  L+D  L
Sbjct: 516 MNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGL 575

Query: 167 QSSGSQEHC 175
             S  Q  C
Sbjct: 576 DQSVKQILC 584



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ L   +     +PDI  Y TI+ G C    L++A  LF  L+   L+PN
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 489

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I   CK+G + +A+ +FS+M + G   N  TY+ +  G+ ++       ++ E
Sbjct: 490 VWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLE 549

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 550 EMLARGFSVDVS 561



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF +++ + L P+ +TYNT+I G C + RL +A+ LF ++      P+ +T+  
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L D  CK   +D A  +   +       ++  Y+ ++DG  ++  ++ A D++  +    
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + PN+             G   EA +L+  M +NG  P+         YNL + G
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND------CTYNLITRG 534



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 47/182 (25%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI------------------------- 63
           ++NT        N LDEA+  F ++   Q  P+++                         
Sbjct: 37  SHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM 96

Query: 64  ----------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
                     T  I+I++ C   R+D A    +K+L+ G + +  T++ LI G      +
Sbjct: 97  DSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKI 156

Query: 114 KSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             A  ++++M      PN+             G  + A++L  SM +    P+ ++ STL
Sbjct: 157 GEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTL 216

Query: 162 AD 163
            D
Sbjct: 217 ID 218


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L   + +RG+ P++++++ +I  YC      EA +LF+ +      P+ +T+   
Sbjct: 419 EEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAF 478

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ +CK+G+M++A  + ++M E+G   +  TY+ LIDG   S N+  A +++ EM +  +
Sbjct: 479 IERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGL 538

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + N+             GR  EA +LYD M + GI+PD  + S+L
Sbjct: 539 NRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSL 583



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   ++ A KLF ++  +G+EPD+  Y +II   C    +  A  LF+++T  +L PN+ 
Sbjct: 274 RSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAY 333

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS---------QNM- 113
           T+  LI+  CK G M  A MM + M  KG   N V ++ L+DGY K          QN+ 
Sbjct: 334 TYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIM 393

Query: 114 -KSAFDVYEEMCENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  F++    C N I+     + R  EA +L  +M   G+ P+ +  S L D
Sbjct: 394 QQKGFEIDAFTC-NIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILID 445



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 70/128 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   A +LF  +  +G  P ++TYN  I  YC   +++EA +L  ++    L P++ 
Sbjct: 449 KEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTY 508

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID     G +D A  +F++M + G   NVVTY+ +I G  K      AF +Y+EM
Sbjct: 509 TYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEM 568

Query: 124 CENNISPN 131
            +  I P+
Sbjct: 569 NKEGIVPD 576



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   + AA  +   +  +G++ + + +NT++ GYC    +DEA++L   +     + ++ 
Sbjct: 344 KAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAF 403

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  I+   FC+  R ++A  +   M E+G   NVV++S LID Y K QN   A  +++ M
Sbjct: 404 TCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVM 463

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +   +P++             G+  EA +L + M   G+MPD    ++L D   ++SG+
Sbjct: 464 EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLID-GERASGN 522

Query: 172 QEHCI 176
            +  +
Sbjct: 523 VDRAL 527



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 18/177 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR---LDEAVQLFEKLTCVQL 58
           L K+  +  A  L  +L  +G +P +ITYNT++ GY  +     ++E + L EK     +
Sbjct: 202 LCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNV---V 258

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
             N  T+T+LI+ + +  ++++A  +F +ML+KG + +V  Y+ +I+   K  NMK AF 
Sbjct: 259 DYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFV 318

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +++EM E  + PN             AG    A  + + M   G+  + ++ +TL D
Sbjct: 319 LFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMD 375



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 61/106 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A KL  ++ +RGL PD  TY ++I G  +   +D A++LF ++  + L  N +
Sbjct: 484 KKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV 543

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           T+T++I    K+GR D+A  ++ +M ++G   +   YS LI    K
Sbjct: 544 TYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 589



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++  ++   Q+ D G+E  + ++  ++ G C    +  A  L ++L C   KP+
Sbjct: 167 LKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPS 226

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L++ + +   +     + S M +     NV TY+ LI+ Y +S  ++ A  +++
Sbjct: 227 VITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFD 286

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  I P++             G    A  L+D M    ++P+      L
Sbjct: 287 EMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGAL 338



 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D AL+LF ++   GL  +++TY  II G     R DEA +L++++    + P+   ++
Sbjct: 522 NVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYS 581

Query: 67  ILIDAFCKEG 76
            LI +  K G
Sbjct: 582 SLIASLHKVG 591


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 12/178 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KEC    A  L  ++ DRG++P++I+Y+T+I     +  ++ ++ +F ++     +PN  
Sbjct: 256 KECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQ 315

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI  F   GR+ DA  +++ M+ +G   NVV Y+ LI G     NM  A  V+ +M
Sbjct: 316 TFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQM 375

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            +++I PN+            +G    A + ++ M+  G  P+ ++ + + D   Q S
Sbjct: 376 EKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMS 433



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 12/177 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L+  +   G+ P+++ YNT+I G CS   +DEA+ ++ ++    ++PN  T++ +I 
Sbjct: 333 AVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIY 392

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F K G +  A   ++KM+  G + NVV Y+C++D   +      AFD+ + M  +   P
Sbjct: 393 GFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPP 452

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +            AGR   AM + D M +   +P+    + L D   +++  +E C
Sbjct: 453 TVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREAC 509



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 18/181 (9%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KL  +++++G +PD ++Y T+I   C L  +D+A +L      ++ +P    +  
Sbjct: 195 VDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKAREL-----AMKFEPVVPVYNA 249

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CKE R  +A  + ++M+++G   NV++YS +I       N++ +  V+  M    
Sbjct: 250 LIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRG 309

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
             PN+             GR  +A+ L++ M+R G+ P+ +  +TL  + L S G+ +  
Sbjct: 310 CRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLI-HGLCSDGNMDEA 368

Query: 176 I 176
           I
Sbjct: 369 I 369



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 13/160 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
            EP +  YN +I G C   R  EA  L  ++    + PN I+++ +I      G ++ + 
Sbjct: 240 FEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSL 299

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +F +M  +G + NV T++ LI G+F    +  A  ++  M    +SPN+          
Sbjct: 300 AVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGL 359

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
              G   EA+ +++ M ++ I P+    ST+  Y    SG
Sbjct: 360 CSDGNMDEAISVWNQMEKDSIRPNVTTYSTII-YGFAKSG 398



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  + ++D A+ ++ Q+    + P++ TY+TII G+     L  A + + K+     +PN
Sbjct: 359 LCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPN 418

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T ++D  C+    D A  +   M+  G    V+T++  I G  ++  ++ A +V +
Sbjct: 419 VVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLD 478

Query: 122 EMCENNISPNI 132
           +M +    PNI
Sbjct: 479 QMEKYECLPNI 489



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L +A + + ++ + G  P+++ Y  ++   C ++  D+A  L + +      P  I
Sbjct: 396 KSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVI 455

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF   I   C+ GR++ A  +  +M +     N+ TY+ L+DG F++   + A  +  E+
Sbjct: 456 TFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIREL 515

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  +  +              G   + +QL   ML NGI  D + ++T  +
Sbjct: 516 EERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVN 567



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 30/159 (18%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +  LK+F ++ + G EP +  YN ++    S N       L+  +    L+PN  T+ +L
Sbjct: 126 EQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVL 185

Query: 69  IDAFCKEGRMDDATMMFSKMLEKG---------------------PKAN---------VV 98
           + A C+ G++D A  +  +M  KG                      KA          V 
Sbjct: 186 LKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVP 245

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
            Y+ LI G  K    K AFD+  EM +  + PN+    T
Sbjct: 246 VYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYST 284



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 3/125 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV-QLFEKLTCVQLKPNSITFTILI 69
           A  L  +L +R +E D +TYNTI+ G+ S N + + V QL  K+    +K ++IT    +
Sbjct: 508 ACGLIRELEERKVEFDCVTYNTIMYGF-SFNGMHQQVLQLLGKMLVNGIKLDTITVNTTV 566

Query: 70  DAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +A+CK G++  A  +   +  EK  +A+++T++ ++ G       + A     EM +  I
Sbjct: 567 NAYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGI 626

Query: 129 SPNIA 133
            PNIA
Sbjct: 627 FPNIA 631



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 19/182 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ A+ +  Q+      P+I TYN ++ G    N   EA  L  +L   +++ +
Sbjct: 464 LCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFD 523

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++  F   G       +  KML  G K + +T +  ++ Y K   +K+A  V +
Sbjct: 524 CVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLD 583

Query: 122 EM-CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            +  E     +I                 EA+     ML+ GI P+      +A +N+  
Sbjct: 584 NISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPN------IATWNVLV 637

Query: 169 SG 170
            G
Sbjct: 638 RG 639


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L   + +RG+ P++++++ +I  YC      EA +LF+ +      P+ +T+   
Sbjct: 415 EEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAF 474

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ +CK+G+M++A  + ++M E+G   +  TY+ LIDG   S N+  A +++ EM +  +
Sbjct: 475 IERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGL 534

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + N+             GR  EA +LYD M + GI+PD  + S+L
Sbjct: 535 NRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSL 579



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   ++ A KLF ++  +G+EPD+  Y +II   C    +  A  LF+++T  +L PN+ 
Sbjct: 270 RSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAY 329

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS---------QNM- 113
           T+  LI+  CK G M  A MM + M  KG   N V ++ L+DGY K          QN+ 
Sbjct: 330 TYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIM 389

Query: 114 -KSAFDVYEEMCENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  F++    C N I+     + R  EA +L  +M   G+ P+ +  S L D
Sbjct: 390 QQKGFEIDAFTC-NIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILID 441



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 70/128 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   A +LF  +  +G  P ++TYN  I  YC   +++EA +L  ++    L P++ 
Sbjct: 445 KEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTY 504

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID     G +D A  +F++M + G   NVVTY+ +I G  K      AF +Y+EM
Sbjct: 505 TYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEM 564

Query: 124 CENNISPN 131
            +  I P+
Sbjct: 565 NKEGIVPD 572



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   + AA  +   +  +G++ + + +NT++ GYC    +DEA++L   +     + ++ 
Sbjct: 340 KAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAF 399

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  I+   FC+  R ++A  +   M E+G   NVV++S LID Y K QN   A  +++ M
Sbjct: 400 TCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVM 459

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +   +P++             G+  EA +L + M   G+MPD    ++L D   ++SG+
Sbjct: 460 EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLID-GERASGN 518

Query: 172 QEHCI 176
            +  +
Sbjct: 519 VDRAL 523



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 18/177 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR---LDEAVQLFEKLTCVQL 58
           L K+  +  A  L  +L  +G +P +ITYNT++ GY  +     ++E + L EK     +
Sbjct: 198 LCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNV---V 254

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
             N  T+T+LI+ + +  ++++A  +F +ML+KG + +V  Y+ +I+   K  NMK AF 
Sbjct: 255 DYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFV 314

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +++EM E  + PN             AG    A  + + M   G+  + ++ +TL D
Sbjct: 315 LFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMD 371



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 61/106 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A KL  ++ +RGL PD  TY ++I G  +   +D A++LF ++  + L  N +
Sbjct: 480 KKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV 539

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           T+T++I    K+GR D+A  ++ +M ++G   +   YS LI    K
Sbjct: 540 TYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 585



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++  ++   Q+ D G+E  + ++  ++ G C    +  A  L ++L C   KP+
Sbjct: 163 LKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPS 222

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L++ + +   +     + S M +     NV TY+ LI+ Y +S  ++ A  +++
Sbjct: 223 VITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFD 282

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  I P++             G    A  L+D M    ++P+      L
Sbjct: 283 EMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGAL 334



 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D AL+LF ++   GL  +++TY  II G     R DEA +L++++    + P+   ++
Sbjct: 518 NVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYS 577

Query: 67  ILIDAFCKEG 76
            LI +  K G
Sbjct: 578 SLIASLHKVG 587


>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
          Length = 478

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 16/168 (9%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            H++ AL+LF  +     +PD+ +YNTII G C   RL EA+ +F ++    + P  +T+
Sbjct: 180 AHIEDALRLFRNIP----KPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTY 235

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I    +EG  DDA  +F +M  +G   N+VTYS LIDG  K     SA ++ + M +
Sbjct: 236 TTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIK 295

Query: 126 NNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
               PN+                +EAM++ D M   G  PD  L   L
Sbjct: 296 EKKLPNMITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKPDAGLFGKL 343



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS--LNRLDEAVQLFEKLTCVQLK 59
           L+   HL  A  L   +   G  P   TYN ++  +CS     +++A++LF  +     K
Sbjct: 139 LVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIP----K 194

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+  ++  +ID  C+ GR+ +A  MFS+M+ K     VVTY+ +I    +      A  +
Sbjct: 195 PDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKI 254

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + EM    +SPN+             GR T A++L D M++   +P+ +  S++ D
Sbjct: 255 FHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVID 310



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  AL +F ++  + + P ++TY T+I         D+A+++F ++    + PN
Sbjct: 207 LCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPN 266

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK GR   A  +  +M+++    N++TYS +IDG  K   +  A ++ +
Sbjct: 267 LVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEILD 326

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            M      P+             AGR  EA    D M+  GI P+ +  S  A  N
Sbjct: 327 RMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARIN 382


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K C       L  ++ D  + PD+ T NT++   C    + EA  + + +    ++PN
Sbjct: 255 LCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN 314

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  C    +D A  +F  M+ K   ANV++Y+ LI+GY K Q++  A  ++E
Sbjct: 315 VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFE 374

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    ++PN              GR  +A+ L+  M+  G +PD +   TL+DY
Sbjct: 375 EMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDY 429



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF ++   G +P+++TY T+I G C +     A++L   +     +PN + 
Sbjct: 153 EGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVV 212

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F+ LID+ CK+ ++ +A  +FS+M+ KG   N+VTY+ LI G  K    K    +  EM 
Sbjct: 213 FSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMV 272

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ I P++             G   EA  + D M+  G+ P+ +  + L D
Sbjct: 273 DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMD 323



 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 5/161 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +    ++I+YNT+I GYC +  +D+A+ LFE+++  +L PN++T+  
Sbjct: 331 VDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 390

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+ DA  +F +M+ +G   ++VTY  L D   K++++  A  + + +  +N
Sbjct: 391 LIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN 450

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
             P+I    T    + D M R G + D   L S L+   LQ
Sbjct: 451 WDPDIQIYTT----ILDGMCRAGELEDARDLFSNLSSKGLQ 487



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K  H    L L  Q+   G+ PD+ T   +I   C LNR+D A     K+  +  +P+
Sbjct: 80  IAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPD 139

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + TFT LI   C EG++ +A  +F KM+ +G + NVVTY  LI+G  K  N  +A  +  
Sbjct: 140 ATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLR 199

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M + N  PN+              + TEA  ++  M+  GI P+
Sbjct: 200 SMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPN 244



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 19/189 (10%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++  RG  PD++TY T+    C    LD+A+ L + +      P+ 
Sbjct: 396 CHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDI 455

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +T ++D  C+ G ++DA  +FS +  KG + NV TY+ +I G  K   +  A  ++ E
Sbjct: 456 QIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSE 515

Query: 123 MCENNISPN-------IAG--RPTEAM---QLYDSMLRNGIMPD----GLLLSTLADYNL 166
           M +N  SPN         G  R  EA+   +L + ML  G   D     LL+  L+D  L
Sbjct: 516 MNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGL 575

Query: 167 QSSGSQEHC 175
             S  Q  C
Sbjct: 576 DQSVKQILC 584



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 69/132 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ L   +     +PDI  Y TI+ G C    L++A  LF  L+   L+PN
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 489

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I   CK+G + +A+ +FS+M + G   N  TY+ +  G+ ++       ++ E
Sbjct: 490 VWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLE 549

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 550 EMLARGFSVDVS 561



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF +++ + L P+ +TYNT+I G C + RL +A+ LF ++      P+ +T+  
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L D  CK   +D A  +   +       ++  Y+ ++DG  ++  ++ A D++  +    
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           + PN+             G   EA +L+  M +NG  P+         YNL + G
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND------CTYNLITRG 534



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 47/182 (25%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI------------------------- 63
           ++NT        N LDEA+  F ++   Q  P+++                         
Sbjct: 37  SHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM 96

Query: 64  ----------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
                     T  I+I++ C   R+D A    +K+L+ G + +  T++ LI G      +
Sbjct: 97  DSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKI 156

Query: 114 KSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             A  ++++M      PN+             G  + A++L  SM +    P+ ++ STL
Sbjct: 157 GEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTL 216

Query: 162 AD 163
            D
Sbjct: 217 ID 218


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L   L+ + ++   GL+P++++Y+T++  +C    + +A++ +  +  V L PN  T+T 
Sbjct: 348 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 407

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CK G + DA  + ++ML+ G + NVVTY+ LIDG   ++ MK A +++ +M    
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN+A                 A++L + +   GI PD LL  T 
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++AA  LF ++  RGL PD +TYN++I G+  + RLD+ V  FE++  +  +P+ I
Sbjct: 274 KEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 333

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK G++      + +M   G K NVV+YS L+D + K   M+ A   Y +M
Sbjct: 334 TYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 393

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + PN              G  ++A +L + ML+ G+  + +  + L D
Sbjct: 394 RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALID 445



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K  ++D AL+L  +L  RG++PD++ Y T I G CSL +++ A  +  ++    +K N
Sbjct: 482 FVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKAN 541

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+ +T L+DA+ K G   +   +  +M E   +  VVT+  LIDG  K++ +  A D + 
Sbjct: 542 SLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFN 601

Query: 122 EMCEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            +  +  +  N A             +   A  L++ M++ G++PD    ++L D N + 
Sbjct: 602 RISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQ 661

Query: 169 SGSQE 173
               E
Sbjct: 662 GNVLE 666



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   + F  +   G  P + TYN +I   C    ++ A  LFE++    L P+++T+  +
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K GR+DD    F +M +   + +V+TY+ LI+ + K   +    + Y EM  N +
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 363

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            PN+    T            +A++ Y  M R G++P+    ++L D N
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+K +  +   GL P+  TY ++I   C +  L +A +L  ++  V ++ N +
Sbjct: 379 KEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVV 438

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID  C   RM +A  +F KM   G   N+ +Y+ LI G+ K++NM  A ++  E+
Sbjct: 439 TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 498

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               I P+       I G     +   A  + + M   GI  + L+ +TL D   +S   
Sbjct: 499 KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 558

Query: 172 QE 173
            E
Sbjct: 559 TE 560



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 69/127 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A +LFG++   G+ P++ +YN +I G+     +D A++L  +L    +KP+ + + 
Sbjct: 452 RMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 511

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             I   C   +++ A ++ ++M E G KAN + Y+ L+D YFKS N      + +EM E 
Sbjct: 512 TFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKEL 571

Query: 127 NISPNIA 133
           +I   + 
Sbjct: 572 DIEVTVV 578



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI    L+ A++ F ++    + P   + N ++  +  L + D+  + F+ +     +P
Sbjct: 201 VLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARP 260

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              T+ I+ID  CKEG ++ A  +F +M  +G   + VTY+ +IDG+ K   +      +
Sbjct: 261 TVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFF 320

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EEM +    P++             G+    ++ Y  M  NG+ P+ +  STL D
Sbjct: 321 EEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVD 375



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 11  ALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A+  F +++ D GL+ +   +  +I G C  N+++ A  LFE++    L P+   +T L+
Sbjct: 596 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM 655

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D   K+G + +A  +  KM E G K +++ Y+ L+ G      ++ A    EEM    I 
Sbjct: 656 DGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIH 715

Query: 130 PN 131
           P+
Sbjct: 716 PD 717


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 84/154 (54%), Gaps = 4/154 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+  F ++ + G+EPD++T+NT+I  +C   R D A +LFE++      P + T+ I
Sbjct: 420 LGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNI 479

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+   ++   +    M S+M E+G   N++TY+ L+D Y +S   K A D  E M  + 
Sbjct: 480 MINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADG 539

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+    PT    L ++  + G+ PD +  +TL
Sbjct: 540 LKPS----PTMYHALVNAYAQRGLRPDVITYTTL 569



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           ++P    YN ++ GY  +  L  A Q+ ++++   + P+  T+++L+DA+ + GR + A 
Sbjct: 295 IKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 354

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP---------NIA 133
           ++  +M   G K +   +S ++ G+    + + AF V  EM  + + P         +  
Sbjct: 355 ILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTF 414

Query: 134 GRPT---EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           G+      AM  ++ M   GI PD +  +TL D
Sbjct: 415 GKYNCLGHAMDAFNKMREEGIEPDVVTWNTLID 447



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)

Query: 9   DAAL--KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           DAAL  +L G L +  LEPD   ++ +I  +      D A++L      + L P S   T
Sbjct: 208 DAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVT 267

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LI A    GR+ +A  +F +    G  K     Y+ L+ GY +  ++K+A  V +EM +
Sbjct: 268 ALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQ 327

Query: 126 NNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             ++P+             AGR   A  L   M  +G+ P   + S +
Sbjct: 328 CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRI 375



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 16/169 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           ++A  L  ++   G++P    ++ I+ G+       +A  +  ++    ++P+   + ++
Sbjct: 351 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVM 410

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K   +  A   F+KM E+G + +VVT++ LID + K      A +++EEM E+N 
Sbjct: 411 IDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNC 470

Query: 129 SP---------NIAGRP-----TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            P         N+ G        EAM     M   G++P+ +  +TL D
Sbjct: 471 PPGTTTYNIMINLLGEQEHWEGVEAM--LSEMKEQGLVPNIITYTTLVD 517



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 16/184 (8%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   L  A ++  +++  G+ PD  TY+ ++  Y    R + A  L +++    +KP+S
Sbjct: 310 VRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSS 369

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             F+ ++  F   G    A  +  +M   G + +   Y+ +ID + K   +  A D + +
Sbjct: 370 YVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNK 429

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M E  I P++             GR   A +L++ M R    P G   +T  +  +   G
Sbjct: 430 MREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM-RESNCPPG---TTTYNIMINLLG 485

Query: 171 SQEH 174
            QEH
Sbjct: 486 EQEH 489



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 25/151 (16%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L ++ H +    +  ++ ++GL P+IITY T++  Y    R  EA+   E +    LKP
Sbjct: 483 LLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 542

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +   +  L++A+                 ++G + +V+TY+ L+    + +       +Y
Sbjct: 543 SPTMYHALVNAYA----------------QRGLRPDVITYTTLMKALIRVEQFDKVPVIY 586

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGI 151
           EEM  +  +P+   R         +MLR+G+
Sbjct: 587 EEMITSGCAPDRKAR---------AMLRSGL 608


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+++ Y T++ GYC + R+DE + LF ++    +KP++I ++I
Sbjct: 563 MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSI 622

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   + GR   A M F +M E G   ++ TY+ ++ G FK++    A  +++E+   N
Sbjct: 623 IIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMN 682

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI              R  EA  L+ S+ R+ ++P+ +  S +
Sbjct: 683 VKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIM 728



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++ F Q+ D+G+ PD   YN +I G+C+   L +A +L  ++    +  + + F+ 
Sbjct: 458 MDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 517

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK GR+ DA  +F   +  G   + V YS L+DGY     M+ A  V++ M    
Sbjct: 518 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 577

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           I PN+             GR  E + L+  ML+ GI P  +L S + D   Q+ 
Sbjct: 578 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAG 631



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 75/122 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + GL PD + Y+ ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 531 AQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVN 590

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML++G K + + YS +IDG F++     A   + EM E+ I+ 
Sbjct: 591 GYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAM 650

Query: 131 NI 132
           +I
Sbjct: 651 DI 652



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C +D    LF  +   G+ PD  T+N +I  Y +   LD+A+ +F ++    +KP+ +
Sbjct: 385 KGCLVDMT-DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 443

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I A C+ G+MDDA   F++M+++G   +   Y+CLI G+    ++  A ++  E+
Sbjct: 444 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 503

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N +  +I             GR  +A  ++D  +  G+ PD ++ S L D
Sbjct: 504 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMD 555



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G+  DI+ +++II   C L R+ +A  +F+    V L P+++ +++L+D
Sbjct: 496 AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMD 555

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+M+ A  +F  M+  G + NVV Y  L++GY K   +     ++ EM +  I P
Sbjct: 556 GYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 615

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +             AGR   A   +  M  +GI  D
Sbjct: 616 STILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMD 651



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 9/128 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFT 66
           AL  FGQL   GL  +II  N ++ G+C   R DEA+ +      +L CV   P+  +++
Sbjct: 143 ALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCV---PDVFSYS 199

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           IL+ + C +G+   A  +   M E G     NVV Y+ +IDG+FK  ++  A D+++EM 
Sbjct: 200 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV 259

Query: 125 ENNISPNI 132
           +  I P++
Sbjct: 260 QRGIPPDL 267



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  ++ A  LF ++  RG+ PD++TYN+++   C    +D+A     ++   ++ PN
Sbjct: 242 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 301

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  +   G+  +A  +F +M       +VVT S L+    K   +K A DV++
Sbjct: 302 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 361

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M     +P++             G   +   L+D ML +GI PD
Sbjct: 362 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 406



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A     Q+ ++ + P+  TYN +I GY S  +  EAV++F+++    + P+
Sbjct: 277 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 336

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T ++L+ + CK G++ +A  +F  M  KG   +V +Y+ +++GY     +    D+++
Sbjct: 337 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD 396

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  + I+P+              G   +AM +++ M  +G+ PD +   T+
Sbjct: 397 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 448



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ YNT+I G+     +++A  LF+++    + P+ +T+  ++ A CK   MD A   
Sbjct: 230 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 289

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M+ K    N  TY+ LI GY  +   K A  V++EM  ++I P++            
Sbjct: 290 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G+  EA  ++D+M   G  PD
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPD 371



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +F  +  +G  PD+ +YN ++ GY +   L +   LF+ +    + P+
Sbjct: 347 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 406

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF +LI A+   G +D A ++F++M + G K +VVTY  +I    +   M  A + + 
Sbjct: 407 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 466

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +  ++P+              G   +A +L   ++ NG+  D +  S++
Sbjct: 467 QMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 518



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  DI TYN ++ G       DEA+ LF++L  + +K N IT   +ID   +
Sbjct: 640 FHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQ 699

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +       NVVTYS +I    K   ++ A D++  M      PN
Sbjct: 700 TRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 756



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ +IIT NT+I G     R++EA  LF  ++  +L PN
Sbjct: 662 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPN 721

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++I+I    KEG +++A  MFS M   G + N    + ++    K   +  A     
Sbjct: 722 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 781

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 782 KIDERNFS 789



 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P S T+ IL+D   +  R + A   F ++L  G + N++  + L++G+ +++    A 
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 118 DV 119
           D+
Sbjct: 180 DI 181


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 74/128 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +LF ++T RGL PD ++YNT+I G C   R  EA +LF+ +      PN +
Sbjct: 383 KAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLV 442

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++IL+D   K+G +D A  +F  M   G K ++VTY+ +IDG  K    K A +++ E+
Sbjct: 443 TYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAEL 502

Query: 124 CENNISPN 131
               + PN
Sbjct: 503 SVKGLQPN 510



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 18/182 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ++ KE  +  A  +   +T+ G+EPD+ TYNT++ GYC    + EA ++FE +      P
Sbjct: 310 IMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMP 369

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  +F+IL++ +CK  R+D+A  +F +M  +G   + V+Y+ LI G  +++    A +++
Sbjct: 370 DVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELF 429

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           ++M  N   PN+             G   +AM L+ +M  +G+ PD      L  YN+  
Sbjct: 430 KDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPD------LVTYNIMI 483

Query: 169 SG 170
            G
Sbjct: 484 DG 485



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A+ +F ++   G+ P ++TY ++I G  +L R  EA  L  ++    + P+
Sbjct: 241 LCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPD 300

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F++LID  CKEG + +A ++   M E G + +V TY+ L++GY     +  A  V+E
Sbjct: 301 LVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFE 360

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P++            A R  EA QL+D M   G++PD +  +TL
Sbjct: 361 VMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTL 412



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           CH+D    + G++   GLEP++IT++T+I G+C   ++  A++LF+ +     KPN  ++
Sbjct: 140 CHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSY 199

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +I+I   C+ G+  +   +   M   G + +VV Y+ ++D   K + +  A  ++ +M  
Sbjct: 200 SIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKG 259

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             I P +             GR  EA  L + M    IMPD +  S L D
Sbjct: 260 TGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLID 309



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  A++LF  +  RG +P++ +Y+ II G C + +  E ++L E +  V  +P+ + 
Sbjct: 174 EGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVI 233

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  ++D  CK+  +++A  +F KM   G    VVTY+ LI G       K AF +  EM 
Sbjct: 234 YNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK 293

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             NI P++             G  +EA  +  +M   G+ PD    +TL +
Sbjct: 294 GGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMN 344



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 23/162 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  H    + L  Q+   G+  D+++   +I  +C L  +D    +  K+  + L+PN
Sbjct: 101 LVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPN 160

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF+ LI+ FC EG++  A  +F  M+ +G K NV +YS +I G               
Sbjct: 161 VITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKG--------------- 205

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +C         G+ TE ++L + M   G  PD ++ +T+ D
Sbjct: 206 -LCR-------VGKTTEVIKLLEHMKVVGCEPDVVIYNTIVD 239



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 53/87 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +LD A+ LF  + + GL+PD++TYN +I G C   +  +A +LF +L+   L+PN
Sbjct: 451 LSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPN 510

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM 88
           +   T  ID  CK G +D+A   F +M
Sbjct: 511 NWVCTPTIDGVCKGGLLDEAHKAFRQM 537


>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
 gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
          Length = 846

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  CH   +  A  L G + + G+ P++ +YN +I G+C      +A +LFE++    
Sbjct: 225 MILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFKLFEEMHRSG 284

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
            +P  +T+ IL+D  C EGRM +A  +F +M + G +AN +T++ LIDGY K+  M  A 
Sbjct: 285 CEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKTGRMDQAC 344

Query: 118 DVYEEMCENNISPN 131
             Y EM    + P+
Sbjct: 345 AAYREMKARGLVPD 358



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            +E +   ALK +  +   GL+PD I ++  I G C L+ ++EA Q F ++T   + PN+
Sbjct: 506 FREGNAVCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNN 565

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  +I A C+ G M +A  +   M + G   ++ T + LIDG  +   ++   ++  +
Sbjct: 566 FTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLD 625

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           MC N ++P+     T             AM   + ML  G  PD
Sbjct: 626 MCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPD 669



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 15/173 (8%)

Query: 6   CHLD---AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C LD    A + F ++T RG+ P+  TYN+II   C    + EA++L + +    L P+ 
Sbjct: 541 CRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDI 600

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  ILID  C+EG+++    +   M   G   + VTY+ +I+ Y ++++M SA +   +
Sbjct: 601 YTSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNK 660

Query: 123 MCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M      P+I                 +A ++ D ++  G  PD +  +TL D
Sbjct: 661 MLAAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYNTLMD 713



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 59/99 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF ++   G EP ++TYN ++   C   R+ EA +LF+++  V ++ N+ITF +LID
Sbjct: 273 AFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLID 332

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            + K GRMD A   + +M  +G   +  T++ +  G +K
Sbjct: 333 GYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYK 371



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 46/199 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +C LD A +L     ++G    +  +N +I  Y      +EA +L+  +  + L P+
Sbjct: 401 LCWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPS 460

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP---------------------------- 93
           S TF  LI   C +GR+D+A ++   M+ KG                             
Sbjct: 461 SSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDASFREGNAVCALKCWDD 520

Query: 94  ------KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGR 135
                 + + + +S  I+G  +   +  A+  + EM    I PN             AG 
Sbjct: 521 MGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGN 580

Query: 136 PTEAMQLYDSMLRNGIMPD 154
            TEA++L  +M +NG++PD
Sbjct: 581 MTEALKLQQNMRQNGLVPD 599



 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 44/194 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L  E  +  A +LF ++   G++ + IT+N +I GY    R+D+A   + ++    L P
Sbjct: 298 VLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGLVP 357

Query: 61  NSITFTI--------------------------------LIDAFCKEGRMDDATMMFSKM 88
           +S TF I                                L+   C + R+DDA  +    
Sbjct: 358 DSCTFNIIAAGAYKFGHAAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWELLRGA 417

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
           +E+G   +V  ++ LI  Y K    + AF++Y  M +  ++P+ +            GR 
Sbjct: 418 IEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRL 477

Query: 137 TEAMQLYDSMLRNG 150
            EA  L + M+  G
Sbjct: 478 DEAQLLLEHMVSKG 491



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+    L   +   GL PD +TYNTII  YC    ++ A+    K+     +P+
Sbjct: 610 LCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPD 669

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             T+ I + + C    ++ A  +  +++  G   + VTY+ L+DG
Sbjct: 670 IFTYNIWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYNTLMDG 714



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           +  A  +FE++     +P+  TF  +I  FC  G +  A+ +   M E G   NV +Y+ 
Sbjct: 200 VHAAWNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNI 259

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNG 150
           LI G+      + AF ++EEM  +   P +             GR  EA +L+D M + G
Sbjct: 260 LIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVG 319

Query: 151 IMPDGLLLSTLADYNLQSSGSQEHC 175
           I  + +  + L D   ++    + C
Sbjct: 320 IQANTITFNVLIDGYAKTGRMDQAC 344



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A+    ++   G EPDI TYN  +   CS + L++A ++ ++L  +   P+S+T+  
Sbjct: 651 MNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYNT 710

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  C +  +D A ++  ++++   + N +T +  +  + K    K A    E++ E++
Sbjct: 711 LMDGICSD-VLDRAMILTGRLIKMAFQPNTITLNVFLSHFCKQGFGKRALMWAEKLREDS 769

Query: 128 ISPNIAGR 135
              + A R
Sbjct: 770 FVFDDATR 777



 Score = 39.3 bits (90), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 12/102 (11%)

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           + G +  A  +F +M  +GP+ ++ T++ +I G+     ++ A  +   M E  I PN+ 
Sbjct: 196 RSGEVHAAWNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVC 255

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       G   +A +L++ M R+G  P  +  + L D
Sbjct: 256 SYNILIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVD 297


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 83/129 (64%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ + + AL+LF  L  + L PD++ YN++I G C    L +A +L++ +   ++ PN +
Sbjct: 414 RDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHV 473

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ILID+ C++G++++A     +M+ KG   N++TY+ +I GY +S N+K      ++M
Sbjct: 474 TYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 124 CENNISPNI 132
            ++NI P++
Sbjct: 534 MQDNILPDL 542



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A +L  ++ +RG+ PD+ T+ T+I GYC     ++A+QLF+ L   +L+P+
Sbjct: 377 LCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPD 436

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LID  C++G +  A  ++  M  +    N VTYS LID + +   ++ AF   +
Sbjct: 437 VVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLD 496

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM      PNI            +G   +  Q    M+++ I+PD +  +TL
Sbjct: 497 EMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTL 548



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +DAA+ L   + ++GL+P I+T+N+++ G C   R D+A ++F  +    + P+  +F I
Sbjct: 208 VDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNI 267

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC+ G +++A   + +M ++G   +VV++SCLI  +     M  A     EM    
Sbjct: 268 LIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLG 327

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+             AG  +EA+++ D M+  G +PD +  +TL
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTL 373



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A     ++  +G  P+I+TYN+II GYC    + +  Q  +K+    + P+ ITF 
Sbjct: 487 QVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFN 546

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  + KE  M  A  +F+ M ++  + + VTY+ +I+G+ +  NM+ A  V+++M  +
Sbjct: 547 TLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGAS 606

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            I P+             AG   EA QL+D M+  G  PD
Sbjct: 607 GIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 92/168 (54%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+K + ++  RG+ PD+++++ +I  + +  ++D A     ++  + L P+ + +T+
Sbjct: 278 VEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTM 337

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  FC+ G M +A  +  +M+  G   +VVTY+ L++G  K   +  A ++  EM E  
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERG 397

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++P++             G   +A+QL+D++L   + PD +  ++L D
Sbjct: 398 VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLID 445



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  AL++  ++   G  PD++TYNT++ G C  +RL +A +L  ++    + P+  TFT 
Sbjct: 348 MSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTT 407

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C++G  + A  +F  +L +  + +VV Y+ LIDG  +  ++  A +++++M    
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           I PN              G+  EA    D M+  G +P+
Sbjct: 468 IFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPN 506



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A     ++   GL PD + Y  +I G+C    + EA+++ +++  +   P+ +T+  
Sbjct: 313 MDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNT 372

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CK+ R+ DA  + ++M E+G   ++ T++ LI GY +  N + A  +++ +    
Sbjct: 373 LLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQR 432

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           + P++             G   +A +L+D M    I P+ +  S L D + +    +E
Sbjct: 433 LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEE 490



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A ++F  +    + PD+ ++N +I G+C +  ++EA++ ++++    + P+
Sbjct: 237 LCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPD 296

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F+ LI  F   G+MD A     +M   G   + V Y+ +I G+ ++ +M  A  V +
Sbjct: 297 VVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRD 356

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM      P++              R  +A +L + M   G+ PD    +TL
Sbjct: 357 EMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTL 408



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A  +  ++  R + PD++T+N +I        +D A+ L + +    LKP  +
Sbjct: 169 KSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIV 228

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  ++   CK  R D A  +F  M +     +V +++ LI G+ +   ++ A   Y+EM
Sbjct: 229 TFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEM 288

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  ++P++             G+   A      M   G++PDG++ + +
Sbjct: 289 QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMV 338



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E +  T N ++  YC     D+A  +  ++    + P+ +T  +LIDA  + G +D A  
Sbjct: 154 EVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIA 213

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +   M  KG K  +VT++ ++ G  K +    A +V+  M + +++P++           
Sbjct: 214 LVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFC 273

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
             G   EAM+ Y  M + G+ PD +  S L      + G  +H 
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGL-FSTRGKMDHA 316



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IKE ++  A  +F  +    ++PD +TYN II G+     ++EA ++F+K+    ++P+ 
Sbjct: 553 IKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDR 612

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            T+  LI+     G   +A  +  +M+ +G
Sbjct: 613 YTYMSLINGHVTAGNSKEAFQLHDEMMHRG 642


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++   L+ AL+ FG +  +G  P ++TYNT+I G     R  EA  L +++     KPN
Sbjct: 449 FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPN 508

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+++L++  C+  ++D A  ++ + LEKG K +V  ++ +I G   S  ++ A  +Y 
Sbjct: 509 MITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYS 568

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           EM + N  PN+    T             A +++D +L+ G+ PD
Sbjct: 569 EMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPD 613



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI+    D A   F      GL P++ TYN +I   C   + D+A +L   +      P+
Sbjct: 99  LIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPD 158

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++  LI++  K G M DA  +F +M E+G   +V  Y+ LIDG+FK  ++ +A +++E
Sbjct: 159 VFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWE 218

Query: 122 EMCEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + +  ++ PNI             G+  E+ +++  M +N    D    STL
Sbjct: 219 RLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTL 271



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 25/176 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLKP 60
           L K  ++  ALKLF ++ +RG+ PD+  YN +I G+     +  A +++E+L     + P
Sbjct: 169 LAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYP 228

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  ++ ++I+  CK G+ D++  ++ +M +     ++ TYS LI G   S N+  A  VY
Sbjct: 229 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVY 288

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           +EM E                       NG+ PD ++ +T+ +  L+ +G  E C+
Sbjct: 289 KEMAE-----------------------NGVSPDVVVYNTMLNGYLR-AGRIEECL 320



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 91/184 (49%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A  L  ++  +G +P++ITY+ ++ G C   +LD A+ L+ +      KP+
Sbjct: 484 LSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPD 543

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                I+I   C  G+++DA  ++S+M ++    N+VT++ L++G++K ++ + A  +++
Sbjct: 544 VKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWD 603

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            + +  + P+I              R ++A+   +  +  G++P  +  + L    L   
Sbjct: 604 HILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALK 663

Query: 170 GSQE 173
           G  E
Sbjct: 664 GYME 667



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ AL +  +  +   + D   Y+++I G C   RLDE   + +++T    KPN
Sbjct: 379 LCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPN 438

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                 +I+ F +  +++DA   F  M+ KG    VVTY+ LI+G  K++    A+ + +
Sbjct: 439 PYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVK 498

Query: 122 EMCENNISPNI-----------AGRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM +    PN+            G+  + A+ L+   L  G  PD + +  +  + L SS
Sbjct: 499 EMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPD-VKMHNIIIHGLCSS 557

Query: 170 GSQEHCI 176
           G  E  +
Sbjct: 558 GKVEDAL 564



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 1/126 (0%)

Query: 9   DAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D AL +F ++ +  G +P I +YN+++      N+ DEA   F     + L PN  T+ I
Sbjct: 70  DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNI 129

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C++ + D A  + + M  +G   +V +Y  LI+   K+  M  A  +++EM E  
Sbjct: 130 LIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERG 189

Query: 128 ISPNIA 133
           ++P++A
Sbjct: 190 VTPDVA 195



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 16/154 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF---EKLTCVQLKPNSI 63
           +LD A +++ ++ + G+ PD++ YNT++ GY    R++E ++L+   EK  C  +    +
Sbjct: 280 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTV----V 335

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI    +  ++D+A  ++  + EK   A+ +TY  L+ G  K+  +  A  + EE 
Sbjct: 336 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE- 394

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
            EN       GR       Y SM+ NG+  +G L
Sbjct: 395 AEN-------GRGDLDTFAYSSMI-NGLCREGRL 420



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +D A+ ++  L ++    D +TY  ++ G C    L++A+ + E+    +   +
Sbjct: 344 LFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLD 403

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  ++ +I+  C+EGR+D+   +  +M + G K N    + +I+G+ ++  ++ A   + 
Sbjct: 404 TFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFG 463

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P +            A R +EA  L   ML+ G  P+ +  S L +
Sbjct: 464 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMN 517



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D + +++ ++       D+ TY+T+I G C    LD A ++++++    + P+ + +  
Sbjct: 246 FDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNT 305

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++ + + GR+++   ++ K++EK     VV+Y+ LI G F++  +  A  ++E + E +
Sbjct: 306 MLNGYLRAGRIEECLELW-KVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKD 364


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 75/128 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +  AA+++F ++  +G+   ++TY+ ++ G CS  +++E V+L +++  + L PN  
Sbjct: 270 KDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLA 329

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   +++ FCK+G M DA      M +K  K NVVTY+ L+DGY +   MK A  V E M
Sbjct: 330 TLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAM 389

Query: 124 CENNISPN 131
               + PN
Sbjct: 390 SGKGVRPN 397



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 18/175 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    +D A + F     R + PD+ T+N +I G C   +L +A  + + +    L P+
Sbjct: 160 LVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPS 219

Query: 62  SITFTILIDAFCKE---GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +T+  +ID +CK    GRM     +  +M+E G   N VT++ L++GY K  N  +A  
Sbjct: 220 VVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVR 279

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           V+EEM +  I+ ++             G+  E ++L D M   G++P+   L+TL
Sbjct: 280 VFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPN---LATL 331



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  ++  +KL  ++ D GL P++ T N+++ G+C    + +A    + +    +KPN
Sbjct: 303 LCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPN 362

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+TIL+D + +  +M DA  +   M  KG + N   Y+CLI G+ ++ + +S   + +
Sbjct: 363 VVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLD 422

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    +  +I             G   +A++L D ML  G+ P  L  +T+
Sbjct: 423 EMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTI 474



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 6/142 (4%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++  +G+  DI+TYN +I   C    + +AV+L +++  V L+P  +T+  +I+ +C
Sbjct: 420 LLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYC 479

Query: 74  KEGRMDDATMMFSKMLEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           ++G +  A  + ++M EKG K ANVVTY+  I    +   M+   ++  EM E  + PN 
Sbjct: 480 EKGNIKSAYEIRTRM-EKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNG 538

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
               T    + + M+  G  PD
Sbjct: 539 VTYDT----IKEGMMEKGYTPD 556



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 56/96 (58%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+KL  ++   GLEP  +TYNTII GYC    +  A ++  ++   + + N +T+ + I 
Sbjct: 452 AVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIK 511

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             C+ G+M++   + ++MLEKG   N VTY  + +G
Sbjct: 512 CLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEG 547



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +   ++ +G+ P+   YN +I G+           L +++    ++ + +T+ +LI 
Sbjct: 382 ALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIG 441

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C +G +  A  +  +ML  G +   +TY+ +I+GY +  N+KSA+++   M +     
Sbjct: 442 ALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRA 501

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  E  +L + ML  G++P+G+   T+ +
Sbjct: 502 NVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKE 546



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 16/164 (9%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P   + N ++    +  R+D A + F+     ++ P+  TF I+I   CK G++  A  +
Sbjct: 148 PSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDV 207

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV---YEEMCENNISPN-------IAG 134
              +   G   +VVTY+ +IDGY K       + V    +EM E  ISPN       + G
Sbjct: 208 AKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNG 267

Query: 135 -----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                    A+++++ M + GI    +  S L  + L S G  E
Sbjct: 268 YCKDSNTAAAVRVFEEMKQQGIAASVVTYSALV-WGLCSEGKVE 310


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 14/152 (9%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+F +++ RG+EPD++ Y  +I   C   ++ +A Q+ +K+    L+PN +T+ +LI++ 
Sbjct: 204 KVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSM 263

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--ENNISP 130
           CKEG + +A  + + MLEKG   + VTY+ LI G      M  A  + EEM   E  + P
Sbjct: 264 CKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEP 323

Query: 131 NIA------------GRPTEAMQLYDSMLRNG 150
           N+             GR  +A Q+ D M  NG
Sbjct: 324 NVVTFNSVIHGLCKTGRMRQAFQVRDMMAENG 355



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   +   G+ PD++TY T+I G C    +D+AV+L  ++    ++PN + ++ L+ 
Sbjct: 132 AVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQ 191

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR +  + +F +M  +G + +VV Y+ LID   +   +K A  V ++M E  + P
Sbjct: 192 GYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEP 251

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G   EAM L ++ML  G+  D +  +TL
Sbjct: 252 NVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTL 294



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 78/122 (63%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L  ++ + G+EP+++ Y+ ++ GYC   R +   ++FE+++   ++P+ + +T 
Sbjct: 164 VDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTG 223

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+ C+EG++  AT +  KM+E+G + NVVTY+ LI+   K  ++K A  +   M E  
Sbjct: 224 LIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKG 283

Query: 128 IS 129
           ++
Sbjct: 284 VA 285



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 13/159 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LDAAL L  ++      P  ++Y T++   C+  R  +AV L   +    ++P+ +T+  
Sbjct: 95  LDAALFLL-RVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGT 153

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C    +D A  +  +M E G + NVV YSCL+ GY K+   +    V+EEM    
Sbjct: 154 LIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRG 213

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           I P++             G+  +A Q+ D M+  G+ P+
Sbjct: 214 IEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPN 252



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A ++  ++ +RGLEP+++TYN +I   C    + EA+ L   +    +  +
Sbjct: 228 LCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALD 287

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML--EKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           ++T+  LI        MD+A  +  +M+  E   + NVVT++ +I G  K+  M+ AF V
Sbjct: 288 AVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQV 347

Query: 120 YEEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + M EN  + N       I G     +  +AM+L D M  +G+ PD    S L
Sbjct: 348 RDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSIL 401



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D ++YNT++   C      +A     ++   + +P ++++T L+ A C E R   A  + 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
             M   G + +VVTY  LI G   + ++  A ++  EMCE+ I PN+            A
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKA 196

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           GR     ++++ M   GI PD ++ + L D
Sbjct: 197 GRWECVSKVFEEMSGRGIEPDVVMYTGLID 226



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 11/171 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++   + + G   +++T+N +I G   ++++ +A++L +++    L+P+
Sbjct: 335 LCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPD 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T++ILI+ FCK  ++D A  + SKM   G +  +V Y  L+    +   M+ A + ++
Sbjct: 395 SFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFD 454

Query: 122 EMCEN------NISPNIAGR-----PTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +N        S  I G         A +    ML  G++PD +  S L
Sbjct: 455 EMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSML 505



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 42/182 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A++L  ++   GLEPD  TY+ +I G+C + ++D A  L  K+    ++P 
Sbjct: 370 LLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPE 429

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM--------------------------------- 88
            + +  L+ A C++G M+ A   F +M                                 
Sbjct: 430 LVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKH 489

Query: 89  -LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSML 147
            L++G   + VTYS LI+ +  S ++ +A  V ++M  +   P++A        ++DS++
Sbjct: 490 MLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVA--------VFDSLI 541

Query: 148 RN 149
           + 
Sbjct: 542 KG 543



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 51/104 (49%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D++ Y+T+I G C L     A +  + +    L P+S+T+++LI+ F   G +  A  + 
Sbjct: 463 DVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVL 522

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            +M   G   +V  +  LI GY    + +   ++  EM   +I+
Sbjct: 523 KQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIA 566


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   + A K+  Q+   G+ P++ITYNT+I G+C + +L +A+ L   L    L P+
Sbjct: 313 LCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ IL+  FCK+G    A  +  +M E+G K + +TY+ LID + +  NM+ A  +  
Sbjct: 373 LVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRS 432

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            M E  ++P+            I G+  EA +L+  M+   + P+ ++ +T+ 
Sbjct: 433 PMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMV 485



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 91/171 (53%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+     A K+  ++ +RG++P  ITY  +I  +  ++ +++A+QL   +  + L P+  
Sbjct: 385 KKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVH 444

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+++LI  FC +G+M++A+ +F  M+ K  + N V Y+ ++ GY K  +   A  ++ EM
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREM 504

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            E  + PN+A             +  EA  L + M+  GI P   +L+ ++
Sbjct: 505 EEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLIS 555



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 16/179 (8%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++IK C     ++ +  L  +L + G  P+++ Y T+I G C    +++A  LF ++   
Sbjct: 168 IVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKF 227

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  N  T+T+LI    K G       M+ KM E G   N+ TY+C+++ + K    K A
Sbjct: 228 GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDA 287

Query: 117 FDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           F +++EM E  +S NI              +  EA ++ D M  +GI P+ +  +TL D
Sbjct: 288 FKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLID 346



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+     A KLF ++ +RG+  +I+TYNT+I G C   + +EA ++ +++    + PN I
Sbjct: 280 KDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLI 339

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID FC  G++  A  +   +  +G   ++VTY+ L+ G+ K  +   A  V +EM
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEM 399

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            E  I P+                  +A+QL   M   G+ PD    S L
Sbjct: 400 EERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVL 449



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 12/138 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D+ ++  +I G C    ++++  L  +L      PN + +T LID  CK G ++ A  +F
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            +M + G  AN  TY+ LI G FK+   K  F++YE+M E+ + PN+             
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKD 281

Query: 134 GRPTEAMQLYDSMLRNGI 151
           GR  +A +L+D M   G+
Sbjct: 282 GRTKDAFKLFDEMRERGV 299



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
             +++ ++ + G+ P++ TYN ++  +C   R  +A +LF+++    +  N +T+  LI 
Sbjct: 252 GFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIG 311

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+E + ++A  +  +M   G   N++TY+ LIDG+     +  A  +  ++    +SP
Sbjct: 312 GLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP 371

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G  + A ++   M   GI P  +  + L D
Sbjct: 372 SLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILID 416


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L+ ++ ++ + P+++TY ++I G+C + +LD+A  L  ++    + PN  TF  L+D
Sbjct: 208 AFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVD 267

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CKEG+M +A  + + M+++G   +V TY+ L+DGYF  +    A +V+  M +  ++ 
Sbjct: 268 GLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTC 327

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++                 EAM L++ M    ++PD +  S+L D
Sbjct: 328 DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLID 372



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 23/162 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +++ALK   ++ DRG  P++ITY ++I   C  +++D+A+ L +K+    ++ N
Sbjct: 374 LCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQAN 433

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ IL+D  CK+GR+ DA  +F  +L KG   +VVTYS +I+G  K    +S FD   
Sbjct: 434 MYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCK----ESLFD--- 486

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                           EA+ L   M   G +PD +   T+ +
Sbjct: 487 ----------------EALTLLSKMEDKGCVPDAIAYETIIN 512



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 15/173 (8%)

Query: 6   CHL---DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL   ++A  +F ++   G +PDIITY T+I G C   ++ E++   ++L    +K + 
Sbjct: 95  CHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDH 154

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  LI+  CK G+   A  +  K+  +  + +VV Y+ +IDG  K + ++ AFD+Y E
Sbjct: 155 VSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCE 214

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M E  + PN            I G+  +A  L + M+   + P+    +TL D
Sbjct: 215 MFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVD 267



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 23/184 (12%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L+KE     A  +F  +   G+  D+ +Y+ +I G   +  LDEA+ LFE +    + P
Sbjct: 305 FLVKEA--GKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIP 362

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + ++ LID  CK GR++ A     +M ++G   NV+TY+ LID   KS  +  A  + 
Sbjct: 363 DVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALL 422

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNG---------IMPDGLLLS 159
           +++ +  I  N+             GR T+A +++  +L  G         IM +GL   
Sbjct: 423 KKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKE 482

Query: 160 TLAD 163
           +L D
Sbjct: 483 SLFD 486



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 68/124 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++ D+G++ ++ TYN ++ G C   RL +A ++F+ L       +
Sbjct: 409 LCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVD 468

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++I+I+  CKE   D+A  + SKM +KG   + + Y  +I+ +F+      A  +  
Sbjct: 469 VVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLR 528

Query: 122 EMCE 125
           EM +
Sbjct: 529 EMID 532



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 23/157 (14%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+ A+  F ++      P II +  I+            + LF+++    ++ N IT  
Sbjct: 29  NLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLN 88

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+++C   +++ A  +F+K+L+ G + +++TY+ LI G                +C N
Sbjct: 89  ILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRG----------------LCLN 132

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  G+  E++  +D ++  GI  D +   TL +
Sbjct: 133 -------GQVKESLNFHDRLVSQGIKLDHVSYGTLIN 162


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 12/154 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++ DRG+  + I +N+II  +C   R+ E+ +LF+ +  + +KP+ IT++ L
Sbjct: 350 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 409

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C  G+MD+AT + + M+  G K + VTYS LI+GY K   MK A  ++ EM  + +
Sbjct: 410 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGV 469

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNG 150
           SP+I              R   A +LY  + ++G
Sbjct: 470 SPDIITYNIILQGLFQTRRTAAAKELYVGITKSG 503



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 75/117 (64%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  + KLF  +   G++PDIITY+T+I GYC   ++DEA +L   +  V +KP+ +
Sbjct: 380 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 439

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           T++ LI+ +CK  RM DA ++F +M   G   +++TY+ ++ G F+++   +A ++Y
Sbjct: 440 TYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 496



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   ++ A+  F Q+ D GL P  I YN++I G C+ N+ + A +L  ++    +  
Sbjct: 307 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 366

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+I F  +ID+ CKEGR+ ++  +F  M+  G K +++TYS LIDGY  +  M  A  + 
Sbjct: 367 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 426

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
             M    + P+       I G     R  +A+ L+  M  +G+ PD
Sbjct: 427 ASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPD 472



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + PN   F+IL+ 
Sbjct: 212 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVC 271

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+ K+ ++++A ++FSKM ++G   N VTY  +I    KS  ++ A   +E+M +  +SP
Sbjct: 272 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 331

Query: 131 -NIA----------------------------------------------GRPTEAMQLY 143
            NI                                               GR  E+ +L+
Sbjct: 332 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 391

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R G+ PD +  STL D
Sbjct: 392 DLMVRIGVKPDIITYSTLID 411



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  LD     + ++ D+ + P+++TYN+II   C    +D+A+++   +    + P+
Sbjct: 98  FFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPD 157

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++  FC  G+  +A +   KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 158 CMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD 217

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            M +  + P I             G   E   L D M+RNGI P+  + S L 
Sbjct: 218 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILV 270



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ PD +TYN+I+ G+CS  +  EA+   +K+    ++P+
Sbjct: 133 LCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD 192

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  +F  M ++G K  + TY  L+ GY     +     + +
Sbjct: 193 VVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 252

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGL 156
            M  N I PN               +  EAM ++  M + G+ P+ +
Sbjct: 253 LMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAV 299



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 15/168 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFTIL 68
           A  +F +L  RG+ PD+ +YN ++ G C  NR  EA++L   +        P+ ++++ +
Sbjct: 36  ARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTV 94

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+ F KEG +D     +++ML++    NVVTY+ +I    K+Q +  A +V   M ++ +
Sbjct: 95  INGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGV 154

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            P+             +G+P EA+     M  +G+ PD +  ++L DY
Sbjct: 155 MPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDY 202



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL+L   + D G +  PD+++Y+T+I G+     LD+    + ++   ++ PN +T+  +
Sbjct: 70  ALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSI 129

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A CK   +D A  + + M++ G   + +TY+ ++ G+  S   K A    ++M  + +
Sbjct: 130 IAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGV 189

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++             GR TEA +++DSM + G+ P+     TL
Sbjct: 190 EPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTL 234



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A KL   +   G++PD +TY+T+I GYC ++R+ +A+ LF ++    + P+ IT+ I
Sbjct: 419 MDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNI 478

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    +  R   A  ++  + + G +  + TY+ ++ G  K++    A  +++ +C  +
Sbjct: 479 ILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMD 538

Query: 128 I-----SPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
           +     + NI        GR  EA  L+ +   NG++P+
Sbjct: 539 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 577



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A+ +F ++  +GL P+ +TY  +I   C   R+++A+  FE++    L P +I
Sbjct: 275 KQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNI 334

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI   C   + + A  +  +ML++G   N + ++ +ID + K   +  +  +++ M
Sbjct: 335 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLM 394

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P+I            AG+  EA +L  SM+  G+ PD +  STL
Sbjct: 395 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTL 444



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L+  +T  G + ++ TYN I+ G C     D+A+++F+ L  + LK  + TF I+I
Sbjct: 491 AAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMI 550

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           DA  K GR D+A  +F      G   N  TY  + +
Sbjct: 551 DALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 586



 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL++F  L    L+ +  T+N +I     + R DEA  LF   +   L PN  T+ ++
Sbjct: 525 DDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 584

Query: 69  IDAFCKEGRMDDATMMFSKMLEKG 92
            +    +G +++   +F  M + G
Sbjct: 585 AENIIGQGLLEELDQLFLSMEDNG 608


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +D AL+L   L   G +P  + YNT++ G CS  R  +A +L  ++      PN  T
Sbjct: 90  EGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEAT 149

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F ++I + C++G +  A  +  KM + G  AN+VTY+ +I+G  + +N+  A  +  +M 
Sbjct: 150 FNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMK 209

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                P+I            A R  +A +L D+M +NG +PD +  +TL  +
Sbjct: 210 SYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGF 261



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 11/171 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++ ++D A+ L  ++   G +PDI+TYNT++ G CS  R  +A +L + +T     P+
Sbjct: 192 LCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPD 251

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TF  LI   C++G M DA  +F +M +KG   N +TYS +I G  K+  +  A +++ 
Sbjct: 252 NVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFN 311

Query: 122 EMCENNISP-----------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM     +P           N      EA+Q    +  +GI P  +L + +
Sbjct: 312 EMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAI 362



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +   +  RG  PD++TYN ++   C      +A++L + +      PN++T+ +L+D
Sbjct: 26  ALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMD 85

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C EG +DDA  +   +   G K + V Y+ ++ G   ++    A ++  EM   N  P
Sbjct: 86  GMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPP 145

Query: 131 NIA------------GRPTEAMQLYDSMLRNG 150
           N A            G   +A+QL + M ++G
Sbjct: 146 NEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG 177



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A++L  +++  G   +I+TYN II G C    +D A+ L  K+     KP+
Sbjct: 157 LCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPD 216

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+   C   R  DA  +   M + G   + VT++ LI    +   M  A +V++
Sbjct: 217 IVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFK 276

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +M +   +PN       I+G     +  +A++L++ M   G  PD
Sbjct: 277 QMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD 321



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           ++P+  TYN +I   C   ++ +A+ + + + C    P+ +T+ IL++A CK      A 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +   M  +G   N VTY+ L+DG     ++  A ++   +  +   P+           
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122

Query: 133 --AGRPTEAMQLYDSMLRNGIMPD 154
             A R  +A +L   MLR    P+
Sbjct: 123 CSAERWGDADELVTEMLRENCPPN 146



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD AL+LF ++  +G  PD I Y  +       + ++EA+Q   KL    + P+
Sbjct: 297 LAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPH 355

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  ++   C+ G+ + A  + + M+  G   + +TY  LI+G      +  A ++  
Sbjct: 356 TVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLI 415

Query: 122 EMCENNISPN 131
           ++C  ++  N
Sbjct: 416 KLCSRDVLVN 425


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A KL   +   GLEP+++T+N++I G+C   +L EA + F ++  + + PN++T+  
Sbjct: 250 LSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNT 309

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ + + G  + A  ++ +M+  G KA+++TY+ LI G  K    K A  + +E+ + N
Sbjct: 310 LINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKEN 369

Query: 128 ISPN-------IAGR-----PTEAMQLYDSMLRNGIMPD 154
           + PN       I+G+        A QLY SM+R+G  P+
Sbjct: 370 LVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPN 408



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A+++  ++   G+ P++++YNT+I G+C+   L  A +L   +    L+PN
Sbjct: 209 LCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPN 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI  FCKEG++ +A   FS+M       N VTY+ LI+GY +  N   A  VYE
Sbjct: 269 VVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYE 328

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  N +  +I             G+  +A  L   + +  ++P+    S L
Sbjct: 329 EMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSAL 380



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL  + ++    + P+  T+N ++   C   +L++AV++  ++  V + PN +++  
Sbjct: 180 VDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNT 239

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C +G +  AT + + M + G + NVVT++ LI G+ K   +  A   + EM   N
Sbjct: 240 LIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMN 299

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++PN              G    A ++Y+ M+RNG+  D L  + L
Sbjct: 300 VTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNAL 345



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 66/128 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A + F ++    + P+ +TYNT+I GY  +   + A +++E++    +K + +
Sbjct: 281 KEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADIL 340

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CKEG+   A  +  ++ ++    N  TYS LI G    +N   AF +Y+ M
Sbjct: 341 TYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSM 400

Query: 124 CENNISPN 131
             +   PN
Sbjct: 401 VRSGCHPN 408



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F ++ D G  P + + N  +      +R+D A+  + ++   ++ PNS TF +++ 
Sbjct: 148 ATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLS 207

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK G+++ A  +  +M   G   NVV+Y+ LI G+     +  A  +   M +N + P
Sbjct: 208 ALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEP 267

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  EA + +  M    + P+ +  +TL +
Sbjct: 268 NVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLIN 312



 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A K++ ++   G++ DI+TYN +I G C   +  +A  L ++L    L PN+ T++ L
Sbjct: 321 NMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSAL 380

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C     D A  ++  M+  G   N  T+  L   + K+++ + AF+V  +M     
Sbjct: 381 ISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDM----F 436

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
           + ++A      +++YD + + G
Sbjct: 437 ARSMASDSNTLLEIYDGLCQCG 458



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 27/155 (17%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A  L  +L    L P+  TY+ +I G C+    D A QL++ +      PN
Sbjct: 349 LCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPN 408

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS--QNMKSAFDV 119
             TF +L  AF K    + A                  ++ L+D + +S   +  +  ++
Sbjct: 409 EQTFKMLTSAFVKNEDFEGA------------------FNVLMDMFARSMASDSNTLLEI 450

Query: 120 YEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
           Y+ +C+        G+   AM+L   M    ++P+
Sbjct: 451 YDGLCQ-------CGKENLAMKLCHEMEARRLIPE 478


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 78/146 (53%), Gaps = 4/146 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +  L+  L  F QLTD GLEPD+ITYN +I G     RL+EA+ L+  +    + PN
Sbjct: 254 LCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 313

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI    K G+  +A  M+ ++L KG K NV TY+ LI GY  S + ++AF  Y 
Sbjct: 314 LYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYG 373

Query: 122 EMCENNISPNIAGRPTEAMQLYDSML 147
            M      PN     +  MQL + ML
Sbjct: 374 RMIVGGCRPN----SSTYMQLPNQML 395



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 91/165 (55%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+ +++ A  LF ++ + G EP+   YN ++ GY      ++  +LFE +    + P+
Sbjct: 184 LLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 243

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++T++ID  C +GR++D    F ++ + G + +++TY+ LI G  KS  ++ A  +Y 
Sbjct: 244 IKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYN 303

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +M +  I+PN+            AG+  EA ++Y+ +L  G  P+
Sbjct: 304 DMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 348



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  LK+  ++ ++G +   +TYNTII G      LDEA+ L+ +L      P   
Sbjct: 116 KSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPC 175

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D   K+G ++DA  +F +MLE G + N   Y+ L++GY  + + +   +++E M
Sbjct: 176 TYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESM 235

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  ++P+I             GR  + +  +  +   G+ PD L+   L  + L  SG 
Sbjct: 236 VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD-LITYNLLIHGLGKSGR 294

Query: 172 QEHCI 176
            E  +
Sbjct: 295 LEEAL 299



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+ E  +D A +LF ++   G +PD  TY+ I+       R+++ +++ E++     K  
Sbjct: 79  LVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKST 138

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I    K   +D+A  ++ +++ +G      TY  L+DG  K  N++ A  +++
Sbjct: 139 YVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFD 198

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM E    PN            IAG   +  +L++SM+  G+ PD
Sbjct: 199 EMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 243



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L  +  + G+     +YN +ICG    + +D A +LF ++  +   P+  T+ +++
Sbjct: 52  AAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLIL 111

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           DA  K  R++D   +  +M  KG K+  VTY+ +I G  KS+ +  A ++Y ++     S
Sbjct: 112 DAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFS 171

Query: 130 PNIAGRPTEAMQLYDSMLRNGIMPD 154
           P     P     L D +L++G + D
Sbjct: 172 PT----PCTYGPLLDGLLKDGNIED 192


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L G++   G+ P I+T+ ++I   C LN  D+A+Q+F ++  +++KP++  +T++I 
Sbjct: 71  AVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIG 130

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK  ++D A   F +M++ G   + VTY+ L+   FK+   +    ++EEM     SP
Sbjct: 131 HLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSP 190

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +            AGR  +A+ L   +   G  P G L STL D
Sbjct: 191 ELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 235



 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 68/113 (60%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P ++TY+ +I G C  +RLD+A  + +K+      P+ +T+T +IDAFCK GR+D+A  +
Sbjct: 364 PSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEAREL 423

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
           F +M E+G   +VV Y+ LI GY ++  +  A  + EEM    I PN+    T
Sbjct: 424 FQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLST 476



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K C  +   ++F ++  +G  P+++TY T++ GYC   R+D+A+ L  +L      P+
Sbjct: 167 LFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPS 226

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++ LID  CK  R D+A  +F   +  G   +V+ Y+  I G  K+  +  A  V+ 
Sbjct: 227 GSLYSTLIDGLCKHDRHDEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHV 284

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E   +P+               R +EA +L D  +    MP   + + L D   +S 
Sbjct: 285 KMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSR 344

Query: 170 GSQEHCI 176
             +E C+
Sbjct: 345 RVEEACV 351



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 13/162 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  +  ++ + G  PD ++YN II   C  NR+ EA +L ++    +  P 
Sbjct: 270 LCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPG 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVY 120
               T+L+D  CK  R+++A ++  +MLE G +A +VVTYS +IDG  K+  +  A+ V 
Sbjct: 330 VPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVL 389

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           ++M      P++             GR  EA +L+  M   G
Sbjct: 390 QKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERG 431



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 68/122 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  +  ++   G  PD++TY  II  +C + RLDEA +LF+++       +
Sbjct: 376 LCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALD 435

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + + ILI  +C+  ++D+A  M  +M  +G + NVV+ S ++DG  K   ++ A  + E
Sbjct: 436 VVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLME 495

Query: 122 EM 123
           +M
Sbjct: 496 KM 497



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 50/203 (24%)

Query: 1   MLIKECHL---DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           ++ K C L   D AL++F Q+ D  ++PD   Y  +I   C +N+LD A   FE++    
Sbjct: 93  LIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSG 152

Query: 58  LKPNSITFTILI-----------------------------------DAFCKEGRMDDAT 82
             P+ +T+T+L+                                   + +CK GR+D A 
Sbjct: 153 CLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQAL 212

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +  ++   G   +   YS LIDG  K      A +++ EM   ++   I          
Sbjct: 213 SLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDVQDVIVYTSFISGLC 271

Query: 133 -AGRPTEAMQLYDSMLRNGIMPD 154
            AG+  EA  ++  M+  G  PD
Sbjct: 272 KAGKLDEAKAVHVKMIEAGCAPD 294



 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
            + N+ T   L++ F  +G   +A  +F   L    + +  TY  LI G+ K++ +  A 
Sbjct: 13  FQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAV 72

Query: 118 DVYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           ++  EM    I+P I    +            +A+Q++  M+   + PD  L + +
Sbjct: 73  NLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVV 128


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F Q  D    P+++TY  ++ G+C  +R++EA +L + ++    +PN I +  LID  CK
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
            G++D+A  + ++M E G  A + TYS LID YFK +    A  V  +M EN+ +PN+  
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      G+  EA +L   M   G  P+ +  + + D
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  +  ++  +G  PD  TY+ ++   C+ ++++ A  LFE++    L  +  T+TI+
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +D+FCK G ++ A   F++M E G   NVVTY+ LI  Y K++ +  A +++E M     
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            PNI            AG+  +A Q+++ M  +  +PD
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 28/184 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  LF ++   GL  D+ TY  ++  +C    +++A + F ++  V   PN +T+T 
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--- 124
           LI A+ K  ++  A  +F  ML +G   N+VTYS LIDG+ K+  ++ A  ++E MC   
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618

Query: 125 -------------ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
                        +N+  PN+            + R  EA +L D+M   G  P+ ++  
Sbjct: 619 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 678

Query: 160 TLAD 163
            L D
Sbjct: 679 ALID 682



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A ++  ++++ G    + TY+++I  Y  + R D A ++  K+      PN
Sbjct: 684 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T +ID  CK G+ D+A  +   M EKG + NVVTY+ +IDG+     +++  ++ E
Sbjct: 744 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 803

Query: 122 EMCENNISPN 131
            M    ++PN
Sbjct: 804 RMGSKGVAPN 813



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A KL   ++  G EP+ I Y+ +I G C + +LDEA ++  +++         
Sbjct: 651 KSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLY 710

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LID + K  R D A+ + SKMLE     NVV Y+ +IDG  K      A+ + + M
Sbjct: 711 TYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM 770

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            E    PN+             G+    ++L + M   G+ P+ +    L D+
Sbjct: 771 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDH 823



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 66/126 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+  ++ +    P+++ Y  +I G C + + DEA +L + +     +PN +T+T +
Sbjct: 726 DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAM 785

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F   G+++    +  +M  KG   N VTY  LID   K+  +  A ++ EEM + + 
Sbjct: 786 IDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHW 845

Query: 129 SPNIAG 134
             + AG
Sbjct: 846 PTHTAG 851



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A K + ++   G+  + I  ++     CS  + ++A  +  ++      P++ T++ 
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  C   +M+ A ++F +M   G  A+V TY+ ++D + K+  ++ A   + EM E  
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            A + + A +L+++ML  G +P+ +  S L D + ++   ++ C
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 608



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A KL   + ++G +P+++TY  +I G+  + +++  ++L E++    + PN +T+ +L
Sbjct: 761 DEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVL 820

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  CK G +D A  +  +M +     +   Y  +I+G+  ++    +  + +E+ +++ 
Sbjct: 821 IDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDT 878

Query: 129 SP 130
           +P
Sbjct: 879 AP 880



 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+  G+L D    P   TYN +I  +   +RLD A  +  +++   L+ +  T      
Sbjct: 219 ALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAY 278

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK G+  +A  +      +    + V Y+ LI G  ++   + A D    M   +  P
Sbjct: 279 SLCKVGKWREALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335

Query: 131 NIAGRPT 137
           N+    T
Sbjct: 336 NVVTYST 342



 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+    ++      P+++TY+T++CG  +  +L    ++   +      P+   F  
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN------MKSAFDVYE 121
           L+ A+C  G    A  +  KM++ G     V Y+ LI      ++      +  A   Y 
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    +  N             AG+  +A  +   M+  G +PD    S + +Y
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNY 492



 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--VQLKPNSITFTIL 68
           +L L  ++      P +  Y  +I       RL+ A++L E++      L   S T+  L
Sbjct: 866 SLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSL 925

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           I++ C   +++ A  +FS+M +KG    + ++  LI G F++  +  A 
Sbjct: 926 IESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL 974



 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/101 (18%), Positives = 47/101 (46%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD + Y  +I G C  +  +EA+    ++      PN +T++ L+     + ++     +
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            + M+ +G   +   ++ L+  Y  S +   A+ + ++M +
Sbjct: 360 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK 400



 Score = 35.8 bits (81), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 2   LIKECHLDAALKLFGQLT--DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           LIK   L+ AL+L  ++      L     TYN++I   C  N+++ A QLF ++T   + 
Sbjct: 892 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVI 951

Query: 60  PNSITFTILIDAFCKEGRMDDATMMF 85
           P   +F  LI    +  ++ +A ++ 
Sbjct: 952 PEMQSFCSLIKGLFRNSKISEALLLL 977


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++   G+ PD+ TYN +I  Y  +  +D+A  LFE +     KP+ IT+  LI+   
Sbjct: 450 LFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLG 509

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K G +D+A M+F +M EKG   +V TYS LI+ + KS  +  A +++ +M      PN+ 
Sbjct: 510 KNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVV 569

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+  EA + Y++M + G+ PD +  S L
Sbjct: 570 TYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSIL 609



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  LF  +     +PD+ITYN++I        LDEA  LF+++      P+  T++I
Sbjct: 479 VDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSI 538

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ F K  ++D A  +F  M+ +G   NVVTY+ L+D   +      A   YE M +  
Sbjct: 539 LIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMKQQG 598

Query: 128 ISPN 131
           ++P+
Sbjct: 599 LTPD 602



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 64/122 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   + ++G+  D+  YN +      L ++     LF+K+    + P+  T+ I+I 
Sbjct: 412 AIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMIS 471

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           ++ + G +D A+ +F  M     K +V+TY+ LI+   K+ ++  A  +++EM E    P
Sbjct: 472 SYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGP 531

Query: 131 NI 132
           ++
Sbjct: 532 DV 533



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 62/129 (48%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   +    +++ ++  +G   DI  YN ++        +D+A Q+FE +     +P++
Sbjct: 197 LRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDA 256

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+TILI    + G+       F +M+ KG   N++ Y+ LI+   K++ +     V  +
Sbjct: 257 YTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSK 316

Query: 123 MCENNISPN 131
           M E    PN
Sbjct: 317 MIEGGCQPN 325



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF ++ ++G  PD+ TY+ +I  +   N++D A  LF  +      PN
Sbjct: 508 LGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPN 567

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + G+  +A   +  M ++G   + +T S L
Sbjct: 568 VVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSIL 609



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  +  +  EPD  TY  +I       +  + +  F+++       N
Sbjct: 231 LAKSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCALN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I +  LI+A  K   +D    + SKM+E G + N  TYS  +D
Sbjct: 291 LIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLD 334



 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 67/152 (44%), Gaps = 15/152 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++   G+  +I T N ++        + + ++L  K     L+ N  T+  ++ 
Sbjct: 138 ALRIVSEMERDGVSGNISTVNLLVGIGGGGVEVTKCLELAMKWG---LRLNGYTYKCILQ 194

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  +   +     ++ +M  KG   ++  Y+ L+D   KS  +  A+ V+E+M +    P
Sbjct: 195 AHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEP 254

Query: 131 NI------------AGRPTEAMQLYDSMLRNG 150
           +             AG+ ++ +  +D M+  G
Sbjct: 255 DAYTYTILIRMSGRAGKASKFLSFFDEMVSKG 286


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F Q  D    P+++TY  ++ G+C  +R++EA +L + ++    +PN I +  LID  CK
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
            G++D+A  + ++M E G  A + TYS LID YFK +    A  V  +M EN+ +PN+  
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      G+  EA +L   M   G  P+ +  + + D
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  +  ++  +G  PD  TY+ ++   C+ ++++ A  LFE++    L  +  T+TI+
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +D+FCK G ++ A   F++M E G   NVVTY+ LI  Y K++ +  A +++E M     
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            PNI            AG+  +A Q+++ M  +  +PD
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 28/184 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  LF ++   GL  D+ TY  ++  +C    +++A + F ++  V   PN +T+T 
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--- 124
           LI A+ K  ++  A  +F  ML +G   N+VTYS LIDG+ K+  ++ A  ++E MC   
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618

Query: 125 -------------ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
                        +N+  PN+            + R  EA +L D+M   G  P+ ++  
Sbjct: 619 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 678

Query: 160 TLAD 163
            L D
Sbjct: 679 ALID 682



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A ++  ++++ G    + TY+++I  Y  + R D A ++  K+      PN
Sbjct: 684 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T +ID  CK G+ D+A  +   M EKG + NVVTY+ +IDG+     +++  ++ E
Sbjct: 744 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 803

Query: 122 EMCENNISPN 131
            M    ++PN
Sbjct: 804 RMGSKGVAPN 813



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A KL   ++  G EP+ I Y+ +I G C + +LDEA ++  +++         
Sbjct: 651 KSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLY 710

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LID + K  R D A+ + SKMLE     NVV Y+ +IDG  K      A+ + + M
Sbjct: 711 TYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM 770

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            E    PN+             G+    ++L + M   G+ P+ +    L D+
Sbjct: 771 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDH 823



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 66/126 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+  ++ +    P+++ Y  +I G C + + DEA +L + +     +PN +T+T +
Sbjct: 726 DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAM 785

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F   G+++    +  +M  KG   N VTY  LID   K+  +  A ++ EEM + + 
Sbjct: 786 IDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHW 845

Query: 129 SPNIAG 134
             + AG
Sbjct: 846 PTHTAG 851



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A K + ++   G+  + I  ++     CS  + ++A  +  ++      P++ T++ 
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  C   +M+ A ++F +M   G  A+V TY+ ++D + K+  ++ A   + EM E  
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            A + + A +L+++ML  G +P+ +  S L D + ++   ++ C
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 608



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A KL   + ++G +P+++TY  +I G+  + +++  ++L E++    + PN +T+ +L
Sbjct: 761 DEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVL 820

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  CK G +D A  +  +M +     +   Y  +I+G+  ++    +  + +E+ +++ 
Sbjct: 821 IDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDT 878

Query: 129 SP 130
           +P
Sbjct: 879 AP 880



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+  G+L D    P   TYN +I  +   +RLD A  +  +++   L+ +  T      
Sbjct: 219 ALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAY 278

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK G+  +A  +      +    + V Y+ LI G  ++   + A D    M   +  P
Sbjct: 279 SLCKVGKWREALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335

Query: 131 NIAGRPT 137
           N+    T
Sbjct: 336 NVVTYST 342



 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+    ++      P+++TY+T++CG  +  +L    ++   +      P+   F  
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN------MKSAFDVYE 121
           L+ A+C  G    A  +  KM++ G     V Y+ LI      ++      +  A   Y 
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYS 437

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    +  N             AG+  +A  +   M+  G +PD    S + +Y
Sbjct: 438 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNY 492



 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTIL 68
           +L L  ++      P +  Y  +I       RL+ A++L E++      L   S T+  L
Sbjct: 866 SLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSL 925

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           I++ C   +++ A  +FS+M +KG    + ++  LI G F++  +  A 
Sbjct: 926 IESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL 974



 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/101 (18%), Positives = 47/101 (46%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD + Y  +I G C  +  +EA+    ++      PN +T++ L+     + ++     +
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            + M+ +G   +   ++ L+  Y  S +   A+ + ++M +
Sbjct: 360 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK 400



 Score = 35.8 bits (81), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 2   LIKECHLDAALKLFGQLT--DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           LIK   L+ AL+L  ++      L     TYN++I   C  N+++ A QLF ++T   + 
Sbjct: 892 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVI 951

Query: 60  PNSITFTILIDAFCKEGRMDDATMMF 85
           P   +F  LI    +  ++ +A ++ 
Sbjct: 952 PEMQSFCSLIKGLFRNSKISEALLLL 977


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + +A  +F ++  RGL P ++++NT+I G C    ++E  +L   +   ++ P+  TF+ 
Sbjct: 158 VGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSA 217

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CKEGR+D+ +++F +M  KG   N VT++ LIDG  K   +  A   ++ M    
Sbjct: 218 LINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQG 277

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++             G   EA +L + M  +G+ PD +  +TL D
Sbjct: 278 VRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLID 325



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 53/218 (24%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D ALK F  +  +G+ PD++TYN +I G C +  L EA +L  +++   L+P+ I
Sbjct: 259 KGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRI 318

Query: 64  TFTILID-----------------------------------AFCKEGRMDDATMMFSKM 88
           TFT LID                                     C++GR+ DA  M   M
Sbjct: 319 TFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDM 378

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
           L  G K +  TY+ ++D + K  N+   F + +EM  +   P +             G+ 
Sbjct: 379 LSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQV 438

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             A  L D+ML  G+ P+ +       YN+   G  +H
Sbjct: 439 KNAKMLLDAMLNVGVAPNDI------TYNILLEGHSKH 470



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD    LF ++  +GL P+ +T+  +I G C   ++D A++ F+ +    ++P+
Sbjct: 222 LCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPD 281

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK G + +A  + ++M   G + + +T++ LIDG  K  +M+SA ++  
Sbjct: 282 LVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKR 341

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E  I   ++A           GR  +A ++   ML  G  PD    + + D
Sbjct: 342 RMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVD 395



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   L+ +   + ++ D G  P+   +N ++ G+C +  +  A  +F+++    L+P  
Sbjct: 118 LRPVELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTV 177

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++F  LI   CK G +++   +   M  +    +V T+S LI+G  K   +     +++E
Sbjct: 178 VSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDE 237

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           MC   + PN              G+   A++ +  ML  G+ PD
Sbjct: 238 MCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPD 281



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++    KL  ++   G  P ++TYN ++ G C   ++  A  L + +  V + PN I
Sbjct: 399 KKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDI 458

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+ IL++   K G   D  +  S   EKG   +  +Y+ L++
Sbjct: 459 TYNILLEGHSKHGSSVDVDIFNS---EKGLVKDYASYTALVN 497


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 78/146 (53%), Gaps = 4/146 (2%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L  +  L+  L  F QLTD GLEPD+ITYN +I G     RL+EA+ L+  +    + PN
Sbjct: 951  LCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 1010

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              T+  LI    K G+  +A  M+ ++L KG K NV TY+ LI GY  S + ++AF  Y 
Sbjct: 1011 LYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYG 1070

Query: 122  EMCENNISPNIAGRPTEAMQLYDSML 147
             M      PN     +  MQL + ML
Sbjct: 1071 RMIVGGCRPN----SSTYMQLPNQML 1092



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 13/187 (6%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K+ +++ A  LF ++ + G EP+   YN ++ GY      ++  +LFE +    + P+
Sbjct: 881  LLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 940

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++T++ID  C +GR++D    F ++ + G + +++TY+ LI G  KS  ++ A  +Y 
Sbjct: 941  IKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYN 1000

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            +M +  I+PN+            AG+  EA ++Y+ +L  G  P+    + L       S
Sbjct: 1001 DMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIR-GYSVS 1059

Query: 170  GSQEHCI 176
            GS E+  
Sbjct: 1060 GSPENAF 1066



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  LK+  ++ ++G +   +TYNTII G      LDEA+ L+ +L      P   
Sbjct: 813 KSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPC 872

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D   K+G ++DA  +F +MLE G + N   Y+ L++GY  + + +   +++E M
Sbjct: 873 TYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESM 932

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  ++P+I             GR  + +  +  +   G+ PD L+   L  + L  SG 
Sbjct: 933 VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD-LITYNLLIHGLGKSGR 991

Query: 172 QEHCI 176
            E  +
Sbjct: 992 LEEAL 996



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK +  +  +G+ PD++  N ++ G     RL  A ++F +L  + + P++IT+T++I 
Sbjct: 435 ALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIK 494

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K    D+A  +F++M+E     +V+  + LID  +K+     A+ ++ E+ E N+ P
Sbjct: 495 CCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEP 554

Query: 131 ------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                          G+  E MQL + M  N   P+ +  +T+ D
Sbjct: 555 TDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLD 599



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +  + L G++  RG+ P++ +Y   I       RL+EA ++  K+     KP+ +T T+L
Sbjct: 223 ETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVL 282

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C  GR+ DA  +F KM     K + VTY  L+D    S + +S  +++  +  +  
Sbjct: 283 IQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGY 342

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           + N+             GR  EA+ ++D M + GI+P
Sbjct: 343 NDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIP 379



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D AL +F ++  +G+ P   +YN++I G+   +R + A++LF  +      PN  T  
Sbjct: 361 RVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHV 420

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + I+   K G    A   +  M  KG   +VV  + ++ G  K+  +  A  V+ E+   
Sbjct: 421 LFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAM 480

Query: 127 NISP-NI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP NI           A    EAM+++  M+ N   PD L +++L D
Sbjct: 481 GISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLID 529



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 7/167 (4%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K    + A K+F +L +  LEP   TYNT++ G     ++ E +QL E +      P
Sbjct: 530 MLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPP 589

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N IT+  ++D  CK G ++ A  M   M   G   ++ +Y+ ++ G  K   +  AF ++
Sbjct: 590 NIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMF 649

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            +M +  ++P+ A   T    +  S +R+G+M +   L T+ +Y LQ
Sbjct: 650 CQM-KKVLAPDYATVCT----ILPSFVRSGLMKEA--LHTVREYILQ 689



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 12/177 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A ++  ++ + G +PD++T   +I   C   RL +A  +F K+     KP+ +T+ 
Sbjct: 256 RLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYI 315

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D     G     + +++ +   G   NVV+Y+  +D   +   +  A DV++EM + 
Sbjct: 316 TLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQK 375

Query: 127 NISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            I P        I+G     R   A++L++ M  +G  P+G       +Y+ +S  S
Sbjct: 376 GIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGES 432



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+ E  +D A +LF ++   G +PD  TY+ I+       R+++ +++ E++     K  
Sbjct: 776 LVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKST 835

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I    K   +D+A  ++ +++ +G      TY  L+DG  K  N++ A  +++
Sbjct: 836 YVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFD 895

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM E    PN            IAG   +  +L++SM+  G+ PD
Sbjct: 896 EMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 940



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L  +  + G+     +YN +ICG    + +D A +LF ++  +   P+  T+ +++
Sbjct: 749 AAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLIL 808

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           DA  K  R++D   +  +M  KG K+  VTY+ +I G  KS+ +  A ++Y ++     S
Sbjct: 809 DAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFS 868

Query: 130 PNIAGRPTEAMQLYDSMLRNGIMPDG 155
           P     P     L D +L++G + D 
Sbjct: 869 PT----PCTYGPLLDGLLKDGNIEDA 890



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F +L   G+ PD ITY  +I      +  DEA+++F ++   +  P+
Sbjct: 461 LAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPD 520

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    LID   K GR ++A  +F ++ E   +    TY+ L+ G  +   +K    + E
Sbjct: 521 VLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLE 580

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            M  N+  PNI             G    A+ +  SM  NG MPD      L+ YN
Sbjct: 581 GMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPD------LSSYN 630



 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +++  L   G   ++++Y   +   C + R+DEA+ +F+++    + P   ++  LI  F
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGF 391

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K  R + A  +F+ M   GP  N  T+   I+ + KS     A   YE M    I P++
Sbjct: 392 LKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDV 451

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGL 156
                        GR   A +++  +   GI PD +
Sbjct: 452 VAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNI 487



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 65/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A+ ++  +   G+ P + TY+ ++  +      +  V L  ++    ++PN
Sbjct: 181 LVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPN 240

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++TI I    + GR+++A  +  KM E+G K +VVT + LI     +  +  A DV+ 
Sbjct: 241 VYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFW 300

Query: 122 EMCENNISPN 131
           +M  ++  P+
Sbjct: 301 KMKASDQKPD 310



 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYC-----SLNRLDEAVQLFEKLTCVQLKPNSI 63
           + AL+LF  +     +P ++ + T  C Y      +  R+ +  Q+F+ +    +K N  
Sbjct: 82  EEALELFLSVAR---QPRVV-HTTESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVG 137

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  +  A   EG +  A +    M E G   N  TY+ LI    KS   + A DVY+ M
Sbjct: 138 TFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAM 197

Query: 124 CENNISPNI 132
             + + P +
Sbjct: 198 AADGVVPTV 206



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ T+  LI    K G   +A  ++  M   G    V TYS L+  + K ++ ++   + 
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            EM    + PN+            AGR  EA ++   M   G  PD
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPD 275


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 78/146 (53%), Gaps = 4/146 (2%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L  +  L+  L  F QLTD GLEPD+ITYN +I G     RL+EA+ L+  +    + PN
Sbjct: 951  LCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 1010

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              T+  LI    K G+  +A  M+ ++L KG K NV TY+ LI GY  S + ++AF  Y 
Sbjct: 1011 LYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYG 1070

Query: 122  EMCENNISPNIAGRPTEAMQLYDSML 147
             M      PN     +  MQL + ML
Sbjct: 1071 RMIVGGCRPN----SSTYMQLPNQML 1092



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 13/187 (6%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K+ +++ A  LF ++ + G EP+   YN ++ GY      ++  +LFE +    + P+
Sbjct: 881  LLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 940

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++T++ID  C +GR++D    F ++ + G + +++TY+ LI G  KS  ++ A  +Y 
Sbjct: 941  IKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYN 1000

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            +M +  I+PN+            AG+  EA ++Y+ +L  G  P+    + L       S
Sbjct: 1001 DMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIR-GYSVS 1059

Query: 170  GSQEHCI 176
            GS E+  
Sbjct: 1060 GSPENAF 1066



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  LK+  ++ ++G +   +TYNTII G      LDEA+ L+ +L      P   
Sbjct: 813 KSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPC 872

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D   K+G ++DA  +F +MLE G + N   Y+ L++GY  + + +   +++E M
Sbjct: 873 TYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESM 932

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            E  ++P+I             GR  + +  +  +   G+ PD L+   L  + L  SG 
Sbjct: 933 VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD-LITYNLLIHGLGKSGR 991

Query: 172 QEHCI 176
            E  +
Sbjct: 992 LEEAL 996



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK +  +  +G+ PD++  N ++ G     RL  A ++F +L  + + P++IT+T++I 
Sbjct: 435 ALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIK 494

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K    D+A  +F++M+E     +V+  + LID  +K+     A+ ++ E+ E N+ P
Sbjct: 495 CCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEP 554

Query: 131 ------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                          G+  E MQL + M  N   P+ +  +T+ D
Sbjct: 555 TDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLD 599



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +  + L G++  RG+ P++ +Y   I       RL+EA ++  K+     KP+ +T T+L
Sbjct: 223 ETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVL 282

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C  GR+ DA  +F KM     K + VTY  L+D    S + +S  +++  +  +  
Sbjct: 283 IQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGY 342

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           + N+             GR  EA+ ++D M + GI+P
Sbjct: 343 NDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIP 379



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D AL +F ++  +G+ P   +YN++I G+   +R + A++LF  +      PN  T  
Sbjct: 361 RVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHV 420

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + I+   K G    A   +  M  KG   +VV  + ++ G  K+  +  A  V+ E+   
Sbjct: 421 LFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAM 480

Query: 127 NISP-NI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ISP NI           A    EAM+++  M+ N   PD L +++L D
Sbjct: 481 GISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLID 529



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 7/167 (4%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K    + A K+F +L +  LEP   TYNT++ G     ++ E +QL E +      P
Sbjct: 530 MLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPP 589

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N IT+  ++D  CK G ++ A  M   M   G   ++ +Y+ ++ G  K   +  AF ++
Sbjct: 590 NIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMF 649

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            +M +  ++P+ A   T    +  S +R+G+M +   L T+ +Y LQ
Sbjct: 650 CQM-KKVLAPDYATVCT----ILPSFVRSGLMKEA--LHTVREYILQ 689



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 12/177 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A ++  ++ + G +PD++T   +I   C   RL +A  +F K+     KP+ +T+ 
Sbjct: 256 RLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYI 315

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D     G     + +++ +   G   NVV+Y+  +D   +   +  A DV++EM + 
Sbjct: 316 TLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQK 375

Query: 127 NISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            I P        I+G     R   A++L++ M  +G  P+G       +Y+ +S  S
Sbjct: 376 GIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGES 432



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+ E  +D A +LF ++   G +PD  TY+ I+       R+++ +++ E++     K  
Sbjct: 776 LVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKST 835

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I    K   +D+A  ++ +++ +G      TY  L+DG  K  N++ A  +++
Sbjct: 836 YVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFD 895

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM E    PN            IAG   +  +L++SM+  G+ PD
Sbjct: 896 EMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPD 940



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA +L  +  + G+     +YN +ICG    + +D A +LF ++  +   P+  T+ +++
Sbjct: 749 AAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLIL 808

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           DA  K  R++D   +  +M  KG K+  VTY+ +I G  KS+ +  A ++Y ++     S
Sbjct: 809 DAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFS 868

Query: 130 PNIAGRPTEAMQLYDSMLRNGIMPDG 155
           P     P     L D +L++G + D 
Sbjct: 869 PT----PCTYGPLLDGLLKDGNIEDA 890



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F +L   G+ PD ITY  +I      +  DEA+++F ++   +  P+
Sbjct: 461 LAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPD 520

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    LID   K GR ++A  +F ++ E   +    TY+ L+ G  +   +K    + E
Sbjct: 521 VLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLE 580

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            M  N+  PNI             G    A+ +  SM  NG MPD      L+ YN
Sbjct: 581 GMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPD------LSSYN 630



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +++  L   G   ++++Y   +   C + R+DEA+ +F+++    + P   ++  LI  F
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGF 391

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K  R + A  +F+ M   GP  N  T+   I+ + KS     A   YE M    I P++
Sbjct: 392 LKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDV 451

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGL 156
                        GR   A +++  +   GI PD +
Sbjct: 452 VAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNI 487



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           M+IK C    + D A+K+F ++ +    PD++  N++I       R +EA ++F +L  +
Sbjct: 491 MMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM 550

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L+P   T+  L+    +EG++ +   +   M       N++TY+ ++D   K+  +  A
Sbjct: 551 NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYA 610

Query: 117 FDVYEEMCENNISPNIA 133
            D+   M  N   P+++
Sbjct: 611 LDMLYSMTMNGCMPDLS 627



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 65/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A+ ++  +   G+ P + TY+ ++  +      +  V L  ++    ++PN
Sbjct: 181 LVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPN 240

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++TI I    + GR+++A  +  KM E+G K +VVT + LI     +  +  A DV+ 
Sbjct: 241 VYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFW 300

Query: 122 EMCENNISPN 131
           +M  ++  P+
Sbjct: 301 KMKASDQKPD 310



 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYC-----SLNRLDEAVQLFEKLTCVQLKPNSI 63
           + AL+LF  +     +P ++ + T  C Y      +  R+ +  Q+F+ +    +K N  
Sbjct: 82  EEALELFLSVAR---QPRVV-HTTESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVG 137

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  +  A   EG +  A +    M E G   N  TY+ LI    KS   + A DVY+ M
Sbjct: 138 TFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAM 197

Query: 124 CENNISPNI 132
             + + P +
Sbjct: 198 AADGVVPTV 206



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ T+  LI    K G   +A  ++  M   G    V TYS L+  + K ++ ++   + 
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            EM    + PN+            AGR  EA ++   M   G  PD
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPD 275


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A++    +   GL+PD+ TY T+I   C    LD A  L +++    +KP 
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +L++ FC  GR++    +   MLEK    N  TY+ L+  Y    NMKS  ++Y+
Sbjct: 574 IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK 633

Query: 122 EMCENNISPN 131
            MC  N+ PN
Sbjct: 634 GMCSRNVEPN 643



 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 77/130 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  + AA +L  +++++GLE +  TYN++I G C    LD+A++    +    LKP+
Sbjct: 479 LCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPD 538

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LIDA CK G +D A  +  +ML+ G K  +VTY+ L++G+  S  ++    + E
Sbjct: 539 VYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLE 598

Query: 122 EMCENNISPN 131
            M E NI PN
Sbjct: 599 WMLEKNIHPN 608



 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +A + F ++  +GL  D +TY T+I G C    L EA ++ +++   +L  + +T+T+
Sbjct: 380 LVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTV 439

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +CK G+M +A  + + M+++G   NVVTY+ L DG  K  ++++A ++  EM    
Sbjct: 440 LVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  N             AG   +AM+    M   G+ PD    +TL D
Sbjct: 500 LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLID 547



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A ++   +  RG+ P+++TY  +  G C    +  A +L  +++   L+ N+ 
Sbjct: 446 KRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNAC 505

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+  CK G +D A    + M   G K +V TY+ LID   KS  +  A D+ +EM
Sbjct: 506 TYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +N I P I            +GR     +L + ML   I P+    ++L
Sbjct: 566 LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSL 615



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+KL   +  RG+EP+   Y +++   C   R+ +A+ + E +   ++  +   +T 
Sbjct: 310 LENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTT 369

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++  FC +G +  A   F +M  KG   + VTY+ LI+G  ++  +K A  V +EM    
Sbjct: 370 VLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARR 429

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  +              G+  EA Q++++M++ G+ P+ +  + L+D
Sbjct: 430 LDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSD 477



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A K+  ++  R L+ D +TY  ++ GYC   ++ EA Q+   +    + PN
Sbjct: 409 LCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPN 468

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L D  CK+G +  A  +  +M  KG + N  TY+ LI+G  K+  +  A     
Sbjct: 469 VVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMA 528

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M    + P++            +G    A  L   ML NGI P      T+  YN+  +
Sbjct: 529 DMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKP------TIVTYNVLMN 582

Query: 170 G 170
           G
Sbjct: 583 G 583



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 12/177 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  L  ++ D G++P I+TYN ++ G+C   R++   +L E +    + PN
Sbjct: 549 LCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPN 608

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  L+  +C    M   T ++  M  +  + N  TY+ LI G+ K+++MK A   + 
Sbjct: 609 ATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHN 668

Query: 122 EMCENNIS------------PNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           EM E                 N   +  EA +L+  M + G   +  + +   D+N 
Sbjct: 669 EMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNF 725



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 23/160 (14%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++   G+ P     N ++    S   LDEA++LF+ L       N  ++ IL+   C
Sbjct: 222 LLRRVRQYGISPSPEACNAVL----SRLPLDEAIELFQGLP----DKNVCSYNILLKVLC 273

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
             GR++DA  +F +M       +VVTY  LI GY     +++A  + ++M    + PN  
Sbjct: 274 GAGRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNAT 330

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       GR ++A+ + + M+ + ++ D  + +T+
Sbjct: 331 VYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTV 370



 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 59/121 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + +  +++  +  R +EP+  TYN +I G+C    + EA     ++     +  + +++ 
Sbjct: 625 MKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSA 684

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K+ +  +A  +F  M ++G  A    Y+  ID  F   N+++   + +E+ E +
Sbjct: 685 LIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEAS 744

Query: 128 I 128
           I
Sbjct: 745 I 745


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A+++   +   GL+PDI TYN++I G C L  ++EAV++ +++      PN
Sbjct: 318 LCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPN 377

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  +I + CKE R+D+AT +   +  KG   +V T++ LI G   S N KSA D++E
Sbjct: 378 AVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFE 437

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      P+             + +  EA+ L   M  NG   + ++ +TL D
Sbjct: 438 EMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLID 491



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A ++   LT +G+ PD+ T+N++I G C  +    A+ LFE++     +P+
Sbjct: 388 LCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPD 447

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LID+ C   ++++A  +  +M   G   NVV Y+ LIDG+ K++ ++ A ++++
Sbjct: 448 EFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFD 507

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    +S +       I G     R  +A QL D M+  G+ PD    ++L
Sbjct: 508 EMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSL 559



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 86/157 (54%), Gaps = 12/157 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL L  ++   G   +++ YNT+I G+C   R++EA ++F+++    +  +S+T+  
Sbjct: 464 LEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNT 523

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK  R++DA  +  +M+ +G + +  TY+ L+  + K+ ++K A D+ + M  + 
Sbjct: 524 LIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSG 583

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIM 152
            +P+I            AGR   A +L  S+   G++
Sbjct: 584 CNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMV 620



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A ++F ++  +G+  D +TYNT+I G C   R+++A QL +++    L+P+  
Sbjct: 495 KNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKF 554

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE- 122
           T+  L+  FCK G +  A  +   M   G   ++VTY+ LI G  K+  ++ A  +    
Sbjct: 555 TYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI 614

Query: 123 ------MCENNISPNIAG-----RPTEAMQLYDSMLRNGIMPDGL 156
                 +  +  +P I       R  EAM+L+  ML     PD +
Sbjct: 615 QMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAI 659



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+ +  ++   GL PD  T+ TI+ GY     LD A+++ E++        
Sbjct: 213 LCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCT 272

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T  +LI+ FCK+GR+D A     + + +G + +  TY+ L++G  K  + K A +V +
Sbjct: 273 DVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVD 332

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            M    + P+I             G   EA+++ D M+     P+ +
Sbjct: 333 AMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAV 379



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +L  Q+   GL PD  TYN+++  +C    + +A  + + +T     P+
Sbjct: 528 LCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPD 587

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK GR+  A+ +   +  KG       Y+ +I   FK      A  ++ 
Sbjct: 588 IVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFR 647

Query: 122 EMCENNISP-------------NIAGRPTEAMQLYDSMLRNGIMPD 154
           EM + +  P             N  G   EA+     M+  G +P+
Sbjct: 648 EMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPE 693



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 12/149 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +  R +  D+ T+N +I   C  +++  A+ + E++    L P+  TFT ++  + + G 
Sbjct: 194 MVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGN 253

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------ 131
           +D A  +  +M+E G     VT + LI+G+ K   +  A    +E       P+      
Sbjct: 254 LDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNT 313

Query: 132 ------IAGRPTEAMQLYDSMLRNGIMPD 154
                   G    AM++ D+ML  G+ PD
Sbjct: 314 LVNGLCKIGHAKHAMEVVDAMLLGGLDPD 342



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           ++PD   YN ++      N+L         +   +++ +  TF ILI A CK  ++  A 
Sbjct: 164 IKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAI 223

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI----- 132
           +M  +M   G   +  T++ ++ GY +  N+  A  + E+M E      +++ N+     
Sbjct: 224 LMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGF 283

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
              GR  +A+      +  G  PD    +TL +  L   G  +H +
Sbjct: 284 CKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVN-GLCKIGHAKHAM 328


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 19/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT----CVQ 57
           L K   LD A +L GQL + G++ ++ITY+ +I G C  +R+D+A+++F+ ++    CV 
Sbjct: 83  LCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCV- 141

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             P+ +TF  L+   C   RM +A ++F  M + G + NV++YS L+DG  K+  +  A 
Sbjct: 142 --PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++EEM E +  P++            A R  EA      M+  G   D +  ST+
Sbjct: 200 RLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTV 255



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++ + GL PD++TY+ ++ G C L +LD A  L E+++   + P+
Sbjct: 349 LCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPD 408

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T   +++A  K G++D A      M  +G   ++VTY+ L+DG  K+  +  A     
Sbjct: 409 SFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLA 468

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M     +P++            +G+   A  ++  M++ G++PD +L  +L D
Sbjct: 469 KMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLD 522



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL     +  RG  PD++TYNT++ G C   R+DEA+    K+   +  P+
Sbjct: 419 LSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPD 478

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             ++TI+I A C+ G+   A  +F +M+++G   + V Y  L+DG
Sbjct: 479 VFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDG 523



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A  LF  +   G EP++I+Y+T++ G C   RLDEA +L+E++      P+ + +T
Sbjct: 159 RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYT 218

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCE 125
             +   CK  R+ +A     KM+ KG KA+ V +S +I    K  + + A + + E +C 
Sbjct: 219 SFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCR 278

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +       G   EA + ++ M+     P   L +TL
Sbjct: 279 S-------GMLDEACKTFEEMISRNHPPSAELFNTL 307



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 14/178 (7%)

Query: 12  LKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++LF  L   +G +  + TYN  +      N    A + F+++      P+  T++I++ 
Sbjct: 22  VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-NNIS 129
             CK G +D A  +  ++ E G K NV+TYS +IDG  K+  +  A ++++ M       
Sbjct: 82  GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCV 141

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           P++              R +EA  L++ M + G  P+ +  STL D   ++    E C
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L+ ++ ++   PD++ Y + + G C  NR+ EA     K+     K +
Sbjct: 189 LCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKAD 248

Query: 62  SITFTILIDAFCKEGR-----------------MDDATMMFSKMLEKGPKANVVTYSCLI 104
           ++ F+ +I   CK+G                  +D+A   F +M+ +    +   ++ LI
Sbjct: 249 AVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLI 308

Query: 105 DGYFKSQNMKSA---FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRN 149
               KS+ +      F   + M E    PN+            A +  EA +L + M   
Sbjct: 309 HAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANY 368

Query: 150 GIMPDGLLLSTLAD 163
           G+ PD +  S L D
Sbjct: 369 GLSPDVVTYSALVD 382



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A  +F ++  RG+ PD + Y++++ G       D A++L +   C   KP+ +   +++
Sbjct: 497 GAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLC---KPDFVMHKMVL 553

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D  CK G+ +DA  +  +M + G  A+  TY  ++ G  K   +  A  + ++  E + S
Sbjct: 554 DGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASETHTS 613


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 27/186 (14%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  L +RG+ PD+ITY  +I GYC +N L EA  +F  +    +KP+ IT+T+++D   
Sbjct: 630 VFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHS 689

Query: 74  K---------------EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           K               E    DA+  +S+M E G K +VV Y+ LID + K+ N++ A +
Sbjct: 690 KVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAIN 749

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           +Y+EM    + P+I             G    A+ L + M   GI PD   +S L    L
Sbjct: 750 LYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMSVLHRGIL 809

Query: 167 QSSGSQ 172
           ++   Q
Sbjct: 810 KARKVQ 815



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 72/122 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF +L+ +G+     +   ++   C     D+A+ L E++  + ++PN I +  LI 
Sbjct: 557 AYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIG 616

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFC++G M  A ++F  ++E+G   +V+TY+ +I+GY +   ++ A D++ +M E  I P
Sbjct: 617 AFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKP 676

Query: 131 NI 132
           ++
Sbjct: 677 DV 678



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 69/119 (57%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F +  D G+  D + YN ++   C L +++EAV+L  ++   ++  + + +T LI  +C 
Sbjct: 390 FKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCL 449

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           +G++ DA  MF +M E+G + ++VTY+ L+ G+ ++   K A ++ + +    + PN A
Sbjct: 450 QGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSA 508



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 29/185 (15%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E   D AL L  ++    +EP+ I Y  +I  +C    +  A  +F+ L    + P+ IT
Sbjct: 586 EGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVIT 645

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV----- 119
           +T++I+ +C+   + +A  +F+ M E+G K +V+TY+ ++DG+ K  N+K A  +     
Sbjct: 646 YTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKV-NLKMARSLQFSKG 704

Query: 120 -----------YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
                      + EM E  I P++                 +A+ LYD M+  G+ PD +
Sbjct: 705 SEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIV 764

Query: 157 LLSTL 161
             + L
Sbjct: 765 TYTAL 769



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI+   +D A+ ++  L   GL P+  TY   I   C     +EAV +F ++    + PN
Sbjct: 202 LIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPN 261

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T +  I+  C   R D        +       +   Y+ +I G+     +K A DV+ 
Sbjct: 262 AVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFI 321

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    I+P+             AG   +A+ L++ M+ NGI  + +++S++
Sbjct: 322 DMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSI 373



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 24/160 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQL--------------FEK 52
           L  A  +F  + +RG++PD+ITY  ++ G+  +N ++  ++Q               + +
Sbjct: 659 LREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSE 718

Query: 53  LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           +  + +KP+ + +T+LID+ CK   + DA  ++ +M+ +G + ++VTY+ L+       +
Sbjct: 719 MKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGD 778

Query: 113 MKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIM 152
           M  A  +  EM    I P+     + AM    S+L  GI+
Sbjct: 779 MDRAITLVNEMSFKGIEPD-----SRAM----SVLHRGIL 809



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++ + + A+ +F ++ + G+ P+ +T +T I G CS  R D   +    L       +
Sbjct: 237 LCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPID 296

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +T +I  FC E ++ +A  +F  M+ +G   +   Y  LI  Y K+ N+  A  ++ 
Sbjct: 297 TFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHN 356

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  N I  N              G  +E +  +     +GI  D +L + + D
Sbjct: 357 DMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVD 410



 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A++L  ++  R +  D++ Y T+I GYC   +L +A  +FE++    ++P+
Sbjct: 412 LCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPD 471

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA---FD 118
            +T+ IL+  F + G   +A  +   +  +G K N  T++ +I+G   +  +K A    +
Sbjct: 472 IVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLN 531

Query: 119 VYEEMCENNISPNIAGR-----PTEAMQLYDSMLRNGIM 152
             E+ C  N S  + G        +A +L+  + + GI+
Sbjct: 532 TLEDKCLENYSAMVDGYCKANFTRKAYELFSRLSKQGIL 570



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A+ L   +   G++ + +  ++I+   C +    E V  F++     +  + +
Sbjct: 344 KAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEV 403

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            + I++DA CK G++++A  + ++M  +    +VV Y+ LI GY     +  A +++EEM
Sbjct: 404 LYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEM 463

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            E  I P+I             G   EA++L D +   G+ P+
Sbjct: 464 KERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPN 506



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +DA+   + ++ + G++PD++ Y  +I  +C  N L +A+ L++++    L+P+ +
Sbjct: 706 EEEKMDAS-PFWSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIV 764

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           T+T L+ + C  G MD A  + ++M  KG + +    S L  G  K++ ++
Sbjct: 765 TYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMSVLHRGILKARKVQ 815



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 47/105 (44%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           I+  + ++  Y  +   DEA+    +       P+ ++   L++   + G++D A  ++ 
Sbjct: 157 ILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYR 216

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            +   G   N  TY   I    +  N + A DV+ EM E  ++PN
Sbjct: 217 HLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPN 261


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  L  ++++ G+ PD+ TY  +I G C + R+++A  +FEK+    +KPN++ FTI
Sbjct: 291 LDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 350

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA CK+G  +    +  +M E+G + + VTY+ +++G  +++++KSA  +  EM    
Sbjct: 351 LIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 410

Query: 128 ISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGLLLSTL 161
           + P+       I G   E     AM++  +M+  G+  D +  + L
Sbjct: 411 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 456



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L +A  +F ++  RG+   ++++NT+I G C    LD A  L  +++   + P+
Sbjct: 250 LVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPD 309

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   C+ GR++DA  +F KM  +G K N V ++ LID + K  + ++  +++ 
Sbjct: 310 VYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHR 369

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E  + P+             A     A  +   M   G+ PD +  +TL D
Sbjct: 370 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLID 423



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 4/155 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   +  L+L  ++ +RG+ PD +TYN I+ G C    L  A  +  ++    L+P+++
Sbjct: 357 KKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTV 416

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID +CKE  +D A  +   M+ +G   + VTY+ LI G  K+     A  V  EM
Sbjct: 417 TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEM 476

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            E  + P+     T    + D+  R G +  GL L
Sbjct: 477 MEAGLEPD----NTTYTMVIDAFCRKGDVKTGLRL 507



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +A  +  ++   GL PD +TY T+I GYC    LD A+++ + +    +  + +T+T 
Sbjct: 396 LKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTA 455

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K GR  DA  +  +M+E G + +  TY+ +ID + +  ++K+   + +EM    
Sbjct: 456 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 515

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P +             G+   A  L ++M+  G+ PD +  + L D
Sbjct: 516 RKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLD 563



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 71/128 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A+++   +   G+  D +TY  +I G     R  +A ++  ++    L+P++ 
Sbjct: 427 KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNT 486

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T++IDAFC++G +     +  +M  KG K  VVTY+ +++G+ K   MK+A  +   M
Sbjct: 487 TYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAM 546

Query: 124 CENNISPN 131
               +SP+
Sbjct: 547 INIGVSPD 554



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   + QL D GL P+   +N ++     L  L  A  +F+++    ++   ++F  +I 
Sbjct: 224 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 283

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ G +D A  +  +M E G   +V TY  LI G  +   ++ A  V+E+MC   + P
Sbjct: 284 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 343

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N              G     ++L+  M   G+ PD +  + + +
Sbjct: 344 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVN 388



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 59/99 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++ G++ + GLEPD  TY  +I  +C    +   ++L +++     KP  +T+ ++++
Sbjct: 469 AERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMN 528

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            FCK G+M +A M+ + M+  G   + +TY+ L+DG+ K
Sbjct: 529 GFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCK 567



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +   L+L  ++ ++G +P ++TYN I+ G+C L ++  A  L   +  + + P+ IT+ I
Sbjct: 501 VKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNI 560

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           L+D  CK G++ D   + S    KG   ++  Y+ ++    K +  K+  D
Sbjct: 561 LLDGHCKHGKVTDIEELKSA---KGTVPDLGVYTSIVGEIVKKKTTKTYHD 608


>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
 gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
 gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
          Length = 535

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LDAALK+  ++   G+ PD++TY T++  YC    ++ A +LF+ +     +P+   +T+
Sbjct: 209 LDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTV 268

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +C+ G + DA  +  +M     + N VTYS +I+   K +    A D   EM    
Sbjct: 269 LIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLGAG 328

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             P+ A            G+  EA QL+  M +  + PD ++ STL
Sbjct: 329 YVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTL 374



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + P++++ N ++ G   +  LD A+++ +++  + + P+ +T+T ++ A+C +G ++ A 
Sbjct: 189 ITPNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQ 248

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG-------- 134
            +F  ++  G + +V  Y+ LIDGY +  N++ A  + +EM    + PN           
Sbjct: 249 KLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEAC 308

Query: 135 ----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
               +P EA      ML  G +PD  L + + D   Q   S+E
Sbjct: 309 CKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEE 351



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 13/154 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PD      ++   C   + +EA QL+  +    + P+++  + LI   CK G + +A
Sbjct: 328 GYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREA 387

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +F + LE+G K +++TY+ LI G  +++ ++ A  V+++M E    PN          
Sbjct: 388 RNLFDE-LERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKG 446

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               G+P E   +++ M+  G  P  LL   L D
Sbjct: 447 LCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVD 480



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 1/104 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  LF +L +RG +P ++TYN++I G C    L EA ++++ +     +PN
Sbjct: 378 LCKNGMVREARNLFDEL-ERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPN 436

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           ++T+  LI   CK G+ ++   +F +M+ +G K + + +  L+D
Sbjct: 437 AMTYEALIKGLCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVD 480



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +++  + +RG EP+ +TY  +I G C   + +E   +FE++     KP+S+ F +
Sbjct: 418 LQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTGKPNEGATVFEEMVSRGCKPSSLLFQV 477

Query: 68  LIDAFCKEGRMDDATMMFSKMLE 90
           L+D+   E R +D      K+LE
Sbjct: 478 LVDSL-SEPRHEDT---IRKILE 496


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 19/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT----CVQ 57
           L K   LD A +L GQL + G++ ++ITY+ +I G C  +R+D+A+++F+ ++    CV 
Sbjct: 83  LCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCV- 141

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             P+ +TF  L+   C   RM +A ++F  M + G + NV++YS L+DG  K+  +  A 
Sbjct: 142 --PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++EEM E +  P++            A R  EA      M+  G   D +  ST+
Sbjct: 200 RLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTV 255



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++ + GL PD++TY+ ++ G C L +LD A  L E+++   + P+
Sbjct: 349 LCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPD 408

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T   +++A  K G++D A      M  +G   ++VTY+ L+DG  K+  +  A     
Sbjct: 409 SFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLA 468

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M     +P++            +G+   A  ++  M++ G++PD +L  +L D
Sbjct: 469 KMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLD 522



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 59/105 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL     +  RG  PD++TYNT++ G C   R+DEA+    K+   +  P+
Sbjct: 419 LSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPD 478

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             ++TI+I A C+ G+   A  +F +M+++G   + V Y  L+DG
Sbjct: 479 VFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDG 523



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A  LF  +   G EP++I+Y+T++ G C   RLDEA +L+E++      P+ + +T
Sbjct: 159 RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYT 218

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCE 125
             +   CK  R+ +A     KM+ KG KA+ V +S +I    K  + + A + + E +C 
Sbjct: 219 SFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCR 278

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +       G   EA + ++ M+     P   L +TL
Sbjct: 279 S-------GMLDEACKTFEEMISRNHPPSAELFNTL 307



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 14/178 (7%)

Query: 12  LKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++LF  L   +G +  + TYN  +      N    A + F+++      P+  T++I++ 
Sbjct: 22  VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-NNIS 129
             CK G +D A  +  ++ E G K NV+TYS +IDG  K+  +  A ++++ M       
Sbjct: 82  GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCV 141

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           P++              R +EA  L++ M + G  P+ +  STL D   ++    E C
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEAC 199



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L+ ++ ++   PD++ Y + + G C  NR+ EA     K+     K +
Sbjct: 189 LCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKAD 248

Query: 62  SITFTILIDAFCKEGR-----------------MDDATMMFSKMLEKGPKANVVTYSCLI 104
           ++ F+ +I   CK+G                  +D+A   F +M+ +    +   ++ LI
Sbjct: 249 AVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLI 308

Query: 105 DGYFKSQNMKSA---FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRN 149
               KS+ +      F   + M E    PN+            A +  EA +L + M   
Sbjct: 309 HAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANY 368

Query: 150 GIMPDGLLLSTLAD 163
           G+ PD +  S L D
Sbjct: 369 GLSPDVVTYSALVD 382



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A  +F ++  RG+ PD + Y++++ G       D A++L +   C   KP+ +   +++
Sbjct: 497 GAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLC---KPDFVMHKMVV 553

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           D  CK G+ +DA  +  +M + G  A+  TY  ++ G  K   +  A  + ++  E + S
Sbjct: 554 DGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASETHTS 613


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A     ++  RGL+PD  TY+ +ICG  ++N+++EA+Q ++      + P+  T+++
Sbjct: 569 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSV 628

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK  R ++    F +M+ K  + N V Y+ LI  Y +S  +  A ++ E+M    
Sbjct: 629 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 688

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ISPN            I  R  EA  L++ M   G+ P+    + L D
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 736



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 12/143 (8%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD+  + T I  +C   +++EAV+LF K+    + PN +TF  +ID     GR D+
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 326

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A M   KM+E+G +  ++TYS L+ G  +++ +  A+ V +EM +    PN+        
Sbjct: 327 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 386

Query: 133 ----AGRPTEAMQLYDSMLRNGI 151
               AG   +A+++ D M+  G+
Sbjct: 387 SFIEAGSLNKAIEIKDLMVSKGL 409



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           + F ++  + ++P+ + YN +I  YC   RL  A++L E +    + PNS T+T LI   
Sbjct: 644 EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 703

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
               R+++A ++F +M  +G + NV  Y+ LIDGY K   M     +  EM   N+ PN 
Sbjct: 704 SIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK 763

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                        G  TEA +L + M   GI+PD +         L+  G  E
Sbjct: 764 ITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLE 816



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A ++  ++  RG   D ++YNT+I G C   +LDEA    +++    LKP++ T++I
Sbjct: 534 LDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 593

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI       ++++A   +      G   +V TYS +IDG  K++  +   + ++EM   N
Sbjct: 594 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 653

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN             +GR + A++L + M   GI P+    ++L
Sbjct: 654 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 699



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 71/122 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+KLF ++ + G+ P+++T+NT+I G     R DEA    EK+    ++P  IT++I
Sbjct: 289 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 348

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+    +  R+ DA  +  +M +KG   NV+ Y+ LID + ++ ++  A ++ + M    
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 408

Query: 128 IS 129
           +S
Sbjct: 409 LS 410



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 15/170 (8%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C+L  AL +F  L ++G+ P   T N ++      N   +  + F+ + C  + P+   F
Sbjct: 220 CYL--ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLF 276

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T  I+AFCK G++++A  +FSKM E G   NVVT++ +IDG         AF   E+M E
Sbjct: 277 TTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE 336

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + P +            A R  +A  +   M + G  P+ ++ + L D
Sbjct: 337 RGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 386



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  AL+L   +  +G+ P+  TY ++I G   ++R++EA  LFE++    L+PN   +T
Sbjct: 673 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K G+M     +  +M  K    N +TY+ +I GY +  N+  A  +  EM E 
Sbjct: 733 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 792

Query: 127 NISPN 131
            I P+
Sbjct: 793 GIVPD 797



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL+L+ Q  ++G   D  T N ++ G C   +LDEA ++ +++       +
Sbjct: 493 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD 552

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LI   C + ++D+A M   +M+++G K +  TYS LI G F    ++ A   ++
Sbjct: 553 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWD 612

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +   N + P++            A R  E  + +D M+   + P+ ++ + L
Sbjct: 613 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 664



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  LF ++   GLEP++  Y  +I GY  L ++ +   L  ++    + PN IT+T
Sbjct: 708 RVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 767

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++I  + ++G + +A+ + ++M EKG   + +TY   I GY K   +  AF   +E
Sbjct: 768 VMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 823



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D+AL+  G++  R + P      T+I G C   +  +A++L+ +        ++ T   
Sbjct: 464 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 523

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C+ G++D+A  +  ++L +G   + V+Y+ LI G    + +  AF   +EM +  
Sbjct: 524 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 583

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+       I G     +  EA+Q +D   RNG++PD    S + D
Sbjct: 584 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID 631



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A     ++ +RG+EP +ITY+ ++ G     R+ +A  + +++T     PN I +  L
Sbjct: 325 DEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 384

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID+F + G ++ A  +   M+ KG      TY+ LI GY K+    +A  + +EM     
Sbjct: 385 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 444

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + N     +             A++    ML   + P G LL+TL
Sbjct: 445 NVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTL 489



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A +L  ++   G   +  ++ ++IC  CS    D A++   ++    + P   
Sbjct: 425 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 484

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             T LI   CK G+   A  ++ + L KG   +  T + L+ G  ++  +  AF + +E+
Sbjct: 485 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 544

Query: 124 -----CENNISPN--IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  + +S N  I+G     +  EA    D M++ G+ PD    S L
Sbjct: 545 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 594


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+ + Y T++ GYC + R+DE + LF ++    +KP++I + I
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 609

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   + GR   A + F +M E G   N  TY+ ++ G FK++    A  +++E+   N
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           +  N       IAG     R  EA  L+ S+ R+G++P
Sbjct: 670 VKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 707



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 73/121 (60%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + GL P  + Y+ ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 518 AQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVN 577

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML+KG K + + Y+ +IDG F++     A   + EM E+ I+ 
Sbjct: 578 GYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM 637

Query: 131 N 131
           N
Sbjct: 638 N 638



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 47/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ +F ++ D G++PD++TY T+I   C + ++D+A++ F ++    + P+   +  
Sbjct: 410 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 68  LIDAFC-----------------------------------KEGRMDDATMMFSKMLEKG 92
           LI  FC                                   K GR+ DA  +F   +  G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
                V YS L+DGY     M+ A  V++ M    I PN              GR  E +
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
            L+  ML+ GI P  +L + + D
Sbjct: 590 SLFREMLQKGIKPSTILYNIIID 612



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A     Q+ ++G+ P+  TYN +I GY S  +  EAV++F+++    + P+
Sbjct: 264 LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T ++L+ + CK G++ +A  +F  M  KG   NV +Y+ +++GY     +    D+++
Sbjct: 324 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFD 383

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  + I+P+I             G   +AM +++ M  +G+ PD +   T+
Sbjct: 384 LMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 435



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C +D    LF  +   G+ PDI T+N +I  Y +   LD+A+ +F ++    +KP+ +
Sbjct: 372 KGCLVDMT-DLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 430

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I A C+ G+MDDA   F++M+++G   +   Y CLI G+    ++  A ++  E+
Sbjct: 431 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEI 490

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N +  +I             GR  +A  ++D  +  G+ P  ++ S L D
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMD 542



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 22/184 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFT 66
           AL  FGQL   GL  +II  N ++ G+C   R DEA+ +      +L CV   P+  +++
Sbjct: 130 ALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCV---PDVFSYS 186

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           IL+ + C +G+   A  +   M E G     +VV YS +IDG+FK  ++  A D+++EM 
Sbjct: 187 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMV 246

Query: 125 ENNISPNIAGRPT--------EAMQLYDSMLR----NGIMPDGLLLSTLADYNLQSSGSQ 172
           +  I P+     +         AM   ++ LR     G++P+    + L  Y   S+G  
Sbjct: 247 QRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI-YGYSSTGQW 305

Query: 173 EHCI 176
           +  +
Sbjct: 306 KEAV 309



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G+  DI+ +++II   C L R+ +A  +F+    V L P ++ +++L+D
Sbjct: 483 AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMD 542

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+M+ A  +F  M+  G + N V Y  L++GY K   +     ++ EM +  I P
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602

Query: 131 NI------------AGRPTEAMQLYDSMLRNGI 151
           +             AGR   A   +  M  +GI
Sbjct: 603 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 635



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  ++ A  LF ++  RG+ PD +TY++++   C    +D+A     ++    + PN
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPN 288

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  +   G+  +A  +F +M       +VVT S L+    K   +K A DV++
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 348

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M     +PN+             G   +   L+D ML +GI PD
Sbjct: 349 TMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 393



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++ Y+T+I G+     +++A  LF+++    + P+ +T++ ++ A CK   MD A   
Sbjct: 217 PDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAF 276

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M+ KG   N  TY+ LI GY  +   K A  V++EM  ++I P++            
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G+  EA  ++D+M   G  P+
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPN 358



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +F  +  +G  P++ +Y  ++ GY +   L +   LF+ +    + P+
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 393

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF +LI A+   G +D A ++F++M + G K +VVTY  +I    +   M  A + + 
Sbjct: 394 IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 453

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +  ++P+              G   +A +L   ++ NG+  D +  S++
Sbjct: 454 QMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 505



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ +IIT NT+I G     R++EA  LF  ++   L P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++I+I    KEG +++A  MFS M   G + +    + ++    K   +  A     
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 769 KIDERNFS 776



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  +  TYN ++ G       DEA+ LF++L  + +K N IT   +I    +
Sbjct: 627 FHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQ 686

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +   G    VVTYS +I    K   ++ A D++  M      P+
Sbjct: 687 TRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743



 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P S T+ IL+D   +  R + A   F ++L  G + N++  + L+ G+ +++    A 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 118 DV 119
           D+
Sbjct: 167 DI 168


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F Q  D    P+++TY  ++ G+C  +R++EA +L + ++    +PN I +  LID  CK
Sbjct: 586 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 645

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
            G++D+A  + ++M E G  A + TYS LID YFK +    A  V  +M EN+ +PN+  
Sbjct: 646 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 705

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      G+  EA +L   M   G  P+ +  + + D
Sbjct: 706 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 746



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  +  ++  +G  PD  TY+ ++   C+ ++++ A  LFE++    L  +  T+TI+
Sbjct: 424 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 483

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +D+FCK G ++ A   F++M E G   NVVTY+ LI  Y K++ +  A +++E M     
Sbjct: 484 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 543

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            PNI            AG+  +A Q+++ M  +  +PD
Sbjct: 544 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 581



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 28/184 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  LF ++   GL  D+ TY  ++  +C    +++A + F ++  V   PN +T+T 
Sbjct: 458 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 517

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--- 124
           LI A+ K  ++  A  +F  ML +G   N+VTYS LIDG+ K+  ++ A  ++E MC   
Sbjct: 518 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 577

Query: 125 -------------ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
                        +N+  PN+            + R  EA +L D+M   G  P+ ++  
Sbjct: 578 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 637

Query: 160 TLAD 163
            L D
Sbjct: 638 ALID 641



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A ++  ++++ G    + TY+++I  Y  + R D A ++  K+      PN
Sbjct: 643 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 702

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T +ID  CK G+ D+A  +   M EKG + NVVTY+ +IDG+     +++  ++ E
Sbjct: 703 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLE 762

Query: 122 EMCENNISPN 131
            M    ++PN
Sbjct: 763 RMGSKGVAPN 772



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A KL   ++  G EP+ I Y+ +I G C + +LDEA ++  +++         
Sbjct: 610 KSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLY 669

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LID + K  R D A+ + SKMLE     NVV Y+ +IDG  K      A+ + + M
Sbjct: 670 TYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM 729

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            E    PN+             G+    ++L + M   G+ P+ +    L D+
Sbjct: 730 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDH 782



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 66/126 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+  ++ +    P+++ Y  +I G C + + DEA +L + +     +PN +T+T +
Sbjct: 685 DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAM 744

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F   G+++    +  +M  KG   N VTY  LID   K+  +  A ++ EEM + + 
Sbjct: 745 IDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHW 804

Query: 129 SPNIAG 134
             + AG
Sbjct: 805 PTHTAG 810



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A K + ++   G+  + I  ++     CS  + ++A  +  ++      P++ T++ 
Sbjct: 388 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 447

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  C   +M+ A ++F +M   G  A+V TY+ ++D + K+  ++ A   + EM E  
Sbjct: 448 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 507

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            A + + A +L+++ML  G +P+ +  S L D + ++   ++ C
Sbjct: 508 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 567



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A KL   + ++G +P+++TY  +I G+  + +++  ++L E++    + PN +T+ +L
Sbjct: 720 DEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVL 779

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  CK G +D A  +  +M +     +   Y  +I+G+  ++    +  + +E+ +++ 
Sbjct: 780 IDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDT 837

Query: 129 SP 130
           +P
Sbjct: 838 AP 839



 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+  G+L D    P   TYN +I  +   +RLD A  +  +++   L+ +  T      
Sbjct: 178 ALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAY 237

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK G+  +A  +      +    + V Y+ LI G  ++   + A D    M   +  P
Sbjct: 238 SLCKVGKWREALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 294

Query: 131 NIAGRPT 137
           N+    T
Sbjct: 295 NVVTYST 301



 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+    ++      P+++TY+T++CG  +  +L    ++   +      P+   F  
Sbjct: 277 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 336

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN------MKSAFDVYE 121
           L+ A+C  G    A  +  KM++ G     V Y+ LI      ++      +  A   Y 
Sbjct: 337 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYS 396

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    +  N             AG+  +A  +   M+  G +PD    S + +Y
Sbjct: 397 EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNY 451



 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--VQLKPNSITFTIL 68
           +L L  ++      P +  Y  +I       RL+ A++L E++      L   S T+  L
Sbjct: 825 SLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSL 884

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           I++ C   +++ A  +FS+M +KG    + ++  LI G F++  +  A 
Sbjct: 885 IESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL 933



 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/101 (18%), Positives = 47/101 (46%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD + Y  +I G C  +  +EA+    ++      PN +T++ L+     + ++     +
Sbjct: 259 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 318

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            + M+ +G   +   ++ L+  Y  S +   A+ + ++M +
Sbjct: 319 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK 359



 Score = 35.8 bits (81), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 2   LIKECHLDAALKLFGQLT--DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           LIK   L+ AL+L  ++      L     TYN++I   C  N+++ A QLF ++T   + 
Sbjct: 851 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVI 910

Query: 60  PNSITFTILIDAFCKEGRMDDATMMF 85
           P   +F  LI    +  ++ +A ++ 
Sbjct: 911 PEMQSFCSLIKGLFRNSKISEALLLL 936


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A     ++  RGL+PD  TY+ +ICG  ++N+++EA+Q ++      + P+  T+++
Sbjct: 556 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSV 615

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK  R ++    F +M+ K  + N V Y+ LI  Y +S  +  A ++ E+M    
Sbjct: 616 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 675

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ISPN            I  R  EA  L++ M   G+ P+    + L D
Sbjct: 676 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 723



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 12/143 (8%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD+  + T I  +C   +++EAV+LF K+    + PN +TF  +ID     GR D+
Sbjct: 254 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 313

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A M   KM+E+G +  ++TYS L+ G  +++ +  A+ V +EM +    PN+        
Sbjct: 314 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 373

Query: 133 ----AGRPTEAMQLYDSMLRNGI 151
               AG   +A+++ D M+  G+
Sbjct: 374 SFIEAGSLNKAIEIKDLMVSKGL 396



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           + F ++  + ++P+ + YN +I  YC   RL  A++L E +    + PNS T+T LI   
Sbjct: 631 EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 690

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
               R+++A ++F +M  +G + NV  Y+ LIDGY K   M     +  EM   N+ PN 
Sbjct: 691 SIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK 750

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                        G  TEA +L + M   GI+PD +         L+  G  E
Sbjct: 751 ITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLE 803



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A ++  ++  RG   D ++YNT+I G C   +LDEA    +++    LKP++ T++I
Sbjct: 521 LDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 580

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI       ++++A   +      G   +V TYS +IDG  K++  +   + ++EM   N
Sbjct: 581 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 640

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN             +GR + A++L + M   GI P+    ++L
Sbjct: 641 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 686



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 71/122 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+KLF ++ + G+ P+++T+NT+I G     R DEA    EK+    ++P  IT++I
Sbjct: 276 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 335

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+    +  R+ DA  +  +M +KG   NV+ Y+ LID + ++ ++  A ++ + M    
Sbjct: 336 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 395

Query: 128 IS 129
           +S
Sbjct: 396 LS 397



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 15/170 (8%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C+L  AL +F  L ++G+ P   T N ++      N   +  + F+ + C  + P+   F
Sbjct: 207 CYL--ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLF 263

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T  I+AFCK G++++A  +FSKM E G   NVVT++ +IDG         AF   E+M E
Sbjct: 264 TTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE 323

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + P +            A R  +A  +   M + G  P+ ++ + L D
Sbjct: 324 RGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 373



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  AL+L   +  +G+ P+  TY ++I G   ++R++EA  LFE++    L+PN   +T
Sbjct: 660 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 719

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K G+M     +  +M  K    N +TY+ +I GY +  N+  A  +  EM E 
Sbjct: 720 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 779

Query: 127 NISPN 131
            I P+
Sbjct: 780 GIVPD 784



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL+L+ Q  ++G   D  T N ++ G C   +LDEA ++ +++       +
Sbjct: 480 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD 539

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LI   C + ++D+A M   +M+++G K +  TYS LI G F    ++ A   ++
Sbjct: 540 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWD 599

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +   N + P++            A R  E  + +D M+   + P+ ++ + L
Sbjct: 600 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 651



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  LF ++   GLEP++  Y  +I GY  L ++ +   L  ++    + PN IT+T
Sbjct: 695 RVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 754

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++I  + ++G + +A+ + ++M EKG   + +TY   I GY K   +  AF   +E
Sbjct: 755 VMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 810



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D+AL+  G++  R + P      T+I G C   +  +A++L+ +        ++ T   
Sbjct: 451 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 510

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C+ G++D+A  +  ++L +G   + V+Y+ LI G    + +  AF   +EM +  
Sbjct: 511 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 570

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+       I G     +  EA+Q +D   RNG++PD    S + D
Sbjct: 571 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID 618



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A     ++ +RG+EP +ITY+ ++ G     R+ +A  + +++T     PN I +  L
Sbjct: 312 DEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 371

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID+F + G ++ A  +   M+ KG      TY+ LI GY K+    +A  + +EM     
Sbjct: 372 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 431

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + N     +             A++    ML   + P G LL+TL
Sbjct: 432 NVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTL 476



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A +L  ++   G   +  ++ ++IC  CS    D A++   ++    + P   
Sbjct: 412 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 471

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             T LI   CK G+   A  ++ + L KG   +  T + L+ G  ++  +  AF + +E+
Sbjct: 472 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 531

Query: 124 -----CENNISPN--IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  + +S N  I+G     +  EA    D M++ G+ PD    S L
Sbjct: 532 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 581


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+ L  ++  +G  PDI +YNTII   C+  +++EA  +FE L    +  N
Sbjct: 410 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVAN 469

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  +I A  ++GR  DA  +  +M+  G   +VV+Y+ LI    K  N+  +  + E
Sbjct: 470 GITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLE 529

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  I PN               R  +A++L   ML  G+ PD +  +TL
Sbjct: 530 EMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL 581



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  L  A +L+  +  +G +PD  TY+ ++ G C L R+  AV+L  ++      PN 
Sbjct: 306 LAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNV 365

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+TI++ +FCK G  DD   +  +M  KG   N   Y+ +I    K   M  A  + +E
Sbjct: 366 VTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 425

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           M     +P+I    T            EA  +++++L  G++ +G+  +T+
Sbjct: 426 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTI 476



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 76/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+++     A++L  ++   G   D+++YN +I   C    +D ++ L E++    +KPN
Sbjct: 480 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 539

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++ ILI   CKE R+ DA  +  +ML +G   ++VTY+ LI+G  K   M +A ++ E
Sbjct: 540 NVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLE 599

Query: 122 EMCENNISPNI 132
           ++   N+ P+I
Sbjct: 600 KLHNENVHPDI 610



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 54/88 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  AL+L  Q+ ++GL PDI+TYNT+I G C +  +  A+ L EKL    + P+
Sbjct: 550 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 609

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML 89
            IT+ ILI   CK   +DDA M+ ++ +
Sbjct: 610 IITYNILISWHCKVRLLDDAAMLLNRAM 637



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + +A++L  ++  +G  P+++TY  ++  +C     D+   L E+++   L  N
Sbjct: 340 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S  +  +I A CK+GRMD+A  +  +M  +G   ++ +Y+ +I     ++ M+ A  ++E
Sbjct: 400 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 459

Query: 122 EMCE-----NNISPNIA-------GRPTEAMQLYDSMLRNGIMPD-----GLLLSTLADY 164
            + E     N I+ N         GR  +A++L   M+ +G   D     GL+ +   D 
Sbjct: 460 NLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDG 519

Query: 165 NLQSS 169
           N+  S
Sbjct: 520 NVDRS 524



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 16/158 (10%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  + G++     E +++ +NT+I G  +  +L EA +L+E +     +P++ T++IL
Sbjct: 281 DEARAMLGRVP----ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 336

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   CK GR+  A  +  +M +KG   NVVTY+ ++  + K+        + EEM    +
Sbjct: 337 MHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 396

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + N              GR  EAM L   M   G  PD
Sbjct: 397 TLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 434



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 66/115 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+ ++D +L L  ++ ++G++P+ ++YN +I   C   R+ +A++L +++    L P+
Sbjct: 515 MCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 574

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            +T+  LI+  CK G M  A  +  K+  +    +++TY+ LI  + K + +  A
Sbjct: 575 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDA 629



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL L   +   G  PD + Y T+I   C    + EA  L  ++  +    +  TF  +
Sbjct: 176 DEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDV 235

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN- 127
           +   C  GR+ +A  +  +M+ KG    V+TY  L+ G  + +    A  +   + E N 
Sbjct: 236 VRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNV 295

Query: 128 ------ISPNIA-GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 I   +A G+  EA +LY++M   G  PD    S L
Sbjct: 296 VLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 336



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 27/141 (19%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P   T+       C L R DEA+ L   +      P+++ +  +I A C +G + +A  +
Sbjct: 157 PTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 216

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144
            ++ML  G  A+V T+                 DV   MC         GR  EA +L D
Sbjct: 217 LNEMLLMGCAADVNTFD----------------DVVRGMCG-------LGRVREAARLVD 253

Query: 145 SMLRNGIMPD----GLLLSTL 161
            M+  G MP     G LL  L
Sbjct: 254 RMMTKGCMPGVMTYGFLLQGL 274


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   + + GLEP+++ YNT+I G C    L+ A+++F  +    +  +++T+  LI 
Sbjct: 704 AVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLIS 763

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR  DA  +   M+++    NV+ ++ LID + K  N+  A ++Y+EM   ++ P
Sbjct: 764 GLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHP 823

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N            I GR  +A  ++D M+  G  PD +  +TL
Sbjct: 824 NILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTL 866



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 89/171 (52%), Gaps = 9/171 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+ +LD A +L+ Q+    + P+ +TYN++I G C   RL  A + F+ +      PN
Sbjct: 251 FVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPN 310

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+ FCK  R++D   +F +M  +G   +  TY+ LI GY +   ++ A D++ 
Sbjct: 311 VVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFS 370

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            M    ++P+I         +   +L +G+  +G + S +  +N   SG +
Sbjct: 371 WMVSCGVTPDI---------ITHCILLHGLCVNGEIGSAMVKFNDMRSGEK 412



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L G++   G +P I+T  +++ G+C  NR  EAV L + +  + L+PN + +  +I+
Sbjct: 669 ALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVIN 728

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   +++A  +F  M +KG  A+ VTY+ LI G   S     A  +  +M +  I P
Sbjct: 729 GLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDP 788

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G   EA  LY  M+R  + P+ L  ++L +
Sbjct: 789 NVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLIN 833



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   ++ AL+L  ++  +G L  D++TYNT++ G C      +A ++   +T  ++ P
Sbjct: 180 LCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINP 239

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  TFT LIDAF K+G +D+A  ++ +ML+     N VTY+ LI+G      +  A   +
Sbjct: 240 DVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTF 299

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M      PN+            + R  + M+L+  M R G++ D    +TL
Sbjct: 300 DLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTL 352



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL++F  +  +G+  D +TYNT+I G C+  R  +A +L   +   ++ PN
Sbjct: 730 LCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPN 789

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I FT LID F KEG + +A  ++ +M+ +    N++TY+ LI+G+     +  A  +++
Sbjct: 790 VIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFD 849

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P++            + R  + M+L+  M   G++ D    +TL
Sbjct: 850 LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTL 901



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 73/132 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE +L  A  L+ ++  R + P+I+TYN++I G+C   RL +A  +F+ +      P+
Sbjct: 800 FVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPD 859

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FCK  R++D   +F +M  +G   +  TY+ LI GY ++  +  A  V+ 
Sbjct: 860 VVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 919

Query: 122 EMCENNISPNIA 133
            M +  + P+I 
Sbjct: 920 RMVDCGVPPDIV 931



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 13/170 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  AL + G++   G +P I+T+ +++ G+C  NR+ +A  L   +     +PN + + 
Sbjct: 115 RLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYN 174

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LID  CK G ++ A  + ++M +KG   A++VTY+ L+ G   S   + A  +  +M +
Sbjct: 175 TLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTK 234

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             I+P++             G   EA +LY  ML++ I P+ +  ++L +
Sbjct: 235 RRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++   +T R + PD+ T+  +I  +     LDEA +L++++    + PN++T+  LI+
Sbjct: 225 AARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLIN 284

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR+  A   F  M  KG   NVVTY+ LI+G+ KS+ ++    +++ M    +  
Sbjct: 285 GLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVG 344

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +              G+   A  ++  M+  G+ PD
Sbjct: 345 DTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPD 380



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 90/167 (53%), Gaps = 12/167 (7%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             L  A  +F  +  +G  PD++TYNT+I G+C   R+++ ++LF ++T   L  ++ T+ 
Sbjct: 840  RLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYN 899

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             LI  +C+ G+++ A  +F++M++ G   ++VTY+ L+D    +  ++ A  + E++ +N
Sbjct: 900  TLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKN 959

Query: 127  NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +  +I              +  EA  L+ S+ R G+  D +   T+
Sbjct: 960  QMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITM 1006



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 12/162 (7%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   ++  +KLF ++T +GL  D  TYNT+I GYC   +L+ A ++F ++    + P+ +
Sbjct: 872  KSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIV 931

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+ IL+D  C  G+++ A +M   + +     +++TY+ +I G  ++  +K A+ ++  +
Sbjct: 932  TYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSL 991

Query: 124  CENNISPN-IA-----------GRPTEAMQLYDSMLRNGIMP 153
                +  + IA           G   EA +L   M  +G MP
Sbjct: 992  TRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMP 1033



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  +KLF ++   GL  D  TYNT+I GYC + +L  A  +F  +    + P+ I
Sbjct: 323 KSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDII 382

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  IL+   C  G +  A + F+ M        +V Y+ +I G  K+  ++ A++++  +
Sbjct: 383 THCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRL 442

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIM 152
               + P+              G   EA +L+  M  +GI+
Sbjct: 443 PVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGII 483



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A  LF ++      P I+ +  ++     +N+ D  + LF K+  + +  +  +FTI
Sbjct: 596 FDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTI 655

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC+  R   A  +  KM++ G + ++VT   L++G+ +    + A  + + M E  
Sbjct: 656 LIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELG 715

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN+    T             A++++  M + GI+ D +  +TL
Sbjct: 716 LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTL 761



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+  D+ ++  +I  +C  +RL  A+ +  K+  +   P+ +TF  L+  FC   R+ DA
Sbjct: 95  GISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDA 154

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN------ISPNI--- 132
             + + M++ G + NVV Y+ LID   K+ ++  A ++  EM +        ++ N    
Sbjct: 155 FSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLT 214

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               +G   +A ++   M +  I PD    + L D
Sbjct: 215 GLCYSGEWRQAARILRDMTKRRINPDVFTFTALID 249



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +     + AL LF ++      P ++ +  ++    +L R +  +   +++    +  +
Sbjct: 40  FLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHD 99

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +FTILI  FC+  R+  A  +  KM++ G   ++VT+  L+ G+     +  AF +  
Sbjct: 100 LYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVA 159

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNG 150
            M ++   PN+    T    L D + +NG
Sbjct: 160 SMVKSGYEPNVVVYNT----LIDCLCKNG 184


>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
 gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
          Length = 478

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 16/168 (9%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            H++ AL+LF  +     +PD+ +YNTII G C   RL EA+ +F ++    + P  +T+
Sbjct: 180 AHIEDALRLFRNIP----KPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTY 235

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T +I    +EG  DDA  +F +M  +G   N+VTYS LIDG  K     SA ++ + M +
Sbjct: 236 TTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMVK 295

Query: 126 NNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
               PN                 +EAM++ D M   G  PD  L   L
Sbjct: 296 EKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKL 343



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS--LNRLDEAVQLFEKLTCVQLK 59
           L+   HL  A  L   +   G  P   TYN ++  +CS     +++A++LF  +     K
Sbjct: 139 LVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIP----K 194

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+  ++  +ID  C+ GR+ +A  MFS+M+ K     VVTY+ +I    +      A  +
Sbjct: 195 PDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKI 254

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + EM    +SPN+             GR T A++L D M++   +P+ +  S++ D
Sbjct: 255 FHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVID 310



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  AL +F ++  + + P ++TY T+I         D+A+++F ++    + PN
Sbjct: 207 LCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPN 266

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK GR   A  +  +M+++    N +TYS +IDG  K   +  A +V +
Sbjct: 267 LVTYSSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLD 326

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            M      P+             AGR  EA    D M+  GI P+ +  S  A  N
Sbjct: 327 RMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARIN 382


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A     ++  RGL+PD  TY+ +ICG  ++N+++EA+Q ++      + P+  T+++
Sbjct: 545 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSV 604

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID  CK  R ++    F +M+ K  + N V Y+ LI  Y +S  +  A ++ E+M    
Sbjct: 605 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 664

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ISPN            I  R  EA  L++ M   G+ P+    + L D
Sbjct: 665 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 712



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 12/143 (8%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G+ PD+  + T I  +C   +++EAV+LF K+    + PN +TF  +ID     GR D+
Sbjct: 243 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 302

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A M   KM+E+G +  ++TYS L+ G  +++ +  A+ V +EM +    PN+        
Sbjct: 303 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 362

Query: 133 ----AGRPTEAMQLYDSMLRNGI 151
               AG   +A+++ D M+  G+
Sbjct: 363 SFIEAGSLNKAIEIKDLMVSKGL 385



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           + F ++  + ++P+ + YN +I  YC   RL  A++L E +    + PNS T+T LI   
Sbjct: 620 EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 679

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
               R+++A ++F +M  +G + NV  Y+ LIDGY K   M     +  EM   N+ PN 
Sbjct: 680 SIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK 739

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                        G  TEA +L + M   GI+PD +         L+  G  E
Sbjct: 740 ITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLE 792



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A ++  ++  RG   D ++YNT+I G C   +LDEA    +++    LKP++ T++I
Sbjct: 510 LDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 569

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI       ++++A   +      G   +V TYS +IDG  K++  +   + ++EM   N
Sbjct: 570 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 629

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN             +GR + A++L + M   GI P+    ++L
Sbjct: 630 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 675



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 71/122 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+KLF ++ + G+ P+++T+NT+I G     R DEA    EK+    ++P  IT++I
Sbjct: 265 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 324

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+    +  R+ DA  +  +M +KG   NV+ Y+ LID + ++ ++  A ++ + M    
Sbjct: 325 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 384

Query: 128 IS 129
           +S
Sbjct: 385 LS 386



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 15/170 (8%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C+L  AL +F  L ++G+ P   T N ++      N   +  + F+ + C  + P+   F
Sbjct: 196 CYL--ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLF 252

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T  I+AFCK G++++A  +FSKM E G   NVVT++ +IDG         AF   E+M E
Sbjct: 253 TTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE 312

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + P +            A R  +A  +   M + G  P+ ++ + L D
Sbjct: 313 RGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 362



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  AL+L   +  +G+ P+  TY ++I G   ++R++EA  LFE++    L+PN   +T
Sbjct: 649 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 708

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K G+M     +  +M  K    N +TY+ +I GY +  N+  A  +  EM E 
Sbjct: 709 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 768

Query: 127 NISPN 131
            I P+
Sbjct: 769 GIVPD 773



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      AL+L+ Q  ++G   D  T N ++ G C   +LDEA ++ +++       +
Sbjct: 469 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD 528

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LI   C + ++D+A M   +M+++G K +  TYS LI G F    ++ A   ++
Sbjct: 529 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWD 588

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +   N + P++            A R  E  + +D M+   + P+ ++ + L
Sbjct: 589 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 640



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  LF ++   GLEP++  Y  +I GY  L ++ +   L  ++    + PN IT+T
Sbjct: 684 RVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 743

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++I  + ++G + +A+ + ++M EKG   + +TY   I GY K   +  AF   +E
Sbjct: 744 VMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 799



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D+AL+  G++  R + P      T+I G C   +  +A++L+ +        ++ T   
Sbjct: 440 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 499

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C+ G++D+A  +  ++L +G   + V+Y+ LI G    + +  AF   +EM +  
Sbjct: 500 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 559

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           + P+       I G     +  EA+Q +D   RNG++PD    S + D   ++  ++E
Sbjct: 560 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 617



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A     ++ +RG+EP +ITY+ ++ G     R+ +A  + +++T     PN I +  L
Sbjct: 301 DEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 360

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID+F + G ++ A  +   M+ KG      TY+ LI GY K+    +A  + +EM     
Sbjct: 361 IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 420

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + N     +             A++    ML   + P G LL+TL
Sbjct: 421 NVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTL 465



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A +L  ++   G   +  ++ ++IC  CS    D A++   ++    + P   
Sbjct: 401 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 460

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             T LI   CK G+   A  ++ + L KG   +  T + L+ G  ++  +  AF + +E+
Sbjct: 461 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 520

Query: 124 -----CENNISPN--IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  + +S N  I+G     +  EA    D M++ G+ PD    S L
Sbjct: 521 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSIL 570


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  +   +  + + P+++TY+T+I GY  L   +EA+ L+  +    ++P+ +++ 
Sbjct: 355 QMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYN 414

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K GR DDA      M   G KA+VVTY+ LID Y K    K A  ++++M   
Sbjct: 415 TLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAE 474

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + PN+            AG   +A  ++    R G+ PD +L S+L D
Sbjct: 475 GLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLID 523



 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+ L+  + + G+ PD ++YNT+I  Y  L R D+A+   + +  V LK + +T+  
Sbjct: 391 FEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNA 450

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA+ K+G+  DA  +F KM  +G   NV+TYS LID Y K+   + A  ++ E     
Sbjct: 451 LIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAG 510

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++             G   +A+ L   M + GI P+ +  ++L D
Sbjct: 511 LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLID 558



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL-DEAVQLFEKLTCVQLKPNSITFT 66
           L  AL +F ++   G+EPD IT+N++I   CS   L +++ ++F ++    ++ +  T+ 
Sbjct: 286 LKKALDIFEEMQKEGVEPDRITFNSLI-AVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYN 344

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LIDA CK G+M+ A  + S M  K    NVVTYS +IDGY K    + A  +Y +M E+
Sbjct: 345 TLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKES 404

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + P+              GR  +A+     M R G+  D +  + L D
Sbjct: 405 GVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALID 453



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 20/187 (10%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DAA  LF ++   GL P+++TY+ +I  Y       +A  +F +     LKP+ + ++ L
Sbjct: 463 DAA-GLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSL 521

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS---QNMKSA-----FDVY 120
           ID+ CK G ++DA ++  +M + G + N+VTY+ LID Y ++    N+++A      +V+
Sbjct: 522 IDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVF 581

Query: 121 --------EEMCENNISPNIAGRPT---EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
                   E +C+   S   A   T    A+ ++  M + G+ P+ +  S + +   + S
Sbjct: 582 NKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCS 641

Query: 170 GSQEHCI 176
             QE  +
Sbjct: 642 SLQEASV 648



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 50/205 (24%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL +F +    G   ++  Y+ ++  Y    R  EA+++F+ +     KPN IT+  
Sbjct: 215 VEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNT 274

Query: 68  LIDAFCKEGRMD-------------------------------------DATMMFSKMLE 90
           +IDA C +G +D                                     D+  +F++M  
Sbjct: 275 IIDA-CGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQR 333

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------------E 138
           +G + ++ TY+ LID   K   M+ A  +   M   NISPN+    T            E
Sbjct: 334 RGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEE 393

Query: 139 AMQLYDSMLRNGIMPDGLLLSTLAD 163
           A+ LY  M  +G+ PD +  +TL D
Sbjct: 394 AIGLYHDMKESGVRPDRVSYNTLID 418



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 40  LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           L +++ A+ +F +        N   ++ ++ A+ + GR  +A  +F  M + G K N++T
Sbjct: 212 LGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLIT 271

Query: 100 YSCLIDGYFKSQ-NMKSAFDVYEEMCENNISPN---------IAGRPT---EAMQLYDSM 146
           Y+ +ID   K   ++K A D++EEM +  + P+         +  R +   ++ +++  M
Sbjct: 272 YNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEM 331

Query: 147 LRNGIMPDGLLLSTLAD 163
            R GI  D    +TL D
Sbjct: 332 QRRGIEQDIFTYNTLID 348



 Score = 43.5 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +I+I    + G+++ A  +F++  + G   NV  YS ++  Y +S   + A  V++ M +
Sbjct: 203 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 262

Query: 126 NNISPNIAGRPT-------------EAMQLYDSMLRNGIMPDGLLLSTL 161
               PN+    T             +A+ +++ M + G+ PD +  ++L
Sbjct: 263 AGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSL 311



 Score = 42.7 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------VQLFEKLTCVQLK 59
           ++ A+ L  ++T  G++P+I+TYN++I  Y    ++D          + +F K+     +
Sbjct: 531 VEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTE 590

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
               T T   +A    G +  A  +F +M + G K NVVT+S +++   +  +++ A  +
Sbjct: 591 IICKTLTSQQNANDHTGVL-AAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVL 649

Query: 120 YEEM 123
            E+M
Sbjct: 650 LEQM 653


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++   G  PD++ Y  ++ G+ +  RLD A+ L  ++      P+
Sbjct: 197 LCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPD 256

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T++ID  CK GR+DDA  +F +++      NVVTYS LI GY ++  +     V  
Sbjct: 257 VVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMR 316

Query: 122 EM-CENNISP--------NIAGRPTEAMQLYDSMLRNGIMPDG 155
           EM C  N+          ++  R  EA  ++  M   G +PD 
Sbjct: 317 EMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDA 359



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LDAA  +  +   R   PD++TYNT++     L R+DEA+  F ++T     P 
Sbjct: 92  LCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPT 151

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  +I   C+  R+ DA  +F++M+++    N+VTYS +IDG  KS  +  A  + +
Sbjct: 152 LVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLD 211

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P++            AGR   A+ L   M+  G +PD +  + + D
Sbjct: 212 RMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVID 265



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 76/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  AL++F ++ DR   P+++TY+ +I G C  ++LDEA QL +++     +P+
Sbjct: 162 LCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPD 221

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T L+  F   GR+D A  +  +M+ +G   +VVTY+ +ID   K   +  A +++ 
Sbjct: 222 LVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFR 281

Query: 122 EMCENNISPNI 132
           E+  N  SPN+
Sbjct: 282 ELVANKCSPNV 292



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 54/196 (27%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITF 65
           H DA+L+L         +PD+++Y T+I G C L R+D A  LF K+      +PN+ T+
Sbjct: 32  HFDASLELAHA------QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTY 85

Query: 66  TILIDAFCKE-----------------------------------GRMDDATMMFSKMLE 90
             L+D  CK+                                   GR+D+A   F++M E
Sbjct: 86  NALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTE 145

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTE 138
           +G    +V+++ +I G  +++ +  A +V+ EM + +  PN+            + +  E
Sbjct: 146 EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDE 205

Query: 139 AMQLYDSMLRNGIMPD 154
           A QL D M+  G  PD
Sbjct: 206 AQQLLDRMVSEGCRPD 221



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F +L      P+++TY+ +I GYC  +R+DE  ++  ++ C   +PN
Sbjct: 267 LCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMAC---RPN 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+  +I       R ++A  MF +M E G   +  TY  L
Sbjct: 324 VVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 365



 Score = 39.3 bits (90), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLE-KGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           N  T +I++   C+ GR+  A   F   LE    + +VV+Y+ LI+G  K   + +AFD+
Sbjct: 9   NDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDL 68

Query: 120 YEEM 123
           + +M
Sbjct: 69  FRKM 72


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G +PD +T+ T++ G    N+  EAV L E++     +P+ 
Sbjct: 156 CHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDL 215

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +I+  CK G  D A  + +KM +   +A+VV Y+ +IDG  K ++M  AFD++ +
Sbjct: 216 VTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNK 275

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P++             GR ++A +L   ML   I PD +  + L D
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALID 328



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 70/132 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D AL L  ++    +E D++ YNTII G C    +D+A  LF K+    +KP+
Sbjct: 225 LCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 284

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   C  GR  DA+ + S MLEK    ++V ++ LID + K   +  A  +Y+
Sbjct: 285 VFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYD 344

Query: 122 EMCENNISPNIA 133
           EM + +I P+  
Sbjct: 345 EMVKRSIDPSFV 356



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++++  LD A+ LFG +      P I+ ++ ++     +N+ D  + L E++  + +  N
Sbjct: 50  VLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHN 109

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I I+ FC+  ++  A  +  KM++ G   ++VT + L++G+     +  A  + +
Sbjct: 110 LYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVD 169

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M E    P+               + +EA+ L + M+  G  PD
Sbjct: 170 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 214



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  Q+ + G+  ++ TY+  I  +C  ++L  A+ +  K+  +   P+ +T   
Sbjct: 91  FDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNS 150

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ FC   R+ +A  +  +M+E G + + VT++ L+ G F+      A  + E M    
Sbjct: 151 LLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 210

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G P  A+ L + M +  I  D ++ +T+ D
Sbjct: 211 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIID 258


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K   L++A  L G +   G+ PD+ TY   + G C   R+ +AV++FE++    + PN
Sbjct: 289 MCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPN 348

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ FT LIDA CKEG +     +  +M  +G K ++V Y+ L +G  + +++K+A D+ E
Sbjct: 349 TVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVE 408

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  N + P+              G    AM++   M   G+  D +  +TL
Sbjct: 409 EMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTL 460



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +I+   L +A  +F ++  RG+ P ++T+NT++ G C  + L+ A  L   +    + P+
Sbjct: 254 MIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPD 313

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   +   CK GR+ DA  MF +M E+G   N V ++ LID + K  N+ +  +++ 
Sbjct: 314 VYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHR 373

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    I  ++                  A  + + M  NG+ PD +  +TL D
Sbjct: 374 EMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLID 427



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AA  +  ++ + GL+PD +TY T+I G+C    LD A+++ ++++   +  + +T+T 
Sbjct: 400 LKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTT 459

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K GR  D+  +  +M+E G + +  TY+ +ID + K+ ++K+ F + +EM    
Sbjct: 460 LISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKG 519

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P             I G+   A  L ++ML  G+ PD +  + L D
Sbjct: 520 RKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLD 567



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 4/155 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE ++ A L+L  ++  RG++ D++ YN +  G C +  L  A  + E++    LKP+ +
Sbjct: 361 KEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKV 420

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID FCKEG +D A  M  +M ++G   + VTY+ LI G  KS     +  +  EM
Sbjct: 421 TYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEM 480

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            E  + P+     T    + D+  +N  +  G  L
Sbjct: 481 MEAGLEPD----NTTYTMVIDAFCKNSDVKTGFKL 511



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 91/175 (52%), Gaps = 18/175 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A+++  +++D G+  D +TY T+I G     R  ++ ++  ++    L+P++ 
Sbjct: 431 KEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNT 490

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T++IDAFCK   +     +  +M  KG K  VVTY+ +++G+     MK+A  +   M
Sbjct: 491 TYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAM 550

Query: 124 -----CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLST----LADYNLQSS 169
                C ++I+ NI         L D   ++G + D   L +    ++D+ L +S
Sbjct: 551 LNIGVCPDDITYNI---------LLDGHCKHGKVRDAEELKSAKGMVSDFGLYTS 596



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   + QL D G+ P+   +N ++       +L  A  +F+++    + P  +TF  L+ 
Sbjct: 228 AYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMS 287

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK   ++ A  +   M + G   +V TY   + G  K+  ++ A +++EEM E  ++P
Sbjct: 288 GMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNP 347

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N              G     ++L+  M   GI  D +  + LA+
Sbjct: 348 NTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALAN 392



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 40  LNRLD---EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96
           +NRL    EA   + +L    + P +  F +L+    + G++  A  MF +ML +G    
Sbjct: 219 MNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPT 278

Query: 97  VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYD 144
           VVT++ L+ G  K+ ++ SA  +   M +  ++P++            AGR  +A+++++
Sbjct: 279 VVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFE 338

Query: 145 SMLRNGIMPDGLLLSTLAD 163
            M   G+ P+ ++ +TL D
Sbjct: 339 EMRERGVNPNTVVFTTLID 357


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+ L  ++  +G  PDI +YNTII   C+  +++EA  +FE L    +  N
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVAN 485

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  +I A  ++GR  DA  +  +M+  G   +VV+Y+ LI    K  N+  +  + E
Sbjct: 486 GITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLE 545

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  I PN               R  +A++L   ML  G+ PD +  +TL
Sbjct: 546 EMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL 597



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  L  A +L+  +  +G +PD  TY+ ++ G C L R+  AV+L  ++      PN 
Sbjct: 322 LAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNV 381

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+TI++ +FCK G  DD   +  +M  KG   N   Y+ +I    K   M  A  + +E
Sbjct: 382 VTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 441

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           M     +P+I    T            EA  +++++L  G++ +G+  +T+
Sbjct: 442 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTI 492



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 76/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+++     A++L  ++   G   D+++YN +I   C    +D ++ L E++    +KPN
Sbjct: 496 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 555

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++ ILI   CKE R+ DA  +  +ML +G   ++VTY+ LI+G  K   M +A ++ E
Sbjct: 556 NVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLE 615

Query: 122 EMCENNISPNI 132
           ++   N+ P+I
Sbjct: 616 KLHNENVHPDI 626



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 54/88 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  AL+L  Q+ ++GL PDI+TYNT+I G C +  +  A+ L EKL    + P+
Sbjct: 566 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 625

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML 89
            IT+ ILI   CK   +DDA M+ ++ +
Sbjct: 626 IITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + +A++L  ++  +G  P+++TY  ++  +C     D+   L E+++   L  N
Sbjct: 356 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S  +  +I A CK+GRMD+A  +  +M  +G   ++ +Y+ +I     ++ M+ A  ++E
Sbjct: 416 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475

Query: 122 EMCE-----NNISPNIA-------GRPTEAMQLYDSMLRNGIMPD-----GLLLSTLADY 164
            + E     N I+ N         GR  +A++L   M+ +G   D     GL+ +   D 
Sbjct: 476 NLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDG 535

Query: 165 NLQSS 169
           N+  S
Sbjct: 536 NVDRS 540



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 16/158 (10%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  + G++     E +++ +NT+I G  +  +L EA +L+E +     +P++ T++IL
Sbjct: 297 DEARAMLGRVP----ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   CK GR+  A  +  +M +KG   NVVTY+ ++  + K+        + EEM    +
Sbjct: 353 MHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + N              GR  EAM L   M   G  PD
Sbjct: 413 TLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 450



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 66/115 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+ ++D +L L  ++ ++G++P+ ++YN +I   C   R+ +A++L +++    L P+
Sbjct: 531 MCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 590

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            +T+  LI+  CK G M  A  +  K+  +    +++TY+ LI  + K + +  A
Sbjct: 591 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDA 645



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL L   +   G  PD + Y T+I   C    + EA  L  ++  +    +  TF  +
Sbjct: 192 DEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDV 251

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN- 127
           +   C  GR+ +A  +  +M+ KG    V+TY  L+ G  + +    A  +   + E N 
Sbjct: 252 VRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNV 311

Query: 128 ------ISPNIA-GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 I   +A G+  EA +LY++M   G  PD    S L
Sbjct: 312 VLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 29/162 (17%)

Query: 5   ECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +CH DA L L+ ++  R  + P   T+       C L R DEA+ L   +      P+++
Sbjct: 153 DCHADA-LALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAV 211

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  +I A C +G + +A  + ++ML  G  A+V T+                 DV   M
Sbjct: 212 LYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFD----------------DVVRGM 255

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
           C         GR  EA +L D M+  G MP     G LL  L
Sbjct: 256 CG-------LGRVREAARLVDRMMTKGCMPGVMTYGFLLQGL 290


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A +L  ++   G  PD++ Y  ++ G+ +  RLD A+ L  ++      P+
Sbjct: 247 LCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPD 306

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T++ID  CK GR+DDA  +F +++      NVVTYS LI GY ++  +     V  
Sbjct: 307 VVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMR 366

Query: 122 EM-CENNISP--------NIAGRPTEAMQLYDSMLRNGIMPDG 155
           EM C  N+          ++  R  EA  ++  M   G +PD 
Sbjct: 367 EMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDA 409



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LDAA  +  +   R   PD++TYNT++     L R+DEA+  F ++T     P 
Sbjct: 142 LCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPT 201

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++F  +I   C+  R+ DA  +F++M+++    N+VTYS +IDG  KS  +  A  + +
Sbjct: 202 LVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLD 261

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P++            AGR   A+ L   M+  G +PD +  + + D
Sbjct: 262 RMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVID 315



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 76/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  AL++F ++ DR   P+++TY+ +I G C  ++LDEA QL +++     +P+
Sbjct: 212 LCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPD 271

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T L+  F   GR+D A  +  +M+ +G   +VVTY+ +ID   K   +  A +++ 
Sbjct: 272 LVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFR 331

Query: 122 EMCENNISPNI 132
           E+  N  SPN+
Sbjct: 332 ELVANKCSPNV 342



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 87/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D AL  F Q+T+ G  P ++++N II G C   RL +A+++F ++      PN +T++
Sbjct: 182 RVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYS 241

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++ID  CK  ++D+A  +  +M+ +G + ++V Y+ L+ G+  +  + SA  +   M   
Sbjct: 242 VVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ 301

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              P++             GR  +A +++  ++ N   P+ +  S L
Sbjct: 302 GCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSAL 348



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   +DAA  LF ++   G   P+  TYN ++ G C  +RLD A  +  +       P
Sbjct: 106 LCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAP 165

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  L+ A  + GR+D+A   F++M E+G    +V+++ +I G  +++ +  A +V+
Sbjct: 166 DVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVF 225

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            EM + +  PN+            + +  EA QL D M+  G  PD
Sbjct: 226 NEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPD 271



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 20/177 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE-KLTCVQLKPNSITFT 66
           LDAA  L  ++   G++ +  T + I+ G C   R+ +A++ F+  L     +P+ +++T
Sbjct: 41  LDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYT 100

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LI+  CK GR+D A  +F KM+  G  + N  TY+ L+DG  K   + +A  V  E  +
Sbjct: 101 TLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARK 160

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            + +P++             GR  EA+  +  M   G +P      TL  +N   +G
Sbjct: 161 RDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVP------TLVSFNAIITG 211



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F +L      P+++TY+ +I GYC  +R+DE  ++  ++ C   +PN
Sbjct: 317 LCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMAC---RPN 373

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+  +I       R ++A  MF +M E G   +  TY  L
Sbjct: 374 VVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 415



 Score = 43.1 bits (100), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 44  DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
           ++A+QLF +  C QL  +S+T+ +LI  FC    +D A  +  +M  +G + N  T S +
Sbjct: 8   NQALQLFRENPC-QLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSII 66

Query: 104 IDGYFKSQNMKSAFDVYEEMCE-NNISPNIA------------GRPTEAMQLYDSML-RN 149
           + G  +   +  A + ++   E  +  P++             GR   A  L+  M+   
Sbjct: 67  LQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAG 126

Query: 150 GIMPDGLLLSTLAD 163
           G  P+    + L D
Sbjct: 127 GCRPNAFTYNALVD 140


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+  +   G+ PD+ TYN +I  +  +  +D+A +LFE++     KP+ +T+  +I+   
Sbjct: 447 LYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLG 506

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K G +D+A M+F  M EKG   +V TYS LI+ + KS  +  A  +++EM      PNI 
Sbjct: 507 KNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIV 566

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G+ TEA + Y+++ + G+ PD +  S L
Sbjct: 567 TYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSITYSIL 606



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 56/102 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  LF  + ++G +PD+ TY+ +I  +   N++D A  LF+++      PN
Sbjct: 505 LGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPN 564

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + G+  +A   +  + ++G   + +TYS L
Sbjct: 565 IVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSITYSIL 606



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   + ++G+  D+  YN I      L ++     L++ +    + P+  T+ I+I 
Sbjct: 409 AIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMIS 468

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +F + G +D A+ +F +M +   K +VVTY+ +I+   K+ ++  A  ++++M E    P
Sbjct: 469 SFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDP 528

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++            + +   A  L+D M+  G +P+ +  + L D
Sbjct: 529 DVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLD 573



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 62/121 (51%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
             +++ ++  +G + DI  YN ++        +D+A Q+FE +      P++ T+TILI 
Sbjct: 202 GFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIR 261

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K G+      +  +M+ +G   N++ Y+ +I+   K++ +  A  +  +M E++  P
Sbjct: 262 MSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRP 321

Query: 131 N 131
           N
Sbjct: 322 N 322



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 48/209 (22%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID- 70
           + L  ++   G   ++I YNT+I        +DEA+ +  K+     +PN  T++I++D 
Sbjct: 273 VSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDV 332

Query: 71  -------------------------------AFCKEGRMDDATMMFSKMLEKGPKANVVT 99
                                          A CK G   +A  +F +M     K +   
Sbjct: 333 LSTGGQLHRLNEILDICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYA 392

Query: 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------GRPTEA---MQLYDSML 147
           +  +++    ++    A D+   M E  I+ ++          G+  +      LYD+M 
Sbjct: 393 FVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMR 452

Query: 148 RNGIMPD----GLLLSTLADYNLQSSGSQ 172
            NG++PD     +++S+     L    S+
Sbjct: 453 ANGVVPDVFTYNIMISSFGRVGLVDKASE 481



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  +     +PD  TY  +I       +  + V L E++       N
Sbjct: 228 LAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLN 287

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I +  +I+A  K   +D+A  M SKM+E   + N  TYS ++D
Sbjct: 288 LIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLD 331



 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 20/153 (13%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILI 69
           A++L  ++   G+  +I T N ++     + R LD A +         L+ N  T+  L+
Sbjct: 138 AMRLIAEMERDGVPGNISTVNLLVGMGVEVGRCLDLASKW-------GLRLNGYTYKCLV 190

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  +   +     ++ KM  KG K ++  Y+ L++   K+  +  A+ V+E+M +N   
Sbjct: 191 QAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCD 250

Query: 130 PNI------------AGRPTEAMQLYDSMLRNG 150
           P+             AG+ T+ + L + M+  G
Sbjct: 251 PDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEG 283



 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A  +F ++ +   + D   + +++   C+  +  EA+ L   +    +  +
Sbjct: 365 LCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTD 424

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              + ++  A  K  ++   + ++  M   G   +V TY+ +I  + +   +  A +++E
Sbjct: 425 VGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFE 484

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM + +  P++             G   EA  L+  M   G  PD    S L +
Sbjct: 485 EMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIE 538


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 17/192 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L  A +L  ++   GL PD +TY +II  +     L +A  LF ++    + P+
Sbjct: 492 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPS 551

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+LI ++   GR+  A + F +M EKG   NV+TY+ LI+G  K + M  A++ + 
Sbjct: 552 VVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFA 611

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD-----GLLLSTLADY 164
           EM    ISPN              G   EA++LY  ML   I PD      LL     DY
Sbjct: 612 EMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDY 671

Query: 165 NLQSSGSQEHCI 176
            L      E+ I
Sbjct: 672 KLHVVRHLENVI 683



 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A KL   + ++ L PD+++YNT+I GY  L  + EA  LF +L    L P+
Sbjct: 317 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPS 376

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  C+ G +D A  +  +M++ GP  +V T++  + G+ K  N+  A ++++
Sbjct: 377 VVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFD 436

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P+              G P++A  + + ML  G  PD +  +   D
Sbjct: 437 EMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFID 490



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ ++D A +++  + + G+ P ++TYNT++  +C    + EA+QL  ++  +   PN +
Sbjct: 179 RDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDV 238

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L++     G M+ A  +   ML  G + +V TY  LI GY +   ++ A  + EEM
Sbjct: 239 TYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEM 298

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 P +             GR ++A +L D M+   +MPD +  +TL
Sbjct: 299 LSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTL 348



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A +L   +   GLE  + TY+ +I GYC   +++EA +L E++      P  +T+  
Sbjct: 253 MEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNT 312

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   CK GR+ DA  +   M+ K    ++V+Y+ LI GY +  N+  AF ++ E+   +
Sbjct: 313 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRS 372

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           ++P++             G    AM+L D M+++G  PD    +T  
Sbjct: 373 LAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFV 419



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A++L  ++   G +PD+ T+ T + G+C +  L  A +LF+++    L+P+   +  
Sbjct: 393 LDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYIT 452

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I    K G    A  M  +ML +G   +++TY+  IDG  K  N+K A ++ ++M  N 
Sbjct: 453 RIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNG 512

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P+            +AG   +A  L+  ML  GI P  +  + L
Sbjct: 513 LVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVL 558


>gi|413948245|gb|AFW80894.1| hypothetical protein ZEAMMB73_865420 [Zea mays]
          Length = 573

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 3/121 (2%)

Query: 6   CHLDAALKLFG---QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C  + A + +G   +L ++G EPD++TYNT++ GYC   RL +A+ LF+ +   ++ P+ 
Sbjct: 219 CRGEDAERAYGFLEELEEQGFEPDVVTYNTLLAGYCRKGRLQDALHLFDVMPHRRVPPDL 278

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++ TIL+D  CK  R+ DA  MF +M+  G + + V YS LI GY     +K A  +  E
Sbjct: 279 VSHTILMDGLCKAWRLKDARRMFDRMVHGGLRPDAVAYSVLITGYCNEGQLKEARSLLME 338

Query: 123 M 123
           M
Sbjct: 339 M 339



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 57/109 (52%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + PD  T+N ++   C     + A    E+L     +P+ +T+  L+  +C++GR+ DA 
Sbjct: 204 VRPDARTFNILVAALCRGEDAERAYGFLEELEEQGFEPDVVTYNTLLAGYCRKGRLQDAL 263

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            +F  M  +    ++V+++ L+DG  K+  +K A  +++ M    + P+
Sbjct: 264 HLFDVMPHRRVPPDLVSHTILMDGLCKAWRLKDARRMFDRMVHGGLRPD 312



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 12/133 (9%)

Query: 41  NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           NR DE       +    ++P++ TF IL+ A C+    + A     ++ E+G + +VVTY
Sbjct: 187 NRFDELWAARGAMARAGVRPDARTFNILVAALCRGEDAERAYGFLEELEEQGFEPDVVTY 246

Query: 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLR 148
           + L+ GY +   ++ A  +++ M    + P++            A R  +A +++D M+ 
Sbjct: 247 NTLLAGYCRKGRLQDALHLFDVMPHRRVPPDLVSHTILMDGLCKAWRLKDARRMFDRMVH 306

Query: 149 NGIMPDGLLLSTL 161
            G+ PD +  S L
Sbjct: 307 GGLRPDAVAYSVL 319



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 35/165 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------------- 46
           L K   L  A ++F ++   GL PD + Y+ +I GYC+  +L EA               
Sbjct: 288 LCKAWRLKDARRMFDRMVHGGLRPDAVAYSVLITGYCNEGQLKEARSLLMEMAGSGLLDI 347

Query: 47  -----------VQLFEKLTCVQLKP---------NSITFTILIDAFCKEGRMDDATMMFS 86
                      V+  + LTC+ +            S +++ LI A C++ R + A  +  
Sbjct: 348 AFALRVVVQGHVKFGKLLTCLNMVAPLRKYGIVIPSQSYSCLIGALCEDMRPNAARGLLQ 407

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            M+E G   ++  Y+ ++D + +  N K A DV  EM    + PN
Sbjct: 408 WMIEDGHCPSLQMYNMIVDCFCRCDNPKEALDVKVEMTSREVKPN 452



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 53/89 (59%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  L  AL LF  +  R + PD++++  ++ G C   RL +A ++F+++    L+P+++
Sbjct: 255 RKGRLQDALHLFDVMPHRRVPPDLVSHTILMDGLCKAWRLKDARRMFDRMVHGGLRPDAV 314

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG 92
            +++LI  +C EG++ +A  +  +M   G
Sbjct: 315 AYSVLITGYCNEGQLKEARSLLMEMAGSG 343



 Score = 44.3 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +  ++T R ++P+  TY T+I   C L +      +  ++      PN    T L+ 
Sbjct: 437 ALDVKVEMTSREVKPNYNTYQTLIICLCRLGKSLSGQSVMVEMIESDFHPNEAICTALVC 496

Query: 71  AFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            FCKEG +D   ++     L+   + N  +Y+ L+  Y ++++   +  + + M E    
Sbjct: 497 GFCKEGDLDRGELIVKLFALDFQIRCN-ESYTALMRTYCETRSTADSLALQDRMLELGFV 555

Query: 130 PN 131
           PN
Sbjct: 556 PN 557



 Score = 43.5 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 53/112 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++   +AA  L   + + G  P +  YN I+  +C  +   EA+ +  ++T  ++KPN
Sbjct: 393 LCEDMRPNAARGLLQWMIEDGHCPSLQMYNMIVDCFCRCDNPKEALDVKVEMTSREVKPN 452

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
             T+  LI   C+ G+      +  +M+E     N    + L+ G+ K  ++
Sbjct: 453 YNTYQTLIICLCRLGKSLSGQSVMVEMIESDFHPNEAICTALVCGFCKEGDL 504


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 13/177 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + +L L G++  RG+  D+I Y  ++   C   ++DEA  +F         PN +T+T+L
Sbjct: 331 NESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVL 390

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           IDA CK G +D A  + S+M EK    NVVT+S +I+G  K   +  A D   EM E  I
Sbjct: 391 IDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGI 450

Query: 129 SPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN+    T             A+ +Y  ML  G+  +  ++ +L +  L+ +G  E
Sbjct: 451 DPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVN-GLKKNGKIE 506



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  A     ++ +RG++P+++TY T+I G       + A+ ++ ++ C  ++ N
Sbjct: 429 LVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVN 488

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                 L++   K G+++ A  +F +M E+G   + V Y+ LIDG FK+ N+ +AF V +
Sbjct: 489 KFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQ 548

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E+ E N+ P+            + G+  EA    + M   G+ PD +  +T+
Sbjct: 549 ELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTM 600



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 53/215 (24%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  L+ ++  +G+ PD++T + ++ G C   R  EA  LF ++  +   PN +T+ +
Sbjct: 260 VDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCM 319

Query: 68  LIDAF-----------------------------------CKEGRMDDATMMFSKMLEKG 92
           LID                                     CKEG++D+A  MF   L   
Sbjct: 320 LIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDN 379

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------------AGRPT 137
              N VTY+ LID   K+ N+  A  V  EM E +ISPN+                G+ T
Sbjct: 380 HTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKAT 439

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           + M+    M   GI P+ +   T+ D + +  G +
Sbjct: 440 DYMR---EMKERGIDPNVVTYGTVIDGSFKCLGQE 471



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +DAA  +   +   G+EP+++TY   I  YC  N +D+A  L+E++    + P+
Sbjct: 219 LCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPD 278

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + L+   CK+GR  +A  +F +M + G   N VTY  LID   K+Q    +  +  
Sbjct: 279 VVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLG 338

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+    +  ++             G+  EA  ++   L +   P+G+  + L D
Sbjct: 339 EVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLID 392



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L AA K+  +LT++ L PD + YN  I   C L +  EA    E++    LKP+
Sbjct: 534 LFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPD 593

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I A  +EG+   A  + + M     K N++TYS LI G F++  ++ A  +  
Sbjct: 594 QVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLN 653

Query: 122 EMCENNISPN-----------IAGRPTE-AMQLYDSMLRNGIMPDGLLLSTL 161
           EM  +  SP              GR ++  +++++ M+  G+  D  + +TL
Sbjct: 654 EMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTL 705



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +  +++ RG+ PD IT+N +I G+     LD A   ++++    + PN  TF  L+ 
Sbjct: 718 AMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLG 777

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                GR+ ++ M+ ++M ++G + + +TY  L+ GY K  N   A  +Y EM      P
Sbjct: 778 GLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLP 837

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMP 153
            ++            G  ++A +L++ M   G++P
Sbjct: 838 KVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLP 872



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +  ++  +G+  D++ YN+++ G C    +D A  + + +    ++PN +T+T+
Sbjct: 190 METAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTM 249

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I  +C+   +DDA  ++ +M+ KG   +VVT S L+ G  K      A+ ++ EM +  
Sbjct: 250 FIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIG 309

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +PN             A R  E++ L   ++  G++ D ++ + L D+
Sbjct: 310 AAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDW 358



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 22/166 (13%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI------TFTI 67
           L  ++  RG+  D +T NT++ G C   R+D A  L E    V ++   I       +  
Sbjct: 124 LLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAE----VMVRGGGIGGLDVVGWNS 179

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D +CK G M+ A  +  +M  +G   +VV Y+ L+ G  ++  + +A D+ + M  + 
Sbjct: 180 LVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDG 239

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           + PN+                 +A  LY+ M+R G++PD + LS L
Sbjct: 240 VEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSAL 285



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 16/153 (10%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D++ +N+++ GYC +  ++ A  + E++    +  + + +  L+   C+ G +D A  M 
Sbjct: 173 DVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMV 232

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
             M   G + NVVTY+  I  Y +   +  AF +YEEM    + P++             
Sbjct: 233 DTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKD 292

Query: 134 GRPTEAMQLYDSMLRNGIMPDG----LLLSTLA 162
           GR +EA  L+  M + G  P+     +L+ TLA
Sbjct: 293 GRFSEAYALFREMEKIGAAPNHVTYCMLIDTLA 325



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  HLD A   + Q+   G+ P++ T+NT++ G  S  R+ E+  +  ++    ++P+++
Sbjct: 746 KSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNL 805

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ IL+  + K+    +A  ++ +M+ KG    V TY+ LI  + K   M  A +++ EM
Sbjct: 806 TYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEM 865

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
               + P        ++G       TE  +    M   G  P    LS+++
Sbjct: 866 QNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSIS 916



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 48/214 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E     ALKL   +    ++P++ITY+T+I G      +++A  L  +++     P S+
Sbjct: 606 REGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSL 665

Query: 64  T-----------------------------------FTILIDAFCKEGRMDDATMMFSKM 88
           T                                   +  L+   C  G    A ++  +M
Sbjct: 666 THRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEM 725

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
             +G   + +T++ LI G+FKS ++ +AF  Y++M  + ISPN+            AGR 
Sbjct: 726 SGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRI 785

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQSS 169
            E+  + + M + GI P  L    L   Y  QS+
Sbjct: 786 GESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSN 819



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  LF ++ +RG+  D + Y T+I G      L  A ++ ++LT   L P+
Sbjct: 499 LKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPD 558

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ + + I+  C  G+  +A     +M   G K + VTY+ +I    +      A  +  
Sbjct: 559 AVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLN 618

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
            M  ++I PN+            AG   +A  L + M  +G  P  L
Sbjct: 619 GMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSL 665


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 14/161 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A  +F  +   G+ PDI +YN +I G+C +   D A+ LFE++ C ++ PN
Sbjct: 266 LVKE--VNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPN 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK G++  A  +  +M ++G   +++TYS L+D   K+     A  +  
Sbjct: 324 VVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLT 383

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           ++ +  + PN+             GRP +A  +++ +L  G
Sbjct: 384 KLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKG 424



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 75/143 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  ALKL  ++ DRG  PDIITY++++   C  +  D+A+ L  KL    L+PN
Sbjct: 334 LCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPN 393

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILI+  CK GR +DA  +F  +L KG   NV TY+ +I  +  +     A  +  
Sbjct: 394 MYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLS 453

Query: 122 EMCENNISPNIAGRPTEAMQLYD 144
           +M EN   PN          L+D
Sbjct: 454 KMEENGCIPNAVTYEIIIRSLFD 476



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 5/165 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A  +F  +  +G +P+++TY++++ GYC +  +++A  +F  +    + P+  
Sbjct: 231 KEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQ 290

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI+ FCK    D A  +F +M  +    NVVTY+ LIDG  KS  +  A  + +EM
Sbjct: 291 SYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEM 350

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQ 167
            +    P+I    +    L D++ +N      + LL+ L D  LQ
Sbjct: 351 HDRGQPPDIITYSS----LLDALCKNHPGDKAIALLTKLKDQGLQ 391



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 86/160 (53%), Gaps = 12/160 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DAA+ LF ++  R + P+++TYN++I G C   ++  A++L +++      P+ IT++ L
Sbjct: 306 DAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSL 365

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +DA CK    D A  + +K+ ++G + N+ TY+ LI+G  K    + A +++E++     
Sbjct: 366 LDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGY 425

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           + N+             G   EA+ +   M  NG +P+ +
Sbjct: 426 NINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAV 465



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 1/108 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ L  +L D+GL+P++ TY  +I G C   R ++A  +FE L       N  T+T++
Sbjct: 376 DKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVM 435

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKS 115
           I  FC  G   +A  M SKM E G   N VTY  +I   F K +N K+
Sbjct: 436 IHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDENDKA 483



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 12/142 (8%)

Query: 34  ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
           +  +C   ++ EA  +F  +     KPN +T++ L+D +C    ++ A  +F+ M + G 
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 94  KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQ 141
             ++ +Y+ LI+G+ K +   +A +++EEM    I PN+            +G+ + A++
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALK 345

Query: 142 LYDSMLRNGIMPDGLLLSTLAD 163
           L D M   G  PD +  S+L D
Sbjct: 346 LVDEMHDRGQPPDIITYSSLLD 367


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  +  ++ + G EP+I TYN +I G C++ R +EA++L   +    + PN
Sbjct: 368 LCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPN 427

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TIL    CK  R+D A  MF++ L +G K N VTY+ L++GY +   +  A D+ +
Sbjct: 428 IYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILK 487

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           EM +N+ +P+     T    L   +++   +PD L +
Sbjct: 488 EMHQNDCTPDHVTYTT----LIQGLVQGNQLPDALRM 520



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A ++F +   RGL+P+ +TYNT++ GYC  +RL EA+ + +++      P+
Sbjct: 438 LCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPD 497

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI    +  ++ DA  M  +M  KG   N  T + L  G  +  N K A   Y 
Sbjct: 498 HVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYR 557

Query: 122 EMCENNISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +   +             + AG   EA  L   M+  G  P+    +T+
Sbjct: 558 RMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTM 609



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   LD A  LF Q+ + G+  + +TY ++I  +    ++++A++L + +      P+
Sbjct: 298 LVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPD 357

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+TI+I A CK   ++ A  +  KM E G + N+ TY+ LI G    +  + A ++  
Sbjct: 358 VVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVT 417

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + PNI              R   A ++++  L  G+ P+ +  +TL
Sbjct: 418 LMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTL 469



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 62/115 (53%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL+L   +   G+ P+I TY  +  G C L RLD A ++F +     LKPN +T+  L
Sbjct: 410 EEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTL 469

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ +C+  R+ +A  +  +M +     + VTY+ LI G  +   +  A  +++EM
Sbjct: 470 LNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEM 524



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 14/158 (8%)

Query: 11  ALKLFGQLTDRGLEPDII--TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +L+ F  + + G EP +I   YN+++       +LD A  LF ++    +  N++T+T +
Sbjct: 270 SLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSM 329

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  F  + +M+DA  +   M++     +VVTY+ +I    K + ++ A+ V ++M EN  
Sbjct: 330 IQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGC 389

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            PNI              RP EA++L   M + G+ P+
Sbjct: 390 EPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPN 427



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L  ++ ++G  P++ TYNT+I G+C   RLD+A  +   +    + P++ ++ I
Sbjct: 584 MEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNI 643

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKG----PKANVVTYSCLIDGYFKSQ 111
           LI  F  +GR  DA  +++  LE+G    PK  +     L +G  +SQ
Sbjct: 644 LIKEFHNQGRTQDADQLYATALERGVVLNPKPVIQEPDELPEGLVRSQ 691



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 11/153 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H DA++  + ++ DRG       Y   I    +   ++EA  L  ++      PN  T+ 
Sbjct: 549 HKDASI-FYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYN 607

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  FC++GR+DDA  M + M+E G   +  +Y+ LI  +      + A  +Y    E 
Sbjct: 608 TMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALER 667

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLS 159
            +  N    P   +Q  D       +P+GL+ S
Sbjct: 668 GVVLN----PKPVIQEPDE------LPEGLVRS 690


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 13/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ PDI TYN++I   C+L        L  ++   ++ PN
Sbjct: 262 LCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPN 321

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG +  A  +   M+++G + +VVTY+ L+DG+     M  A  V++
Sbjct: 322 VVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFD 381

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M      PN+              R  +AM L + M   G++ D +  +TL  + L   
Sbjct: 382 TMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLI-HGLCHV 440

Query: 170 GSQEHCI 176
           G  +H I
Sbjct: 441 GRLQHAI 447



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+ PD+ T N +I  +C L RL  A  +  KL  +  +P++ TF 
Sbjct: 127 HYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFN 186

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F K + +G + +VVTY  L++G  K  N  +A  +   M + 
Sbjct: 187 TLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQK 246

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
           N  PN+              + TEA  L+  M+  GI PD
Sbjct: 247 NCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPD 286



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     A  +  +L   G +PD  T+NT+I G C   ++ EA+ LF+K      +P+ 
Sbjct: 158 CHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDV 217

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  L++  CK G    A  +   M++K  + NV+ Y+ +ID   K + +  AF+++ E
Sbjct: 218 VTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSE 277

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + IMP+ ++ ST+ D
Sbjct: 278 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF +    G +PD++TY T++ G C +     A++L   +     +PN I 
Sbjct: 195 EGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIA 254

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +ID+ CK+ ++ +A  +FS+M+ KG   ++ TY+ LI         K    +  EM 
Sbjct: 255 YNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 314

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + I PN+             G    A  + D M++ G+ PD +  + L D
Sbjct: 315 NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMD 365



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 73/125 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +G  P++ +YN +I GYC + R+D+A+ L E+++   L  +++T+  
Sbjct: 373 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 432

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+  A  +F +M+  G   ++VTY  L+D   K+ ++  A  + + +  +N
Sbjct: 433 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 492

Query: 128 ISPNI 132
           +  +I
Sbjct: 493 LDADI 497



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 23/163 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  RG+EPD++TY  ++ G+C  + +DEAV++F+ +      PN
Sbjct: 332 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN 391

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+ +C+  RMD A  +  +M  +G  A+ VTY+ LI G               
Sbjct: 392 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG--------------- 436

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            +C         GR   A+ L+  M+ +G +PD +    L DY
Sbjct: 437 -LCH-------VGRLQHAIALFHEMVASGQIPDLVTYRILLDY 471



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 66/116 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  Q++ +GL  D +TYNT+I G C + RL  A+ LF ++      P+ +T+ I
Sbjct: 408 MDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRI 467

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           L+D  CK   + +A ++   +      A+++ Y+  IDG  ++  +++A D++  +
Sbjct: 468 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNL 523



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   L  A+ LF ++   G  PD++TY  ++   C  + L EA+ L + +    L  + 
Sbjct: 438 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADI 497

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
           + + I ID  C+ G ++ A  +FS +  +G  A
Sbjct: 498 LVYNIAIDGMCRAGELEAARDLFSNLSCQGFAA 530



 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           L K  HL  A+ L   +    L+ DI+ YN  I G C    L+ A  LF  L+C
Sbjct: 472 LCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSC 525


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L  ++  + + PDI TY+T+I   C L++ +    LF ++  + + PN  
Sbjct: 225 KDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVC 284

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  +ID  CKEG+++DA  +   M+EKG   +V+TY+ +IDGY     +  A ++++ M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344

Query: 124 CENNISPNIAG------------RPTEAMQLYDSMLRNGIMP 153
              +I P+I              +  EAMQ+   + + G+ P
Sbjct: 345 INKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKP 386



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L  E  +  A+ LF +L    + EP+ + Y T++ G C      +A  L   +     KP
Sbjct: 152 LFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKP 211

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ T+TI+IDAFCK+G +D AT + ++M +K    ++ TYS LID   K    ++   ++
Sbjct: 212 NTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLF 271

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQ 167
            EM   NI PN+             G+  +A ++   M+  G+ PD +  + + D Y L+
Sbjct: 272 LEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLR 331



 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A ++   + ++G++PD+ITYN II GY    ++D A ++F+ +    ++P+
Sbjct: 293 LCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPD 352

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I++ ILI+ + ++ ++D+A  +  ++ +KG K ++VT + L+ G F+    KSA + ++
Sbjct: 353 IISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFD 412

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM      P++    T    L     +NG++ + +
Sbjct: 413 EMLSAGHIPDLYTHCT----LLGGYFKNGLVEEAM 443



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++F  + ++ +EPDII+YN +I GY    ++DEA+Q+  +++   LKP+ +T  +
Sbjct: 334 VDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+    + GR   A   F +ML  G   ++ T+  L+ GYFK+  ++ A   + ++    
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
              NI             G+  +A   ++ +   G+ PD
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPD 492



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+  F +L  R  + +I  Y  +I G C   +LD+A   FEKL  + L P+ IT+T 
Sbjct: 439 VEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTA 498

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +C+EG +D+A  M  KM + G  A+  TY+ ++ G+ +S  +       EE+   +
Sbjct: 499 MISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKS 558

Query: 128 IS 129
            S
Sbjct: 559 FS 560



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +A   F ++   G  PD+ T+ T++ GY     ++EA+  F KL   +   N   +T +I
Sbjct: 406 SAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVI 465

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           D  CK G++D A   F K+   G   +V+TY+ +I GY +   +  A D+  +M +N
Sbjct: 466 DGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDN 522



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +D A+++  +++ +GL+P I+T N ++ G   L R   A   F+++      P+  
Sbjct: 365 RQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLY 424

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   L+  + K G +++A   F K+  +    N+  Y+ +IDG  K+  +  A   +E++
Sbjct: 425 THCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKL 484

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               + P++             G   EA  +   M  NG + D    + +    L+S+  
Sbjct: 485 PLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKV 544

Query: 172 QE 173
            E
Sbjct: 545 SE 546



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  LF Q+      P + +++ ++     +      V LF ++  +++  +    +I
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++++ C   R D    + +   +KG   N VT++ LI G F    +K A  +++++   N
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           I       P E M  Y +++ NG+   G          L   GS +
Sbjct: 173 IC-----EPNEVM--YGTVM-NGLCKKGHTQKAFDLLRLMEQGSTK 210



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A   F +L   GL PD+ITY  +I GYC    LDEA  +  K+       +
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLAD 527

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           + T+ +++  F +  ++ +      ++  K       T   L+D
Sbjct: 528 NRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 13/170 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H  + + LF ++    +       + ++   C ++R D    +        +  N +TFT
Sbjct: 87  HYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFT 146

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LI     E ++ DA  +F K++ +   + N V Y  +++G  K  + + AFD+   M +
Sbjct: 147 TLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQ 206

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  PN              G    A  L + M +  I PD    STL D
Sbjct: 207 GSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLID 256


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE + + AL+L  ++  R + P ++ Y+T+I G+   +    AV LF ++  V +  N
Sbjct: 611 LCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFN 670

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TIL+  F    +M +A  +F +M E+G   + ++Y+ LI G+  ++ MK A+ ++E
Sbjct: 671 IATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFE 730

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM     SPN+            + R   A  ++D M R+ ++PD +  + L D+
Sbjct: 731 EMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDW 785



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 71/124 (57%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A  +F ++ +RGL  D I+Y T+I G+C+   + +A  LFE+++     PN IT+T 
Sbjct: 687 MHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTC 746

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID FCK  R+D AT +F KM       +VVTY+ LID Y K      A  +Y+ M +  
Sbjct: 747 IIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKG 806

Query: 128 ISPN 131
           + P+
Sbjct: 807 VLPD 810



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++   G+ PD+ +Y+ +I  +C    + + + L E++   Q+KP+ +++T LI 
Sbjct: 410 ALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIH 469

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+  + +A  +F  +     K +   Y  LIDG+    +M SA  + EEM  N + P
Sbjct: 470 GLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVP 529

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                          G   +A++++++MLR+GI PD +  + + D
Sbjct: 530 TAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILD 574



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D AL++F  +   G+ PD I  N I+ G C      EA+ L E         N  ++  
Sbjct: 547 FDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNA 606

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CKEG  + A  +  +ML++    +VV YS LI G+ K  N K A +++  M +  
Sbjct: 607 IIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVG 666

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I+ NIA             +  EA  ++  M   G+  D +  +TL
Sbjct: 667 ITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTL 712



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 57/96 (59%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A  LF +++  G  P++ITY  II G+C  NR+D A  +F+K+    + P+ +T+T+
Sbjct: 722 MKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTV 781

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
           LID + K G  D A  ++  M +KG   + +T++ L
Sbjct: 782 LIDWYHKHGYFDQAHKLYDVMKDKGVLPDDITHNVL 817



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 16/172 (9%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL +F      GLEPDI T N ++      NR++   ++FE+L      PN  T+TI
Sbjct: 263 LENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTI 322

Query: 68  LIDAFCK----EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +++ +C     +  M  A ++  K+   G K  VVTYS  I G  K  N+++A  +   +
Sbjct: 323 MMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNL 382

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              N   N              G   EA+Q+ + M  +GI+PD    S L +
Sbjct: 383 HYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILIN 434



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A+ +F  +     + D   Y T+I G+C    +D A++L E++ C +L P 
Sbjct: 471 LCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPT 530

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + +   LI  + K G  D A  +F+ ML  G   + +  + ++DG  ++   K A  + E
Sbjct: 531 AFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLE 590

Query: 122 EMCEN--NISPNI----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  E+  N++P+            G P  A++L   ML+  ++P  +  STL
Sbjct: 591 DFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTL 642



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  + G++   G +P ++TY+T I G C +  ++ A+ L   L       NS +F  +I 
Sbjct: 340 AAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIY 399

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK G + +A  +  +M   G   +V +YS LI+ +    ++    D+ EEM  + I P
Sbjct: 400 GFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKP 459

Query: 131 NIAGRPTEAMQL-YDSMLRNGI 151
           +I    +    L   +ML+N +
Sbjct: 460 SIVSYTSLIHGLCKKNMLQNAV 481



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 4/135 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLD----EAVQLFEKLTCVQ 57
           L++   ++   ++F +L DRG  P+I TY  ++  YCS    D    +A  +  K+    
Sbjct: 292 LVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSG 351

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
            KP  +T++  I   CK G ++ A M+   +       N  +++ +I G+ K   +  A 
Sbjct: 352 EKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEAL 411

Query: 118 DVYEEMCENNISPNI 132
            V EEM  + I P++
Sbjct: 412 QVLEEMKSSGILPDV 426



 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 12  LKLFGQLTD--RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            +LF    D  + +E   + ++ +I  + S + L+ A+ +F     V L+P+  T   L+
Sbjct: 230 FELFSAFLDSPQHVERSGVVFDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLL 289

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
               +  R++    +F ++ ++GP  N+ TY+ +++ Y
Sbjct: 290 KCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFY 327


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 15/173 (8%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   +  A+ L  Q+ + G +PD +T+ T++ G    N+  EAV L E++     +P+ 
Sbjct: 156 CHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDL 215

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +I+  CK G  D A  + +KM +   +A+VV Y+ +IDG  K ++M  AFD++ +
Sbjct: 216 VTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNK 275

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I P++             GR ++A +L   ML   I PD +  + L D
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALID 328



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D AL L  ++    +E D++ YNTII G C    +D+A  LF K+    +KP+
Sbjct: 225 LCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 284

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   C  GR  DA+ + S MLEK    ++V ++ LID + K   +  A  +Y+
Sbjct: 285 VFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYD 344

Query: 122 EMCEN-NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM ++ +  P++              R  E M+++  M + G++ + +  +TL
Sbjct: 345 EMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTL 397



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 96/173 (55%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            +KE  L  A KL+ ++   +   PD++ YNT+I G+C   R++E +++F +++   L  
Sbjct: 330 FVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 389

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++T+T LI  F +    D+A M+F +M+  G   +++TY+ L+DG   + N+++A  V+
Sbjct: 390 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVF 449

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M + ++  +I            AG+  +   L+ S+   G+ P+ +  +T+
Sbjct: 450 EYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 502



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  +F Q+   G+ PDI+TYN ++ G C+   ++ A+ +FE +    +K + +T+T +
Sbjct: 408 DNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTM 467

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+A CK G+++D   +F  +  KG K NVVTY+ ++ G+ +    + A  ++ EM E+  
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP 527

Query: 129 SPNIAGRPTEAMQLYDSMLRNG 150
            PN     T    L  + LR+G
Sbjct: 528 LPNSGTYNT----LIRARLRDG 545



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 68/117 (58%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ AL +F  +  R ++ DI+TY T+I   C   ++++   LF  L+   +KPN +T+T
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 500

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++  FC++G  ++A  +F +M E GP  N  TY+ LI    +  +  ++ ++ +EM
Sbjct: 501 TMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++++  LD A+ LFG +      P I+ ++ ++     +N+ D  + L E++  + +  N
Sbjct: 50  VLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHN 109

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I I+ FC+  ++  A  +  KM++ G   ++VT + L++G+     +  A  + +
Sbjct: 110 LYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVD 169

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M E    P+               + +EA+ L + M+  G  PD
Sbjct: 170 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 214



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L  Q+ + G+  ++ TY+  I  +C  ++L  A+ +  K+  +   P+ +T   
Sbjct: 91  FDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNS 150

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ FC   R+ +A  +  +M+E G + + VT++ L+ G F+      A  + E M    
Sbjct: 151 LLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 210

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G P  A+ L + M +  I  D ++ +T+ D
Sbjct: 211 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIID 258



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++    LF  L+ +G++P+++TY T++ G+C     +EA  LF ++      PN
Sbjct: 471 LCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPN 530

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           S T+  LI A  ++G    +  +  +M   G   +  T+  + +     +  KS  D+
Sbjct: 531 SGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHDGRLDKSFLDM 588


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 17/172 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A KL  +++++G EPD+++Y T+I     L +++EA +L      ++ +PN
Sbjct: 194 LCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL-----SIRFQPN 248

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI+ FC+E ++ +  ++  +M+EKG   NV+TYS +I       N++ A  V+ 
Sbjct: 249 VSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWA 308

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M     SPN+             GR  EA+ +++ M   G  P+ +  +TL
Sbjct: 309 KMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTL 360



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 94/178 (52%), Gaps = 12/178 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +     L GQ+ ++G++P++ITY+T+I     +  ++ A+ ++ K+      PN  
Sbjct: 261 REYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVY 320

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT L+  +   GR+ +A  ++++M E+G + NVV Y+ LI G      M  A  V  +M
Sbjct: 321 TFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKM 380

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
             N  SPN+            AG    A ++++ M+ NG +P+ ++ +++ +   +SS
Sbjct: 381 ERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSS 438



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL ++ ++ + G EP+++ YNT+I G CS  ++ EAV +  K+      PN  T+  LID
Sbjct: 338 ALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALID 397

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F K G +  A+ +++KM+  G   NVV Y+ +++   +S     A+ + E+M  +N  P
Sbjct: 398 GFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPP 457

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N             +GR   A+ L+  M + G  P+
Sbjct: 458 NTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPN 493



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  A +++ ++   G  P+++ Y +++   C  +   +A  L EK++     PN++
Sbjct: 401 KAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTV 460

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF   I   C  GR++ A  +F +M + G   N+ TY+ ++DG  K   +K A ++  EM
Sbjct: 461 TFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEM 520

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E  +  N+             G+  EA++L   ML  G+ PD +  +TL
Sbjct: 521 EEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTL 570



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  +  AL+L  ++ ++G+E +++TYNTI  G+C++ + +EA++L  K+    +KP+
Sbjct: 504 LLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPD 563

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVY 120
           +IT+  L  A+C +G++  A  +  K+   G     V  Y+ L+ G      ++ A    
Sbjct: 564 AITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYL 623

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSM 146
           ++M    I  N A        L++S+
Sbjct: 624 DKMLNEGICLNAATWNALVRGLFNSL 649



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 13/158 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+ LF Q+   G  P+I TYN ++ G    NR+ EA++L  ++    ++ N +T+ 
Sbjct: 474 RVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYN 533

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +   FC  G+ ++A  +  KML  G K + +TY+ L   Y     +K+A  + +++   
Sbjct: 534 TIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAG 593

Query: 127 N-ISPNIAGRPT------------EAMQLYDSMLRNGI 151
               P +A   +            EA+   D ML  GI
Sbjct: 594 GKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGI 631



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 42/195 (21%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALK+F ++ + G +P +  YN ++    S NR      ++  +     +PN  T+ IL
Sbjct: 131 EQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNIL 190

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS--------------------------- 101
           + A CK  R+D A  +  +M  KG + +VV+Y+                           
Sbjct: 191 LKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVS 250

Query: 102 ---CLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSM 146
               LI+G+ +   +K  F +  +M E  I PN+             G    A+ ++  M
Sbjct: 251 VYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKM 310

Query: 147 LRNGIMPDGLLLSTL 161
              G  P+    ++L
Sbjct: 311 FVRGCSPNVYTFTSL 325



 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 58/136 (42%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +EC +D    L  Q+   G+      +  +I  Y  +   ++A+++F ++     +P 
Sbjct: 89  LGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPT 148

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+DA   E R      ++S M   G + NV TY+ L+    K+  +  A  +  
Sbjct: 149 VKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLV 208

Query: 122 EMCENNISPNIAGRPT 137
           EM      P++    T
Sbjct: 209 EMSNKGCEPDVVSYTT 224


>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
          Length = 225

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 91/158 (57%), Gaps = 12/158 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A++L G++ + G+EP+++ Y++++ GYC   R ++  ++F +++   ++P+ + +T
Sbjct: 44  EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 103

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID+ CK G+   A  +   M+ +G + NVVTY+ LI+   K  ++K A  V ++M E 
Sbjct: 104 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 163

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIM 152
            ++P++    T            EAM L + M+R  I+
Sbjct: 164 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGYII 201



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ L   +   G+  D++TY T+I G C    +D+AV+L  ++    ++PN + ++ L
Sbjct: 11  DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSL 70

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +  +CK GR +D   +F +M EKG + +VV Y+ LID   K    K A  V + M    +
Sbjct: 71  LQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGL 130

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            PN+             G   EA+ +   M   G+ PD +  +TL
Sbjct: 131 EPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 175



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
           C+    D+AV L   +    ++ + +T+  LI   C    +D A  +  +M E G + NV
Sbjct: 5   CADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNV 64

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDS 145
           V YS L+ GY KS   +    V+ EM E  I P++             G+  +A  + D 
Sbjct: 65  VVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDM 124

Query: 146 MLRNGIMPD 154
           M+R G+ P+
Sbjct: 125 MVRRGLEPN 133



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 12/105 (11%)

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C +   D A  +   M   G +A+VVTY  LI G   +  +  A ++  EMCE+ I P
Sbjct: 3   ALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEP 62

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+            +GR  +  +++  M   GI PD ++ + L D
Sbjct: 63  NVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLID 107


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L  +L D G+ P++  YN +I   C   R D+A +LF+++    L+PN +T+ I
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A CK G ++DA  +F KM +KG K  V  Y+ LI+GY K  ++  A  +   M +  
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++P  A            G  + AM+L+  M   GI  +    + L
Sbjct: 439 LTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTAL 484



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 72/128 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L   +   GL P   +Y+ +I G C    L  A++L  ++    +  N+ 
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNY 479

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI+ FCK+ +MD+A  +F KM++     N VT++ +I+GY    N++ AF +Y++M
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 124 CENNISPN 131
            E  + P+
Sbjct: 540 VEMGLKPD 547



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A +LF ++  RGLEP+ +TY  +I   C    +++A+ LF+K+    +K  
Sbjct: 348 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI+ +CK+G +D A  + S M+++G      +YS LI G  ++ ++ SA +++ 
Sbjct: 408 VYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHR 467

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E  I+ N       I G     +  EA +L+D M+ + ++P+ +  + + +
Sbjct: 468 EMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIE 521



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 12/181 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +A++L  ++ +RG+  +  T+  +I G+C   ++DEA +LF+K+    + PN +TF +
Sbjct: 459 LSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM---- 123
           +I+ +C  G +  A  ++ +M+E G K +  TY  LI G   +  +  A +   ++    
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 124 -CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
              NN S           GR TE   L+D M   G+  D +  + +    L+    ++ C
Sbjct: 579 AVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638

Query: 176 I 176
           +
Sbjct: 639 V 639



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  AL  + Q+   G  P+ +T+  +I   C    L  A  L +++    + PN
Sbjct: 663 LSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPN 722

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   +D F  EG M+ A  + S ML+ G  A++V+++ LI G  K+  ++ A D+  
Sbjct: 723 KFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMR 781

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           ++ E+  SP+     T            +A +L++ ML  G+ PD
Sbjct: 782 KITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ ++G++PD I Y  +I        + +A+  ++++      PN++T T+LI+  C
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLC 699

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----IS 129
           K G +  A ++  +ML      N  TY+C +D +    +M+ A D++  M + +    +S
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS 759

Query: 130 PNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            NI       AG+  EA+ L   +  +G  PD +  ST+
Sbjct: 760 FNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTI 798



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 47/205 (22%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICG--------------------YCSLN----- 41
           ++  A +L+ Q+ + GL+PD  TY ++I G                    Y  LN     
Sbjct: 528 NIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLT 587

Query: 42  ----------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                     R  E   L++++    +K + ++FTI++ A  K+   + + ++F +M E+
Sbjct: 588 ALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 647

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G K + + Y+C+ID   K +NM  A + +++M  +  SPN             +G    A
Sbjct: 648 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSA 707

Query: 140 MQLYDSMLRNGIMPDGLLLSTLADY 164
             L   ML   ++P+    +   DY
Sbjct: 708 ELLCKEMLAGNVLPNKFTYNCFLDY 732



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 23/134 (17%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G    I+++N +I G C   ++ EA+ L  K+T     P+ I+++ +I   CK G ++ 
Sbjct: 751 QGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINK 810

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAM 140
           A  ++++ML KG K +VV Y+  I                   C      N+ G   +A+
Sbjct: 811 AFELWNEMLYKGLKPDVVAYNIFI-----------------RWC------NVHGESDKAL 847

Query: 141 QLYDSMLRNGIMPD 154
            +Y +M+R+G+ P+
Sbjct: 848 GIYTNMIRSGVQPN 861



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+ L  ++T+ G  PD I+Y+TII   C +  +++A +L+ ++    LKP+
Sbjct: 767 LCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            + + I I      G  D A  +++ M+  G + N  TY  L+ G
Sbjct: 827 VVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E        L+ ++  RG++ D++++  I+      +  +++  LF ++    +KP+
Sbjct: 593 LFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPD 652

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T +IDA  KE  M  A   + +M+  G   N VT++ LI+   KS  + SA  + +
Sbjct: 653 DIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCK 712

Query: 122 EMCENNISPN 131
           EM   N+ PN
Sbjct: 713 EMLAGNVLPN 722



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 47/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL------------------ 43
           L K   +  A+++   + + G+  D +TY T++ G+C +  L                  
Sbjct: 243 LCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPS 302

Query: 44  -----------------DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                            +EA  L  KL  + + PN   +  LID  CK  R DDA  +F 
Sbjct: 303 EANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFK 362

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
           +M  +G + N VTY+ LI    K   ++ A  ++++M +  I   +             G
Sbjct: 363 EMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQG 422

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               A  L   M++ G+ P     S L
Sbjct: 423 SLDRARGLLSGMVKEGLTPTAASYSPL 449



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  LF ++   G+  D   Y   I  YC    LD A  L  ++    +K +
Sbjct: 173 LVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKAS 232

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ + +L+   CK  R+ +A  + + M+  G  A+ VTY  L+ G+ + + ++ A  +  
Sbjct: 233 AVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITH 292

Query: 122 EMCENNISPNIA 133
           +M      P+ A
Sbjct: 293 DMIRLGFVPSEA 304



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A  L  ++   G++   + YN ++ G C   R+ EAV++   +  + +  + +T+ 
Sbjct: 213 NLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYR 272

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  FC+   ++ A  +   M+  G   +    S +ID   K + ++ AF +  ++ + 
Sbjct: 273 TLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDL 332

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+              R  +A +L+  M   G+ P+ +  + L
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAIL 379



 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+  +  T + I+     + +   A  LF+K+    +  +   +T  I A+C+   +D A
Sbjct: 158 GITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGA 217

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
             +  +M  +G KA+ V Y+ L+ G  K+  ++ A +V   M    ++ +     T    
Sbjct: 218 RGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYG 277

Query: 138 --------EAMQLYDSMLRNGIMP 153
                    A+++   M+R G +P
Sbjct: 278 FCRMEELEMALRITHDMIRLGFVP 301


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 13/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ PDI TYN++I   C+L        L  ++   ++ PN
Sbjct: 300 LCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPN 359

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+ ++DA CKEG +  A  +   M+++G + +VVTY+ L+DG+     M  A  V++
Sbjct: 360 VVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFD 419

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M      PN+              R  +AM L + M   G++ D +  +TL  + L   
Sbjct: 420 TMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLI-HGLCHV 478

Query: 170 GSQEHCI 176
           G  +H I
Sbjct: 479 GRLQHAI 485



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H    L L  Q+   G+ PD+ T N +I  +C L RL  A  +  KL  +  +P++ TF 
Sbjct: 165 HYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFN 224

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   C EG++ +A  +F K + +G + +VVTY  L++G  K  N  +A  +   M + 
Sbjct: 225 TLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQK 284

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
           N  PN+              + TEA  L+  M+  GI PD
Sbjct: 285 NCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPD 324



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     A  +  +L   G +PD  T+NT+I G C   ++ EA+ LF+K      +P+ 
Sbjct: 196 CHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDV 255

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  L++  CK G    A  +   M++K  + NV+ Y+ +ID   K + +  AF+++ E
Sbjct: 256 VTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSE 315

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    ISP+I    +                L + M+ + IMP+ ++ ST+ D
Sbjct: 316 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 368



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +  AL LF +    G +PD++TY T++ G C +     A++L   +     +PN I 
Sbjct: 233 EGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIA 292

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +ID+ CK+ ++ +A  +FS+M+ KG   ++ TY+ LI         K    +  EM 
Sbjct: 293 YNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 352

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + I PN+             G    A  + D M++ G+ PD +  + L D
Sbjct: 353 NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMD 403



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+K+F  +  +G  P++ +YN +I GYC + R+D+A+ L E+++   L  +++T+  
Sbjct: 411 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+  A  +F +M+  G   ++VTY  L+D   K+ ++  A  + + +  +N
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +  +I            AG    A  L+ ++   G+ PD
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 569



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  Q++ +GL  D +TYNT+I G C + RL  A+ LF ++      P+ +T+ I
Sbjct: 446 MDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRI 505

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK   + +A ++   +      A+++ Y+  IDG  ++  +++A D++  +    
Sbjct: 506 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG 565

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           + P++             G   EA +L+  M  NG   DG + +T+    L+S+
Sbjct: 566 LQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSN 619



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 73/132 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +  RG+EPD++TY  ++ G+C  + +DEAV++F+ +      PN
Sbjct: 370 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN 429

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ILI+ +C+  RMD A  +  +M  +G  A+ VTY+ LI G      ++ A  ++ 
Sbjct: 430 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 489

Query: 122 EMCENNISPNIA 133
           EM  +   P++ 
Sbjct: 490 EMVASGQIPDLV 501



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HL  A+ L   +    L+ DI+ YN  I G C    L+ A  LF  L+   L+P+
Sbjct: 510 LCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 569

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I   CK G +D+A  +F KM E G   +   Y+ +I G+ +S     A  + +
Sbjct: 570 VRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQ 629

Query: 122 EMCENNISPNIA 133
           EM     S +++
Sbjct: 630 EMLAEGFSADVS 641



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+AA  LF  L+ +GL+PD+ TYN +I G C    LDEA +LF K+       +   +  
Sbjct: 551 LEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNT 610

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +I  F +      AT +  +ML +G  A+V T + +++
Sbjct: 611 IIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVE 648



 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A KLF ++ + G   D   YNTII G+   N    A QL +++       +
Sbjct: 580 LCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSAD 639

Query: 62  SITFTILIDAFCKEG 76
             T T++++    +G
Sbjct: 640 VSTTTLIVEMLSDDG 654


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K     A  +L G + D G +P ++T+ T++ GYC   + DEA+++F  +   +++PN
Sbjct: 427 LCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPN 486

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  LID  CK   +D A  +F +M EK   ANV TY+ L+ G    +  + AF++ +
Sbjct: 487 TVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDKKMAEKAFELMD 546

Query: 122 EMCENNISPN 131
            M E   +PN
Sbjct: 547 RMREERCTPN 556



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +L  ++   GL+PD+ TYNT++ G C         +L   +     +P+ +TF  
Sbjct: 398 LHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGT 457

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +CK G+ D+A  +F  M E   + N V Y+ LID   KS+ +  A  +++EM E N
Sbjct: 458 LVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKN 517

Query: 128 ISPNI 132
           +  N+
Sbjct: 518 VPANV 522



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A++LF ++ D G  PD + Y T+I G     RL +A      +     K ++  + 
Sbjct: 327 NVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYN 386

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI  FC++ ++ +A  +  +M   G + +V TY+ L+ G  K+ +  +  ++   M ++
Sbjct: 387 ILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDD 446

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
              P++            AG+  EA++++ SM    I P+ ++ +TL D+
Sbjct: 447 GCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDF 496



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 22/180 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQ- 57
           L K  H+  ALK+  +++  G +  PDI   NT++ G C + RL +A+    E++  V  
Sbjct: 176 LCKSGHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHG 235

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             PN++T+  L DAFC+ G +  A  + ++M ++G   NV+T + +I G  +   + +A 
Sbjct: 236 CAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAAL 295

Query: 118 DVYEEMCENNISPNIAGRPTE----------------AMQLYDSMLRNGIMPDGLLLSTL 161
           + + E  +  + P   G                    AM+L+  M  +G  PD ++  T+
Sbjct: 296 EFFRE--KRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTM 353



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--VQLK 59
           L +  +L    +LF  + D  ++PD++TY  ++ G C    + +A+++ ++++     + 
Sbjct: 141 LGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVC 200

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLE--KGPKANVVTYSCLIDGYFKSQNMKSAF 117
           P+      ++D  CK GR+  A +   + +    G   N VTY+CL D + +  ++  A 
Sbjct: 201 PDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMAC 260

Query: 118 DVYEEMCENNISPNI 132
            +   M +  ++PN+
Sbjct: 261 KIVARMEKEGVAPNV 275



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDI----ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           + AAL+ F +   R + P+     +TY+T+   +   N +D A++LF ++     +P+++
Sbjct: 291 VGAALEFFRE--KRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAV 348

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  +I    + GR+ DA    + M + G K +   Y+ LI G+ + + +  A+++ EEM
Sbjct: 349 MYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEM 408

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               + P++            AG  +   +L   M+ +G  P  +   TL
Sbjct: 409 KGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTL 458



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 42/78 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+KLF ++ ++ +  ++ TYN ++ G       ++A +L +++   +  PN
Sbjct: 497 LCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPN 556

Query: 62  SITFTILIDAFCKEGRMD 79
            +T  +L++   + G  +
Sbjct: 557 YVTVDVLMEWLPEIGETE 574


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A KL   + ++ L PD+++YNT+I GY  L  + EA  LF +L    L P+
Sbjct: 305 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPS 364

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  C+ G +D A  +  +M++ GP  +V T++ L+ G+ K  N+  A ++++
Sbjct: 365 VVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFD 424

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P+              G P++A  + + ML  G  PD +  +   D
Sbjct: 425 EMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFID 478



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L  A +L  ++   GL PD +TY +II  +     L +A  +F ++    + P+
Sbjct: 480 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPS 539

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T+LI ++   GR+  A + F +M EKG   NV+TY+ LI+G  K + M  A+  + 
Sbjct: 540 VVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFT 599

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    ISPN              G   EA++LY  ML   I PD    S L  +
Sbjct: 600 EMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKH 654



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 85/160 (53%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A +L  ++  RG  P ++TYNTI+ G C   R+ +A +L + +    L P+ +++ 
Sbjct: 275 QLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYN 334

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  + + G + +A ++F+++  +G   +VVTY+ LIDG  +  ++  A  + +EM ++
Sbjct: 335 TLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKH 394

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              P++             G    A +L+D ML  G+ PD
Sbjct: 395 GPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPD 434



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +D A +++  + + G+ P ++TYNT++  +C   ++ EA+QL  ++  +   PN +
Sbjct: 167 RDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDV 226

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L++     G ++ A  +  +ML  G + +  TY  LI GY +   +  A  + EEM
Sbjct: 227 TYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEM 286

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 P +             GR ++A +L D M+   +MPD +  +TL
Sbjct: 287 LSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTL 336



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 47/198 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF +L  RGL P ++TYNT+I G C +  LD A++L +++      P+  TFTIL+ 
Sbjct: 349 AFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVR 408

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKAN---------------------------------- 96
            FCK G +  A  +F +ML +G + +                                  
Sbjct: 409 GFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPP 468

Query: 97  -VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLY 143
            ++TY+  IDG  K  N+K A ++ ++M  N + P+            +AG   +A  ++
Sbjct: 469 DLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVF 528

Query: 144 DSMLRNGIMPDGLLLSTL 161
             ML  GI P  +  + L
Sbjct: 529 LEMLSKGIFPSVVTYTVL 546



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +L  ++   GLE    TY+ +I GYC   +LDEA +L E++      P  +T+  
Sbjct: 241 LEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNT 300

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   CK GR+ DA  +   M+ K    ++V+Y+ LI GY +  N+  AF ++ E+    
Sbjct: 301 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRG 360

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + P++             G    AM+L D M+++G  PD    + L 
Sbjct: 361 LVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILV 407



 Score = 42.4 bits (98), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A K F ++  +G+ P+  TY  +I   C+L    EA++L++ +   +++P+
Sbjct: 585 LCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPD 644

Query: 62  SITFTILIDAFCKE 75
           S T + L+    K+
Sbjct: 645 SCTHSALLKHLNKD 658


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  ++ A  +  ++ ++G+EPD++TYN  I GYC      +A+ LF+++    ++P 
Sbjct: 367 LFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPT 426

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID F K  RM +A   F K +++G   +++ ++ LIDG+  + N+  AF + +
Sbjct: 427 VETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLK 486

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P+     T            EA +L D M   GI PD +  +TL
Sbjct: 487 EMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTL 538



 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            +AA K+F  + D+ L+PD  TYN+ I   C   R++EA  +  KL    L PN++T+  
Sbjct: 268 FEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNA 327

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  C +G +D A     +M+ +G  A+V TY+ LI   F  + ++ A D+ +EM E  
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++             G   +A+ L+D M+   I P     ++L D
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLID 435



 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A + F +    G+ PDII +N +I G+C    +D A QL +++   ++ P+ +
Sbjct: 439 KRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEV 498

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  L+  +C+E ++++A  +  +M E+G K + ++Y+ LI GY K  +MK A +V++EM
Sbjct: 499 TFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEM 558

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
                 P +             G    A +L   M   GI PD
Sbjct: 559 LSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPD 601



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +E     A    G +   G++P+++TYNT+I GYC   + + A ++F+ +    LKP
Sbjct: 226 ILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKP 285

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  T+   I   CKE R+++A+ +  K+LE G   N VTY+ LIDG     ++  AF   
Sbjct: 286 DCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYR 345

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           +EM    I  ++              R  EA  +   M   G+ PD      +  YN+Q 
Sbjct: 346 DEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPD------VVTYNIQI 399

Query: 169 SG 170
           +G
Sbjct: 400 NG 401



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A  +  +L + GL P+ +TYN +I G C+   LD+A    +++    +  +
Sbjct: 297 LCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVAS 356

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LI A   E R+++A  M  +M EKG + +VVTY+  I+GY +  N K A  +++
Sbjct: 357 VFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFD 416

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E NI P +              R +EA + +   ++ G++PD ++ + L D
Sbjct: 417 EMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALID 470



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++ A KL  ++ +RG++PD I+YNT+I GY     + +A+++F+++  +   P  +
Sbjct: 509 RERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLL 568

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           T+  LI  + K G  D A  +  +M  KG   +  TY  +I+ 
Sbjct: 569 TYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEA 611



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 12/130 (9%)

Query: 46  AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           A  ++E++  + +K + +TF I+I+  C+EG+   A      M   G K NVVTY+ +I+
Sbjct: 201 AWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVIN 260

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           GY      ++A  +++ M + N+ P+               R  EA  +   +L +G++P
Sbjct: 261 GYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVP 320

Query: 154 DGLLLSTLAD 163
           + +  + L D
Sbjct: 321 NAVTYNALID 330



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 18/168 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  ++ ++    ++  I+T+N +I   C   +  +A      +    +KPN +T+  +I+
Sbjct: 201 AWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVIN 260

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+ + A+ +F  M +K  K +  TY+  I    K + ++ A  V  ++ E+ + P
Sbjct: 261 GYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVP 320

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           N              G   +A    D M+  GI      ++++  YNL
Sbjct: 321 NAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGI------VASVFTYNL 362


>gi|357130244|ref|XP_003566760.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Brachypodium distachyon]
          Length = 579

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 70/113 (61%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           +L ++G EPD++TYNT++ GYC   +L +A+ LF  +    ++P+ ++ T+L+D  CK G
Sbjct: 239 ELEEQGFEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCKAG 298

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           R++DA  MF +M+  G   + + YS LI GY   Q ++ A  +  EM  + +S
Sbjct: 299 RLNDARRMFDRMVHSGVSPDAIAYSVLIAGYCNEQRVREARLLLMEMVGSGLS 351



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD + +N ++       R DE       +   +++PN+ TF IL+ A C+    + A   
Sbjct: 177 PDTVAFNALLAALSRAGRFDELWAARAVMARAEVRPNTHTFNILVTALCRGEDAERAQGF 236

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             ++ E+G + +VVTY+ L+ GY +   ++ A  ++  M    + P++            
Sbjct: 237 LEELEEQGFEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCK 296

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           AGR  +A +++D M+ +G+ PD +  S L
Sbjct: 297 AGRLNDARRMFDRMVHSGVSPDAIAYSVL 325



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 8/123 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL LFG +  RG+EPD++++  ++ G C   RL++A ++F+++    + P++I +++
Sbjct: 265 LQDALHLFGVMPPRGVEPDLVSHTVLMDGLCKAGRLNDARRMFDRMVHSGVSPDAIAYSV 324

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C E R+ +A ++  +M+  G  +       +I+ + K   + +        C N 
Sbjct: 325 LIAGYCNEQRVREARLLLMEMVGSGLSSEGFALRAVIESHVKVGKLLT--------CLNL 376

Query: 128 ISP 130
           +SP
Sbjct: 377 VSP 379



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 47/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------------- 46
           L K   L+ A ++F ++   G+ PD I Y+ +I GYC+  R+ EA               
Sbjct: 294 LCKAGRLNDARRMFDRMVHSGVSPDAIAYSVLIAGYCNEQRVREARLLLMEMVGSGLSSE 353

Query: 47  -----------VQLFEKLTCVQL-----KPNSI----TFTILIDAFCKEGRMDDATMMFS 86
                      V++ + LTC+ L     K   +    ++  LI A C++ R   A  +F 
Sbjct: 354 GFALRAVIESHVKVGKLLTCLNLVSPLRKYGVVIPLESYNCLIGALCEDMRPHAARGLFK 413

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+E G   ++  Y+ ++D   +  ++  A DV  EM    + P+              G
Sbjct: 414 WMVEDGHSPSLEMYNMILDCLCQCDSVDDALDVKVEMSSREVRPDFHTYQALVTCLCRLG 473

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  +   +   M+ +G+ P+  + + L
Sbjct: 474 KSLDGKSVMAEMIESGLQPNEAICTAL 500



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA  LF  + + G  P +  YN I+   C  + +D+A+ +  +++  +++P+  T+  L+
Sbjct: 407 AARGLFKWMVEDGHSPSLEMYNMILDCLCQCDSVDDALDVKVEMSSREVRPDFHTYQALV 466

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--- 126
              C+ G+  D   + ++M+E G + N    + L+ G+ K   +  A  + +    +   
Sbjct: 467 TCLCRLGKSLDGKSVMAEMIESGLQPNEAICTALVCGFCKEGYLDRAELILKAFVLDFQL 526

Query: 127 --NISPNIAGRP-------TEAMQLYDSMLRNGIMP 153
             N S N   R        +E+++L + ML  G +P
Sbjct: 527 HCNESYNALMRAYCMTRSTSESLELQNRMLDLGFVP 562


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 15/165 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  LD A K+  ++  RG  PD++TYN+ I G C  +R+DEA +   ++    + P+
Sbjct: 125 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPD 181

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++T +I+  CK G +D A+ M  +M  +G   +VVTYS LIDG+ K   ++ A  + +
Sbjct: 182 VVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLD 241

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M +    PN+             G   +A  +   M R G  PD
Sbjct: 242 SMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPD 286



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD+A ++  Q+T+RG  PD++TY+++I G+C    ++ A+ L + +  +  +PN
Sbjct: 192 LCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPN 251

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L+ A  + G +  A  M  +M  +G   +VV+Y+  IDG  K++ +K A  V++
Sbjct: 252 MVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFD 311

Query: 122 EMCENNISPN 131
            M E   +PN
Sbjct: 312 RMVERGCTPN 321



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 15/169 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A K   ++    + PD+++Y T+I G C    LD A ++ +++T     P+ +T++
Sbjct: 165 RVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYS 221

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID FCK G ++ A  +   ML+ G + N+V Y+ L+    +  ++  A D+  EM   
Sbjct: 222 SLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERR 281

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +P++            A R  +A  ++D M+  G  P+    S L +
Sbjct: 282 GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVE 330



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L+ A +L G++ + G  PD   YN +I GY       +A +   ++      P 
Sbjct: 20  LCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPT 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T ++D  CK GR  DA  +  +M +KG   N+ TY+ +++G  + + +  A  + E
Sbjct: 80  VVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLE 139

Query: 122 EMCENNISPNI 132
           EM      P++
Sbjct: 140 EMAVRGYFPDV 150



 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +F ++ +RG  P+  +Y+ ++   C    LD+A+ L E+        +
Sbjct: 297 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVD 356

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + +T+L+D  CK GR D+A  +FSK+L EK  + +V  Y+ ++D + K + +  A  ++
Sbjct: 357 ILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIH 416

Query: 121 EEMCENN----ISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++M E N    ++ NI         R ++A  +  +M+  G +PD +   TL D
Sbjct: 417 KQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVD 470



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 15/165 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K   ++      P ++TY  I+ G C   R  +AV+L +++      PN  T+ ++++
Sbjct: 64  AFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVE 123

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+E ++D+A  M  +M  +G   +VVTY+  I G  K   +  A      M    ++P
Sbjct: 124 GLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTP 180

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++    T             A ++ D M   G  PD +  S+L D
Sbjct: 181 DVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLID 225



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 8/135 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKL---TCVQ 57
           L K    D A  LF ++ D  + EPD+  YN ++  +C   ++D+A+Q+ +++    C  
Sbjct: 367 LCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC- 425

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
              N +T+ IL+   C + R+ DA  M   M+++G   + VTY  L+D   K     +A 
Sbjct: 426 ---NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAAL 482

Query: 118 DVYEEMCENNISPNI 132
           +++EE  +    P++
Sbjct: 483 ELFEEAVKGGCVPDV 497



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 14/173 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KP 60
           L K+  LD A+ L  Q  ++    DI+ Y  ++ G C   R DEA  LF K+   ++ +P
Sbjct: 332 LCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEP 391

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +   + +++D+ CK  ++D A  +  +MLE+    NVVT++ L+ G      +  A  + 
Sbjct: 392 DVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETML 450

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             M +    P+              G+   A++L++  ++ G +PD +  S L
Sbjct: 451 LTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSAL 503



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 20/159 (12%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D G  PD +TY T++   C   +   A++LFE+       P+ +T++ LI     E  
Sbjct: 453 MVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENM 512

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------ 131
            ++A ++F+K+       +V  ++ +I GY ++ +      ++ E+ E+++ PN      
Sbjct: 513 AEEAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGK 565

Query: 132 -IAGRPTEAMQ------LYDSMLRNGIMPDGLLLSTLAD 163
            I+G+  +A        L+D  ++ G  PD  + +TL D
Sbjct: 566 EISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLID 604



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 12/149 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D+  +PD  T+  ++ G C  N+L++A QL  ++  +   P+   +  LI  + K   
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
              A    ++M++      VVTY+ ++DG  K+   K A  + +EM +   SPNI     
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPD 154
                    +  EA ++ + M   G  PD
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPD 149



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+ L   +   G  P+++ YN+++     L  + +A  +  ++      P+ +++ 
Sbjct: 232 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 291

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             ID  CK  R+  A  +F +M+E+G   N  +YS L++   K + +  A  + E+  E 
Sbjct: 292 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREK 351

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIM-PDGLLLSTLAD 163
               +I             GR  EA  L+  +L   I  PD    + + D
Sbjct: 352 YQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLD 401



 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICG-YCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D  LKLF +L +  +EP+  T+   I G       L +A  LF++       P+      
Sbjct: 542 DLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANT 601

Query: 68  LIDAFCKEGRMDDATMMFSKM 88
           LID F K G +++A  +F  M
Sbjct: 602 LIDVFAKCGDLEEARRIFYSM 622


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 22/174 (12%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A +++ ++ + GL+PD++ +NT+I G     R  EAV++FE +      PN  T+T
Sbjct: 339 NLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYT 398

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   CK G+MD A   F +M + G + +V TY+CL+ GY  ++ M     + EEM + 
Sbjct: 399 MLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQK 458

Query: 127 NISPNIAGR--------------PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              P+  GR              P +A ++Y  M++ G+ P      T+  YN+
Sbjct: 459 GCPPD--GRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEP------TIHTYNM 504



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++ F ++ D G +PD+ TY  ++ GY +  R+D    L E++T     P+  
Sbjct: 406 KRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGR 465

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEE 122
           T+  LI         DDA  ++ KM++KG +  + TY+ ++  YF   +N      V+EE
Sbjct: 466 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEE 525

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           M    I P++             GRP EA +  + M++ G+
Sbjct: 526 MHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGM 566



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F ++ DR   PD+ +Y  ++  +C+   L EA +++ ++    LKP+ +    +I+
Sbjct: 309 ANQVFDRMRDR-YAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIE 367

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              +  R  +A  MF  M  KGP  NV TY+ LI  + K   M  A   +EEM +    P
Sbjct: 368 GLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQP 427

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDG----LLLSTLADYNLQSSGSQ 172
           ++            A R      L + M + G  PDG     L+  L + N+    ++
Sbjct: 428 DVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAAR 485



 Score = 43.9 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTI 67
           D A +++ ++  +GLEP I TYN ++  Y    R       ++E++    + P+  ++T+
Sbjct: 481 DDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTV 540

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
            I+   + GR ++A     +M++KG K   + Y+
Sbjct: 541 FINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYN 574



 Score = 42.4 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 15/138 (10%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +   I  + +   +  AV +FE +          +F  L+ A  +EG   +A  +F +M 
Sbjct: 258 FKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMR 317

Query: 90  EK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           ++  P  ++ +Y+ L+  +  ++N+  A  V+ EM EN + P++              R 
Sbjct: 318 DRYAP--DLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR 375

Query: 137 TEAMQLYDSMLRNGIMPD 154
            EA+++++ M   G  P+
Sbjct: 376 PEAVKMFELMKAKGPAPN 393


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 91/157 (57%), Gaps = 12/157 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L G++ + G+EP+++ Y++++ GYC   R ++  ++F +++   ++P+ + +T 
Sbjct: 166 VDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTG 225

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+ CK G+   A  +   M+ +G + NVVTY+ LI+   K  ++K A  V ++M E  
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKG 285

Query: 128 ISPNIAGRPT------------EAMQLYDSMLRNGIM 152
           ++P++    T            EAM L + M+R  I+
Sbjct: 286 VAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGYII 322



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ L   +   G+  D++TY T+I G C    +D+AV+L  ++    ++PN + ++ L
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSL 191

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +  +CK GR +D   +F +M EKG + +VV Y+ LID   K    K A  V + M    +
Sbjct: 192 LQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGL 251

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            PN+             G   EA+ +   M   G+ PD +  +TL
Sbjct: 252 EPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSITFTILIDAFCKEGRMDDAT 82
           D ++YNT++   C     D A  L   ++       +PN++++T+L+ A C + R D A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +   M   G +A+VVTY  LI G   +  +  A ++  EMCE+ I PN+          
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +GR  +  +++  M   GI PD ++ + L D
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLID 228



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P+ ++Y  ++   C+  R D+AV L   +    ++ + +T+  LI   C    +D A  
Sbjct: 112 RPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +  +M E G + NVV YS L+ GY KS   +    V+ EM E  I P++           
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 133 -AGRPTEAMQLYDSMLRNGIMPD 154
             G+  +A  + D M+R G+ P+
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPN 254


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+ + Y T++ GYC + R+DE + LF ++    +KP++I + I
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 609

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   + GR   A + F +M E G   N  TYS ++ G FK++    A  +++E+   N
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           +  +       IAG     R  EA  L+ S+ R+G++P
Sbjct: 670 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 707



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 73/121 (60%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + GL P  + Y+ ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 518 AQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVN 577

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML+KG K + + Y+ +IDG F++     A   + EM E+ I+ 
Sbjct: 578 GYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAM 637

Query: 131 N 131
           N
Sbjct: 638 N 638



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++ F Q+ D+G+ PD   Y+ +I G+C+   L +A +L  ++    +  + + F+ 
Sbjct: 445 MDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSS 504

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK GR+ DA  +F   +  G     V YS L+DGY     M+ A  V++ M    
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I PN              GR  E + L+  ML+ GI P  +L + + D
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIID 612



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 22/184 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFT 66
           AL  FGQL   GL  DII  N ++ G+C   R DEA+ +      +L CV   P+  +++
Sbjct: 130 ALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCV---PDVFSYS 186

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           IL+ + C +G+   A  +   M E G     +VV Y+ +IDG+FK  ++  A D+++EM 
Sbjct: 187 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 246

Query: 125 ENNISPNIAGRPT--------EAMQLYDSMLR----NGIMPDGLLLSTLADYNLQSSGSQ 172
           +  I P+     +         AM   ++ LR     G++P+    + L  Y   S+G  
Sbjct: 247 QRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI-YGYSSTGQW 305

Query: 173 EHCI 176
           +  +
Sbjct: 306 KEAV 309



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C +D    LF  +   G+ P I T+N +I  Y +   LD+A+ +F ++    +KPN +
Sbjct: 372 KGCLVDMT-DLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVL 430

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +I A C+ G+MDDA   F++M+++G   +   Y CLI G+    ++  A ++  E+
Sbjct: 431 TYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEI 490

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N +  +I             GR  +A  ++D  +  G+ P  ++ S L D
Sbjct: 491 MNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMD 542



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A     Q+ ++G+ P+  TYN +I GY S  +  EAV++F+++    + P+
Sbjct: 264 LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPD 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +L+ + CK G++ +A  +F  M  KG   +V +Y+ +++GY     +    D+++
Sbjct: 324 VVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD 383

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  + I+P I             G   +AM +++ M  +G+ P+ L  +T+
Sbjct: 384 LMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTV 435



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G+  DI+ +++II   C L R+ +A  +F+    V L P ++ +++L+D
Sbjct: 483 AKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMD 542

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+M+ A  +F  M+  G + N V Y  L++GY K   +     ++ EM +  I P
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602

Query: 131 NI------------AGRPTEAMQLYDSMLRNGI 151
           +             AGR   A   +  M  +GI
Sbjct: 603 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 635



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD++ YNT+I G+     +++A  LF+++    + P+ +T++ ++ A CK   MD A   
Sbjct: 217 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAF 276

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M+ KG   N  TY+ LI GY  +   K A  V++EM   +I P++            
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCK 336

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G+  EA  ++D+M   G  PD
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPD 358



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ DIIT NT+I G     R++EA  LF  ++   L P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++I+I    KEG +++A  MFS M   G + +    + ++    K   +  A     
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 769 KIDERNFS 776



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  +  TY+ ++ G       DEA+ LF++L  + +K + IT   +I    +
Sbjct: 627 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 686

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +   G    VVTYS +I    K   ++ A D++  M      P+
Sbjct: 687 TRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A  +   + D+G+ P+  TYN +I GYCSL +L+EAV+L +K++   L+P+
Sbjct: 248 LCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPD 307

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LI  +CK GR  +A  +F  M+ KG K N   Y  L+ GY     +    D+ +
Sbjct: 308 VVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLD 367

Query: 122 EMCENNI-----SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  + I     + NI        G   +AM  +  M +NG+ PD +  ST+
Sbjct: 368 LMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 419



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSITF 65
           DA   +F ++ + G  PD+ +YN +I G C   +  EA++L   +T        PN +++
Sbjct: 147 DAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSY 206

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           + +ID F KEG +D A  +F +M+ +G   +VVTYS LIDG  K+Q M  A  + + M +
Sbjct: 207 STIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFD 266

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
             + PN              G+  EA++L   M  +G+ PD +    L  Y
Sbjct: 267 KGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQY 317



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 12/146 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ +RG+ PD I  NTI+   C   R+ EA   F+ +  + +KPN +++  LID +C  G
Sbjct: 473 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVG 532

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-----ISPN 131
           +MD++   F +M+  G + +  TY+ L++GYFK+  ++ A  +Y EM   +     I+ N
Sbjct: 533 KMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSN 592

Query: 132 I-------AGRPTEAMQLYDSMLRNG 150
           I       AGR   A +LY  M+  G
Sbjct: 593 IILHGLFQAGRIVAARELYMKMVDRG 618



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 79/131 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A   F  +   G++P++++YNT+I GYC + ++DE+++ F+++  + L+P+
Sbjct: 493 LCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPD 552

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T+  L++ + K GR++DA  ++ +M  K  K   +T + ++ G F++  + +A ++Y 
Sbjct: 553 SWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYM 612

Query: 122 EMCENNISPNI 132
           +M +      I
Sbjct: 613 KMVDRGTQLRI 623



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 77/125 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   + AA +L+ ++ DRG +  I TYNT++ G C  + +DEA+++FE L   + + +
Sbjct: 598 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 657

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF I+I+A  K GR+D+A  +FS M+ +GP  +V+TYS +I    +   ++ + D++ 
Sbjct: 658 VWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFL 717

Query: 122 EMCEN 126
            M +N
Sbjct: 718 SMEKN 722



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 47/195 (24%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+  F ++   GL PD+++Y+T+I   C + R+++AV  F ++    L PN I
Sbjct: 390 KHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNII 449

Query: 64  TFTILI-----------------------------------DAFCKEGRMDDATMMFSKM 88
           +FT LI                                   D  CKEGR+ +A   F  +
Sbjct: 450 SFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMV 509

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
           +  G K NVV+Y+ LIDGY     M  +   ++ M    + P+              GR 
Sbjct: 510 IHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRV 569

Query: 137 TEAMQLYDSMLRNGI 151
            +A+ LY  M R  +
Sbjct: 570 EDALALYREMFRKDV 584



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 15/166 (9%)

Query: 11  ALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           AL+L   +T  G     P++++Y+TII G+     +D+A  LF+++      P+ +T++ 
Sbjct: 184 ALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSS 243

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK   M+ A  +   M +KG   N  TY+ +I GY     ++ A  + ++M  + 
Sbjct: 244 LIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSG 303

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++             GR  EA  ++DSM+R G  P+  +   L
Sbjct: 304 LQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHIL 349



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            +N +IC Y     +D+A+  F ++    L+P+ ++++ +I   CK GR++DA   F++M
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           + +G   N+++++ LI G       K   ++  EM    I P+              GR 
Sbjct: 440 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRV 499

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EA   +D ++  G+ P+ +  +TL D
Sbjct: 500 VEAQDFFDMVIHIGVKPNVVSYNTLID 526



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ++K F ++   GL PD  TYN ++ GY    R+++A+ L+ ++    +K  +IT  I
Sbjct: 534 MDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNI 593

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++    + GR+  A  ++ KM+++G +  + TY+ ++ G  ++  +  A  ++E++    
Sbjct: 594 ILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE 653

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
              ++             GR  EA  L+ +M+  G +P
Sbjct: 654 FELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVP 691



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 63/122 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL++F  L  +  E D+ T+N +I     + R+DEA  LF  +      P+ IT+++
Sbjct: 639 VDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSL 698

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I +  +EG ++++  +F  M + G  A+    + +I    +  +++ A     ++ E N
Sbjct: 699 MIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKN 758

Query: 128 IS 129
            S
Sbjct: 759 FS 760



 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 77/217 (35%), Gaps = 67/217 (30%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE----------AVQLFEKLT---CVQ 57
           AL LF +L  +     +  +N+++     + R D           AV LF  +       
Sbjct: 33  ALNLFDELLPQARPASVHAFNSVLT---VVARADSSSSPRHSAALAVSLFNTMARSGVNM 89

Query: 58  LKPNSITFTILIDAFCKEGRM-----------------------------------DDAT 82
           +  N     ILI  FC  GR+                                   DDA 
Sbjct: 90  MAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAM 149

Query: 83  -MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN---NISPNIA----- 133
            M+F +M E G   +V +Y+ LI G    +  + A ++   M  +   N SPN+      
Sbjct: 150 DMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTI 209

Query: 134 -------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                  G   +A  L+D M+  G  PD +  S+L D
Sbjct: 210 IDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLID 246



 Score = 36.2 bits (82), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 45/103 (43%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +D A  LF  +  RG  P +ITY+ +I        L+E+  LF  +       +
Sbjct: 668 LLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAAD 727

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           S    ++I    ++G +  A    +K+ EK       T + LI
Sbjct: 728 SHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALLI 770


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  F Q+   GL P ++TYN +ICG+C +  +  AV+ F  +    L P  +T+TILI 
Sbjct: 197 ALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIA 256

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AF KE  MD A MM S+M + G + +V +Y  L+        M  A  +++ M    + P
Sbjct: 257 AFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKP 316

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N              G   +A++L   M +NG++P+
Sbjct: 317 NSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPN 352



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 75/124 (60%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
             +A  LF ++  +G+  ++++YN +I G C  ++L +AVQLFE +    ++P+ +TF +
Sbjct: 124 FKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNL 183

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID + K G+M +A   F++M   G   +VVTY+ LI G+ + +++  A   + +M E  
Sbjct: 184 LIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERG 243

Query: 128 ISPN 131
           ++P 
Sbjct: 244 LAPT 247



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 68/126 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H +    LF ++   G+EP++ TYN +I  +C       A  LF+++    +  N +++ 
Sbjct: 88  HREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYN 147

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI   C+  ++ DA  +F  M  +G + ++VT++ LIDGY K+  M +A   + +M   
Sbjct: 148 ILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAA 207

Query: 127 NISPNI 132
            + P++
Sbjct: 208 GLPPSV 213



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A++LF  +   G+ P I+T+N +I GY    ++  A+  F ++    L P+
Sbjct: 153 LCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPS 212

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FC+   +  A   F  M E+G     VTY+ LI  + K   M  AF +  
Sbjct: 213 VVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLS 272

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLL 157
           EM +  +  ++             G+   A +L+ SM   G+ P+ +L
Sbjct: 273 EMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVL 320



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +   G+ P+ +TY  +I GY      +    LF ++    ++PN  T+  LI 
Sbjct: 57  ARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIG 116

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ G    A ++F +M  KG   NVV+Y+ LI G  +   +K A  ++E M    I P
Sbjct: 117 EWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRP 176

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMP 153
           +I            AG+   A+  ++ M   G+ P
Sbjct: 177 SIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPP 211



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + +AL +  + T  G    D+     ++   C    + EA ++F+ +  + + PN +T+T
Sbjct: 18  VRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYT 77

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--- 123
            LI+ +   G  +    +F++M   G + N+ TY+CLI  + ++   KSA  +++EM   
Sbjct: 78  ALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVK 137

Query: 124 --CENNISPN--IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               N +S N  IAG     +  +A+QL+++M R GI P  +  + L D
Sbjct: 138 GVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLID 186



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A  +  ++   GLE D+ +Y  ++   C   ++  A +LF+ +    +KPNS+
Sbjct: 260 KENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSV 319

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            + ++I  + +EG    A  +  +M + G   NV +Y CL
Sbjct: 320 LYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASY-CL 358


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 12/153 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ +  L P ++TYN++I G C +  LD A +L   +    + P+  T+++ ID
Sbjct: 198 AMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFID 257

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+GR+++A ++F+ + EKG KAN V Y+ LIDGY K+  M  A  + + M   +  P
Sbjct: 258 TLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLP 317

Query: 131 N-------IAG-----RPTEAMQLYDSMLRNGI 151
           N       I G     +  EA+ L +SM++ G+
Sbjct: 318 NSSTYNALIDGLCKERKVQEALLLMESMIQKGL 350



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A  LF  L ++G++ + + Y  +I GYC   ++D+A  L +++      PN
Sbjct: 259 LCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPN 318

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T+  LID  CKE ++ +A ++   M++KG K  V TY+ LI    K  +   A  + +
Sbjct: 319 SSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILD 378

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  +   P++             G   EA  +   M   G+MPD L  + + D
Sbjct: 379 QMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVID 432



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD+A +L   + + G+ PD  TY+  I   C   R++EA  LF  L    +K N + +T
Sbjct: 229 YLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYT 288

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +CK G+MDDA  +  +ML +    N  TY+ LIDG  K + ++ A  + E M + 
Sbjct: 289 ALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQK 348

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +   +             G    A ++ D M+ +G  PD
Sbjct: 349 GLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPD 388



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+   ++  ++ ++GL P + TYN +I GYC    ++ A ++ + +      PN  
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNER 180

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FC++  +  A  + SKMLE     +VVTY+ LI G  K   + SA+ +   M
Sbjct: 181 TYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLM 240

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EN + P+              GR  EA  L++S+   GI  + ++ + L D
Sbjct: 241 NENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALID 292



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 70/125 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A  +F  +  +G   + ++Y  +I G C + R+DE + +F+K+      P   T+T+
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTV 79

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++ A  + GR  +A  +FS+M E+G + N+ TY+ +I+   K   ++    + +EM E  
Sbjct: 80  IVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKG 139

Query: 128 ISPNI 132
           + P++
Sbjct: 140 LVPSV 144



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D  + +F ++ +    P + TY  I+       R  EA+ LF ++     +PN  T+T
Sbjct: 54  RVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYT 113

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ++I+A CKE ++++   +  +M+EKG   +V TY+ LIDGY K   +++A ++ + M  N
Sbjct: 114 VMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSN 173

Query: 127 NISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + +PN       I G         AM L   ML + + P  +  ++L
Sbjct: 174 SCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSL 220



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 41/201 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++KE   D A ++  Q+   G +PD+  Y   I  +C+   + EA  +   +    + P+
Sbjct: 364 MLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPD 423

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ---------- 111
           ++T+T++IDA+   G ++ A  +  +M + G   +  TYSCLI    K +          
Sbjct: 424 ALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVAL 483

Query: 112 -------------------NMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
                                ++A +++E+M E+  SPNI             GR   A 
Sbjct: 484 CDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQ 543

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           +L+D M   G+ P   + ++L
Sbjct: 544 KLFDHMNERGVSPSEAIYNSL 564



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  AL L   +  +GL+  + TY  +I         D A ++ +++     +P+
Sbjct: 329 LCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPD 388

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T  I AFC  G + +A  M S M E+G   + +TY+ +ID Y     +  AFDV +
Sbjct: 389 VYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLK 448

Query: 122 EMCENNISPN 131
            M +    P+
Sbjct: 449 RMFDTGCDPS 458



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 21/152 (13%)

Query: 33  IICGYCSL---------NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           ++ GYC L         N ++ A  +F  +     + N +++T LI   C+ GR+D+   
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F KM E      V TY+ ++   F+S     A +++ EM E    PNI           
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              +  E  ++ D M+  G++P     + L D
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALID 152



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + AL+LF ++ + G  P+I TY  +I G C + RL  A +LF+ +    + P+   +  
Sbjct: 504 FETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNS 563

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  C+ G   DA  +   M+E G    + + + L  G ++  + + A  V+  + +  
Sbjct: 564 LLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCG 623

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGI 151
            + +          L D +L+NG+
Sbjct: 624 YNDDEVAWKI----LIDGLLKNGL 643



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A KLF  + +RG+ P    YN+++   C L    +AV+L   +      P 
Sbjct: 533 LCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPL 592

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
             +  +L     +EG  + A ++FS +L+ G   + V +  LIDG  K+
Sbjct: 593 LESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKN 641



 Score = 42.7 bits (99), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 44/96 (45%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L G + + G  P + + N + CG       ++A  +F  L       + + + ILID
Sbjct: 577 AVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILID 636

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
              K G  D  + +   M  +G + +  TY  LI+G
Sbjct: 637 GLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEG 672


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE  + +AL  + ++ + G+ P++ITY T+I G+C  N  D A+++  ++    L+ +
Sbjct: 603 FIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELD 662

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LID FCK+  ++ A+ +FS++L+ G   N V Y+ LI GY    NM++A ++ +
Sbjct: 663 IAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQK 722

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    IS ++             GR   A+ LY  M   GI+PD ++ + L
Sbjct: 723 RMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVL 774



 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 76/129 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ +LD A  +F  + D GL+P++ITY+ ++ GY      + A  +F+++    + P+  
Sbjct: 500 RQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDF 559

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ I I+  CK GR  +A  M  K +EKG     +TY+ ++DG+ K  ++ SA   Y EM
Sbjct: 560 TYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREM 619

Query: 124 CENNISPNI 132
           CE+ +SPN+
Sbjct: 620 CESGVSPNV 628



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 12/150 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           +I TYN+++   C   ++ EA  L++K+    L P  +++  +I   C++G +D A  +F
Sbjct: 452 NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVF 511

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-----NI-------A 133
           S ML+ G K NV+TYS L+DGYFK+ + + AF V++ M + NI P     NI        
Sbjct: 512 SDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKV 571

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           GR +EA  +    +  G +P  L  +++ D
Sbjct: 572 GRTSEAQDMLKKFVEKGFVPVCLTYNSIMD 601



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ A  LF +L D GL P+ + YN++I GY +LN ++ A+ L +++    +  +  
Sbjct: 675 KKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQ 734

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID   KEGR+  A  ++S+M  KG   +++ Y+ LI+G      +++A  +  EM
Sbjct: 735 TYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEM 794

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             ++I+PN+            AG   EA +L++ ML  G+ P+      L +  ++   S
Sbjct: 795 ERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGNS 854



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +  +  ++G  P  +TYN+I+ G+     +  A+  + ++    + PN IT+T LI+
Sbjct: 577 AQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLIN 636

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK    D A  M ++M  KG + ++  Y  LIDG+ K Q++++A  ++ E+ +  +SP
Sbjct: 637 GFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSP 696

Query: 131 N-------IAGRPT-----EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N       I+G         A+ L   ML  GI  D    +TL D
Sbjct: 697 NSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLID 741



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F ++ D  + P   TYN  I G C + R  EA  + +K       P  +T+  ++D
Sbjct: 542 AFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMD 601

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F KEG +  A   + +M E G   NV+TY+ LI+G+ K+ N   A  +  EM    +  
Sbjct: 602 GFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLEL 661

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           +IA                 A  L+  +L  G+ P+ ++ ++L
Sbjct: 662 DIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSL 704



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A  L   + D+G  P   T+ ++I        + EA++L +++    ++ N +
Sbjct: 291 KNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVV 350

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             T L+  +CK+ ++  A   F KM E GP  N VTY+ LI+   K+ NM  A+D+Y +M
Sbjct: 351 VATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQM 410

Query: 124 CENNISPNI 132
              NI P +
Sbjct: 411 KNKNICPTV 419



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 85/163 (52%), Gaps = 13/163 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+ ++  AL+L  ++   G++ +++   T++ GYC  ++L  A++ F+K+      PN 
Sbjct: 325 VKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNR 384

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+ +LI+  CK G M  A  ++++M  K     V   + LI G+ K ++ + A  +++E
Sbjct: 385 VTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDE 444

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
               +I+ NI             G+ +EA  L+  ML  G+ P
Sbjct: 445 AVACDIA-NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAP 486



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  L  AL L+ +++ +G+ PDII Y  +I G C   +L+ A ++  ++    + PN
Sbjct: 743 LLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPN 802

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
              +  LI    K G + +A  + ++ML+KG   N  TY  LI+G  K  N
Sbjct: 803 VPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGN 853



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 12/183 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+ + + A K F +   RG++ D   Y+ +I  +C    ++ A  L + +      P+ 
Sbjct: 255 LKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSE 314

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            TFT +I A  K+G M +A  +  +M+  G + NVV  + L+ GY K   + SA + +++
Sbjct: 315 GTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDK 374

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M EN  SPN              G   +A  LY  M    I P   ++++L    L+   
Sbjct: 375 MNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVES 434

Query: 171 SQE 173
            +E
Sbjct: 435 REE 437



 Score = 38.9 bits (89), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 44/100 (44%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
            + DI  YN ++  Y   N+L++A+  F +L    + P       L+ A  K   + +A 
Sbjct: 170 FDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAR 229

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            ++ KM+ KG   +  T   ++    K  N + A   + E
Sbjct: 230 EVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLE 269


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 12/176 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A+ L+ ++ + GL P+++TY T+I G CS   L+ A +L   +    L PN  
Sbjct: 261 KSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEW 320

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  +LIDA CK GR+++A      +++KG K N V Y+ +ID   KS     A ++ +++
Sbjct: 321 TCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKI 380

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
                 P+       I G     +  EA+ L + M+ +G+  + +  + L D +L+
Sbjct: 381 ITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLR 436



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L      +G  P++  YN +I GYCS   L+ A+ +F+ +      PN  T+T LI 
Sbjct: 198 AVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLIC 257

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK G+++ A +++S+M+E G   NVVTY+ LI G     +++ AF +   M    ++P
Sbjct: 258 GFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAP 317

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N              GR  EA Q   S+++ GI  + ++ +++ D
Sbjct: 318 NEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMID 362



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 13/176 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF  +  RG      TY  ++ G C    + EA+ +F  +      P+S  ++I++ 
Sbjct: 128 ACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVH 187

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR  +A  + +  + KG   NV  Y+ LIDGY  + +++ A D+++ M      P
Sbjct: 188 GLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLP 247

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           N+            +G+   AM LY  M+  G+ P+ +  +TL      S G  EH
Sbjct: 248 NVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQC-SEGHLEH 302



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  L  ++   G  PD   Y+++I G C  N+L EA+ L   +    ++ N
Sbjct: 364 LCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQAN 423

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ FTILID   +E R D   M+  +M   G K +VVTY+  I  Y +   M+ A  +  
Sbjct: 424 AVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMI 483

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M ++ + PN+             G  ++A     +M+ NG  P+
Sbjct: 484 QMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPN 528



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +F  +   G  PD   Y+ ++ G C   R  EAV L          PN   +  LID
Sbjct: 163 AMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALID 222

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G ++ A  +F  M  KG   NV TY+ LI G+ KS  ++ A  +Y  M E  ++P
Sbjct: 223 GYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAP 282

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           N+             G    A +L  SM   G+ P+
Sbjct: 283 NVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPN 318



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +  G L  +G++ + + Y ++I   C   + D A  L +K+      P+
Sbjct: 329 LCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPD 388

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  ++ LID  C+E ++ +A  + + M+E G +AN V ++ LID + +     S   + +
Sbjct: 389 AHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISD 448

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    + P++             GR  +A  +   M+ +G+ P+    +TL
Sbjct: 449 RMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTL 500



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 11  ALKLFGQLTD------RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           AL   G L+D      R    ++ TY T+I  YC    L  A +    L    L P+S  
Sbjct: 52  ALARHGMLSDMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHA 111

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T  +  +C+ G    A  +F  M ++G      TY+ L+ G   +  ++ A  V+  M 
Sbjct: 112 YTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMW 171

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  +P+             AGR  EA+ L    +  G +P+  + + L D
Sbjct: 172 PDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALID 222



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E   D+   +  ++   G++PD++TY   I  YC   R+++A  +  ++    ++PN 
Sbjct: 435 LREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNL 494

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  LI  +   G +  A      M++ G K N  +Y+ L+    K  +       Y +
Sbjct: 495 TTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNS-------YHD 547

Query: 123 MCENNIS 129
           +  ++IS
Sbjct: 548 LVADSIS 554



 Score = 43.1 bits (100), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 40/96 (41%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL+    +  R   P + +Y  IIC  C       A  +F  +   +   + I + I
Sbjct: 631 LKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKI 690

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
           LID   ++G   D + + S M E+  +     YS L
Sbjct: 691 LIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIYSRL 726



 Score = 39.7 bits (91), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTII-CGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            L+ A      +    L P    Y  +I C Y  +  L EA++  + +      P   ++
Sbjct: 595 RLEEAKSFLVGMQSANLTPSEDVYTCMIECCY-RMKLLKEALRFLDSMVKRNYLPRLESY 653

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +I A C+EG    A  +F  +L K    + + +  LIDG  +  N      +   M E
Sbjct: 654 RFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGNTADCSRLLSFMEE 713

Query: 126 NNISPNIA 133
            N  P  A
Sbjct: 714 QNCRPGSA 721


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 16/176 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  L +RG+ P+I+TYNT+I G+C    +D+A +L E L   + +P+
Sbjct: 475 LCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPD 534

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  LID  C+  + ++A   F++M+E     NV+TY+ LI  +    ++  +  +  
Sbjct: 535 IFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLR 594

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
           +M  + I P+       I G     R  +A +L+DSMLR GI PD    G L+ +L
Sbjct: 595 QMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSL 650



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++   +   +L + GL  +I +YN +I   C    +D A ++F  L    + PN
Sbjct: 440 LYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPN 499

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FC+ G MD A  +   +LE   + ++ T++ LIDG  ++   ++AF  + 
Sbjct: 500 IVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFT 559

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E ++ PN+             G  + +  L   M  +GI PD    + L
Sbjct: 560 EMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNAL 611



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 64/122 (52%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           +++FGQ+   GL P    YN ++      N LD A   F++++     P+  T+ ILI  
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            C+ G +D+A  +  +M   G   NV TY+ LIDG+F ++     F V + M E N+ PN
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPN 333

Query: 132 IA 133
            A
Sbjct: 334 EA 335



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK   LD A   F Q++     PD  TYN +I G C L  +DEA++L +++  +   PN
Sbjct: 239 LIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPN 298

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILID F    R  +   +   M E+    N  T   L+ G F+      AF++  
Sbjct: 299 VFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLL 358

Query: 122 EMCE 125
           E  E
Sbjct: 359 EFVE 362



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 62/123 (50%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A   F ++ +  + P++ITYN +IC +C++  +  +  L  ++    ++P++ +F  L
Sbjct: 552 ENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNAL 611

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +  + R   A  +F  ML  G + +  TY  LI    KS     A +++  M EN  
Sbjct: 612 IQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGC 671

Query: 129 SPN 131
           +P+
Sbjct: 672 TPD 674



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 66/131 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K+  L     +F      G++P   TY T+I       +++   +  ++L    L  N
Sbjct: 405 VLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISN 464

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ++ID  CK   MD A+ MF  +  +G   N+VTY+ LI G+ ++ NM  A ++ E
Sbjct: 465 IYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLE 524

Query: 122 EMCENNISPNI 132
            + E+   P+I
Sbjct: 525 MLLESRFRPDI 535



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  Q+   G++PD  ++N +I GY   NR  +A +LF+ +  + ++P++ T+  LI + C
Sbjct: 592 LLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLC 651

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           K GR D A  +F  M E G   +  +Y+C
Sbjct: 652 KSGRHDKAREIFLSMKENGCTPD--SYTC 678



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 16/153 (10%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCKEGRMDDAT 82
           P   T+N  +   C L +LD  V       CVQ  +KP   T+  LI+A  K G+M+   
Sbjct: 393 PSSSTFNITLA--CVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGN 450

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
               +++  G  +N+ +Y+ +ID   K ++M  A +++ ++    ISPNI          
Sbjct: 451 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 510

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G   +A +L + +L +   PD    ++L D
Sbjct: 511 CRNGNMDKAQELLEMLLESRFRPDIFTFNSLID 543



 Score = 36.6 bits (83), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 39/84 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+L  Q+   G  P++ TY  +I G+ +  R  E  ++ + +    + PN  T   
Sbjct: 280 VDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRS 339

Query: 68  LIDAFCKEGRMDDATMMFSKMLEK 91
           L+    +    D A  +  + +E+
Sbjct: 340 LVHGVFRCIAPDKAFELLLEFVER 363


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 16/176 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F  L +RG+ P+I+TYNT+I G+C    +D+A +L E L   + +P+
Sbjct: 484 LCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPD 543

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  LID  C+  + ++A   F++M+E     NV+TY+ LI  +    ++  +  +  
Sbjct: 544 IFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLR 603

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
           +M  + I P+       I G     R  +A +L+DSMLR GI PD    G L+ +L
Sbjct: 604 QMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSL 659



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++   +   +L + GL  +I +YN +I   C    +D A ++F  L    + PN
Sbjct: 449 LYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPN 508

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  FC+ G MD A  +   +LE   + ++ T++ LIDG  ++   ++AF  + 
Sbjct: 509 IVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFT 568

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E ++ PN+             G  + +  L   M  +GI PD    + L
Sbjct: 569 EMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNAL 620



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           +++FGQ+   GL P    YN ++      N LD A   F++++     P+  T+ ILI  
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            C+ G +D+A  +  +M   G   NV TY+ LIDG+F ++    AF V + M E N+ PN
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPN 333

Query: 132 IA 133
            A
Sbjct: 334 EA 335



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 61/124 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK   LD A   F Q++     PD  TYN +I G C L  +DEA++L +++  +   PN
Sbjct: 239 LIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPN 298

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILID F    R  +A  +   M E+    N  T   L+ G F+      AF++  
Sbjct: 299 VFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLL 358

Query: 122 EMCE 125
           E  E
Sbjct: 359 EFVE 362



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 62/123 (50%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A   F ++ +  + P++ITYN +IC +C++  +  +  L  ++    ++P++ +F  L
Sbjct: 561 ENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNAL 620

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +  + R   A  +F  ML  G + +  TY  LI    KS     A +++  M EN  
Sbjct: 621 IQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGC 680

Query: 129 SPN 131
           +P+
Sbjct: 681 TPD 683



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 66/131 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K+  L     +F      G++P   TY T+I       +++   +  ++L    L  N
Sbjct: 414 VLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISN 473

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ ++ID  CK   MD A+ MF  +  +G   N+VTY+ LI G+ ++ NM  A ++ E
Sbjct: 474 IYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLE 533

Query: 122 EMCENNISPNI 132
            + E+   P+I
Sbjct: 534 MLLESRFRPDI 544



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  Q+   G++PD  ++N +I GY   NR  +A +LF+ +  + ++P++ T+  LI + C
Sbjct: 601 LLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLC 660

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           K GR D A  +F  M E G   +  +Y+C
Sbjct: 661 KSGRHDKAREIFLSMKENGCTPD--SYTC 687



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 16/156 (10%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCKEGRMD 79
           G  P   T+N  +   C L +LD  V       CVQ  +KP   T+  LI+A  K G+M+
Sbjct: 399 GYVPSSSTFNITLA--CVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKME 456

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------ 133
                  +++  G  +N+ +Y+ +ID   K ++M  A +++ ++    ISPNI       
Sbjct: 457 IGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLI 516

Query: 134 ------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 G   +A +L + +L +   PD    ++L D
Sbjct: 517 GGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLID 552



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 40/84 (47%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+L  Q+   G  P++ TY  +I G+ +  R  EA ++ + +    + PN  T   
Sbjct: 280 VDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRS 339

Query: 68  LIDAFCKEGRMDDATMMFSKMLEK 91
           L+    +    D A  +  + +E+
Sbjct: 340 LVHGVFRCIAPDKAFELLLEFVER 363


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 14/166 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++   G EP++ TY+ II  YC L++++EA ++F K+      PN++TF  LI 
Sbjct: 227 AQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIA 286

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMCENNIS 129
            FCK G ++DA  +F++M + G KA +VTY+ LID   K +  + +A D++ ++    ++
Sbjct: 287 GFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLT 346

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P I            A R +EAMQ +D M      P+ +  S L D
Sbjct: 347 PTIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILID 391



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 15/169 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A++ F ++   G+EPD+ +Y+ ++       R+ EA  LF  +TC    P+ +T+ 
Sbjct: 156 RLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTC---SPDIMTYN 212

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L+D +CK G+  +A  +  ++L+ G + NV TYS +I+ Y K   ++ A++V+ +M E+
Sbjct: 213 VLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIES 272

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N  PN             AG   +A++L+  M + G     +  +TL D
Sbjct: 273 NCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLID 321



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCS-LNRLDEAVQLFEKLTCVQLKPNSITFT 66
           L+ A+KLF ++   G +  I+TYNT+I   C     +  AV LF KL    L P  +T+ 
Sbjct: 294 LEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYN 353

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  FC   R+ +A   F +M E     NV+TYS LIDG  K + MK A    E+M  +
Sbjct: 354 SLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAH 412

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +P +             G    A+  ++ M   G  P+ ++ +TL D
Sbjct: 413 GYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLID 461



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A K    +   G  P ++TY  +I G+C    L  A+  FEK+      PN
Sbjct: 393 LCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPN 452

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ F  LID  CK  R +D   +   M  +G K +V+TY+CLI G   +  ++ A  +++
Sbjct: 453 TVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFD 512

Query: 122 EM-CENNIS 129
            M C  N++
Sbjct: 513 GMACAPNVT 521



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 17/164 (10%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C LD    A ++F ++ +    P+ +T+NT+I G+C    L++A++LF ++  +  K   
Sbjct: 254 CKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATI 313

Query: 63  ITFTILIDAFCKE-GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +T+  LID+ CK+ G +  A  +F+K+   G    +VTY+ LI G+  ++ +  A   ++
Sbjct: 314 VTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFD 373

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           EM E   +PN+              R  EA +  + M  +G  P
Sbjct: 374 EM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTP 416



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 13/152 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A++ F ++  +   P++ITY+ +I G C + R+ EA +  E +      P  +T+ 
Sbjct: 364 RLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYG 422

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI+ FCK G +  A + F KM   G   N V ++ LIDG  K++       +   M   
Sbjct: 423 GLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAE 482

Query: 127 NISPNI------------AGRPTEAMQLYDSM 146
              P++            A R  +A +L+D M
Sbjct: 483 GCKPDVITYNCLISGLCSANRVEDAQRLFDGM 514



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 28/179 (15%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL+LF ++      P+  TYN +I G+C   ++ +AV +F  +    L PN+ T   L
Sbjct: 14  DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTL 73

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEM---- 123
           +   C+ G+M  A  +F +M + GP      +++ L+ G+F +  ++ A    ++M    
Sbjct: 74  LLGLCEIGQMSSALKLFREM-QAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSS 132

Query: 124 ---------------CENNISPNIAGRPTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
                          C  N S N   R  +AM+ +  M  +G+ PD     +LLS L+D
Sbjct: 133 SSVATGTYNLVLKGLCWENKSAN---RLEQAMEFFKEMKASGVEPDLESYHILLSALSD 188



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            L+L   +   G +PD+ITYN +I G CS NR+++A +LF+ + C    PN  TF  LI 
Sbjct: 472 GLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMACA---PNVTTFNFLIR 528

Query: 71  AFCKEGRMDDA 81
             C + ++++A
Sbjct: 529 GLCAQKKVEEA 539



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%)

Query: 31  NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
           N ++ G  S  + D+A++LF+++      PN+ T+ +LI  FCK G+M  A  +FS M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
            G   N  T + L+ G  +   M SA  ++ EM      P  A
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSA 103


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A +L  ++ ++G +P   TY  +I   C +   D+A+++ +++      PN  T+T
Sbjct: 257 RLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYT 316

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILID  C+EG++++A  +F KML+ G    ++T++ LI+GY K   + SAF +   M + 
Sbjct: 317 ILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKG 376

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N  PNI              +  +A  L   ++ NG++PD +  + L D
Sbjct: 377 NCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVD 425



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++ D GL PD +TYN ++ G+C   +L+ A  +F  +    L+P+  TFT LID
Sbjct: 401 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 460

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN---- 126
             CK GR++ A  +   M++KG   + VT++ LIDG+ K    K    ++E M EN    
Sbjct: 461 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 520

Query: 127 -----NISPNIAGRP---TEAMQLYDSMLRNGIMP 153
                N   +  G+     EA  +   M++ G++P
Sbjct: 521 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVP 555



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 12/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++ A  +F ++   GL P IIT+N +I GYC    +  A QL   +     KPN
Sbjct: 322 LCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPN 381

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L++  C+  +   A ++  ++++ G   + VTY+ L+DG+ K   +  AF+++ 
Sbjct: 382 IRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN 441

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M    + P+              GR  +A  +  SM++ GI  D +  + L D + +  
Sbjct: 442 SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIG 501

Query: 170 GSQEHC 175
            +++ C
Sbjct: 502 KAKDVC 507



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  + G++   GL P ++T+  +I G+C       ++++ E++      PN
Sbjct: 532 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 591

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I+  C  GR+++A  +   M   G   N  TY+ L+  + K+  +  AF +  
Sbjct: 592 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 651

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL----LSTLADYNLQSSGSQEH 174
            M +N   PN          +Y ++L   ++ +  +    LS+  D + +S  S+E+
Sbjct: 652 TMVKNGCQPN--------SHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 700



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  +F  +   GLEPD  T+  +I G C L RL++A  +   +    +  + +
Sbjct: 429 KEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEV 488

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LID  CK G+  D   +F  M+E        T++C +D   K   +  A  +  +M
Sbjct: 489 TFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKM 548

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  + P++            AG    ++++ + M + G  P+
Sbjct: 549 MKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 591



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 1   MLIKECH--LDAALKLFGQL---TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           +LI+EC    +  +KL G L   T+ G       Y+T++     LN    A  ++ ++  
Sbjct: 105 LLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVN 164

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
                  I +  +++A CK G +  A M   K+L  G   +    + L+    +  ++  
Sbjct: 165 EGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGE 224

Query: 116 AFDVYEEMC-ENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           AF V+E+M  E N  PN             AGR  EA QL   M+  G  P
Sbjct: 225 AFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQP 275


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KL  ++ ++G +PD++TYN +I G C   RLDEA++    +     +PN I
Sbjct: 206 KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI 265

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  I++ + C  GR  DA  + S ML KG   +VVT++ LI+   +   +  A D+ E+M
Sbjct: 266 THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM 325

Query: 124 CENNISPN-IAGRP-----------TEAMQLYDSMLRNGIMPDGLLLSTL 161
             +  +PN ++  P             A++  D M+  G  PD +  +TL
Sbjct: 326 PMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 375



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL++  ++    + PD++TYNTI+   C   +L +A+++ ++    +  P+ I
Sbjct: 139 KSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVI 195

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI+A CKE  +  A  +  +M  KG K +VVTY+ LI+G  K   +  A      M
Sbjct: 196 TYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 255

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN+             GR  +A +L   MLR G  P  +  + L ++
Sbjct: 256 PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 308



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+++  QL+ +G  P +ITYNT+I G   + + + A++L +++    LKP+
Sbjct: 379 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD 438

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+    +EG++D+A   F  +   G + N +TY+ ++ G  KS+    A D   
Sbjct: 439 IITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLA 498

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL------LLSTLADYNLQSSGSQEH 174
            M           +PTEA     ++L  GI  +GL      LL+ L    L    S E 
Sbjct: 499 YMISKRC------KPTEATY---TILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQ 548



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A++    +  RG  PDI+TYNT++   C   ++D AV++  +L+     P  I
Sbjct: 346 KEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLI 405

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +ID   K G+ + A  +  +M  KG K +++TYS L+ G  +   +  A   + ++
Sbjct: 406 TYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL 465

Query: 124 CENNISPN 131
               I PN
Sbjct: 466 EGLGIRPN 473



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 48/220 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--------------------- 42
           KE  LD A+K    +   G +P++IT+N I+   CS  R                     
Sbjct: 241 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVV 300

Query: 43  --------------LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                         L  A+ + EK+      PNS+++  L+  FCKE +MD A      M
Sbjct: 301 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 360

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           + +G   ++VTY+ L+    K   +  A ++  ++     SP +             G+ 
Sbjct: 361 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 420

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
             A++L D M R G+ PD +  S+L    L   G  +  I
Sbjct: 421 ERAIKLLDEMRRKGLKPDIITYSSLVS-GLSREGKVDEAI 459



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A+ +  ++   G  P+ ++YN ++ G+C   ++D A++  + +      P+
Sbjct: 309 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 368

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+ A CK+G++D A  + +++  KG    ++TY+ +IDG  K    + A  + +
Sbjct: 369 IVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLD 428

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P+I             G+  EA++ +  +   GI P+ +  +++
Sbjct: 429 EMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSI 480



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 15/165 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L+   K    +  RG  PDII   ++I G+C + +  +A  + E L      P+
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ +LI  +CK G +D+A  +  +M       +VVTY+ ++     S  +K A +V +
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
              +    P++                 +AM+L D M   G  PD
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 228



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           L++  +  E +      P+ I  T LI  FC+ G+   AT +   + + G   +V+TY+ 
Sbjct: 73  LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 132

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           LI GY KS  + +A  V + M   N++P++            +G+  +AM++ D  L+  
Sbjct: 133 LISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE 189

Query: 151 IMPDGLLLSTLADYNLQSSG 170
             PD +  + L +   + SG
Sbjct: 190 CYPDVITYTILIEATCKESG 209


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +  ++   GL PD+ TYN +I GYC      +A+++FE+++   ++  ++T+T LI 
Sbjct: 273 AYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIY 332

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AF ++G++ +   +F   ++KG + +VV Y+ LI+ +    +M+ AF++  EM +  I P
Sbjct: 333 AFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPP 392

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPD 154
           +            + GR  EA  L D M + GI PD
Sbjct: 393 DDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPD 428



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 18/158 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPNSITFTILI 69
           AL+L  Q+      P+ +TYNT+I G+C+  R+  A+++  ++     + P+  T+  LI
Sbjct: 135 ALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLI 190

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             +CK GRM+DA  +F +ML +G  A + V Y+ LI GY     +  A    E+M +  +
Sbjct: 191 SGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGV 250

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +  +A            GR ++A  + + M RNG+ PD
Sbjct: 251 AMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPD 288



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            ++ A K+F ++  +G + P  + YN +I GYC   +LD A+Q  E +    +     T+
Sbjct: 198 RMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATY 257

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            +L+ A   +GR  DA  +  +M   G   +V TY+ LI+GY K  N K A +V+EEM  
Sbjct: 258 NLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSR 317

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +                 G+  E  +L+   ++ GI PD ++ + L
Sbjct: 318 KGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNAL 365



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 8/112 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++  ++  + + PD +TYNT+I G+C L RLDEA  L +++T   ++P+      
Sbjct: 375 MERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDL----- 429

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
                CK G+ DDA  +  +M+ KG   +  TY  LI+G        SA D 
Sbjct: 430 ---GLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGLTTVDEQMSAADA 478


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A +L  ++ ++G +P   TY  +I   C +   D+A+++ +++      PN  T+T
Sbjct: 214 RLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYT 273

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILID  C+EG++++A  +F KML+ G    ++T++ LI+GY K   + SAF +   M + 
Sbjct: 274 ILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKG 333

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N  PNI              +  +A  L   ++ NG++PD +  + L D
Sbjct: 334 NCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVD 382



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++ D GL PD +TYN ++ G+C   +L+ A  +F  +    L+P+  TFT LID
Sbjct: 358 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 417

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN---- 126
             CK GR++ A  +   M++KG   + VT++ LIDG+ K    K    ++E M EN    
Sbjct: 418 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 477

Query: 127 -----NISPNIAGRP---TEAMQLYDSMLRNGIMP 153
                N   +  G+     EA  +   M++ G++P
Sbjct: 478 TAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVP 512



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 12/186 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++ A  +F ++   GL P IIT+N +I GYC    +  A QL   +     KPN
Sbjct: 279 LCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPN 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L++  C+  +   A ++  ++++ G   + VTY+ L+DG+ K   +  AF+++ 
Sbjct: 339 IRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN 398

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M    + P+              GR  +A  +  SM++ GI  D +  + L D + +  
Sbjct: 399 SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIG 458

Query: 170 GSQEHC 175
            +++ C
Sbjct: 459 KAKDVC 464



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  + G++   GL P ++T+  +I G+C       ++++ E++      PN
Sbjct: 489 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 548

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I+  C  GR+++A  +   M   G   N  TY+ L+  + K+  +  AF +  
Sbjct: 549 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 608

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL----LSTLADYNLQSSGSQEH 174
            M +N   PN          +Y ++L   ++ +  +    LS+  D + +S  S+E+
Sbjct: 609 TMVKNGCQPN--------SHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 657



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  +F  +   GLEPD  T+  +I G C L RL++A  +   +    +  + +
Sbjct: 386 KEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEV 445

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LID  CK G+  D   +F  M+E        T++C +D   K   +  A  +  +M
Sbjct: 446 TFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKM 505

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  + P++            AG    ++++ + M + G  P+
Sbjct: 506 MKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 548



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 1   MLIKECH--LDAALKLFGQL---TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           +LI+EC    +  +KL G L   T+ G       Y+T++     LN    A  ++ ++  
Sbjct: 62  LLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVN 121

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
                  I +  +++A CK G +  A M   K+L  G   +    + L+    +  ++  
Sbjct: 122 EGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGE 181

Query: 116 AFDVYEEMC-ENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           AF V+E+M  E +  PN             AGR  EA QL   M+  G  P
Sbjct: 182 AFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQP 232


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KL  ++ ++G +PD++TYN +I G C   RLDEA++    +     +PN I
Sbjct: 263 KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI 322

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  I++ + C  GR  DA  + S ML KG   +VVT++ LI+   +   +  A D+ E+M
Sbjct: 323 THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM 382

Query: 124 CENNISPN-IAGRP-----------TEAMQLYDSMLRNGIMPDGLLLSTL 161
             +  +PN ++  P             A++  D M+  G  PD +  +TL
Sbjct: 383 PMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 432



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL++  ++    + PD++TYNTI+   C   +L +A+++ ++    +  P+ I
Sbjct: 196 KSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVI 252

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI+A CKE  +  A  +  +M  KG K +VVTY+ LI+G  K   +  A      M
Sbjct: 253 TYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 312

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN+             GR  +A +L   MLR G  P  +  + L ++
Sbjct: 313 PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINF 365



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+++  QL+ +G  P +ITYNT+I G   + + + A++L +++    LKP+
Sbjct: 436 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD 495

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+    +EG++D+A   F  +   G + N +TY+ ++ G  KS+    A D   
Sbjct: 496 IITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLA 555

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL------LLSTLADYNLQSSGSQEH 174
            M           +PTEA     ++L  GI  +GL      LL+ L    L    S E 
Sbjct: 556 YMISKRC------KPTEATY---TILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQ 605



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A++    +  RG  PDI+TYNT++   C   ++D AV++  +L+     P  I
Sbjct: 403 KEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLI 462

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +ID   K G+ + A  +  +M  KG K +++TYS L+ G  +   +  A   + ++
Sbjct: 463 TYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL 522

Query: 124 CENNISPN 131
               I PN
Sbjct: 523 EGLGIRPN 530



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 47/206 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--------------------- 42
           KE  LD A+K    +   G +P++IT+N I+   CS  R                     
Sbjct: 298 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVV 357

Query: 43  --------------LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                         L  A+ + EK+      PNS+++  L+  FCKE +MD A      M
Sbjct: 358 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 417

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           + +G   ++VTY+ L+    K   +  A ++  ++     SP +             G+ 
Sbjct: 418 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 477

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLA 162
             A++L D M R G+ PD +  S+L 
Sbjct: 478 ERAIKLLDEMRRKGLKPDIITYSSLV 503



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A+ +  ++   G  P+ ++YN ++ G+C   ++D A++  + +      P+
Sbjct: 366 LCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 425

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+ A CK+G++D A  + +++  KG    ++TY+ +IDG  K    + A  + +
Sbjct: 426 IVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLD 485

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + P+I             G+  EA++ +  +   GI P+ +  +++
Sbjct: 486 EMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSI 537



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 15/165 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L+   K    +  RG  PDII   ++I G+C + +  +A  + E L      P+
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ +LI  +CK G +D+A  +  +M       +VVTY+ ++     S  +K A +V +
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
              +    P++                 +AM+L D M   G  PD
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 285



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           L++  +  E +      P+ I  T LI  FC+ G+   AT +   + + G   +V+TY+ 
Sbjct: 130 LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 189

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           LI GY KS  + +A  V + M   N++P++            +G+  +AM++ D  L+  
Sbjct: 190 LISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE 246

Query: 151 IMPDGLLLSTLADYNLQSSG 170
             PD +  + L +   + SG
Sbjct: 247 CYPDVITYTILIEATCKESG 266


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 13/176 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF ++  +G+ PDI TYN++I   C+L        L  ++   ++ P+
Sbjct: 178 LCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPD 237

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVY 120
            ++F  ++DA CKEG++ +A  +  KM+++G    NV++Y+ LI+GY K Q +  A  ++
Sbjct: 238 VVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLF 297

Query: 121 EEMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            EMC   + P+       I G     R  +A+ L+  M+    +P+ +    L DY
Sbjct: 298 GEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDY 353



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 18/176 (10%)

Query: 6   CHLDA-----ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           CHL+      AL LF ++   G  PD++TY T+I G C +     A++L   +     +P
Sbjct: 107 CHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQP 166

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N   +  +ID+ CK+ ++ +A  +FS+M+ KG   ++ TY+ LI         K    + 
Sbjct: 167 NVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLL 226

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSML-RNGIMPDGLLLSTLAD 163
            EM ++ I P++             G+ TEA  + D M+ R G MP+ +  +TL +
Sbjct: 227 NEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLIN 282



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 14/171 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--LDEAVQLFEKLTCVQLKPNSIT 64
           H    L L  Q+   G+ P+I T + +I  +C LNR  + EA+ LF+K+     +P+ +T
Sbjct: 76  HHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVT 135

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI+  CK G    A  +   M++K  + NV  Y+ +ID   K + +  AF+++ EM 
Sbjct: 136 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMV 195

Query: 125 ENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
              ISP+I    +                L + M+ + IMPD +  +T+ D
Sbjct: 196 TKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 246



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L KE  +  A  +  ++  RG   P++I+YNT+I GYC + R+D+A+ LF ++   +L P
Sbjct: 248 LCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIP 307

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +++T++ LI   C   R+ DA  +F +M+      N+VTY  L+D   K++ +  A  + 
Sbjct: 308 DTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALL 367

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + +  +N+ P+I            AG    A  L+ ++   G+ PD
Sbjct: 368 KAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 413



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LFG++  + L PD +TY+T+I G C + RL +A+ LF ++      PN +T+ I
Sbjct: 290 IDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRI 349

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+D  CK   + +A  +   +       ++   +  IDG  ++  +++A D++  +    
Sbjct: 350 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 409

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + P++             G   EA +L+  M  NG   +G + +T+ 
Sbjct: 410 LQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTIT 456



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 14/161 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+  F ++      P  + +N ++     +      + L  ++    + PN  T  I
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 68  LIDAFCK--EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           LI++FC    G++ +A  +F KM+ +G + +VVTY  LI+G  K  N  +A  +   M +
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQ 161

Query: 126 NNISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
            N  PN+              + TEA  L+  M+  GI PD
Sbjct: 162 KNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPD 202



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L  A+ L   +    L+PDI   N  I G C    L+ A  LF  L+   L+P+
Sbjct: 354 LCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 413

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I+I+  C+ G +D+A+ +F +M E G   N   Y+ +  G+ ++     A  + +
Sbjct: 414 VWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQ 473

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL---LLSTLADYNLQSSGSQEH 174
           EM     S +        M L+  ML +    DGL   L   L D+  Q S   E+
Sbjct: 474 EMVARGFSAD-----ASTMTLFVKMLSD----DGLDQSLKQILRDFCKQKSWIYEN 520


>gi|449449098|ref|XP_004142302.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01740-like [Cucumis sativus]
 gi|449521427|ref|XP_004167731.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01740-like [Cucumis sativus]
          Length = 585

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++F  +   G+ P+++ ++++I GYC    LD A + FE++    ++PN  T++ LID  
Sbjct: 182 RMFLDMMKVGIVPNLVVFSSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDGC 241

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G +  A  +F KML      N   Y+ +IDG+FK  N+  A     +M + +I  ++
Sbjct: 242 SKHGMLARADSLFEKMLSASILPNCTVYTSIIDGHFKKGNVDDAIKYINQMFDRDIKLDL 301

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                        GR  ++M+  + + +NG++PD ++L+ + D + ++   +E
Sbjct: 302 TAYTVIISGFHRVGRFDKSMEAAEYVAKNGLLPDRIILTAIMDVHFKAGNIKE 354



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 18/182 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K  ++  AL  +  L  +G E D++T + ++ G      L EA     +   V+   N 
Sbjct: 347 FKAGNIKEALNAYKILLAKGFEADVVTLSALMDGLSKHGYLQEA-----RRYLVKENANE 401

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I +T+ IDA CKEG +DDA  M  +M E G   +   Y+  I    K  N+  AF V + 
Sbjct: 402 ILYTVFIDALCKEGNLDDAEKMIKEMSEAGFVPDKFVYTSWIAELCKQGNLLKAFMVKKR 461

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL-ADYNLQSS 169
           M + ++ P++             G   EA Q++D ML  GI PD +    L   Y+ Q +
Sbjct: 462 MVQEHVEPDLLTYSSLIGGLAEKGLMIEAKQVFDDMLNKGITPDFVSYDILIRGYHNQGN 521

Query: 170 GS 171
           G+
Sbjct: 522 GA 523



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A + F ++ +  + P+  TY+T+I G      L  A  LFEK+    + PN  
Sbjct: 208 KAGSLDVAFEYFERMKECSVRPNEFTYSTLIDGCSKHGMLARADSLFEKMLSASILPNCT 267

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +ID   K+G +DDA    ++M ++  K ++  Y+ +I G+ +      + +  E +
Sbjct: 268 VYTSIIDGHFKKGNVDDAIKYINQMFDRDIKLDLTAYTVIISGFHRVGRFDKSMEAAEYV 327

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +N + P+             AG   EA+  Y  +L  G   D + LS L D
Sbjct: 328 AKNGLLPDRIILTAIMDVHFKAGNIKEALNAYKILLAKGFEADVVTLSALMD 379



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K+ ++D A+K   Q+ DR ++ D+  Y  II G+  + R D++++  E +    L P+ 
Sbjct: 277 FKKGNVDDAIKYINQMFDRDIKLDLTAYTVIISGFHRVGRFDKSMEAAEYVAKNGLLPDR 336

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I  T ++D   K G + +A   +  +L KG +A+VVT S L+DG  K   ++ A     +
Sbjct: 337 IILTAIMDVHFKAGNIKEALNAYKILLAKGFEADVVTLSALMDGLSKHGYLQEARRYLVK 396

Query: 123 MCENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLST 160
              N I   +        G   +A ++   M   G +PD  + ++
Sbjct: 397 ENANEILYTVFIDALCKEGNLDDAEKMIKEMSEAGFVPDKFVYTS 441



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE +LD A K+  ++++ G  PD   Y + I   C    L +A  + +++    ++P+
Sbjct: 411 LCKEGNLDDAEKMIKEMSEAGFVPDKFVYTSWIAELCKQGNLLKAFMVKKRMVQEHVEPD 470

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LI    ++G M +A  +F  ML KG   + V+Y  LI GY    N  +  D   
Sbjct: 471 LLTYSSLIGGLAEKGLMIEAKQVFDDMLNKGITPDFVSYDILIRGYHNQGNGAAISDFVL 530

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
            +     S NI  R  + M L++      I PDGLL
Sbjct: 531 IILS---SCNI--RSAKWMALFE------IPPDGLL 555



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL A  KL      +G  P   ++N+II  +C    +  A  +F  ++     P+ +++ 
Sbjct: 38  HLSA--KLLFHFLSKGYTPHPSSFNSIISFFCRSGNVKFAEHIFISMSRFGCSPDIVSYN 95

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKAN---VVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            L+D +C   ++  A  + +++  +G + N   +V ++ L +G+ K      AF  +  M
Sbjct: 96  SLLDGYCSSYQIQKACFLVNRV--RGCELNRPDLVMFNILFNGFAKVYMKNEAFMYFGLM 153

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  + P+I             G      +++  M++ GI+P+ ++ S+L D
Sbjct: 154 WKYCL-PSIVTYGTFVDMFCKMGDMKMGNRMFLDMMKVGIVPNLVVFSSLID 204


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 79/132 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  + AA +L  +++++GLE +  TYN++I G C    L++A++    +    LKP+
Sbjct: 476 LCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPD 535

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LIDA CK G +D A  +  +ML+KG K  +VTY+ L++G+  S  ++    + +
Sbjct: 536 VYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLD 595

Query: 122 EMCENNISPNIA 133
            M E NI PN A
Sbjct: 596 WMLEKNIHPNAA 607



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +A + F ++  +GL  D +TY T+I G C    L+EA +L +++   +L  + +T+T+
Sbjct: 377 LVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTV 436

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK G+M +A  M + M+++G   NVVTY+ L DG  K  ++++A ++  EM    
Sbjct: 437 LIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKG 496

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  N             AG   +AM+    M    + PD    +TL D
Sbjct: 497 LELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLID 544



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A++    +    L+PD+ TY T+I   C    LD A  L +++    +KP 
Sbjct: 511 LCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPT 570

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +L++ FC  GR++    +   MLEK    N  TY+ L+  Y    NMKS  ++Y+
Sbjct: 571 IVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYK 630

Query: 122 EMCENNISPN-------IAGR-----PTEAMQLYDSMLRNGI 151
            M   ++ PN       I G        EA+  +D M++ G 
Sbjct: 631 GMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGF 672



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L+ A KL  ++  R L+ D +TY  +I GYC   ++ EA Q+   +    + PN
Sbjct: 406 LCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPN 465

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L D  CK+G +  A  +  +M  KG + N  TY+ LI+G  K+  ++ A     
Sbjct: 466 VVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMA 525

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M    + P++            +G    A  L   ML  GI P      T+  YN+  +
Sbjct: 526 DMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKP------TIVTYNVLMN 579

Query: 170 G 170
           G
Sbjct: 580 G 580



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++   +  R +  D   Y T++ G+C+   L  A + F+++    L  + +T+T +I+
Sbjct: 345 ALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMIN 404

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+   +++A  +  +M  +    + VTY+ LIDGY K   M  AF ++  M +  ++P
Sbjct: 405 GLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTP 464

Query: 131 NI 132
           N+
Sbjct: 465 NV 466



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+KL  ++   G+EP+   Y +++   C    + +A+++ E +   ++  +   +T 
Sbjct: 307 LENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTT 366

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++  FC +G +  A   F +M  KG   + VTY+ +I+G  ++  ++ A  + +EM    
Sbjct: 367 VLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARR 426

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  +              G+  EA Q++++M++ G+ P+ +  + L D
Sbjct: 427 LDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTD 474



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 61/122 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   KL   + ++ + P+  TYN+++  YC  N +    ++++ +    + PN  T+ I
Sbjct: 587 VEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNI 646

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK   M +A     +M++KG +    +YS LI    K +    A +++ +M +  
Sbjct: 647 LIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEG 706

Query: 128 IS 129
           ++
Sbjct: 707 LT 708



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 23/160 (14%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  +L   G+ P     N ++    S   LDEA++LF++L       N  ++ IL+ A C
Sbjct: 219 LLRRLRQYGISPSPEACNAVL----SRLPLDEAIELFQELP----HKNVCSYNILLKALC 270

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
             GR+ DA  +F +M       +VVTY  LI G+     +++A  + +EM    + PN  
Sbjct: 271 DAGRVKDARQLFDEM---ASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNAT 327

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G  ++A+++ + M++  ++ D  L +T+
Sbjct: 328 VYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTV 367



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 61/124 (49%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E ++ +  +++  +  R + P+  TYN +I G+C    + EA+   +++     +  + +
Sbjct: 619 ENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATS 678

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ LI    K+ +  +A  +F  M ++G  A    Y   ID  F   N++S   + +E+ 
Sbjct: 679 YSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELV 738

Query: 125 ENNI 128
           E +I
Sbjct: 739 EASI 742


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K   ++AA K+   + + GL P+++T N +I   C   +LDEA  +FE +      P
Sbjct: 416 MLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSP 475

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +TF  LID   K+GR+DDA  ++ +ML+     N V Y+ LI  +FK    +    ++
Sbjct: 476 DEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIF 535

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM     SP++            AG   +   L++ +   G +PD +  S L
Sbjct: 536 KEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSIL 588



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L  ++  +G +P ++TY ++I G   ++RLDEA  LFE+     L+ N +
Sbjct: 629 KSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVV 688

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K GR+D+A ++  ++++KG   NV T++CL+D   K++ +  A   ++ M
Sbjct: 689 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNM 748

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                +PN       I G     +  +A   +  M + G+ P+ +  +T+
Sbjct: 749 KNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTM 798



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K        +LF  + ++G   D   YNT I G+C   ++++A QL E++     +P 
Sbjct: 592 LVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPT 651

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID   K  R+D+A M+F +    G + NVV YS LIDG+ K   +  A+ + E
Sbjct: 652 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIME 711

Query: 122 EMCENNISPNI 132
           E+ +  ++PN+
Sbjct: 712 ELMQKGLTPNV 722



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A K F ++   GL PD +TY ++I   C  NRLDEAV++FE++   +  P + 
Sbjct: 280 KAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAY 339

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  +I  +   G+ D+A  +  +   +G   +V+ Y+C++    K   +  A   +EEM
Sbjct: 340 AYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM 399

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            + + +PN+            AG    A ++ D+M   G+ P+ + ++ + D   ++   
Sbjct: 400 -KKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKL 458

Query: 172 QEHC 175
            E C
Sbjct: 459 DEAC 462



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  AL+ F ++  +   P++ TYN +I   C    ++ A ++ + +    L PN
Sbjct: 383 LGKKGRLGEALRTFEEMK-KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPN 441

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T  I+ID  CK  ++D+A  +F  M  K    + VT+  LIDG  K   +  A+ +YE
Sbjct: 442 VMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYE 501

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +++  PN              GR  +  +++  M+  G  PD  LL+   D
Sbjct: 502 QMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMD 555



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 70/127 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  +  +L  +GL P++ T+N ++        ++EA+  F+ +  ++  PN IT++
Sbjct: 702 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYS 761

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+  C+  + + A + + +M ++G K N +TY+ +I G  K+ N+  A  ++E    N
Sbjct: 762 ILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKAN 821

Query: 127 NISPNIA 133
              P+ A
Sbjct: 822 GGVPDSA 828



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   LD A+++F Q+      P    YNT+I GY S  + DEA  L E+       P
Sbjct: 312 VLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIP 371

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + I +  ++    K+GR+ +A   F +M +K    N+ TY+ LID   K+  +++AF V 
Sbjct: 372 SVIAYNCILTCLGKKGRLGEALRTFEEM-KKDAAPNLSTYNVLIDMLCKAGEVEAAFKVR 430

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + M E  + PN+            A +  EA  +++ M      PD +   +L D
Sbjct: 431 DAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLID 485



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 66/121 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ AL  F  + +    P+ ITY+ +I G C + + ++A   ++++    LKPN
Sbjct: 732 LVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPN 791

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T +I    K G + +A+ +F +    G   +  +Y+ +I+G   S+    A+ ++E
Sbjct: 792 TITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFE 851

Query: 122 E 122
           E
Sbjct: 852 E 852



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +  +E  LDAAL L  ++    L  DI+ YN  I  +    ++D A + F ++    L P
Sbjct: 242 VFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLP 301

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T +I   CK  R+D+A  +F +M +         Y+ +I GY  +     A+ + 
Sbjct: 302 DDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLL 361

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           E        P++             GR  EA++ ++ M ++ 
Sbjct: 362 ERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA 403



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L LF Q+ + G E  +  + T+I  +    RLD A+ L +++    L  + + + + 
Sbjct: 215 DIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVC 274

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K G++D A   F ++   G   + VTY+ +I    K   +  A +++E+M +N  
Sbjct: 275 IDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRN 334

Query: 129 SP------------NIAGRPTEAMQLYDSMLRNGIMP 153
            P              AG+  EA  L +     G +P
Sbjct: 335 VPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIP 371



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+F ++  RG  PD+   N  +          +   LFE++      P+ ++++ILI   
Sbjct: 533 KIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGL 592

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G   +   +F  M E+G   +   Y+  IDG+ KS  +  A+ + EEM      P +
Sbjct: 593 VKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTV 652

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         R  EA  L++    NG+  + ++ S+L D
Sbjct: 653 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLID 695



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 12/163 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   L     L   +      P    Y T+I    S+   D  + LF ++  +  + + 
Sbjct: 174 IKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSV 233

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             FT +I  F +EGR+D A  +  +M      A++V Y+  ID + K+  +  A+  + E
Sbjct: 234 HLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHE 293

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           +  + + P+               R  EA+++++ M +N  +P
Sbjct: 294 IKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVP 336



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 51/109 (46%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A   + ++  +GL+P+ ITY T+I G      + EA  LFE+       P+S ++  
Sbjct: 773 FNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNA 832

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           +I+      R  +A  +F +   KG   +  T   L+D   K + ++ A
Sbjct: 833 IIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECLEQA 881


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 50/206 (24%)

Query: 6   CHLDAALKLFG---QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C   A  + FG    + D GL PD  TY  +I G C   R +EA  L ++++C +LKPN 
Sbjct: 268 CRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNV 327

Query: 63  ITFTILIDAF-----------------------------------CKEGRMDDATMMFSK 87
           + +  LID F                                   CK G+MD A+++  +
Sbjct: 328 VVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQ 387

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M+    + + +TY+ +I+G+F+  + K AF +  EM    ISPN+            +G 
Sbjct: 388 MVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGE 447

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTL 161
           P +A  L + M   G+ P+  + + L
Sbjct: 448 PEKASDLLEEMTTKGLKPNAFVYAPL 473



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 13/177 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  L  ++T +GL+P+   Y  +I GYC    +  A ++F+K+T V + P+   +  L
Sbjct: 449 EKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSL 508

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    K GR++++T  F++M E+G   N  TYS LI GY K+ +++SA  + + M +  +
Sbjct: 509 IFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL 568

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN             +    +    + SML  G+M D  +   L  +NL SSG+ E
Sbjct: 569 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI-HNLSSSGNME 624



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  L  Q+      PD ITYN II G+   +   +A +L  ++    + PN
Sbjct: 372 LCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN 431

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I+I   C+ G  + A+ +  +M  KG K N   Y+ LI GY +  N+  A ++++
Sbjct: 432 VYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD 491

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD-----GLLLSTLADY 164
           +M + N+ P++             GR  E+ + +  M   G++P+     GL+   L + 
Sbjct: 492 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNG 551

Query: 165 NLQSS 169
           +L+S+
Sbjct: 552 DLESA 556



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++AA ++   +   G  PD+  Y+++I G C     ++A  + ++++   + PN + + 
Sbjct: 622 NMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYN 681

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK G +  A  +F+ +L KG   N VTY+ LIDG  K  ++ +AF +Y EM   
Sbjct: 682 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 741

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNG 150
            I+P+             AG   +AM L + M   G
Sbjct: 742 GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG 777



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++  A ++F ++T   + PD+  YN++I G   + R++E+ + F ++    L PN  
Sbjct: 479 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 538

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI  + K G ++ A  +  +ML+ G K N V Y  L++ YFKS +++     ++ M
Sbjct: 539 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 598

Query: 124 CENNI------------SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +            + + +G    A ++   + +NG +PD  + S+L
Sbjct: 599 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSL 648



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 11/171 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  +  +++ +G++P+I+ YN +I G C    +  A  +F  +    L PN
Sbjct: 652 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 711

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LID  CK G + +A  ++++ML  G   +   YS L  G   + +++ A  + E
Sbjct: 712 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 771

Query: 122 EM---------CENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM           NN+       G+  E ++L   ++  G++P+ L +  +
Sbjct: 772 EMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENI 822



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ + K F Q+ +RGL P+  TY+ +I GY     L+ A QL +++    LKPN
Sbjct: 512 LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 571

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK------------------------------ 91
            + +  L++++ K   ++  +  F  ML++                              
Sbjct: 572 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 631

Query: 92  -----GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
                G   +V  YS LI G  K+ + + AF + +EM +  + PNI            +G
Sbjct: 632 GIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 691

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + A  +++S+L  G++P+ +  ++L D
Sbjct: 692 DISYARNVFNSILAKGLVPNCVTYTSLID 720



 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 12/159 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  + D+G+  D   Y  +I    S   ++ A ++   +      P+   ++ LI   CK
Sbjct: 595 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 654

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
               + A  +  +M +KG   N+V Y+ LIDG  KS ++  A +V+  +    + PN   
Sbjct: 655 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 714

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      G  + A  LY+ ML  GI PD  + S L
Sbjct: 715 YTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 753



 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +   LKL   +  RGL P+ +T   II G     +L E   +F +L     +  + 
Sbjct: 793 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 852

Query: 64  TFTIL------------------IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            F+ L                  I   CKEG +D A M+   ++ K       +Y  ++D
Sbjct: 853 HFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVD 912

Query: 106 GYFKSQNMKSAFDVYEEM-CENNISPNI 132
              +   +  A ++ +EM    N+ P +
Sbjct: 913 NLCRKGKLSEALNLLKEMDKRGNLQPTL 940



 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++A+CK    D A  +  +M E+G   N VTY+ LI G  +S  ++ AF   ++M +  +
Sbjct: 229 LEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 288

Query: 129 SPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            P+       I G     R  EA  L D M    + P+ ++ + L D  ++   + E
Sbjct: 289 VPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADE 345



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ L  ++  RG    I ++N ++ G+C   ++ E ++L   +    L PN++T   
Sbjct: 763 LEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIEN 821

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
           +I    + G++ +   +F ++ +K  ++    +S L
Sbjct: 822 IISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL 857


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A +L  ++ ++G +P   TY  +I   C +   D+A+++ +++      PN  T+T
Sbjct: 280 RLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYT 339

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILID  C+EG++++A  +F KML+ G    ++T++ LI+GY K   + SAF +   M + 
Sbjct: 340 ILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKG 399

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N  PNI              +  +A  L   ++ NG++PD +  + L D
Sbjct: 400 NCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVD 448



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 66/116 (56%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L  ++ D GL PD +TYN ++ G+C   +L+ A  +F  +    L+P+  TFT LID
Sbjct: 424 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 483

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             CK GR++ A  +   M++KG   + VT++ LIDG+ K    K    ++E M EN
Sbjct: 484 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVEN 539



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  ++ A  +F ++   GL P IIT+N +I GYC    +  A QL   +     KPN
Sbjct: 345 LCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPN 404

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L++  C+  +   A ++  ++++ G   + VTY+ L+DG+ K   +  AF+++ 
Sbjct: 405 IRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN 464

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M    + P+              GR  +A  +  SM++ GI  D +  + L D + +  
Sbjct: 465 SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIG 524

Query: 170 GSQEHCI 176
            +++ C 
Sbjct: 525 KAKDVCF 531



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  + G++   GL P ++T+  +I G+C       ++++ E++      PN
Sbjct: 555 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 614

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TI+I+  C  GR+++A  +   M   G   N  TY+ L+  + K+  +  AF +  
Sbjct: 615 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 674

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL----LSTLADYNLQSSGSQEH 174
            M +N   PN          +Y ++L   ++ +  +    LS+  D + +S  S+E+
Sbjct: 675 TMVKNGCQPN--------SHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 723



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  +F  +   GLEPD  T+  +I G C L RL++A  +   +    +  + +
Sbjct: 452 KEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEV 511

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LID  CK G+  D   +F  M+E        T++C +D   K   +  A  +  +M
Sbjct: 512 TFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKM 571

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  + P++            AG    ++++ + M + G  P+
Sbjct: 572 MKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 614



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 1   MLIKECH--LDAALKLFGQL---TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           +LI+EC    +  +KL G L   T+ G       Y+T++     LN    A  ++ ++  
Sbjct: 128 LLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVN 187

Query: 56  VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
                  I +  +++A CK G +  A M   K+L  G   +    + L+    +  ++  
Sbjct: 188 EGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGE 247

Query: 116 AFDVYEEMC-ENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           AF V+E+M  E N  PN             AGR  EA QL   M+  G  P
Sbjct: 248 AFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQP 298


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 23/199 (11%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML +E  L+AAL++   +   GL P+++T N +I   C   +L+EA  +FE +      P
Sbjct: 413 MLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTP 472

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++TF+ LID   K GR+DDA  ++ KML+ G     + Y+ LI  +FK    +    +Y
Sbjct: 473 NAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIY 532

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD---------GLLLS 159
           +EM     SP++            AG   +   L+  +  +G +PD         GL+ +
Sbjct: 533 KEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKA 592

Query: 160 TLAD--YNLQSSGSQEHCI 176
            LA+  Y L  +  ++ C+
Sbjct: 593 GLANETYELFYAMKEQGCV 611



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D + K F ++   GL PD +TY ++I   C  NRLDEAV+LFE+L   +  P + 
Sbjct: 277 KAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAY 336

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  +I  +   G+ D+A  +  +   KG   +V+ Y+C++    K + ++ A  ++EEM
Sbjct: 337 AYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM 396

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
             + + PN+             G+   A+++ D M R G+ P+ L ++ + D   ++   
Sbjct: 397 KRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKL 455

Query: 172 QEHC 175
           +E C
Sbjct: 456 EEAC 459



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L  ++  +G  P ++TY ++I G   ++RLDEA  LFE+     +K N +
Sbjct: 626 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 685

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K GR+D+A ++  ++++KG   NV T++CL+D   K++ +  A   ++ M
Sbjct: 686 VYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSM 745

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +    PN       I G     +  +A   +  M + G+ P+ +  +T+
Sbjct: 746 KDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTM 795



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    +   +LF  + ++G   D   YN +I G+C   ++++A QL E++      P 
Sbjct: 589 LVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPT 648

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID   K  R+D+A M+F +    G K NVV YS LIDG+ K   +  A+ + E
Sbjct: 649 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIME 708

Query: 122 EMCENNISPNI 132
           E+ +  ++PN+
Sbjct: 709 ELMQKGLTPNV 719



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ AL++F ++  R   P++ TYN +I   C   +L+ A+++ + +    L PN
Sbjct: 380 LGKKRRVEEALRIFEEMK-RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPN 438

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T  I+ID  CK  ++++A  +F  M +K    N VT+S LIDG  K   +  A+ +YE
Sbjct: 439 VLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYE 498

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +    P               GR  +  ++Y  M+  G  PD  L++T  D
Sbjct: 499 KMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMD 552



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 46/207 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-------- 52
           +L K   LD A++LF QL      P    YNT+I GY S  + DEA  L E+        
Sbjct: 309 VLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 368

Query: 53  --------LTCVQLK------------------PNSITFTILIDAFCKEGRMDDATMMFS 86
                   LTC+  K                  PN  T+ ILID  C+EG+++ A  +  
Sbjct: 369 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRD 428

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
            M   G   NV+T + +ID   K+Q ++ A  ++E M +   +PN              G
Sbjct: 429 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 488

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           R  +A  LY+ ML  G +P  ++ ++L
Sbjct: 489 RVDDAYSLYEKMLDCGHVPGAIVYTSL 515



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 67/121 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ AL  F  + D    P+ ITY+ +I G C + + ++A   ++++  + LKPN
Sbjct: 729 LVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPN 788

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T +I    K G + +A+ +FS+    G   +  +Y+ +I+G   +     A+ ++E
Sbjct: 789 TITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFE 848

Query: 122 E 122
           E
Sbjct: 849 E 849



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L LF Q+ + G E ++  + T+I  +    R+D A+ L +++    L  + + + + 
Sbjct: 212 DPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVC 271

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K G++D +   F +M   G   + VTY+ +I    K+  +  A +++E++ +N  
Sbjct: 272 IDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRK 331

Query: 129 SP------------NIAGRPTEAMQLYDSMLRNGIMP 153
            P              AG+  EA  L +     G +P
Sbjct: 332 VPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 368



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++ ++   G  PD+   NT +         ++   LF ++      P++ +++ILI   
Sbjct: 530 KIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGL 589

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G  ++   +F  M E+G   +   Y+ +IDG+ KS  +  A+ + EEM      P +
Sbjct: 590 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTV 649

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         R  EA  L++    NGI  + ++ S+L D
Sbjct: 650 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLID 692



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 12/163 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   L  A  +   +      P    Y  +I     +   D  + LF ++  +  + N 
Sbjct: 171 VKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNV 230

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             FT LI  F +EGR+D A  +  +M      A++V Y+  ID + K+  +  ++  + E
Sbjct: 231 HLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHE 290

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           M  + + P+             A R  EA++L++ + +N  +P
Sbjct: 291 MKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVP 333



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A   + ++   GL+P+ ITY T+I G      + EA  LF +       P+S ++  
Sbjct: 770 FNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNA 829

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           +I+      +  DA  +F +   KG   +  T   L+D   K++ ++ A
Sbjct: 830 MIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 878


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  + + GL PD  +Y T++ GYC +  +  A++   K+    ++P+  T+T+LID
Sbjct: 342 AAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLID 401

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK G M+ A  +F +M+ +G   +VV+Y+ L++GY K  +++ AF++   M    +SP
Sbjct: 402 SCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSP 461

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPD 154
           ++             G   EA  + D + R G  PD
Sbjct: 462 DLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPD 497



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK   ++ A  +  +LT RG  PD++T+  II G+ +    +EA  LF  ++   L+P+
Sbjct: 473 LIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPD 532

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + L++ +C+   M +A ++F KML+ G KA+V+ Y+ LI G+    N+  A  +  
Sbjct: 533 VVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVS 592

Query: 122 EMCENNISPN 131
            M E+ I PN
Sbjct: 593 MMIEHGIMPN 602



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ HL  A +L   +   G+ PD++TYN +I G      ++EA  + ++LT     P+ +
Sbjct: 440 KKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVV 499

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT +I  F  +G  ++A ++F  M E   + +VVT S L++GY +++ M  A  ++ +M
Sbjct: 500 TFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKM 559

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
            +  +  ++             G   +A  L   M+ +GIMP+ +
Sbjct: 560 LDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNI 604



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 90/177 (50%), Gaps = 16/177 (9%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LI  C    +++ A  LF ++   GL PD+++YNT++ GY     L +A +L   +   
Sbjct: 398 LLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSA 457

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            + P+ +T+ ILI    K G +++A  +  ++  +G   +VVT++ +I G+    N + A
Sbjct: 458 GVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEA 517

Query: 117 FDVYEEMCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
           F ++  M E+++ P++                 EA  L+  ML  G+  D +L ++L
Sbjct: 518 FLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSL 574



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ALK  G++  RG+ P + TY  +I   C    ++ A  LF+++    L P+ +++  L++
Sbjct: 377 ALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMN 436

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K+G +  A  + S M   G   ++VTY+ LI G  K   +  A D+ +E+     SP
Sbjct: 437 GYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSP 496

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++             G   EA  L+  M  + + PD +  S L
Sbjct: 497 DVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSAL 539



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + + A  LF  +++  LEPD++T + ++ GYC    + EA  LF K+    LK + I + 
Sbjct: 513 NFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYN 572

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            LI  FC  G +DDA  + S M+E G   N +T+  L+ GY K
Sbjct: 573 SLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEK 615



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L+ A     ++  +GL  +    +  I GYCS   +D   +L  ++  + +KP+
Sbjct: 196 LLESEQLNLAWDFLKEMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPD 255

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +TI+ID+ CK   + +AT +  KM + G   + V+ S ++DGY K    + A DV E
Sbjct: 256 VVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLE 315

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                N+SPNI             G   +A +++  M   G++PD    +T+
Sbjct: 316 VF---NLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTM 364



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 18/160 (11%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L P+I  +N+ I   C+   + +A ++F+ +  + L P+  ++T ++  +CK   + +A 
Sbjct: 319 LSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNAL 378

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
               KML++G + +V TY+ LID   K  NM+ A  +++ M    + P++          
Sbjct: 379 KYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGY 438

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
              G   +A +L   M   G+ PD      L  YN+   G
Sbjct: 439 GKKGHLQKAFELLSMMRSAGVSPD------LVTYNILIHG 472



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 44/201 (21%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------------ 54
           ++D   KL  ++   G++PD++ Y  +I   C ++ L EA  +  K+T            
Sbjct: 236 NIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVS 295

Query: 55  --------------------CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94
                                  L PN   F   I   C +G M  A  +F  M E G  
Sbjct: 296 SVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLI 355

Query: 95  ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQL 142
            +  +Y+ ++ GY K +++ +A     +M +  I P++A            G    A  L
Sbjct: 356 PDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYL 415

Query: 143 YDSMLRNGIMPDGLLLSTLAD 163
           +  M+  G++PD +  +TL +
Sbjct: 416 FQRMITEGLVPDVVSYNTLMN 436



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF- 72
           LF ++ D GL+ D+I YN++I G+CSL  +D+A  L   +    + PN+IT   L+  + 
Sbjct: 555 LFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYE 614

Query: 73  --CKEGRMDDATMMFSKMLEK 91
             C E  ++ A     ++L K
Sbjct: 615 KKCVENPVERAAFKLQQLLLK 635



 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 56/123 (45%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE     ALKL  ++    + P I   N+++       +L+ A    +++    L  N+
Sbjct: 162 VKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNA 221

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
              ++ I  +C +G +D    +  +M   G K +VV Y+ +ID   K   +K A  +  +
Sbjct: 222 SIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFK 281

Query: 123 MCE 125
           M +
Sbjct: 282 MTQ 284


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 23/199 (11%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML +E  L+AAL++   +   GL P+++T N +I   C   +L+EA  +FE +      P
Sbjct: 168 MLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTP 227

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++TF+ LID   K GR+DDA  ++ KML+ G     + Y+ LI  +FK    +    +Y
Sbjct: 228 NAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIY 287

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD---------GLLLS 159
           +EM     SP++            AG   +   L+  +  +G +PD         GL+ +
Sbjct: 288 KEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKA 347

Query: 160 TLAD--YNLQSSGSQEHCI 176
            LA+  Y L  +  ++ C+
Sbjct: 348 GLANETYELFYAMKEQGCV 366



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L  ++  +G  P ++TY ++I G   ++RLDEA  LFE+     +K N +
Sbjct: 381 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 440

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K GR+D+A ++  ++++KG   NV T++CL+D   K++ +  A   ++ M
Sbjct: 441 VYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSM 500

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +    PN       I G     +  +A   +  M + G+ P+ +  +T+
Sbjct: 501 KDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTM 550



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    +   +LF  + ++G   D   YN +I G+C   ++++A QL E++      P 
Sbjct: 344 LVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPT 403

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID   K  R+D+A M+F +    G K NVV YS LIDG+ K   +  A+ + E
Sbjct: 404 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIME 463

Query: 122 EMCENNISPNI 132
           E+ +  ++PN+
Sbjct: 464 ELMQKGLTPNV 474



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ AL++F ++  R   P++ TYN +I   C   +L+ A+++ + +    L PN
Sbjct: 135 LGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPN 193

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T  I+ID  CK  ++++A  +F  M +K    N VT+S LIDG  K   +  A+ +YE
Sbjct: 194 VLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYE 253

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +    P               GR  +  ++Y  M+  G  PD  L++T  D
Sbjct: 254 KMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMD 307



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 46/207 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-------- 52
           +L K   LD A++LF QL      P    YNT+I GY S  + DEA  L E+        
Sbjct: 64  VLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 123

Query: 53  --------LTCVQLK------------------PNSITFTILIDAFCKEGRMDDATMMFS 86
                   LTC+  K                  PN  T+ ILID  C+EG+++ A  +  
Sbjct: 124 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRD 183

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
            M   G   NV+T + +ID   K+Q ++ A  ++E M +   +PN              G
Sbjct: 184 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 243

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           R  +A  LY+ ML  G +P  ++ ++L
Sbjct: 244 RVDDAYSLYEKMLDCGHVPGAIVYTSL 270



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
           C  NRLDEAV+LFE+L   +  P +  +  +I  +   G+ D+A  +  +   KG   +V
Sbjct: 66  CKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSV 125

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDS 145
           + Y+C++    K + ++ A  ++EEM  + + PN+             G+   A+++ D 
Sbjct: 126 IAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDD 184

Query: 146 MLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           M R G+ P+ L ++ + D   ++   +E C
Sbjct: 185 MERAGLFPNVLTVNIMIDRLCKAQKLEEAC 214



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 67/121 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ AL  F  + D    P+ ITY+ +I G C + + ++A   ++++  + LKPN
Sbjct: 484 LVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPN 543

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T +I    K G + +A+ +FS+    G   +  +Y+ +I+G   +     A+ ++E
Sbjct: 544 TITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFE 603

Query: 122 E 122
           E
Sbjct: 604 E 604



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++ ++   G  PD+   NT +         ++   LF ++      P++ +++ILI   
Sbjct: 285 KIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGL 344

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G  ++   +F  M E+G   +   Y+ +IDG+ KS  +  A+ + EEM      P +
Sbjct: 345 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTV 404

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         R  EA  L++    NGI  + ++ S+L D
Sbjct: 405 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLID 447



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A   + ++   GL+P+ ITY T+I G      + EA  LF +       P+S ++  
Sbjct: 525 FNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNA 584

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           +I+      +  DA  +F +   KG   +  T   L+D   K++ ++ A
Sbjct: 585 MIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 633


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 22/174 (12%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A +++ ++ + GL+PD++ +NT+I G     R  EAV++FE +      PN  T+T
Sbjct: 339 NLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYT 398

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   CK G+MD A   F +M + G + +V TY+CL+ GY  ++ M     + EEM + 
Sbjct: 399 MLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQK 458

Query: 127 NISPNIAGR--------------PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              P+  GR              P +A ++Y  M++ G+ P      T+  YN+
Sbjct: 459 GCPPD--GRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEP------TIHTYNM 504



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++ F ++ D G +PD+ TY  ++ GY +  R+D    L E++T     P+  
Sbjct: 406 KRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGR 465

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEE 122
           T+  LI         DDA  ++ KM++KG +  + TY+ ++  YF   +N      V+EE
Sbjct: 466 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEE 525

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           M    I P++             GRP EA +  + M++ G+
Sbjct: 526 MHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGM 566



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F ++ DR   PD+ +Y  ++  +C+   L EA +++ ++    LKP+ +    +I+
Sbjct: 309 ANQVFDRMRDR-YAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIE 367

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              +  R  +A  MF  M  KGP  NV TY+ LI  + K   M  A   +EEM +    P
Sbjct: 368 GLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQP 427

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDG----LLLSTLADYNLQSSGSQ 172
           ++            A R      L + M + G  PDG     L+  L + N+    ++
Sbjct: 428 DVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAAR 485



 Score = 43.9 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTI 67
           D A +++ ++  +GLEP I TYN ++  Y    R       ++E++    + P+  ++T+
Sbjct: 481 DDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTV 540

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
            I+   + GR ++A     +M++KG K   + Y+
Sbjct: 541 FINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYN 574



 Score = 42.4 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 15/138 (10%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +   I  + +   +  AV +FE +          +F  L+ A  +EG   +A  +F +M 
Sbjct: 258 FKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMR 317

Query: 90  EK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           ++  P  ++ +Y+ L+  +  ++N+  A  V+ EM EN + P++              R 
Sbjct: 318 DRYAP--DLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR 375

Query: 137 TEAMQLYDSMLRNGIMPD 154
            EA+++++ M   G  P+
Sbjct: 376 PEAVKMFELMKAKGPAPN 393


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 13/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+ LF  L  RGL PD ITY+T++ G+   NRLD A+ L +++   +++P+++ +  
Sbjct: 175 LDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNA 234

Query: 68  LIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           L+    + G  + A  ++ +++ + G   N+ TY+ ++DG  K    K A DV+E M  N
Sbjct: 235 LLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVAN 294

Query: 127 NISPN-------IAG--RPTE---AMQLYDSMLRNGIMPDGLLLSTL 161
           N  P+       I G  R T+   A ++Y  M++ G++PD ++ ++L
Sbjct: 295 NHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSL 341



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 13/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKP 60
            +K   LD AL L  ++    ++PD + YN ++ G       ++A++++E+L       P
Sbjct: 204 FVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASP 263

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  T+ +++D  CK G   +A  ++ +M+    + +++TY  +I G  +S ++ SA  VY
Sbjct: 264 NLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVY 323

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
            EM +  + P++            AGR  EA + +DSM  +GI
Sbjct: 324 SEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGI 366



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 30/164 (18%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQ 57
           L ++  +D AL L+ Q+ D+GL+ D++ +N +I G CS  ++DEA QL     EK  C  
Sbjct: 555 LCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCC- 613

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             PN +T+  L+D F + G  D A  ++  +LE G   ++++Y+  I G           
Sbjct: 614 --PNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKG----------- 660

Query: 118 DVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                +C  N +P       E +QL + ML +GI+P  +  + L
Sbjct: 661 -----LCSCNRTP-------EGVQLLNEMLASGIIPTAITWNIL 692



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           R + P++ TYN ++   C    LD AV LF+ L C  L P+ IT++ L+  F K  R+D+
Sbjct: 153 RRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDN 212

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-NISPNIA------ 133
           A  +  +M     + + V Y+ L+ G F++   + A  V+E++  +   SPN+A      
Sbjct: 213 ALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVML 272

Query: 134 ------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 G   EA  +++ M+ N   PD +   T+
Sbjct: 273 DGLCKLGMFKEAGDVWERMVANNHQPDMITYGTM 306



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + +L++  +    G E D  +Y+++I G C   RLD+AV+L+EK++    KPNS  +  L
Sbjct: 422 NKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNAL 481

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           I+ FC+  +  DA  ++S+M E       +TY+ LI G  K++    A     EM E
Sbjct: 482 INGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLE 538



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A+KL+ +++    +P+   YN +I G+C  ++  +A++++ ++      P 
Sbjct: 450 LCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPT 509

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  LI   CK  +  +A+    +MLEKG   +V TY  LI G  + + +  A  ++ 
Sbjct: 510 TITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWN 569

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSML-RNGIMPDGLLLSTLAD 163
           ++ +  +  ++            AG+  EA QL   M  +N   P+ +  +TL D
Sbjct: 570 QILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMD 624



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +D A  L+  L  D  L PD++T++T+I G C     ++++Q+ E+      + +  +++
Sbjct: 385 VDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYS 444

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I   CK+GR+DDA  ++ K+     K N   Y+ LI+G+ ++     A  VY +M EN
Sbjct: 445 SMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAEN 504

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + SP              A +  EA +    ML  G M D
Sbjct: 505 DCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLD 544



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 88/207 (42%), Gaps = 47/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----- 56
           L +   +D+A +++ ++   GL PD++ YN+++ G+C   R+ EA + ++ ++       
Sbjct: 310 LCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNV 369

Query: 57  ------------------------------QLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                                          L P+ +TF+ +I   C++G  + +  +  
Sbjct: 370 TSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILE 429

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
           +    G + +  +YS +I G  K   +  A  +YE++  ++  PN             A 
Sbjct: 430 EARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQAS 489

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + ++A+++Y  M  N   P  +  +TL
Sbjct: 490 KFSDAIRVYSQMAENDCSPTTITYNTL 516



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A  L+  + + GL PDII+YNT I G CS NR  E VQL  ++    + P +IT+ I
Sbjct: 632 FDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNI 691

Query: 68  LIDAFCKEG 76
           L+ A  K G
Sbjct: 692 LVRAVIKYG 700


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 23/160 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++E  LD A  LF  + DRG  PD++TY++II        +D+A Q+F ++    + P+
Sbjct: 218 LLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPD 277

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T L+  +C  G+  +A  +F KM   G + +VVTY+ L+D                
Sbjct: 278 CIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMD---------------- 321

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +C+N       G+ TEA +++DS+++ G  PD     TL
Sbjct: 322 YLCKN-------GKSTEARKIFDSLVKRGHKPDSTTYGTL 354



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 14/171 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-P-NSITFTILIDAFCK 74
           ++ + G +PD+ +Y  ++ G C      +A+ L   +   + + P + + +T +I+   +
Sbjct: 161 RMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLR 220

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
           EG++D A  +F  ML++GP  +VVTYS +I    K+Q M  A  V+  M +N + P+   
Sbjct: 221 EGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIM 280

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                     +G+P EA+ ++  M R+G+ PD +  + L DY  ++  S E
Sbjct: 281 YTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTE 331



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 12/152 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   +L  ++ DRG+  D I +N I+   C   R+ EA  LF+ +  + ++PN+ T+  L
Sbjct: 470 DKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTL 529

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C +G+MD+A  +   M+  G K + VTY+ +I+GY ++  ++    +  EM    +
Sbjct: 530 IDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGV 589

Query: 129 SPNI------------AGRPTEAMQLYDSMLR 148
           +P I            AGR   A +LY  M++
Sbjct: 590 NPGIVTYEMLLQGLFQAGRTVAAKELYLRMIK 621



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 70/124 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF  +   G+EP+  TYNT+I GYC   ++DEA++L   +    +KP+
Sbjct: 498 LCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPS 557

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I+ + + GR++D   +  +M  KG    +VTY  L+ G F++    +A ++Y 
Sbjct: 558 DVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYL 617

Query: 122 EMCE 125
            M +
Sbjct: 618 RMIK 621



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL +F  +  +GL PDI+ Y T++   C+  R+D+A+  F  L    L PN +
Sbjct: 395 KHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIV 454

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            FT LI   C   + D    +  +M+++G   + + ++ ++    K   +  A ++++ M
Sbjct: 455 VFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLM 514

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               I PN            + G+  EAM+L   M+ NG+ P  +  +T+
Sbjct: 515 VRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTI 564



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +F ++   G+EPD++TY  ++   C   +  EA ++F+ L     KP+S T+  L+ 
Sbjct: 297 AIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLH 356

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +  EG + +   +   M++KG +     ++ ++  Y K   +  A  V+  M +  ++P
Sbjct: 357 GYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNP 416

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I            AGR  +A+  ++S+   G+ P+ ++ +TL
Sbjct: 417 DIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTL 459



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCS------------------------------- 39
           A K+F  L  RG +PD  TY T++ GY +                               
Sbjct: 332 ARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMG 391

Query: 40  ----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                N++DEA+ +F  +    L P+ + +  ++D  C  GR+DDA   F+ +  +G   
Sbjct: 392 AYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAP 451

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----------NNISPNI--AGRPTEAMQLY 143
           N+V ++ LI G           ++  EM +          N I  N+   GR  EA  L+
Sbjct: 452 NIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLF 511

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R GI P+    +TL D
Sbjct: 512 DLMVRIGIEPNTNTYNTLID 531


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 22/174 (12%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A +++ ++ + GL+PD++ +NT+I G     R  EAV++FE +      PN  T+T
Sbjct: 85  NLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYT 144

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   CK G+MD A   F +M + G + +V TY+CL+ GY  ++ M     + EEM + 
Sbjct: 145 MLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQK 204

Query: 127 NISPNIAGR--------------PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              P+  GR              P +A ++Y  M++ G+ P      T+  YN+
Sbjct: 205 GCPPD--GRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEP------TIHTYNM 250



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++ F ++ D G +PD+ TY  ++ GY +  R+D    L E++T     P+  
Sbjct: 152 KRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGR 211

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEE 122
           T+  LI         DDA  ++ KM++KG +  + TY+ ++  YF   +N      V+EE
Sbjct: 212 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEE 271

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
           M    I P++             GRP EA +  + M++ G+
Sbjct: 272 MHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGM 312



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 13/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F ++ DR   PD+ +Y  ++  +C+   L EA +++ ++    LKP+ +    +I+
Sbjct: 55  ANQVFDRMRDR-YAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIE 113

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              +  R  +A  MF  M  KGP  NV TY+ LI  + K   M  A   +EEM +    P
Sbjct: 114 GLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQP 173

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            A R      L + M + G  PDG   + L
Sbjct: 174 DVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNAL 216



 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTI 67
           D A +++ ++  +GLEP I TYN ++  Y    R       ++E++    + P+  ++T+
Sbjct: 227 DDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTV 286

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
            I+   + GR ++A     +M++KG K   + Y+     + K+
Sbjct: 287 FINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKA 329



 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 15/139 (10%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
            +   I  + +   +  AV +FE +          +F  L+ A  +EG   +A  +F +M
Sbjct: 3   AFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM 62

Query: 89  LEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
            ++  P  ++ +Y+ L+  +  ++N+  A  V+ EM EN + P++              R
Sbjct: 63  RDRYAP--DLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQR 120

Query: 136 PTEAMQLYDSMLRNGIMPD 154
             EA+++++ M   G  P+
Sbjct: 121 RPEAVKMFELMKAKGPAPN 139


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK   ++ A +L  ++   G+ P++  YN++I   C   +L+EA  LF  +    L PN
Sbjct: 340 LIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPN 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+TILID F +  ++D A   F+KM+E G  A V +Y+ +I+   K   MK A  +++
Sbjct: 400 DVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFK 459

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  + P +A            G   +A +LY  M   GI P+ +  + L
Sbjct: 460 EMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTAL 511



 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 75/118 (63%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ D+GL+P + TY ++I GYC    + +A +L+ ++T   + PN++TFT LI   C
Sbjct: 457 LFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLC 516

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           +  +M +A+ +F +M+E     N VTY+ LI+G+ +  N   AF++ +EM +  +SP+
Sbjct: 517 QINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPD 574



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   LD A   F ++ + G+   + +YN++I   C   ++  A  LF+++    LKP   
Sbjct: 412 RRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVA 471

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI  +CK+G +  A  ++ +M  KG   N VT++ LI G  +   M  A  +++EM
Sbjct: 472 TYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEM 531

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            E  I PN              G  T A +L D M++ G+ PD
Sbjct: 532 VELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPD 574



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 18/173 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL+ ++T +G+ P+ +T+  +ICG C +N++ EA +LF+++  +++ PN +T+ +LI+
Sbjct: 489 AFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIE 548

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV----------Y 120
             C+EG    A  +  +M++KG   +  TY  LI G   +  +  A +            
Sbjct: 549 GHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRL 608

Query: 121 EEMCENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           +E+C   +       GR  EA+     M+  G+  D      L  Y +  SG+
Sbjct: 609 DELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMD------LVSYAVLISGA 655



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
            +L  ++  +G++PD + Y  +I G+     L +A + +  +      PNS+T+T L++ 
Sbjct: 664 FELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNG 723

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----NN 127
             K G +++A ++F +ML      N +TY C +D   K  NM++A  ++  M +    N 
Sbjct: 724 LFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANT 783

Query: 128 ISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++ NI        G+  EA +L D M+  G++PD +  ST 
Sbjct: 784 VTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTF 824



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E +   A +L  ++  +GL PD  TY  +I G CS  R+ EA +    L     + + +
Sbjct: 552 REGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDEL 611

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T L+  FCKEGR+ +A +   +M+ +G + ++V+Y+ LI G   +QN +  F++  EM
Sbjct: 612 CYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGAL-NQNDRILFELLREM 670

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               + P+             +G   +A + +  M+  G +P+ +  + L +
Sbjct: 671 HGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVN 722



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IK  +L  A + +  +   G  P+ +TY  ++ G      ++EA  LF+++   +  PN
Sbjct: 689 FIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPN 748

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+   +D   KEG M++A  + + ML+ G  AN VTY+ LI GY +    + A  + +
Sbjct: 749 HITYGCFLDHLTKEGNMENALQLHNAMLQ-GSFANTVTYNILIRGYCQIGKFQEAAKLLD 807

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M    + P+              G    AM +++ ML+ G+ PD ++ + L
Sbjct: 808 VMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFL 859



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            +  +++  ++ + G  P     + +I G   +  ++ A +L  K+  + + PN   +  
Sbjct: 311 FEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNS 370

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I++ CK G++++A ++FS M E+G   N VTY+ LIDG+ +   +  AF  + +M E  
Sbjct: 371 MINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECG 430

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           IS  +             G+   A  L+  M+  G+ P      T+A Y    SG
Sbjct: 431 ISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKP------TVATYTSLISG 479



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 1/141 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE +++ AL+L   +  +G   + +TYN +I GYC + +  EA +L + +  + + P+
Sbjct: 759 LTKEGNMENALQLHNAML-QGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPD 817

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++  I  +CK G +D A  M+  ML++G K + V ++ LI     +  +  A  +  
Sbjct: 818 CITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRN 877

Query: 122 EMCENNISPNIAGRPTEAMQL 142
           +M    + P  +   +  +QL
Sbjct: 878 DMMLRGLKPTQSTYHSLMVQL 898



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A ++  Q    G    I+TYN  I G C   R+ EAV++   L    LK + +T+  
Sbjct: 241 FNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCT 300

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C+    +    M  +M+E G   +    S LI+G  K  +++ AF++  ++ +  
Sbjct: 301 LVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLG 360

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + PN+             G+  EA  L+  M   G+ P+ +  + L D
Sbjct: 361 VVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILID 408



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            L+LF  L + G++PD   Y  ++   C L   ++A ++  +        + +T+ + I+
Sbjct: 209 VLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFIN 268

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK  R+ +A  +   + EKG KA++VTY  L+ G  + Q  +   ++ +EM E    P
Sbjct: 269 GLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVP 328

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + A            G    A +L + + + G++P+  + +++ +
Sbjct: 329 SEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMIN 373



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 12/158 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D GL P++ T + ++     + +  + ++LF+ L    +KP+   +T+++   C+   
Sbjct: 181 MRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKD 240

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
            + A  + ++    G   ++VTY+  I+G  KS+ +  A +V   + E  +  ++    T
Sbjct: 241 FNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCT 300

Query: 138 ------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         M++ D M+  G +P    +S L +
Sbjct: 301 LVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIE 338



 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++DAA+ ++  +  RGL+PD + +N +I   C    LD A+QL   +    LKP   
Sbjct: 830 KRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQS 889

Query: 64  TFTILIDAFCKEGRM 78
           T+  L+    +  R+
Sbjct: 890 TYHSLMVQLAQRARL 904


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KL  ++ ++G +PD++TYN +I G C   RLDEA++    +     +PN I
Sbjct: 94  KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI 153

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  I++ + C  GR  DA  + S ML KG   +VVT++ LI+   +   +  A D+ E+M
Sbjct: 154 THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM 213

Query: 124 CENNISPN-IAGRP-----------TEAMQLYDSMLRNGIMPDGLLLSTL 161
             +  +PN ++  P             A++  D M+  G  PD +  +TL
Sbjct: 214 PMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 263



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+++  QL+ +G  P +ITYNT+I G   + + + A++L +++    LKP+
Sbjct: 267 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD 326

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+    +EG++D+A   F  +   G + N +TY+ ++ G  KS+    A D   
Sbjct: 327 IITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLA 386

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL------LLSTLADYNLQSSGSQEH 174
            M           +PTEA     ++L  GI  +GL      LL+ L    L    S E 
Sbjct: 387 YMISKRC------KPTEATY---TILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQ 436



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D A++    +  RG  PDI+TYNT++   C   ++D AV++  +L+     P  I
Sbjct: 234 KEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLI 293

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +ID   K G+ + A  +  +M  KG K +++TYS L+ G  +   +  A   + ++
Sbjct: 294 TYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL 353

Query: 124 CENNISPN 131
               I PN
Sbjct: 354 EGLGIRPN 361



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 47/206 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--------------------- 42
           KE  LD A+K    +   G +P++IT+N I+   CS  R                     
Sbjct: 129 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVV 188

Query: 43  --------------LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                         L  A+ + EK+      PNS+++  L+  FCKE +MD A      M
Sbjct: 189 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 248

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           + +G   ++VTY+ L+    K   +  A ++  ++     SP +             G+ 
Sbjct: 249 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 308

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLA 162
             A++L D M R G+ PD +  S+L 
Sbjct: 309 ERAIKLLDEMRRKGLKPDIITYSSLV 334



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L ++  L  A+ +  ++   G  P+ ++YN ++ G+C   ++D A++  + +      P
Sbjct: 196 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 255

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  L+ A CK+G++D A  + +++  KG    ++TY+ +IDG  K    + A  + 
Sbjct: 256 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLL 315

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +EM    + P+I             G+  EA++ +  +   GI P+ +  +++
Sbjct: 316 DEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSI 368



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 23/127 (18%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
           C  + + +A++L +++     KP+ +T+ +LI+  CKEGR+D+A    + M   G + NV
Sbjct: 93  CKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNV 152

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
           +T++ ++                  MC         GR  +A +L   MLR G  P  + 
Sbjct: 153 ITHNIIL----------------RSMCS-------TGRWMDAEKLLSDMLRKGCSPSVVT 189

Query: 158 LSTLADY 164
            + L ++
Sbjct: 190 FNILINF 196


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +++ A+ LF ++   G EPD +TY  I+ G C   RLDEAV+ FE     ++  N++
Sbjct: 377 KNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAM 436

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID   K GR+D+A   F +M+E+G   +   Y+ LID   KS  M+ A  +++ M
Sbjct: 437 FYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRM 496

Query: 124 ----CENNISPN---IAG-----RPTEAMQLYDSMLRNGIMP 153
               C+  +      I+G     R  EA++L+D M+  GI P
Sbjct: 497 EKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITP 538



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 17/191 (8%)

Query: 2   LIKECH----LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LI+ C+     D+ L L+ ++ +RGLE     Y+ +I G C   R  E   +FE +    
Sbjct: 301 LIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKG 360

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
            K N   +T LIDA+ K G +++A  +F +M  +G + + VTY  +++G  KS  +  A 
Sbjct: 361 CKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAV 420

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           + +E   +N ++ N             AGR  EA + ++ M+  G   D    + L D  
Sbjct: 421 EYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALID-A 479

Query: 166 LQSSGSQEHCI 176
           L  SG  E  +
Sbjct: 480 LAKSGKMEEAL 490



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +   A++ F  +  R LEPD ITY T+I    S    D  + L++++    L+    
Sbjct: 272 KAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPH 331

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++++I   CK+GR  + + +F  M +KG KANV  Y+ LID Y K+ N+  A +++E M
Sbjct: 332 AYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERM 391

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 P+             +GR  EA++ ++    N +  + +  S+L D
Sbjct: 392 KGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLID 443



 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++  L ++ ++ + G+EP + T+N ++ G  +   ++ A ++FE + C ++ P+ +++  
Sbjct: 206 VEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNT 265

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +CK G    A   F+ M ++  + + +TY  LI   +   N  S   +Y+EM E  
Sbjct: 266 MIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERG 325

Query: 128 --ISPNIA----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             I P+            GR  E   ++++M + G   +  + + L D
Sbjct: 326 LEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALID 373



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A K F ++ +RG   D   YN +I       +++EA+ LF+++        
Sbjct: 445 LGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQT 504

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILI    KE R ++A  ++  M++KG      ++  L  G   S  +  A  + +
Sbjct: 505 VYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILD 564

Query: 122 EMCENNISPNI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           E+    + P             AGR  +A +L D ++  G    G + + L +  L+ +G
Sbjct: 565 ELAPMGVIPETAFEDMINVLCKAGRTEQACKLADGIVDRGREVPGRVRTILIN-ALRKAG 623

Query: 171 SQE 173
           + +
Sbjct: 624 NAD 626



 Score = 42.0 bits (97), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 19/131 (14%)

Query: 50  FEKLTCV--QLKPNSITFTI-----LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           F+++ C+  + K      T+     LI +F   G +++   ++ +M E G + ++ T++ 
Sbjct: 171 FDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNF 230

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           L++G   S  ++SA  V+E M    I P++            AG   +AM+ +  M +  
Sbjct: 231 LLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRN 290

Query: 151 IMPDGLLLSTL 161
           + PD +   TL
Sbjct: 291 LEPDKITYLTL 301


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 78/126 (61%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LDAAL+L  ++   G++P+++ Y+ ++ GYC   R  +  ++FE ++   +KP+ I FT
Sbjct: 173 ELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFT 232

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CKEG+   A  +   M+++G + NVVTY+ LI+   K  +++ A  + +EM + 
Sbjct: 233 GLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDK 292

Query: 127 NISPNI 132
            ++P++
Sbjct: 293 GVAPDV 298



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   +   G+  D++TY T+I G C  + LD A++L +++    ++PN + ++ L+ 
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLR 201

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ GR  D   +F  M  +G K +V+ ++ LID   K      A  V + M +  + P
Sbjct: 202 GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEP 261

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G   EA+ L   M   G+ PD +  +TL
Sbjct: 262 NVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTL 304



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 12/143 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P+ ++Y T++ G C+  R  EAV L   +    ++ + +T+  LI   C    +D A  
Sbjct: 120 RPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALE 179

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +  +M   G + NVV YSCL+ GY +S   +    V+E+M    I P++           
Sbjct: 180 LLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLC 239

Query: 133 -AGRPTEAMQLYDSMLRNGIMPD 154
             G+  +A ++ D M++ G+ P+
Sbjct: 240 KEGKTGKAAKVKDMMVQRGLEPN 262



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 14/154 (9%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+F  ++ RG++PD+I +  +I   C   +  +A ++ + +    L+PN +T+ +LI++ 
Sbjct: 214 KVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSL 273

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN--ISP 130
           CKEG + +A  +  +M +KG   +VVTY+ LI G      M  A    EEM + +  + P
Sbjct: 274 CKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEP 333

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIM 152
           ++             GR T+A+++ + M   G M
Sbjct: 334 DVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCM 367



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 17/155 (10%)

Query: 26  DIITYNTIICGYCSL--NRLDEAVQLFEKLT---CVQLKPNSITFTILIDAFCKEGRMDD 80
           D ++YNT++   C    + L +A  L   ++       +PN++++T ++   C   R  +
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A  +   M   G +A+VVTY  LI G   +  + +A ++ +EMC + + PN+        
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLR 201

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               +GR  +  ++++ M R GI PD ++ + L D
Sbjct: 202 GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLID 236



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 41/169 (24%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPD----------------------------------- 26
           L KE     A K+   +  RGLEP+                                   
Sbjct: 238 LCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPD 297

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKL----TCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           ++TYNT+I G   +  +DEA+   E++    T V+  P+ +TF  +I   CK GRM  A 
Sbjct: 298 VVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVE--PDVVTFNSVIHGLCKIGRMTQAV 355

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            +   M E+G   N+VTY+ LI G+ +   +K A ++ +E+  + + P+
Sbjct: 356 KVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPD 404



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 11/171 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+K+   + +RG   +++TYN +I G+  ++++  A+ L ++L    L+P+
Sbjct: 345 LCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPD 404

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T++ILI+ F K   +D A      M ++G KA +  Y  L+    +   M+ A  ++ 
Sbjct: 405 SFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFN 464

Query: 122 EMCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +N     IA           G      QL   ML  G+ PD +  S L
Sbjct: 465 EMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSML 515



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 13/148 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL--TCVQLKPN 61
           K   +D A K    +  RG++ ++  Y  ++   C    ++ A+ LF ++   C     +
Sbjct: 417 KMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNC---GLD 473

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I ++ +I   CK G M     +   ML++G   + VTYS LI+ Y K  +++ A  V +
Sbjct: 474 AIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLK 533

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRN 149
           +M  +   P++A        ++DS+++ 
Sbjct: 534 QMTASGFVPDVA--------VFDSLIKG 553



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ LF ++ D+    D I Y+T+I G C    +    QL + +    L P+++T+++
Sbjct: 456 MERAMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSM 514

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ + K G +++A  +  +M   G   +V  +  LI GY           +  EM   N
Sbjct: 515 LINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKN 574

Query: 128 IS--PNI 132
           ++  P I
Sbjct: 575 VAFDPKI 581


>gi|357112338|ref|XP_003557966.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 538

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+++   +   G EP I TYN++I G C + RL++A  L  KL     +  
Sbjct: 203 LCKRGRVTRAMEVLDAMRGVGCEPTIRTYNSLIGGLCYVGRLEDARDLLNKLKDSPKQTA 262

Query: 62  SI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            I TFTI++D FCK GR DDA  +F   +  G    + TY+ L++G+ K  ++  A+++ 
Sbjct: 263 DIYTFTIVLDGFCKVGRTDDAMAIFEDAVRTGLSPTIFTYNALLNGHCKEGHLLKAYNLL 322

Query: 121 EEMCENNISPN-------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EMC+N   P               AG  + A Q +  M   G+  DG  L TL
Sbjct: 323 MEMCDNETCPPDKISFSIVLPALLRAGEISAAWQTFKRMEHAGLEADGRALDTL 376



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 15/160 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A +   ++  RG  P +  ++ ++   C   R+  A+++ + +  V  +P   T+  L
Sbjct: 175 DEAKETLDEMLARGYLPTVSAFSAVVGCLCKRGRVTRAMEVLDAMRGVGCEPTIRTYNSL 234

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I   C  GR++DA  + +K L+  PK  A++ T++ ++DG+ K      A  ++E+    
Sbjct: 235 IGGLCYVGRLEDARDLLNK-LKDSPKQTADIYTFTIVLDGFCKVGRTDDAMAIFEDAVRT 293

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
            +SP I          Y+++L NG   +G LL     YNL
Sbjct: 294 GLSPTIF--------TYNALL-NGHCKEGHLLKA---YNL 321



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 23/181 (12%)

Query: 9   DAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D+A+ LF  L   G + PD  ++   +  +C     DEA +  +++      P    F+ 
Sbjct: 139 DSAMALFRALEPNGTVAPDAHSFAIAVQCFCRKGAPDEAKETLDEMLARGYLPTVSAFSA 198

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN- 126
           ++   CK GR+  A  +   M   G +  + TY+ LI G      ++ A D+  ++ ++ 
Sbjct: 199 VVGCLCKRGRVTRAMEVLDAMRGVGCEPTIRTYNSLIGGLCYVGRLEDARDLLNKLKDSP 258

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             + +I             GR  +AM +++  +R G+ P      T+  YN   +G   H
Sbjct: 259 KQTADIYTFTIVLDGFCKVGRTDDAMAIFEDAVRTGLSP------TIFTYNALLNG---H 309

Query: 175 C 175
           C
Sbjct: 310 C 310



 Score = 43.9 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYC-----SLNRLDEAVQLFEKLTCV 56
           L++   + AA + F ++   GLE D    +T+  G C      ++ L +A ++F KL   
Sbjct: 345 LLRAGEISAAWQTFKRMEHAGLEADGRALDTLTRGLCRQCAADISALRDAKEVFGKLVSS 404

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             +P S T+ ++  A  + G +D A  +   M  KG       Y+ ++           A
Sbjct: 405 GHEPVSYTYCLMAQALARGGEVDAAVAILDDMARKGYALRKRAYTDVVRALCDRSRTSEA 464

Query: 117 FDVYEEMCENNISP------------NIAGRPTEAMQLYDSMLRNGIM 152
             V   +   +  P            +  GR  +AM +Y + ++ G++
Sbjct: 465 VRVLAVVIARDFVPGRNAFDALLGELSRQGRWPDAMAVYAAAVKRGVV 512


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 77/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA+++F  +  RGL P+ + Y+ +I G C   ++D A+++  ++      P+
Sbjct: 417 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 476

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+ ILID  CK G ++ A   F +MLE G K +V TY+ LI G+ K+ N  +A  V++
Sbjct: 477 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFD 536

Query: 122 EMCENNISPNI 132
           +M  +  S N+
Sbjct: 537 DMSSSRCSANV 547



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 48/210 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA+++F  +  RGL P+ + Y+ +I G C   ++D A+++  ++      P+
Sbjct: 136 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 195

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
           +IT+ +LID  CK G ++ A   F +MLE G K +V TY+ LI G+ K+ N  +A     
Sbjct: 196 TITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLA 255

Query: 117 ---------FDVY----------------------EEMCENNISPNIA------------ 133
                     D++                      E++  N  +P IA            
Sbjct: 256 QETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKM 315

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           GR  EA+ L   ++ NG  PD +  ++L D
Sbjct: 316 GRLEEAIDLLRKIVDNGCTPDVVTYTSLID 345



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A+ L  ++T  G  P I TYN ++ G C + RL+EA+ L  K+      P+
Sbjct: 277 LAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 336

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LID   KE R  +A  +F +M  +G   + V Y+ LI    ++  +  A  VY+
Sbjct: 337 VVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK 396

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  +   P++            AGR   A++++ SM   G+ P+ ++ S L
Sbjct: 397 TMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 448



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ L  ++T  G  P I TYN ++ G C + RL+EA+ L  K+      P+ +T+T 
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID   KE R  +A  +F +M  +G   + V Y+ LI    ++  +  A  VY+ M  + 
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             P++            AGR   A++++ SM   G+ P+ ++ S L
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 167



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 48/210 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-------------------- 41
           L K   ++AA   F ++ + G +PD+ TYN +I G+C                       
Sbjct: 206 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTI 265

Query: 42  ----------------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
                           +++EAV L EK+T     P   T+  L++  CK GR+++A  + 
Sbjct: 266 DIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 325

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            K+++ G   +VVTY+ LIDG  K +    A+ +++EM    ++ +              
Sbjct: 326 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQT 385

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           G+  +A  +Y +M  +G +PD + LST+ D
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMID 415



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A  ++  +T  G  PD++T +T+I G     R+  AV++F+ +    L PN
Sbjct: 101 LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPN 160

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LI   CK  +MD A  M ++M +     + +TY+ LIDG  KS ++++A   ++
Sbjct: 161 EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFD 220

Query: 122 EMCENNISPNI 132
           EM E    P++
Sbjct: 221 EMLEAGCKPDV 231



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A  ++  +T  G  PD++T +T+I G     R+  AV++F+ +    L PN
Sbjct: 382 LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPN 441

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LI   CK  +MD A  M ++M +     + +TY+ LIDG  KS ++++A   ++
Sbjct: 442 EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFD 501

Query: 122 EMCENNISPNI 132
           EM E    P++
Sbjct: 502 EMLEAGCKPDV 512



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 61/126 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL++  Q+      PD ITYN +I G C    ++ A   F+++     KP+
Sbjct: 452 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD 511

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ ILI  FCK G  D A  +F  M      ANVVTY  LI G  K + +  A   ++
Sbjct: 512 VYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQ 571

Query: 122 EMCENN 127
            M E  
Sbjct: 572 HMKERG 577



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 12/134 (8%)

Query: 42  RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
           +++EAV L EK+T     P   T+  L++  CK GR+++A  +  K+++ G   +VVTY+
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRN 149
            LIDG  K +    A+ +++EM    ++ +              G+  +A  +Y +M  +
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 150 GIMPDGLLLSTLAD 163
           G +PD + LST+ D
Sbjct: 121 GCVPDVVTLSTMID 134



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A+ L  ++ D G  PD++TY ++I G     R  EA +LF+++    L  +
Sbjct: 31  LCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALD 90

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +T LI    + G++  A+ ++  M   G   +VVT S +IDG  K+  + +A  +++
Sbjct: 91  TVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFK 150

Query: 122 EMCENNISPN 131
            M    ++PN
Sbjct: 151 SMEARGLAPN 160



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF ++  RGL  D + Y  +I       ++ +A  +++ +T     P+ +T + +ID
Sbjct: 75  AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 134

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K GR+  A  +F  M  +G   N V YS LI G  K++ M  A ++  +M +   +P
Sbjct: 135 GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 194

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +             +G    A   +D ML  G  PD      +  YN+  SG
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPD------VYTYNILISG 240



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF ++  RGL  D + Y  +I       ++ +A  +++ +T     P+ +T + +ID
Sbjct: 356 AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 415

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K GR+  A  +F  M  +G   N V YS LI G  K++ M  A ++  +M +   +P
Sbjct: 416 GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 475

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +             +G    A   +D ML  G  PD      +  YN+  SG
Sbjct: 476 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD------VYTYNILISG 521


>gi|414591640|tpg|DAA42211.1| TPA: hypothetical protein ZEAMMB73_215753 [Zea mays]
          Length = 299

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+++ Y T++ GYC + R+DE + LF ++    +KP++I ++I
Sbjct: 35  MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSI 94

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   + GR   A + F +M E G   ++ TY+ ++ G FK++    A  +++E+   N
Sbjct: 95  IIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMN 154

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI              R  EA  L+ S+ R+ ++P  +  S +
Sbjct: 155 VKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIM 200



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 75/122 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + GL PD + Y+ ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 3   AQNIFDLKVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVN 62

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML++G K + + YS +IDG F++     A   + EM E+ I+ 
Sbjct: 63  GYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAM 122

Query: 131 NI 132
           +I
Sbjct: 123 DI 124



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 45  EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           +A  +F+    V L P+++ +++L+D +C  G+M+ A  +F  M+  G + NVV Y  L+
Sbjct: 2   DAQNIFDLKVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 61

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIM 152
           +GY K   +     ++ EM +  I P+             AGR   A   +  M  +GI 
Sbjct: 62  NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIA 121

Query: 153 PD 154
            D
Sbjct: 122 MD 123



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  DI TYN ++ G       DEA+ LF++L  + +K N IT   +ID   +
Sbjct: 112 FHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQ 171

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +       +VVTYS +I    K   ++ A D++  M      PN
Sbjct: 172 TRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 228



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ +IIT NT+I G     R++EA  LF  ++  +L P+
Sbjct: 134 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 193

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++I+I    KEG +++A  MFS M   G + N    + ++    K   +  A     
Sbjct: 194 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 253

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 254 KIDERNFS 261


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A  L  Q+ ++G +P   TY  +I   C    +D+A  LF+++     KPN  T+T
Sbjct: 281 RLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYT 340

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LID  C++G++++A  +  KM++     +V+TY+ LI+GY K   +  AF++   M + 
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              PN+             G+P +A+ L   ML NG+ PD +  + L D
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLID 449



 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 12/171 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L  ++ D GL PDI++YN +I G C    ++ A +L   + C  ++P+ +TFT +I+
Sbjct: 425 AVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIIN 484

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-- 128
           AFCK+G+ D A+     ML KG   + VT + LIDG  K    + A  + E + +  I  
Sbjct: 485 AFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILT 544

Query: 129 ---SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
              S N+         +  E + +   + + G++P  +  +TL D  ++S 
Sbjct: 545 TPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSG 595



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 13/161 (8%)

Query: 7   HLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           +L  ALK+F  ++ +    P+ ++Y+ +I G C + RL+EA  L +++     +P++ T+
Sbjct: 245 NLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTY 304

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T+LI A C  G +D A  +F +M+ +G K NV TY+ LIDG  +   ++ A  V  +M +
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVK 364

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + I P++             GR   A +L   M +    P+
Sbjct: 365 DRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPN 405



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P +ITYN +I GYC   R+  A +L   +     KPN  TF  L++  C+ G+   A  +
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
             +ML+ G   ++V+Y+ LIDG  +  +M +A+ +   M   +I P+             
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCK 488

Query: 133 AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G+   A      MLR GI  D +  +TL D
Sbjct: 489 QGKADVASAFLGLMLRKGISLDEVTGTTLID 519



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K C +   L + G++   GL P ++TY T++ G      +  + ++ E +      P
Sbjct: 555 MLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLP 614

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N   +TI+I+  C+ GR+++A  + S M + G   N VTY+ ++ GY  +  +  A +  
Sbjct: 615 NVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETV 674

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMP----DGLLLSTLADYNLQSS 169
             M E     N         ++Y S+L+  ++     D    ST++D  L+ +
Sbjct: 675 RAMVERGYELN--------DRIYSSLLQGFVLSQKGIDNSEESTVSDIALRET 719



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E H++ A KL   +    +EPD +T+  II  +C   + D A      +    +  +
Sbjct: 451 LCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLD 510

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK------------------MLEKGPKA-------- 95
            +T T LID  CK G+  DA  +                     ML KG K         
Sbjct: 511 EVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLG 570

Query: 96  ---------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
                    +VVTY+ L+DG  +S ++  +F + E M  +   PN+             G
Sbjct: 571 KINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFG 630

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           R  EA +L  +M  +G+ P+
Sbjct: 631 RVEEAEKLLSAMQDSGVSPN 650



 Score = 42.0 bits (97), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I +  +++A CK G  + A M  SK+L+ G   +    + L+ G+ +  N++ A  V++ 
Sbjct: 196 IDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDV 255

Query: 123 MCE------NNISPNI-------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLADYN 165
           M +      N++S +I        GR  EA  L D M   G  P      +L+  L D  
Sbjct: 256 MSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315

Query: 166 L 166
           L
Sbjct: 316 L 316


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 23/160 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++E  LD A  LF  + DRG  PD++TY++II        +D+A Q+F ++    + P+
Sbjct: 217 LLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPD 276

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            I +T L+  +C  G+  +A  +F KM   G + +VVTY+ L+D                
Sbjct: 277 CIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMD---------------- 320

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +C+N       G+ TEA +++DS+++ G  PD     TL
Sbjct: 321 YLCKN-------GKSTEARKIFDSLVKRGHKPDSTTYGTL 353



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 93/179 (51%), Gaps = 14/179 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-P-NSITFT 66
           DA   +  ++ + G +PD+ +Y  ++ G C      +A+ L   +   + + P + + +T
Sbjct: 152 DAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYT 211

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+   +EG++D A  +F  ML++GP  +VVTYS +I    K+Q M  A  V+  M +N
Sbjct: 212 TVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKN 271

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            + P+             +G+P EA+ ++  M R+G+ PD +  + L DY  ++  S E
Sbjct: 272 GVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTE 330



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 12/152 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   +L  ++ DRG+  D I +N I+   C   R+ EA  LF+ +  + ++PN+ T+  L
Sbjct: 469 DKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTL 528

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID +C +G+MD+A  +   M+  G K + VTY+ +I+GY ++  ++    +  EM    +
Sbjct: 529 IDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGV 588

Query: 129 SPNI------------AGRPTEAMQLYDSMLR 148
           +P I            AGR   A +LY  M++
Sbjct: 589 NPGIVTYEMLLQGLFQAGRTVAAKELYLRMIK 620



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 70/124 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A  LF  +   G+EP+  TYNT+I GYC   ++DEA++L   +    +KP+
Sbjct: 497 LCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPS 556

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I+ + + GR++D   +  +M  KG    +VTY  L+ G F++    +A ++Y 
Sbjct: 557 DVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYL 616

Query: 122 EMCE 125
            M +
Sbjct: 617 RMIK 620



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL +F  +  +GL PDI+ Y T++   C+  R+D+A+  F  L    L PN +
Sbjct: 394 KHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIV 453

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            FT LI   C   + D    +  +M+++G   + + ++ ++    K   +  A ++++ M
Sbjct: 454 VFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLM 513

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               I PN            + G+  EAM+L   M+ NG+ P  +  +T+
Sbjct: 514 VRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTI 563



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +F ++   G+EPD++TY  ++   C   +  EA ++F+ L     KP+S T+  L+ 
Sbjct: 296 AIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLH 355

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +  EG + +   +   M++KG +     ++ ++  Y K   +  A  V+  M +  ++P
Sbjct: 356 GYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNP 415

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +I            AGR  +A+  ++S+   G+ P+ ++ +TL
Sbjct: 416 DIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTL 458



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 47/200 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCS------------------------------- 39
           A K+F  L  RG +PD  TY T++ GY +                               
Sbjct: 331 ARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMG 390

Query: 40  ----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                N++DEA+ +F  +    L P+ + +  ++D  C  GR+DDA   F+ +  +G   
Sbjct: 391 AYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAP 450

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----------NNISPNI--AGRPTEAMQLY 143
           N+V ++ LI G           ++  EM +          N I  N+   GR  EA  L+
Sbjct: 451 NIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLF 510

Query: 144 DSMLRNGIMPDGLLLSTLAD 163
           D M+R GI P+    +TL D
Sbjct: 511 DLMVRIGIEPNTNTYNTLID 530



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 54/219 (24%)

Query: 11  ALKLFGQLTDRGL---EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           A+ LF ++   G     P+I TY  +I     L RLD A     ++    L+ + I F+ 
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSP 139

Query: 68  LIDAFCKEGRMDDAT-MMFSKMLEKGPKA------------------------------- 95
           L+   C   R  DA  ++  +M E G K                                
Sbjct: 140 LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADH 199

Query: 96  ------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------AGRPTEAM- 140
                 +VV Y+ +I+G  +   +  A+ +++ M +   SP++        A   T+AM 
Sbjct: 200 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 259

Query: 141 ---QLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
              Q++  M++NG+MPD ++ ++L  +   SSG  +  I
Sbjct: 260 KATQVFTRMVKNGVMPDCIMYTSLV-HGYCSSGKPKEAI 297


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A ++   L + GL P  + YNT+I GYC    L+ A   F ++    +KP+
Sbjct: 165 LCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPD 224

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  CK  R+ +A  +  +M + G    V T++ LID Y ++  ++  F V  
Sbjct: 225 HITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLS 284

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM EN + PN+             G+  EA+ + D M    ++P+  + + + D
Sbjct: 285 EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 338



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++T+R + P+ ITYNT+I G+     L+   +L +++ C  LKPN+IT+ +L+ 
Sbjct: 34  AVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLS 93

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GRM + + +  +M  +    +  TYS L DG  ++ + K+   ++ +  +N ++ 
Sbjct: 94  GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTI 153

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                          G+ + A ++  S++  G++P  ++ +TL
Sbjct: 154 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 196



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL------------------ 49
           L+ A   FGQ+  R ++PD ITYN +I G C   R+  A  L                  
Sbjct: 206 LEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNT 265

Query: 50  --------------FEKLTCVQ---LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                         F  L+ +Q   LKPN +++  +++AFCK G++ +A  +   M  K 
Sbjct: 266 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 325

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              N   Y+ +ID Y +      AF + E+M  N ISP+I              + +EA 
Sbjct: 326 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 385

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           ++ +S+  + ++PD +  +TL
Sbjct: 386 EIINSLSNHRLIPDAVSYNTL 406



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 70/125 (56%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  ++   G+ P I+TYN +I G C+ +++ EA ++   L+  +L P+++++  L
Sbjct: 347 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 406

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A C  G +D A  +  +M + G K+ V TY  LI G   +  +     +Y++M +NN+
Sbjct: 407 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 466

Query: 129 SPNIA 133
            P+ A
Sbjct: 467 VPSNA 471



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 48/220 (21%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   L+A  +L  Q+   GL+P+ ITYN ++ G C   R+ E   L +++   ++ P+ 
Sbjct: 61  IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 120

Query: 63  ITFTILID-----------------------------------AFCKEGRMDDATMMFSK 87
            T++IL D                                     CK+G++  A  +   
Sbjct: 121 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 180

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGR 135
           ++  G     V Y+ LI+GY ++  ++ AF  + +M   +I P+             A R
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 240

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            T A  L   M  NG+ P     +TL D     +G  E C
Sbjct: 241 ITNAQDLLMEMQDNGVNPTVETFNTLIDA-YGRTGQLEKC 279



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 12/116 (10%)

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN+ ++ ++I    + GR  DA  +F +M E+    N +TY+ +IDG+ K  ++++ F +
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            ++M  + + PN             AGR  E   L D M    ++PDG   S L D
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 128



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A+ +   +  + + P+   YN II  Y      D+A  L EK+    + P+ +
Sbjct: 307 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 366

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI   C + ++ +A  + + +       + V+Y+ LI       N+  A D+ + M
Sbjct: 367 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 426

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  I   +            AGR  E   LY  M++N ++P   + + + +
Sbjct: 427 HKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVE 478



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +  +  A ++   L++  L PD ++YNT+I   C    +D+A+ L +++    +K  
Sbjct: 375 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 434

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI      GR+++   ++ KM++     +   ++ +++ Y K  N   A D+ +
Sbjct: 435 VRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRK 494

Query: 122 EMCE 125
           EM +
Sbjct: 495 EMLQ 498


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A ++   L + GL P  + YNT+I GYC    L+ A   F ++    +KP+
Sbjct: 350 LCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPD 409

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  CK  R+ +A  +  +M + G    V T++ LID Y ++  ++  F V  
Sbjct: 410 HITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLS 469

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM EN + PN+             G+  EA+ + D M    ++P+  + + + D
Sbjct: 470 EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 523



 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++T+R + P+ ITYNT+I G+     L+   +L +++ C  LKPN+IT+ +L+ 
Sbjct: 219 AVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLS 278

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GRM + + +  +M  +    +  TYS L DG  ++ + K+   ++ +  +N ++ 
Sbjct: 279 GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTI 338

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                          G+ + A ++  S++  G++P  ++ +TL
Sbjct: 339 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 381



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 13/164 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNSITFTILIDA 71
           + FG L   G  PD   +N  +    +   L EAV +  ++       PN+ ++ ++I  
Sbjct: 150 RAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAG 209

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             + GR  DA  +F +M E+    N +TY+ +IDG+ K  ++++ F + ++M  + + PN
Sbjct: 210 MWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPN 269

Query: 132 I------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                        AGR  E   L D M    ++PDG   S L D
Sbjct: 270 AITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 313



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL------------------ 49
           L+ A   FGQ+  R ++PD ITYN +I G C   R+  A  L                  
Sbjct: 391 LEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNT 450

Query: 50  --------------FEKLTCVQ---LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                         F  L+ +Q   LKPN +++  +++AFCK G++ +A  +   M  K 
Sbjct: 451 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 510

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              N   Y+ +ID Y +      AF + E+M  N ISP+I              + +EA 
Sbjct: 511 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 570

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           ++ +S+  + ++PD +  +TL
Sbjct: 571 EIINSLSNHRLIPDAVSYNTL 591



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 70/125 (56%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  ++   G+ P I+TYN +I G C+ +++ EA ++   L+  +L P+++++  L
Sbjct: 532 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 591

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A C  G +D A  +  +M + G K+ V TY  LI G   +  +     +Y++M +NN+
Sbjct: 592 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 651

Query: 129 SPNIA 133
            P+ A
Sbjct: 652 VPSNA 656



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 48/220 (21%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   L+A  +L  Q+   GL+P+ ITYN ++ G C   R+ E   L +++   ++ P+ 
Sbjct: 246 IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 305

Query: 63  ITFTILID-----------------------------------AFCKEGRMDDATMMFSK 87
            T++IL D                                     CK+G++  A  +   
Sbjct: 306 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 365

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGR 135
           ++  G     V Y+ LI+GY ++  ++ AF  + +M   +I P+             A R
Sbjct: 366 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 425

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            T A  L   M  NG+ P     +TL D     +G  E C
Sbjct: 426 ITNAQDLLMEMQDNGVNPTVETFNTLIDA-YGRTGQLEKC 464



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A+ +   +  + + P+   YN II  Y      D+A  L EK+    + P+ +
Sbjct: 492 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 551

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI   C + ++ +A  + + +       + V+Y+ LI       N+  A D+ + M
Sbjct: 552 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 611

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            +  I   +            AGR  E   LY  M++N ++P
Sbjct: 612 HKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVP 653



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +  +  A ++   L++  L PD ++YNT+I   C    +D+A+ L +++    +K  
Sbjct: 560 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 619

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI      GR+++   ++ KM++     +   ++ +++ Y K  N   A D+ +
Sbjct: 620 VRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRK 679

Query: 122 EMCE 125
           EM +
Sbjct: 680 EMLQ 683



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 15/168 (8%)

Query: 9   DAALKLFGQLTD--RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           D AL+L   L D  R   P + + N ++    SL R  +  + F  L     +P++  + 
Sbjct: 109 DGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWN 168

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             + A    G + +A  M  +M   G P  N  +Y+ +I G +++     A +V++EM E
Sbjct: 169 KAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTE 228

Query: 126 NNISPN-----------IAGRPTEA-MQLYDSMLRNGIMPDGLLLSTL 161
             + PN           I G   EA  +L D M+ +G+ P+ +  + L
Sbjct: 229 RAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVL 276


>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 344

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A +L+ ++    + PD+ T+N++I G+C + +L +A  LF ++    + P+
Sbjct: 27  LCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKDAFGLFSQMVLKNINPS 86

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TFTIL+D  CKEG+M +A  + + M++ G   NVVTY+ +++GY     +     V+ 
Sbjct: 87  VYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFR 146

Query: 122 EMCENNISPNIAGR------------PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +    ++PN                  EA+ L+  M   GI+P  +  S+L D
Sbjct: 147 TISRMGVAPNTQSYNIMINGFCKIKIVNEALILFKEMCCRGIVPITVTYSSLID 200



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 66/117 (56%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           Q+  + +  D++ YNTII G C    +++A +L+ ++   ++ P+  TF  LI  FC  G
Sbjct: 7   QIEGKLVNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIG 66

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           ++ DA  +FS+M+ K    +V T++ L+DG  K   MK A  V   M ++ + PN+ 
Sbjct: 67  QLKDAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVV 123



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 67/114 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +   +   G+ P+++TY +I+ GYC +N +++   +F  ++ + + PN
Sbjct: 97  LCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPN 156

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           + ++ I+I+ FCK   +++A ++F +M  +G     VTYS LIDG  KS  + S
Sbjct: 157 TQSYNIMINGFCKIKIVNEALILFKEMCCRGIVPITVTYSSLIDGLCKSTMLGS 210



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 40/178 (22%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  ++  G+ P+  +YN +I G+C +  ++EA+ LF+++ C  + P ++T++ LID  C
Sbjct: 144 VFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALILFKEMCCRGIVPITVTYSSLIDGLC 203

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYS---CLIDGYFKSQN----------------MK 114
           K      +TM+ S ++      N + Y      ID   KS +                +K
Sbjct: 204 K------STMLGSLLMRCMLMVNHLIYPLTVLYIDALCKSNHLDKAIALVKKIKDQGRLK 257

Query: 115 SAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL------LLSTLADYNL 166
           +A DV++++     S NI        Q Y+ M+ NG+  +GL      LLS + DY +
Sbjct: 258 NAQDVFQDLLIKGYSLNI--------QTYNIMI-NGLCKEGLFDEAEALLSKMDDYGI 306



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 19/122 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  HLD A+ L  ++ D+G                   RL  A  +F+ L       N
Sbjct: 234 LCKSNHLDKAIALVKKIKDQG-------------------RLKNAQDVFQDLLIKGYSLN 274

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ I+I+  CKEG  D+A  + SKM + G   + VTY   I   F     + A  ++ 
Sbjct: 275 IQTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPDAVTYETNIRALFHKDENEKAEKLFR 334

Query: 122 EM 123
           +M
Sbjct: 335 KM 336



 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 95  ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQL 142
           ++VV Y+ +IDG  K + +  A+++Y EM    ISP++A            G+  +A  L
Sbjct: 15  SDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKDAFGL 74

Query: 143 YDSMLRNGIMPDGLLLSTLAD 163
           +  M+   I P     + L D
Sbjct: 75  FSQMVLKNINPSVYTFTILVD 95


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE  +  A + + ++  R L+PDI+TY+ +I G C  +RLDEA ++F  +      P+ 
Sbjct: 267 VKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDV 326

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T++ILI+ +CK  +++    +F +M ++G   N VTY+ LI GY ++  +  A +++  
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           M    + PNI             G+  +A+ +   M +NG+  D
Sbjct: 387 MVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDAD 430



 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 93/167 (55%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A ++FG +  +G  PD++TY+ +I GYC   +++  ++LF +++   +  N++T+T
Sbjct: 306 RLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI  +C+ G+++ A  +F +M+  G   N++TY+ L+ G   +  ++ A  +  +M +N
Sbjct: 366 ILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKN 425

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +I            AG   +A  +Y S+   G+MPD    +T+
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTM 472



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F Q+   G +P+++ YNTII G C   ++D A+ L  ++    + P+ +T+  LI 
Sbjct: 170 ALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS 229

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  GR  DAT M S M ++    +V T++ LID   K   +  A + YEEM   ++ P
Sbjct: 230 GLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDP 289

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I              R  EA +++  M+  G  PD +  S L +
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILIN 334



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  AL   G++   G EP I+T+ +++ G+C  +R+ +A+ +F+++  +  KPN + + 
Sbjct: 131 QLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYN 190

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID  CK  ++D+A  + ++M + G   +VVTY+ LI G   S     A  +   M + 
Sbjct: 191 TIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKR 250

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            I P++             GR +EA + Y+ M+R  + PD +  S L
Sbjct: 251 EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLL 297



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 81/146 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  +KLF +++ RG+  + +TY  +I GYC   +L+ A ++F ++    + PN I
Sbjct: 338 KSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNII 397

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+   C  G+++ A ++ + M + G  A++VTY+ +I G  K+  +  A+D+Y  +
Sbjct: 398 TYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSL 457

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRN 149
               + P+I    T  + LY   LR 
Sbjct: 458 NCQGLMPDIWTYTTMMLGLYKKGLRR 483



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 51/213 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL L  ++   G+ PD++TYN++I G CS  R  +A ++   +T  ++ P+
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPD 255

Query: 62  SITFTILIDAFCKEG-----------------------------------RMDDATMMFS 86
             TF  LIDA  KEG                                   R+D+A  MF 
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFG 315

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ KG   +VVTYS LI+GY KS+ ++    ++ EM +  +  N             AG
Sbjct: 316 FMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAG 375

Query: 135 RPTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
           +   A +++  M+  G+ P+     +LL  L D
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCD 408



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 12/167 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  + L+ Q+   G+  ++ T N ++  +C  ++L  A+    K+  +  +P+ +TF  L
Sbjct: 98  DVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSL 157

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++ FC+  R+ DA  MF +M+  G K NVV Y+ +IDG  KS+ + +A D+   M ++ I
Sbjct: 158 LNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGI 217

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            P++            +GR ++A ++   M +  I PD    + L D
Sbjct: 218 GPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALID 264


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 19/179 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRG------LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55
           L K   +D AL++F +L  +G      +EPD++ +NT+I G C + + ++ + L E++  
Sbjct: 326 LCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKM 385

Query: 56  VQL-KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
             + +PN++T+  LID F K G  D A  +F +M E+G + NV+T + L+DG  K   + 
Sbjct: 386 GNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVH 445

Query: 115 SAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            A + + EM    +  N A                 AMQ ++ ML +G  PD ++  +L
Sbjct: 446 RAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSL 504



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 19/158 (12%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL------TCVQLKPNSITFT 66
           +L  ++  R + P ++T+  ++   C   R+DEA+Q+F++L        V ++P+ + F 
Sbjct: 302 ELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFN 361

Query: 67  ILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            LID  CK G+ +D   +  +M +    + N VTY+CLIDG+FK+ N   A +++ +M E
Sbjct: 362 TLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNE 421

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGI 151
             + PN+             GR   A++ ++ M   G+
Sbjct: 422 EGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGL 459



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A++ F ++  +GL+ +  TY  +I  +C +N ++ A+Q FE++      P+
Sbjct: 438 LCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPD 497

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  LI   C  GRM+DA+++ SK+   G   +   Y+ LI G+ K + ++  +++  
Sbjct: 498 AVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLT 557

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           EM E  + P+              G    A ++ + M++ G+ P
Sbjct: 558 EMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRP 601



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 12/128 (9%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P+ +TYN +I G+      D A +LF ++    ++PN IT   L+D  CK GR+  A  
Sbjct: 390 RPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVE 449

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------ 131
            F++M  KG K N  TY+ LI  +    N+  A   +EEM  +  SP+            
Sbjct: 450 FFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLC 509

Query: 132 IAGRPTEA 139
           IAGR  +A
Sbjct: 510 IAGRMNDA 517



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             K  + D A +LF Q+ + G++P++IT NT++ G C   R+  AV+ F ++    LK N
Sbjct: 403 FFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGN 462

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T LI AFC    ++ A   F +ML  G   + V Y  LI G   +  M  A  V  
Sbjct: 463 AATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVS 522

Query: 122 EM----------CENNISPNIAGRPT--EAMQLYDSMLRNGIMPDGLLLSTLADY 164
           ++          C N +      +       +L   M   G+ PD +  +TL  Y
Sbjct: 523 KLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISY 577



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 15/175 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+   +L  ++ + G++PD ITYNT+I           A ++ EK+    L+P+ +
Sbjct: 545 KKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVV 604

Query: 64  TFTILIDAFCKEGRMDDATMMFSKM--LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           T+  +I A+C +  +D+   +F +M    K P  N V Y+ LID   ++ ++  A  + E
Sbjct: 605 TYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVP-PNTVIYNILIDALCRNNDVDRAISLME 663

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M    + PN                  +A +L D M+     PD + +  L ++
Sbjct: 664 DMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEW 718



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           + LKL G   DR        YN +I G+C   +L+   +L  ++    +KP++IT+  LI
Sbjct: 522 SKLKLAGFSLDRS------CYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLI 575

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-NNI 128
               K G    A+ +  KM+++G + +VVTY  +I  Y   +N+     ++ EMC  + +
Sbjct: 576 SYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKV 635

Query: 129 SPN 131
            PN
Sbjct: 636 PPN 638



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 67/127 (52%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A++ F ++   G  PD + Y ++I G C   R+++A  +  KL       +   + 
Sbjct: 478 NINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYN 537

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI  FCK+ +++    + ++M E G K + +TY+ LI    K+ +  +A  V E+M + 
Sbjct: 538 VLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKE 597

Query: 127 NISPNIA 133
            + P++ 
Sbjct: 598 GLRPSVV 604


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A KL   +  +G  P+ +TYN+++ G C   +LD+A+ L  ++   +  PN
Sbjct: 255 LCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPN 314

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  L+D F K GR  D   +   + EKG + N  +YS LI G FK    +    +++
Sbjct: 315 DITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWK 374

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E    PN              G+P EA +    M   G  P+    S+L
Sbjct: 375 EMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSL 426



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 4/150 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+++F  ++DR    D  TY+T++ G C+  R+DEAV L +++      PN + F 
Sbjct: 190 NVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFN 249

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI A CK+G +  A+ +   M  KG   N VTY+ L+ G      +  A  +   M  N
Sbjct: 250 VLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVAN 309

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
              PN     T    L D  +++G   DG+
Sbjct: 310 KCVPNDITFGT----LVDGFVKHGRALDGV 335



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            +++   L ++G   +  +Y+++I G     + +  +QL++++     KPN+I ++ LID
Sbjct: 334 GVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALID 393

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+EG+ D+A     +M  KG   N  TYS L+ GYF++ ++  A  V++EM +N+ + 
Sbjct: 394 GLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNH 453

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +              G+  EA+ ++  ML  GI  D +  S++
Sbjct: 454 HEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSM 496



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   D A +   ++ ++G  P+  TY++++ GY     + +A+ +++++T      +
Sbjct: 395 LCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHH 454

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ILI+  CK G++ +A +++ +ML +G K +VV YS +I G+  +Q ++    ++ 
Sbjct: 455 EVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFN 514

Query: 122 EM-CEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
           +M C N  + P++                + A+ + ++ML  G  PD     + L TL D
Sbjct: 515 QMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRD 574



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 16/179 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRG----LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           ++I+E   D AL+ +  + D      ++P+ +++N +I   C +  +D+AV++F  ++  
Sbjct: 145 VVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDR 204

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
               +  T++ L+   C EGR+D+A  +  +M  +G   N V ++ LI    K  ++  A
Sbjct: 205 NCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRA 264

Query: 117 FDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + + M      PN            + G+  +AM L + M+ N  +P+ +   TL D
Sbjct: 265 SKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVD 323


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A ++   L + GL P  + YNT+I GYC    L+ A   F ++    +KP+
Sbjct: 213 LCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPD 272

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  CK  R+ +A  +  +M + G    V T++ LID Y ++  ++  F V  
Sbjct: 273 HITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLS 332

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM EN + PN+             G+  EA+ + D M    ++P+  + + + D
Sbjct: 333 EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 386



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 89/163 (54%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++T+R + P+ ITYNT+I G+     L+   +L +++ C  LKPN+IT+ +L+ 
Sbjct: 82  AVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLS 141

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GRM + + +  +M  +    +  TYS L DG  ++ + K+   ++ +  +N ++ 
Sbjct: 142 GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTI 201

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                          G+ + A ++  S++  G++P  ++ +TL
Sbjct: 202 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 244



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 13/164 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDA 71
           + FG L   G  PD   +N  +    +   L EAV +  ++      P N+ ++ ++I  
Sbjct: 13  RAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAG 72

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             + GR  DA  +F +M E+    N +TY+ +IDG+ K  ++++ F + ++M  + + PN
Sbjct: 73  MWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPN 132

Query: 132 I------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                        AGR  E   L D M    ++PDG   S L D
Sbjct: 133 AITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 176



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL------------------ 49
           L+ A   FGQ+  R ++PD ITYN +I G C   R+  A  L                  
Sbjct: 254 LEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNT 313

Query: 50  --------------FEKLTCVQ---LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                         F  L+ +Q   LKPN +++  +++AFCK G++ +A  +   M  K 
Sbjct: 314 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 373

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              N   Y+ +ID Y +      AF + E+M  N ISP+I              + +EA 
Sbjct: 374 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 433

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           ++ +S+  + ++PD +  +TL
Sbjct: 434 EIINSLSNHRLIPDAVSYNTL 454



 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 70/125 (56%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  ++   G+ P I+TYN +I G C+ +++ EA ++   L+  +L P+++++  L
Sbjct: 395 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 454

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A C  G +D A  +  +M + G K+ V TY  LI G   +  +     +Y++M +NN+
Sbjct: 455 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 514

Query: 129 SPNIA 133
            P+ A
Sbjct: 515 VPSNA 519



 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 48/220 (21%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   L+A  +L  Q+   GL+P+ ITYN ++ G C   R+ E   L +++   ++ P+ 
Sbjct: 109 IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 168

Query: 63  ITFTILID-----------------------------------AFCKEGRMDDATMMFSK 87
            T++IL D                                     CK+G++  A  +   
Sbjct: 169 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 228

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGR 135
           ++  G     V Y+ LI+GY ++  ++ AF  + +M   +I P+             A R
Sbjct: 229 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 288

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            T A  L   M  NG+ P     +TL D     +G  E C
Sbjct: 289 ITNAQDLLMEMQDNGVNPTVETFNTLIDA-YGRTGQLEKC 327



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A+ +   +  + + P+   YN II  Y      D+A  L EK+    + P+ +
Sbjct: 355 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 414

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI   C + ++ +A  + + +       + V+Y+ LI       N+  A D+ + M
Sbjct: 415 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 474

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            +  I   +            AGR  E   LY  M++N ++P
Sbjct: 475 HKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVP 516



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +  +  A ++   L++  L PD ++YNT+I   C    +D+A+ L +++    +K  
Sbjct: 423 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 482

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI      GR+++   ++ KM++     +   ++ +++ Y K  N   A D+ +
Sbjct: 483 VRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRK 542

Query: 122 EMCE 125
           EM +
Sbjct: 543 EMLQ 546



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 13/136 (9%)

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANV 97
           SL R  +  + F  L     +P++  +   + A    G + +A  M  +M   G P  N 
Sbjct: 4   SLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNA 63

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-----------IAGRPTEA-MQLYDS 145
            +Y+ +I G +++     A +V++EM E  + PN           I G   EA  +L D 
Sbjct: 64  FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQ 123

Query: 146 MLRNGIMPDGLLLSTL 161
           M+ +G+ P+ +  + L
Sbjct: 124 MVCHGLKPNAITYNVL 139


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 12/179 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L  Q+ +  LEP+IIT+N ++ G+C    + +A +LFE +   ++ PN  T+ I
Sbjct: 266 VNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNI 325

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA+CK+  M+DA  ++  ML KG   +V TY+CLI G  +  +++ A +   EM   +
Sbjct: 326 LIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKH 385

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           +  ++             G   + ++L D M + G+ P  L  +T+ D   +    ++H
Sbjct: 386 LKADLITYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGNLRQH 444



 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 78/127 (61%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A+K+F ++  +G++P+++TYN++I G C+  +++EA  L +++    L+PN IT  
Sbjct: 230 NVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHN 289

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L++ FCK   +  A  +F  M ++    NV TY+ LID Y K +NM+ AF +Y  M   
Sbjct: 290 ALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGK 349

Query: 127 NISPNIA 133
            + P+++
Sbjct: 350 GVYPDVS 356



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 93/165 (56%), Gaps = 15/165 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    DA LK   ++   G+ P+ +T+N +I G+C+   +  A+++F ++    +KPN
Sbjct: 193 LVKMYKADAILK---EMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPN 249

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  C  G++++AT +  +M+    + N++T++ L++G+ K++ +K A +++E
Sbjct: 250 VVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFE 309

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPD 154
           +M +  I+PN+                 +A  LY  ML  G+ PD
Sbjct: 310 DMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPD 354



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 63/111 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +++ A  L+  +  +G+ PD+ TYN +I G C    L+ A     ++    LK + I
Sbjct: 332 KDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLI 391

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           T+ IL+D+ C +G M     +  +M +KG K + +TY+ +IDGY K  N++
Sbjct: 392 TYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGNLR 442



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 44/77 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L+ A     ++  + L+ D+ITYN ++   C+   + + ++L +++    LKP+
Sbjct: 365 LCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPS 424

Query: 62  SITFTILIDAFCKEGRM 78
            +T+  +ID + KEG +
Sbjct: 425 QLTYNTMIDGYSKEGNL 441


>gi|147742778|gb|ABQ50558.1| hypothetical protein [Brassica rapa]
          Length = 277

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 74/120 (61%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++  RG++PD ITY ++I G C  NRLDEA Q+ + +     +P+ +T+  LI+ +C
Sbjct: 1   LYNEMVPRGIDPDTITYTSLIYGLCMENRLDEANQMMDLMVSKGCEPSIVTYGTLINGYC 60

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K  R+ D   +F ++  +G  AN VTYS LI G+ ++  +  A ++++EM    +SP++ 
Sbjct: 61  KAKRVVDGMKLFREISLRGLVANTVTYSTLIQGFCEAGKLNVAKELFQEMVSRGVSPSVV 120



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 65/105 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  LD A ++   +  +G EP I+TY T+I GYC   R+ + ++LF +++   L  N
Sbjct: 24  LCMENRLDEANQMMDLMVSKGCEPSIVTYGTLINGYCKAKRVVDGMKLFREISLRGLVAN 83

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           ++T++ LI  FC+ G+++ A  +F +M+ +G   +VVTY  L+DG
Sbjct: 84  TVTYSTLIQGFCEAGKLNVAKELFQEMVSRGVSPSVVTYGILLDG 128



 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 7   HLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSIT 64
            +D A +LF  L   +G++PD+ TYN +I G C    L EA +LF+K+    +  P+  T
Sbjct: 169 RVDDAWELFSSLLPLKGVKPDVKTYNVMIGGLCKKGSLSEADKLFKKMGEEDETAPSECT 228

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           +  LI A      +  +  +  +M   G  A+  T   +ID
Sbjct: 229 YNTLIRAHLGGSGVATSVELIEEMKRCGFSADASTMKMVID 269


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 15/159 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLK 59
           L +   +D A +L   L   G  PD+ITYNT+I G C +N +D A  L +++ C+  +  
Sbjct: 186 LCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEV-CLNGEFA 244

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+ +++T +I  +CK  +M++  ++F +M+  G   N  T++ LI G+ K  +M SA  +
Sbjct: 245 PDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALAL 304

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSM 146
           YE+M      P++A            G+  +AM ++  M
Sbjct: 305 YEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKM 343



 Score = 85.5 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 8   LDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +D A  L  ++   G   PD+++Y TII GYC  ++++E   LF ++      PN+ TF 
Sbjct: 227 VDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFN 286

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  F K G M  A  ++ KML +G   +V T++ LI+GYF+   +  A D++ +M + 
Sbjct: 287 ALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDK 346

Query: 127 NISPNI 132
           NI   +
Sbjct: 347 NIGATL 352



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + +AL L+ ++  +G  PD+ T+ ++I GY  L ++ +A+ ++ K+    +     TF++
Sbjct: 298 MASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSV 357

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C   R+  A  +   + E         Y+ +IDGY KS N+  A  +  EM  N 
Sbjct: 358 LVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNR 417

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             P+            + GR  EA+ ++  ML  G  PD + ++ L
Sbjct: 418 CKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAPDEITVNNL 463



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LFG++   G  P+  T+N +I G+  L  +  A+ L+EK+      P+  TFT LI+ + 
Sbjct: 269 LFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYF 328

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
           + G++  A  M+ KM +K   A + T+S L+ G   +  +  A D+   + E++I P   
Sbjct: 329 RLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPF 388

Query: 132 ----------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      +G   EA ++   M  N   PD L  + L
Sbjct: 389 IYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTIL 428



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI++  +  A+ LF +L     +P   T N ++ G C    +DEA +L   L      P
Sbjct: 150 VLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLP 209

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDV 119
           + IT+  LI   C+   +D A  +  ++   G  A +VV+Y+ +I GY K   M+    +
Sbjct: 210 DVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLL 269

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + EM  +  +PN              G    A+ LY+ ML  G +PD    ++L
Sbjct: 270 FGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSL 323



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 4/101 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  +   L +  + P    YN +I GYC    +DEA ++  ++   + KP+ +TFTI
Sbjct: 368 LHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTI 427

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY----SCLI 104
           LI   C +GRM +A  +F KML  G   + +T     SCL+
Sbjct: 428 LIIGHCMKGRMPEAIGIFHKMLAVGCAPDEITVNNLRSCLL 468



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 13/167 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD + +L   +    +  + + YN +       N++ +AV LF +L  ++ KP + T  I
Sbjct: 122 LDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNI 181

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN- 126
           L+   C+ G +D+A  + + +   G   +V+TY+ LI G  +   +  A  + +E+C N 
Sbjct: 182 LMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNG 241

Query: 127 NISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
             +P++    T            E   L+  M+R+G  P+    + L
Sbjct: 242 EFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNAL 288



 Score = 43.9 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++D A K+  ++     +PD +T+  +I G+C   R+ EA+ +F K+  V   P+ I
Sbjct: 399 KSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAPDEI 458

Query: 64  TFTILIDAFCKEGRMDDA 81
           T   L     K G   +A
Sbjct: 459 TVNNLRSCLLKAGMPGEA 476


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++ A KL   LT +G+ PD+ TYN++I G C       A++L++++      P+
Sbjct: 381 LCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPD 440

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LID+ C  G++ +A  +  +M   G   NV+TY+ LIDG+ K++ +  A ++++
Sbjct: 441 EFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFD 500

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M    +S N       I G     R  EA QL D M+  G+ PD    ++L  Y
Sbjct: 501 QMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTY 555



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H+  AL++   +   G +PDI TYN++I G C L  +DEAV++  ++      PN
Sbjct: 311 LSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPN 370

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  +I   CKE ++++AT +   +  KG   +V TY+ LI G   S+N   A ++Y+
Sbjct: 371 TVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYK 430

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      P+              G+  EA+ L   M  +G   + +  +TL D
Sbjct: 431 EMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLID 484



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL L  ++   G   ++ITYNT+I G+C   R+ EA ++F+++    +  NS+T+  
Sbjct: 457 LQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNT 516

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK  R+++A+ +  +M+ +G + +  TY+ L+  + K+ ++K A D+ + M  + 
Sbjct: 517 LIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDG 576

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGI 151
             P+I            AGR   A +L  ++   GI
Sbjct: 577 CEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGI 612



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A ++F Q+  +G+  + +TYNT+I G C   R++EA QL +++    L+P+  
Sbjct: 488 KNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKF 547

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE-- 121
           T+  L+  FCK G +  A  +   M   G + ++VTY  LI G  K+  +++A  +    
Sbjct: 548 TYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTI 607

Query: 122 EMCENNISPNIAG----------RPTEAMQLYDSMLRNGIMPDGL 156
           +M   N++P+             R  EA++L+  M+     PD +
Sbjct: 608 QMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAV 652



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A +L  Q+   GL PD  TYN+++  +C    + +A  + + +     +P+
Sbjct: 521 LCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPD 580

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   CK GR++ AT +   +  KG       Y+ +I   F+ +  K A  ++ 
Sbjct: 581 IVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFR 640

Query: 122 EMCENNISPNI------------AGRPT-EAMQLYDSMLRNGIMPD 154
           EM E   +P+              G P  EA+     ML  G +P+
Sbjct: 641 EMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPE 686



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKP 60
            I+E +LD A+++  Q+ + G     +T N ++ G+C   R++EA++  E+++  +   P
Sbjct: 240 FIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFP 299

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  TF +L++   K G +  A  +   ML +G   ++ TY+ LI G  K   +  A  V 
Sbjct: 300 DKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVL 359

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
            +M E + SPN     T            EA +L   +   GI+PD
Sbjct: 360 NQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPD 405



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 17/152 (11%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           +  RG+ PD+ T+N +I   C  +++  A+ L E++    L P+  TFT ++  F +EG 
Sbjct: 186 MVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGN 245

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC------------- 124
           +D A  +  +M+E G     VT + L++G+ K   ++ A    EEM              
Sbjct: 246 LDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFN 305

Query: 125 --ENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
              N +S    G    A+++ D MLR G  PD
Sbjct: 306 MLVNGLSK--TGHVKHALEVMDMMLREGFDPD 335



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           KE  ++ AL+   +++ R G  PD  T+N ++ G      +  A+++ + +      P+ 
Sbjct: 277 KEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDI 336

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  LI   CK G +D+A  + ++M+E+    N VTY+ +I    K   ++ A  +   
Sbjct: 337 YTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALV 396

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +    I P++            +   T AM+LY  M   G  PD    + L D
Sbjct: 397 LTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLID 449



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 87/173 (50%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +  A+ L  ++ D GL PD  T+ TI+ G+     LD A+++ E++        
Sbjct: 205 LCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVT 264

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++T  +L++ FCKEGR+++A     +M L +G   +  T++ L++G  K+ ++K A +V 
Sbjct: 265 NVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVM 324

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M      P+I             G   EA+++ + M+     P+ +  +T+
Sbjct: 325 DMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTI 377


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +  A ++   L + GL P  + YNT+I GYC    L+ A   F ++    +KP+
Sbjct: 346 LCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPD 405

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI+  CK  R+ +A  +  +M + G    V T++ LID Y ++  ++  F V  
Sbjct: 406 HITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLS 465

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM EN + PN+             G+  EA+ + D M    ++P+  + + + D
Sbjct: 466 EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 519



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F ++T+R + P+ ITYNT+I G+     L+    L +++ C  LKPN+IT+ +L+ 
Sbjct: 215 AVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLS 274

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+ GRM + + +  +M  +    +  TYS L DG  ++ + K+   ++ +  +N ++ 
Sbjct: 275 GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTI 334

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                          G+ + A ++  S++  G++P  ++ +TL
Sbjct: 335 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 377



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 13/164 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNSITFTILIDA 71
           + FG L   G  PD   +N  +    +   L EAV +  ++       PN+ ++ ++I  
Sbjct: 146 RAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAG 205

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             + GR  DA  +F +M E+    N +TY+ +IDG+ K  ++++ F + ++M  + + PN
Sbjct: 206 MWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPN 265

Query: 132 I------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                        AGR  E   L D M    ++PDG   S L D
Sbjct: 266 AITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 309



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL------------------ 49
           L+ A   FGQ+  R ++PD ITYN +I G C   R+  A  L                  
Sbjct: 387 LEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNT 446

Query: 50  --------------FEKLTCVQ---LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
                         F  L+ +Q   LKPN +++  +++AFCK G++ +A  +   M  K 
Sbjct: 447 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKD 506

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              N   Y+ +ID Y +      AF + E+M  N ISP+I              + +EA 
Sbjct: 507 VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAE 566

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           ++ +S+  + ++PD +  +TL
Sbjct: 567 EIINSLSNHRLIPDAVSYNTL 587



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 70/125 (56%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  ++   G+ P I+TYN +I G C+ +++ EA ++   L+  +L P+++++  L
Sbjct: 528 DQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTL 587

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A C  G +D A  +  +M + G K+ V TY  LI G   +  +     +Y++M +NN+
Sbjct: 588 ISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNV 647

Query: 129 SPNIA 133
            P+ A
Sbjct: 648 VPSNA 652



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 48/220 (21%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           IK   L+A   L  Q+   GL+P+ ITYN ++ G C   R+ E   L +++   ++ P+ 
Sbjct: 242 IKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 301

Query: 63  ITFTILID-----------------------------------AFCKEGRMDDATMMFSK 87
            T++IL D                                     CK+G++  A  +   
Sbjct: 302 FTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 361

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGR 135
           ++  G     V Y+ LI+GY ++  ++ AF  + +M   +I P+             A R
Sbjct: 362 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 421

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            T A  L   M  NG+ P     +TL D     +G  E C
Sbjct: 422 ITNAQDLLMEMQDNGVNPTVETFNTLIDA-YGRTGQLEKC 460



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A+ +   +  + + P+   YN II  Y      D+A  L EK+    + P+ +
Sbjct: 488 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 547

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI   C + ++ +A  + + +       + V+Y+ LI       N+  A D+ + M
Sbjct: 548 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 607

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            +  I   +            AGR  E   LY  M++N ++P
Sbjct: 608 HKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVP 649



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 15/168 (8%)

Query: 9   DAALKLFGQLTD--RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           D AL+L   L D  R   P + + N ++    SL R  +  + F  L     +P++  + 
Sbjct: 105 DGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWN 164

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             + A    G + +A  M  +M   G P  N  +Y+ +I G +++     A +V++EM E
Sbjct: 165 KAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTE 224

Query: 126 NNISPN-----------IAGRPTEA-MQLYDSMLRNGIMPDGLLLSTL 161
             + PN           I G   EA   L D M+ +G+ P+ +  + L
Sbjct: 225 RAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVL 272



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 61/124 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  +  +  A ++   L++  L PD ++YNT+I   C    +D+A+ L +++    +K  
Sbjct: 556 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI      GR+ +   ++ KM++     +   ++ +++ Y K  N   A D+ +
Sbjct: 616 VRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRK 675

Query: 122 EMCE 125
           EM +
Sbjct: 676 EMLQ 679


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 13/177 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+F  +   GL P  +TYNT++ GYCS +R+D+A  LF ++    + P  +T+  +
Sbjct: 466 DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTI 525

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +    +  R  +A  ++  M+  G K ++ TY+ +++G  KS  +  AF +++ +C   +
Sbjct: 526 LHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGL 585

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             NI             GR  +AM L+ ++  NG++P+ +    +A+ NL   GS E
Sbjct: 586 QLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAE-NLIEEGSLE 641



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A +L  ++ D+G+ P+ + +NT+IC  C++ R+ E  +L + +  V ++P++ ++T L
Sbjct: 396 ERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPL 455

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +C  GR D+A  +F  M+  G     VTY+ L+ GY  +  +  A+ ++ EM    +
Sbjct: 456 ISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGV 515

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +P +              R +EA +LY +M+ +G   D
Sbjct: 516 TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCD 553



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 12/163 (7%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C L         + + GL PD   +N     Y     +D+A+ +F K+    L PN + +
Sbjct: 288 CALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNY 347

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             LIDA CK GR+DDA + F++M+ +G   N+V ++ L+ G       + A ++  EM +
Sbjct: 348 GALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLD 407

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
             I PN              GR  E  +L D M   G+ PD  
Sbjct: 408 QGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAF 450



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---PNSITFTILID 70
           L  ++ + G  PD ++Y+ ++ G+C+ NR +EA++L   +     +   PN +T+T +ID
Sbjct: 156 LLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVID 215

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK    D A  +F +M++ G K N  TY+CLI GY      K    + E+M    + P
Sbjct: 216 GLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKP 275

Query: 131 ---------NIAGRPTEAMQLYDSMLRNGIMPD 154
                    N     +E     D M+ NG+ PD
Sbjct: 276 DCYTYGSLLNYLCALSEMHSFLDLMVENGLSPD 308



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  LF ++  +G+ P ++TYNTI+ G     R  EA +L+  +     K +  T+ 
Sbjct: 499 RIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 558

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+++  CK   +D+A  MF  +  KG + N++T++ +I    K    + A D++  +  N
Sbjct: 559 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPAN 618

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            + PN+             G   E   L+ +M +NG  P+  +L+ L 
Sbjct: 619 GLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 666



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 44/198 (22%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT--- 64
            D A  +F Q+ D G++P+  TYN +I GY S+ +  E VQ+ EK++   LKP+  T   
Sbjct: 223 FDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGS 282

Query: 65  -----------------------------FTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                                        F I   A+ K G +D A  +F+KM + G   
Sbjct: 283 LLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSP 342

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           NVV Y  LID   K   +  A   + +M    ++PNI              +   A +L 
Sbjct: 343 NVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELV 402

Query: 144 DSMLRNGIMPDGLLLSTL 161
             ML  GI P+ +  +TL
Sbjct: 403 YEMLDQGICPNAVFFNTL 420



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L++      R   P+++TY T+I G C     D A  +F+++    +KPN+ T+  LI  
Sbjct: 192 LRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHG 251

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP- 130
           +   G+  +   M  KM  +G K +  TY  L++       M S  D+   M EN +SP 
Sbjct: 252 YLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDL---MVENGLSPD 308

Query: 131 ----NI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               NI        G   +AM +++ M ++G+ P+ +    L D
Sbjct: 309 HHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALID 352



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+F  L  +GL+ +IIT+  +I       R ++A+ LF  +    L PN +T+ +
Sbjct: 570 VDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRL 629

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           + +   +EG +++   +FS M + G   N    + L+       ++  A     ++ E N
Sbjct: 630 VAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERN 689

Query: 128 IS 129
            S
Sbjct: 690 FS 691



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 15/139 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE-----------AVQLFEKLT-- 54
           LD ALKLF +L        ++ +N I+      +R               V LF ++   
Sbjct: 30  LDDALKLFDELLIHARPASVVAFNQILNAVSRASRASGRRSSSTSESELVVSLFNRMVRE 89

Query: 55  -CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
             +++ PN+ T++ILI   C+ GR+  +   F  +L+ G + N +  + L+ G    + +
Sbjct: 90  CSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRV 149

Query: 114 KSAFDV-YEEMCENNISPN 131
             A DV  + M E   +P+
Sbjct: 150 GEAMDVLLQRMPELGCTPD 168



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    + A+ LF  +   GL P+++TY  +         L+E   LF  +      PN
Sbjct: 599 LLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPN 658

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ---NMKSAFD 118
           S     L+      G +  A    SK+ E+       T S LI  +   +   + KS  +
Sbjct: 659 SQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSLPE 718

Query: 119 VYEEMCENNISPNI 132
            Y  + E N S  I
Sbjct: 719 KYHFLNEANSSALI 732


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLKP 60
            L K   +  A +L  ++   G +P++ T+ ++I G C     + A +LF KL      KP
Sbjct: 911  LCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKP 970

Query: 61   NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            N  T+T +I  +CKE ++  A M+F +M E+G   N  TY+ LIDG+ K+ N   A+++ 
Sbjct: 971  NVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELM 1030

Query: 121  EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E M      PN              GR  EA +L ++  +N I  DG+  + L
Sbjct: 1031 ELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTIL 1083



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 8    LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            ++ A+  F ++T  GL P++I Y+++I G C    + +A +L E++     KPN  T T 
Sbjct: 882  VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 941

Query: 68   LIDAFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI   CK+G  + A  +F K++     K NV TY+ +I GY K + +  A  ++E M E 
Sbjct: 942  LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 1001

Query: 127  NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + PN             AG  ++A +L + M   G  P+    +++ D
Sbjct: 1002 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVD 1050



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 63/111 (56%)

Query: 13   KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
            KLF ++   GL P   TY ++ICGYC   ++  AV+ F+K++     P+SI++  LI   
Sbjct: 1133 KLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGL 1192

Query: 73   CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            CKE R+D+A  ++  M++KG     VT   L   Y K+++  SA  + E +
Sbjct: 1193 CKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERL 1243



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   ++ AL    ++   G +PDI  Y T+I  +C  N + ++ +LF+++  + L P   
Sbjct: 1089 KRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKE 1148

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+T +I  +C+E ++  A   F KM + G   + ++Y  LI G  K   +  A  +Y+ M
Sbjct: 1149 TYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTM 1208

Query: 124  CENNISPNIAGRPT 137
             +  +SP    R T
Sbjct: 1209 IDKGLSPCEVTRVT 1222



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 17   QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
            ++ +RG   D  T   II  +C  + ++ AV  F K+T + L PN I ++ +I   CK G
Sbjct: 856  EMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRG 915

Query: 77   RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-NNISPN---- 131
             +  A  +  +M++ G K NV T++ LI G  K    + AF ++ ++   +N  PN    
Sbjct: 916  SVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTY 975

Query: 132  ---IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I+G     + + A  L++ M   G++P+    +TL D
Sbjct: 976  TAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 1015



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K    + A KL        +E D +TY  +I   C    +++A+    K+  V  +P+
Sbjct: 1052 LCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPD 1111

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               +T LI AFC++  M D+  +F ++++ G      TY+ +I GY + + +  A   ++
Sbjct: 1112 IHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQ 1171

Query: 122  EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
            +M ++  +P+       I+G     R  EA QLYD+M+  G+ P
Sbjct: 1172 KMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSP 1215



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 13/173 (7%)

Query: 2    LIKECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K+   + A +LF +L      +P++ TY  +I GYC   +L  A  LFE++    L P
Sbjct: 946  LCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVP 1005

Query: 61   NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            N+ T+T LID  CK G    A  +   M  +G   N  TY+ ++DG  K    + AF + 
Sbjct: 1006 NTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 1065

Query: 121  EEMCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
                +N I  +                  +A+   + M + G  PD  L +TL
Sbjct: 1066 NTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTL 1118



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            KE  L  A  LF ++ ++GL P+  TY T+I G+C      +A +L E ++     PN+ 
Sbjct: 984  KEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTC 1043

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+  ++D  CK GR ++A  + +   +   +A+ VTY+ LI    K  +M  A     +M
Sbjct: 1044 TYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKM 1103

Query: 124  CENNISPNIAGRPT------------EAMQLYDSMLRNGIMP 153
             +    P+I    T            ++ +L+D +++ G+ P
Sbjct: 1104 FKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAP 1145



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            +E  +  A+K F +++D G  PD I+Y  +I G C  +RLDEA QL++ +    L P  +
Sbjct: 1159 REKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEV 1218

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEK 91
            T   L   +CK      A ++  ++ +K
Sbjct: 1219 TRVTLTYEYCKTEDFASAMVILERLNKK 1246



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ +   + ++GL       N II     +  ++ A  +F++++   + P+S T+  
Sbjct: 777 LKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 836

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +C+ G + +A     +M+E+G   +  T + +I  + +   +  A   + ++ +  
Sbjct: 837 IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 896

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +SPN+             G   +A +L + M++NG  P+
Sbjct: 897 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPN 935



 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L KE  LD A +L+  + D+GL P  +T  T+   YC       A+ + E+L     K  
Sbjct: 1192 LCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERL---NKKLW 1248

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              T   LI   C E ++  A + F K+L+K    + VT +       +S       D+ E
Sbjct: 1249 IRTVHTLIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAAFNTACIESNKYALVSDLSE 1308

Query: 122  EM 123
             +
Sbjct: 1309 RI 1310


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 50/206 (24%)

Query: 6   CHLDAALKLFG---QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C   A  + FG    + D GL PD  TY  +I G C   R +EA  L ++++C +LKPN 
Sbjct: 290 CRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNV 349

Query: 63  ITFTILIDAF-----------------------------------CKEGRMDDATMMFSK 87
           + +  LID F                                   CK G+MD A+++  +
Sbjct: 350 VVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQ 409

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGR 135
           M+    + + +TY+ +I+G+F+  + K AF +  EM    ISPN+            +G 
Sbjct: 410 MVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGE 469

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTL 161
           P +A  L + M   G+ P+  + + L
Sbjct: 470 PEKASDLLEEMTTKGLKPNAFVYAPL 495



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 13/177 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  L  ++T +GL+P+   Y  +I GYC    +  A ++F+K+T V + P+   +  L
Sbjct: 471 EKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSL 530

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    K GR++++T  F++M E+G   N  TYS LI GY K+ +++SA  + + M +  +
Sbjct: 531 IFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL 590

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            PN             +    +    + SML  G+M D  +   L  +NL SSG+ E
Sbjct: 591 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI-HNLSSSGNME 646



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  L  Q+      PD ITYN II G+   +   +A +L  ++    + PN
Sbjct: 394 LCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN 453

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I+I   C+ G  + A+ +  +M  KG K N   Y+ LI GY +  N+  A ++++
Sbjct: 454 VYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD 513

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD-----GLLLSTLADY 164
           +M + N+ P++             GR  E+ + +  M   G++P+     GL+   L + 
Sbjct: 514 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNG 573

Query: 165 NLQSS 169
           +L+S+
Sbjct: 574 DLESA 578



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++AA ++   +   G  PD+  Y+++I G C     ++A  + ++++   + PN + + 
Sbjct: 644 NMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYN 703

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  CK G +  A  +F+ +L KG   N VTY+ LIDG  K  ++ +AF +Y EM   
Sbjct: 704 ALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 763

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNG 150
            I+P+             AG   +AM L + M   G
Sbjct: 764 GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG 799



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 18/179 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A K+  ++ +RG   + +TYN +I G C    ++EA    + +    L P+  T+  
Sbjct: 260 FDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGA 319

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CK  R ++A  +  +M     K NVV Y+ LIDG+ +  N   AF + +EM    
Sbjct: 320 LINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAG 379

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
           + PN              G+   A  L   M+R+   PD +       YNL   G   H
Sbjct: 380 VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTI------TYNLIIEGHFRH 432



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++  A ++F ++T   + PD+  YN++I G   + R++E+ + F ++    L PN  
Sbjct: 501 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 560

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI  + K G ++ A  +  +ML+ G K N V Y  L++ YFKS +++     ++ M
Sbjct: 561 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 620

Query: 124 CENNI------------SPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +            + + +G    A ++   + +NG +PD  + S+L
Sbjct: 621 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSL 670



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 11/171 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A  +  +++ +G++P+I+ YN +I G C    +  A  +F  +    L PN
Sbjct: 674 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 733

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LID  CK G + +A  ++++ML  G   +   YS L  G   + +++ A  + E
Sbjct: 734 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 793

Query: 122 EM---------CENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM           NN+       G+  E ++L   ++  G++P+ L +  +
Sbjct: 794 EMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENI 844



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ + K F Q+ +RGL P+  TY+ +I GY     L+ A QL +++    LKPN
Sbjct: 534 LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 593

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK------------------------------ 91
            + +  L++++ K   ++  +  F  ML++                              
Sbjct: 594 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 653

Query: 92  -----GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
                G   +V  YS LI G  K+ + + AF + +EM +  + PNI            +G
Sbjct: 654 GIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSG 713

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + A  +++S+L  G++P+ +  ++L D
Sbjct: 714 DISYARNVFNSILAKGLVPNCVTYTSLID 742



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 12/159 (7%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F  + D+G+  D   Y  +I    S   ++ A ++   +      P+   ++ LI   CK
Sbjct: 617 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCK 676

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
               + A  +  +M +KG   N+V Y+ LIDG  KS ++  A +V+  +    + PN   
Sbjct: 677 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 736

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      G  + A  LY+ ML  GI PD  + S L
Sbjct: 737 YTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 775



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A ++   + DRG+ P I   N ++      + +    ++ E +    + P+  
Sbjct: 186 KSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVY 245

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ LI+A+CK    D A  +  +M E+G   N VTY+ LI G  +S  ++ AF   ++M
Sbjct: 246 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 305

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + P+       I G     R  EA  L D M    + P+ ++ + L D  ++   +
Sbjct: 306 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 365

Query: 172 QE 173
            E
Sbjct: 366 DE 367



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +   LKL   +  RGL P+ +T   II G     +L E   +F +L     +  + 
Sbjct: 815 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 874

Query: 64  TFTIL------------------IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            F+ L                  I   CKEG +D A M+   ++ K       +Y  ++D
Sbjct: 875 HFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVD 934

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPN 131
              +   +  A ++ +EM +  I P+
Sbjct: 935 NLCRKGKLSEALNLLKEMDKRGICPS 960



 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/96 (21%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+ L  ++  RG    I ++N ++ G+C   ++ E ++L   +    L PN++T   
Sbjct: 785 LEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIEN 843

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
           +I    + G++ +   +F ++ +K  ++    +S L
Sbjct: 844 IISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL 879


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  +   +  + + P+++TY+T+I GY  L   +EA+ L+  +    ++P+ +++ 
Sbjct: 356 QMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYN 415

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K GR DDA +    M   G KA+VVTY+ LID Y K    K A  ++++M   
Sbjct: 416 TLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGE 475

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + PN+            AG   +   ++    R G+ PD +L S+L D
Sbjct: 476 GLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLID 524



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+ L+  + + G+ PD ++YNT+I  Y  L R D+A+   + +  V LK + +T+  
Sbjct: 392 FEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNA 451

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDA+ K+G+  DA  +F KM  +G   NV+TYS LID Y K+   +   +V+ E     
Sbjct: 452 LIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAG 511

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P++             G   +A+ L   M + GI P+ +  ++L D
Sbjct: 512 LKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLID 559



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 15/183 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL-DEAVQLFEKLTCVQLKPNSITFT 66
           L  AL +F ++   G+EPD IT+N++I   CS   L +++ ++F ++    ++ +  TF 
Sbjct: 287 LKQALDIFDEMQKEGVEPDRITFNSLI-AVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFN 345

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LIDA CK G+M+ A  + + M  K    NVVTYS +IDGY K    + A  +Y +M E+
Sbjct: 346 TLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKES 405

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD-YNLQSSGSQE 173
            + P+              GR  +A+     M R G+  D +  + L D Y  Q      
Sbjct: 406 GVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDA 465

Query: 174 HCI 176
            C+
Sbjct: 466 ACL 468



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 1/99 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DAA  LF ++   GL P+++TY+ +I  Y       +   +F +     LKP+ + ++ L
Sbjct: 464 DAAC-LFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSL 522

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
           ID+ CK G ++DA ++  +M + G + N+VTY+ LID Y
Sbjct: 523 IDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAY 561



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 50/205 (24%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL +F +    G   ++  Y+ ++  Y    R  EA+++F+ +     KPN IT+  
Sbjct: 216 VEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNT 275

Query: 68  LIDAFCKEGRMD-------------------------------------DATMMFSKMLE 90
           +IDA C +G +D                                     D+  +F++M  
Sbjct: 276 IIDA-CGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQR 334

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------------E 138
           +G + ++ T++ LID   K   M+ A  +   M   NISPN+    T            E
Sbjct: 335 RGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEE 394

Query: 139 AMQLYDSMLRNGIMPDGLLLSTLAD 163
           A+ LY  M  +G+ PD +  +TL D
Sbjct: 395 AISLYHDMKESGVRPDRVSYNTLID 419



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 40  LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           L +++ A+ +F +        N   ++ ++ A+ + GR  +A  +F  M + G K N++T
Sbjct: 213 LGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLIT 272

Query: 100 YSCLIDGYFKSQ-NMKSAFDVYEEMCENNISPN-------IA-----GRPTEAMQLYDSM 146
           Y+ +ID   K   ++K A D+++EM +  + P+       IA     G   ++ +++  M
Sbjct: 273 YNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEM 332

Query: 147 LRNGIMPDGLLLSTLAD 163
            R GI  D    +TL D
Sbjct: 333 QRRGIEQDIFTFNTLID 349



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 42/158 (26%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H D +  +F +    GL+PD++ Y+++I   C    +++AV L +++T   ++PN +T+ 
Sbjct: 497 HQDVS-NVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYN 555

Query: 67  ILIDAFCKEGRMDD-----------------------------------------ATMMF 85
            LIDA+ + G+ D                                          A  +F
Sbjct: 556 SLIDAYGRYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVLAAVSVF 615

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +M + G K NVVT+S +++   +  +++ A  + E+M
Sbjct: 616 HEMQQFGLKPNVVTFSAILNACSRCASLQEASVLLEQM 653



 Score = 45.8 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +I+I    + G+++ A  +F++  + G   NV  YS ++  Y +S   + A  V++ M +
Sbjct: 204 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 263

Query: 126 NNISPNIAGRPT-------------EAMQLYDSMLRNGIMPDGLLLSTL 161
               PN+    T             +A+ ++D M + G+ PD +  ++L
Sbjct: 264 AGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSL 312


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 23/191 (12%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I E  +D ALKL  ++  RGLEPD  TYN I  G C   ++D A +    L     KP+ 
Sbjct: 126 ILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDV 185

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           IT+ IL+ A   +G+ D+     S++  +G + NVVTYS LI    +   ++ + ++ + 
Sbjct: 186 ITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKV 245

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN----- 165
           M E  ++P+              G+   A++  D M+ +G +PD      + +YN     
Sbjct: 246 MKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPD------IVNYNTIMAA 299

Query: 166 LQSSGSQEHCI 176
           L  +G+ +H +
Sbjct: 300 LCKNGNGDHAV 310



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A ++ G L   G +PD+  YN +I G+C  NR++ A  + +++      P+ +T  
Sbjct: 25  NIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHN 83

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           I+I  FC +G++D A  +F ++L+    K  ++TY+ LI+ Y     +  A  + +EM  
Sbjct: 84  IMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLS 143

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             + P+              G+   A +   ++   G  PD
Sbjct: 144 RGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  LD A++    +   G  PDI+ YNTI+   C     D AV++F KL  V   PN  
Sbjct: 267 REGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVS 326

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  ++ A    G    A  M S+ML KG   +V+TY+ LI    +   +  A  +  +M
Sbjct: 327 SYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADM 386

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
                 PNI            A R  +A+++  +M+ NG  P+
Sbjct: 387 LSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPN 429



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  + D A+++FG+L + G  P++ +YNT++    S      A+ +  ++    + P+
Sbjct: 300 LCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPD 359

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   C++G +D+A  + + ML    + N+V+Y  ++ G  K+  +  A +V  
Sbjct: 360 VITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLA 419

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSM-LRNGIMPD 154
            M EN   PN             +G  T+AM+L +S+ + N I  D
Sbjct: 420 AMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMNAISED 465



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +  Q+  +G++PD+ITYN++I   C    +DEA+ L   +   + +PN +++  ++ 
Sbjct: 344 ALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLL 403

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CENNIS 129
             CK  R+DDA  + + M+E G + N  TY+ LI+G   S +   A ++   +   N IS
Sbjct: 404 GLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMNAIS 463

Query: 130 PNIAGRPTEAMQLYD 144
            +   R  +   L D
Sbjct: 464 EDSFKRLNKTFPLLD 478



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 7/133 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQLK 59
           K   +++A  +  ++  +G  PD++T+N +I  +C   ++D A+++FE+L     C   K
Sbjct: 56  KANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNC---K 112

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P  IT+TILI+A+  EG +D+A  +  +ML +G + +  TY+ +  G  K   +  AF+ 
Sbjct: 113 PTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEF 172

Query: 120 YEEMCENNISPNI 132
              +      P++
Sbjct: 173 VRTLNSRGCKPDV 185



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+ +   D   K   ++  RG EP+++TY+ +I   C   +++E+V L + +    L P+
Sbjct: 195 LLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPD 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  LI AFC+EG++D A      M+  G   ++V Y+ ++    K+ N   A +++ 
Sbjct: 255 AYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFG 314

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++ E    PN+            +G    A+ +   ML  GI PD +  ++L
Sbjct: 315 KLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSL 366



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 7   HLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            +D ALK+F +L  D   +P +ITY  +I  Y     +DEA++L +++    L+P++ T+
Sbjct: 94  KIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTY 153

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            ++    CKEG++D A      +  +G K +V+TY+ L+                 E+  
Sbjct: 154 NVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFS 213

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
               PN+             G+  E++ L   M   G+ PD 
Sbjct: 214 RGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDA 255



 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 68/136 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +    L  RG +PD+ITYN ++    +  + DE  +   ++     +PN
Sbjct: 160 LCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPN 219

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ILI + C++G+++++  +   M EKG   +   Y  LI  + +   +  A +  +
Sbjct: 220 VVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLD 279

Query: 122 EMCENNISPNIAGRPT 137
            M  +   P+I    T
Sbjct: 280 CMICDGFLPDIVNYNT 295



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +PD+I    +I G+ +   +D+A ++   L     KP+   +  +I  FCK  R++ A  
Sbjct: 7   QPDVILCTKLIKGFFNSRNIDKATRVMGILE-KHGKPDVFAYNAVISGFCKANRIESAKT 65

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-ENNISPN----------- 131
           +  +M  KG   +VVT++ +I  +     +  A  V+EE+  +NN  P            
Sbjct: 66  VLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAY 125

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPD 154
            + G   EA++L D ML  G+ PD
Sbjct: 126 ILEGGIDEALKLLDEMLSRGLEPD 149


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 13/175 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LDAALK+  ++   G+ PD++TY T++  YC+   L  A +LF+ +      P+   +T+
Sbjct: 221 LDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKLFDDIIAGGRVPDVTMYTV 280

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +C+ G++ DA  +  +M   G + N VTYS +I+   K      A ++  EM    
Sbjct: 281 LIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCKEGKSAEACNLMREMLGAG 340

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            +P+              G+  EA Q++  M++  + PD  + +TL  Y L  SG
Sbjct: 341 HTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNTITNTLI-YWLCKSG 394



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 63/104 (60%), Gaps = 1/104 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A KLF +L ++G +P ++TYN++I G C    L EA ++++ +   + +PN
Sbjct: 390 LCKSGMVREARKLFDEL-EKGYKPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYEPN 448

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           ++T+  LI  FCK G+ D+   +F++M+ KG   + V Y  L+D
Sbjct: 449 AMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVD 492



 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + PD+++ N ++ G   +  LD A+++ +++    + P+ +T+T ++ A+C +  +  A 
Sbjct: 201 ITPDLVSCNILLKGLVGVRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQ 260

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +F  ++  G   +V  Y+ LIDGY ++  ++ A  + +EM    + PN           
Sbjct: 261 KLFDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEAC 320

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
              G+  EA  L   ML  G  PD  L + + D   Q   ++E
Sbjct: 321 CKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEE 363



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE     A  L  ++   G  PD      ++   C   + +EA Q++  +    + P++ 
Sbjct: 322 KEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNT 381

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
               LI   CK G + +A  +F + LEKG K +++TY+ LI G  ++  ++ A  V+++M
Sbjct: 382 ITNTLIYWLCKSGMVREARKLFDE-LEKGYKPSLLTYNSLISGLCENGELQEAGKVWDDM 440

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E    PN              G+P E   ++  M+  G  P  +L   L D
Sbjct: 441 VERRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVD 492



 Score = 45.1 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 38/71 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A K++  + +R  EP+ +TY  +I G+C + + DE   +F ++      P+
Sbjct: 424 LCENGELQEAGKVWDDMVERRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPS 483

Query: 62  SITFTILIDAF 72
            + + +L+D+ 
Sbjct: 484 KVLYQVLVDSL 494



 Score = 39.7 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 54  TCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
           T + + P+ ++  IL+        +D A  +  +M   G   +VVTY+ ++  Y   +++
Sbjct: 197 TKLYITPDLVSCNILLKGLVGVRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDL 256

Query: 114 KSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           K A  +++++      P++             G+  +A ++ D M   G+ P+ +  S +
Sbjct: 257 KGAQKLFDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVV 316

Query: 162 ADYNLQSSGSQEHC 175
            +   +   S E C
Sbjct: 317 IEACCKEGKSAEAC 330


>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 706

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 14/172 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PDI TYN +I  +    ++ EA+++FE+L     KP+ I++  LI+   
Sbjct: 306 LYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLG 365

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A + F +M EKG   +VVTYS LI+ + K+  ++ A  +++EM      PNI 
Sbjct: 366 KNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIV 425

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      +GR  EA+ LY  + + G+ PD +  S L    LQS   ++
Sbjct: 426 TYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYSVLE--RLQSGSHRK 475



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 71/121 (58%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+K+F +L +   +PDII+YN++I        LDEA   F ++    L P+ +T++ LI+
Sbjct: 338 AIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIE 397

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F K  +++ A  +F +ML +G   N+VTY+ L+D   +S     A D+Y ++ +  ++P
Sbjct: 398 CFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTP 457

Query: 131 N 131
           +
Sbjct: 458 D 458



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 68/129 (52%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++ C  D   +++ ++  +G   DI  +N ++       ++D+A ++FE +     +P+ 
Sbjct: 53  LRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDE 112

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+TI+I    + G++D++  +F +ML KG   N++ Y+ +I     S+ +     ++ +
Sbjct: 113 YTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSK 172

Query: 123 MCENNISPN 131
           M E N  PN
Sbjct: 173 MMEKNCRPN 181



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 62/102 (60%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A   F ++ ++GL PD++TY+T+I  +   ++++ A +LF+++      PN
Sbjct: 364 LGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPN 423

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + GR  +A  +++K+ ++G   + +TYS L
Sbjct: 424 IVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYSVL 465



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A K+F  +  +  EPD  TY  +I     + +LDE++ LFE++      PN
Sbjct: 87  LAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPN 146

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            I +  +I A      +D   ++FSKM+EK  + N  TYS ++
Sbjct: 147 LIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVIL 189



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 23/170 (13%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD +L LF ++ ++G  P++I YNT+I    +   +D+ + LF K+     +PN  T+++
Sbjct: 128 LDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSV 187

Query: 68  LIDAFCKEG---RMDDATMMFSKMLEKGPKANVV-------------TYSCLIDGYFKSQ 111
           ++     EG   ++D    +  K + +   A +V                C +  Y    
Sbjct: 188 ILTLLAAEGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRG 247

Query: 112 NMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  +   + E +C        AG+  EA+ L   +   GI  D ++ +T+
Sbjct: 248 DRDACLSMLESLCN-------AGKTVEAIDLLGKIHEKGINTDTIMYNTV 290



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 15/152 (9%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+   I T N +I  +     L+  + L EK     LK N  T+  L+ A+ +    D+ 
Sbjct: 5   GVRGTISTVNILIGFFGDGEDLERCIGLIEKW---DLKMNGYTYKCLVQAYLRSCDSDNG 61

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---------- 131
             ++ +M  KG   ++  ++ L+D   K Q +  AF V+E+M + +  P+          
Sbjct: 62  FRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRM 121

Query: 132 --IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G+  E++ L++ ML  G  P+ +  +T+
Sbjct: 122 TGRIGKLDESLALFEEMLNKGCSPNLIAYNTM 153



 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 47/165 (28%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L G++ ++G+  D I YNT+   + +L RL +   L++                   
Sbjct: 268 AIDLLGKIHEKGINTDTIMYNTV---FTALGRLKQISHLYD------------------- 305

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                        ++ KM   GP  ++ TY+ LI  + ++  +  A  ++EE+  ++  P
Sbjct: 306 -------------LYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKP 352

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I             G   EA   +  M   G+ PD +  STL +
Sbjct: 353 DIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIE 397



 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/191 (18%), Positives = 80/191 (41%), Gaps = 44/191 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYN---TIICGYCSLNRLDEAVQLFEKL----------- 53
           +D  + LF ++ ++   P+  TY+   T++     L++LD+ V+L  K            
Sbjct: 163 VDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRSIYAYLVR 222

Query: 54  TCVQLKPNSITFTI------------------LIDAFCKEGRMDDATMMFSKMLEKGPKA 95
           T  +L   S    +                  ++++ C  G+  +A  +  K+ EKG   
Sbjct: 223 TLNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHEKGINT 282

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           + + Y+ +     + + +   +D+YE+M  +   P+I            AG+  EA++++
Sbjct: 283 DTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIF 342

Query: 144 DSMLRNGIMPD 154
           + +  +   PD
Sbjct: 343 EELENSDCKPD 353



 Score = 39.3 bits (90), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TY  ++  Y      D   +++ ++       +   F +L+DA  K+ ++D A  +F  M
Sbjct: 44  TYKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDM 103

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLR 148
            +K  + +  TY+ +I    +   +  +  ++EEM     SPN+    T    L +S + 
Sbjct: 104 KKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMV 163

Query: 149 NGIMPDGLLLSTLADYN 165
           +  +   LL S + + N
Sbjct: 164 DKTI---LLFSKMMEKN 177


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL +FG+++ +G +PDI T+N++I G C ++ +++A+ L+  +    +  N
Sbjct: 462 LCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIAN 521

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+TF  LI AF + G + +A  + + ML +G   + +TY+ LI    K+  ++    ++E
Sbjct: 522 SVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFE 581

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM    ++P+I            AG+   A++    M+  G  PD
Sbjct: 582 EMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPD 626



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +A   ++ ++ + G  PD+ T++T++ G C       A++L   +     KPN  T+TIL
Sbjct: 364 EATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTIL 423

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID FCK+G++++A ++  +ML KG   N V Y+ LI    K   +  A D++ EM     
Sbjct: 424 IDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGC 483

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            P+I                 +A+ LY  M+  G++ + +  +TL    L+    QE
Sbjct: 484 KPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQE 540



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 28/163 (17%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D ALKL  ++   G  PD+ T+NT+I G+C LNR+ E  +L +++      PN
Sbjct: 255 LSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPN 314

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+   CK  R+D+A  + SK+    P  NVV ++ L++G+ ++           
Sbjct: 315 DMTYGYLMHGLCKTCRIDEAQALLSKV----PGPNVVHFNTLVNGFVRN----------- 359

Query: 122 EMCENNISPNIAGRPTEAMQ-LYDSMLRNGIMPDGLLLSTLAD 163
                       GR  EA   +YD M+ NG +PD    STL +
Sbjct: 360 ------------GRLNEATAFVYDKMINNGYVPDVFTFSTLVN 390



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 63/113 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+    +  RG  PDI+TYN++I G C   R+ EA+ LFEKL    ++P+SIT+  LI 
Sbjct: 611 ALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLIC 670

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             C+EG  DDA  +  + +E G   N VT++ L+  + K  N +     Y + 
Sbjct: 671 WLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSEGQTITYAQF 723



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++   +  ALKL   +  RG   D ITYN +I   C    +++ + LFE++    L P+
Sbjct: 532 FLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPS 591

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT  ILI+ FC  G++ +A      M+ +G   ++VTY+ LI+G  K   ++ A +++E
Sbjct: 592 IITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFE 651

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           ++    I P+              G   +A  L    + NG +P+ +  + L  YN    
Sbjct: 652 KLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILV-YNFGKQ 710

Query: 170 GSQE 173
            + E
Sbjct: 711 SNSE 714



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+    +AL+L   +  +G +P++ TY  +I G+C   +L+EA  +  ++       N
Sbjct: 392 LCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLN 451

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  LI A CK G++ +A  MF +M  KG K ++ T++ LI G  +   M+ A  +Y 
Sbjct: 452 TVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYR 511

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNG 150
           +M    +  N              G   EA++L + ML  G
Sbjct: 512 DMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRG 552



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL LF +L   G++PD ITYNT+IC  C     D+A  L  +       PN
Sbjct: 637 LCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPN 696

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM 88
            +T+ IL+  F K+   +  T+ +++ 
Sbjct: 697 DVTWNILVYNFGKQSNSEGQTITYAQF 723



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 12/143 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           EP   +YN ++      N    A  +F  +    + PN  TF +++ A C    +D+A +
Sbjct: 172 EPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACL 231

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +   M + G   N + Y  LID   K   +  A  + EEM      P++           
Sbjct: 232 LLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFC 291

Query: 133 -AGRPTEAMQLYDSMLRNGIMPD 154
              R  E  +L D M+  G  P+
Sbjct: 292 RLNRVLEGAKLVDRMILKGFTPN 314


>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 755

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F ++ + GL PD   Y T+I GYC+L R D+A Q F  L      P+ IT+T+LI 
Sbjct: 459 ASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITYTLLIG 518

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K G + DA  +F  M  +G   +VVTY+ L+ GY K+  +   F++ +EM    ISP
Sbjct: 519 ACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISP 578

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLS 159
           ++A            G   EA ++   ++R G +P  L  +
Sbjct: 579 DVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFT 619



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +   GL PD++TYN ++ GY   ++L++  +L +++    + P+  T+ ILI 
Sbjct: 529 AESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIH 588

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +    G +D+A  + S+++ +G   + + ++ +I G  K  + + AF ++  M +  + P
Sbjct: 589 SMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKP 648

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            A R  +A+ L+D +L  G+ PD +L +TL
Sbjct: 649 DVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTL 691



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++   ++D A ++  +L  RG  P  + +  +I G        EA  L+  +  +++KP+
Sbjct: 590 MVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPD 649

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + L+  +C+  RM+ A ++F K+L+ G K +VV Y+ LI GY    +++ A ++  
Sbjct: 650 VVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 709

Query: 122 EMCENNISPN 131
            M +  + PN
Sbjct: 710 LMVQRGMLPN 719



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+   +L  ++   G+ PD+ TYN +I        +DEA ++  +L      P+++
Sbjct: 557 KTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSAL 616

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            FT +I    K G   +A +++  M +   K +VVT S L+ GY ++Q M+ A  +++++
Sbjct: 617 AFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKL 676

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  + P++             G   +A +L   M++ G++P+
Sbjct: 677 LDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPN 719



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 60/114 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A  L+  + D  ++PD++T + ++ GYC   R+++A+ LF+KL    LKP+
Sbjct: 625 LSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPD 684

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
            + +  LI  +C  G ++ A  +   M+++G   N  T+  L+ G    + M S
Sbjct: 685 VVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVVGLEGKRFMNS 738



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D   +L   + D G+ PDI+ +   I   C    L EA  +  KL    +  +S++ +
Sbjct: 353 YFDKGWELLMGMKDYGIRPDIVAFTVFIDKLCKAGFLREATSVLFKLKLFGISQDSVSVS 412

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID FCK G+ ++A  +         + N+  YS  +     + +M  A  +++E+ E 
Sbjct: 413 SVIDGFCKVGKPEEAIKLIHSF---RLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFEL 469

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + P+              GR  +A Q + ++L++G  P  L+  TL
Sbjct: 470 GLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALLKSG-NPPSLITYTL 515



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 15/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +++   L+ A +    +  RG   +    +  I  YCS    D+  +L   +    ++P+
Sbjct: 313 ILRAHGLELAREFVEHMLSRGRHLNAALLSLFIRKYCSDGYFDKGWELLMGMKDYGIRPD 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + FT+ ID  CK G + +AT +  K+   G   + V+ S +IDG+ K    + A  +  
Sbjct: 373 IVAFTVFIDKLCKAGFLREATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIH 432

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 + PNI             G    A  ++  +   G++PD    +T+ D
Sbjct: 433 SF---RLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMID 483


>gi|356520039|ref|XP_003528673.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 585

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 74/124 (59%), Gaps = 2/124 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL +F ++ ++G+   +ITYN    G C   +  EAV++  ++  V L PN +T+ I
Sbjct: 322 VDKALNVFAEMREKGIAYGVITYNX--GGLCRGKKFGEAVKIVHQVNKVGLSPNIVTYNI 379

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC  G++D A  +F+++   G    +VTY+ LI GY K +N+  A D+ +EM E  
Sbjct: 380 LINGFCDVGKIDTAVRLFNQLKSNGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 439

Query: 128 ISPN 131
           I P+
Sbjct: 440 IPPS 443



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 13/159 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++LF QL   GL P ++TYNT+I GY  +  L  A+ L +++    + P+ +T+ I
Sbjct: 390 IDTAVRLFNQLKSNGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIPPSKVTYXI 449

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LIDAF +         M S ++EK    + V +S LI G   + NMK A  + + + E +
Sbjct: 450 LIDAFARLNYTKKTCEMHS-LMEKSGLVSDVXHSVLIHGLCMNGNMKEASKLLKSLGELH 508

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + PN              G    A++L++ M+ + ++P+
Sbjct: 509 LEPNSVIYNTMIHGYCKEGSSYRALRLFNEMVHSRMVPN 547



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+K+  Q+   GL P+I+TYN +I G+C + ++D AV+LF +L    L P  +T+  LI 
Sbjct: 358 AVKIVHQVNKVGLSPNIVTYNILINGFCDVGKIDTAVRLFNQLKSNGLSPTLVTYNTLIA 417

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K   +  A  +  +M E+    + VTY  LID + +    K   +++  M ++ +  
Sbjct: 418 GYSKVENLAGALDLVKEMEERCIPPSKVTYXILIDAFARLNYTKKTCEMHSLMEKSGLVS 477

Query: 131 NIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            G   EA +L  S+    + P+ ++ +T+
Sbjct: 478 DVXHSVLIHGLCMNGNMKEASKLLKSLGELHLEPNSVIYNTM 519



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 16/173 (9%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L    +L   L + G   +++ Y T+I G C    +  A +LF  +  + L  N  +  +
Sbjct: 217 LMKGFRLLAMLEEFGFSLNVVIYTTLIYGCCKSGDVRLAKKLFCTMDRLGLVANHHSCGV 276

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++ F K+G   +   M+  M   G   N   Y+C+I  Y  ++ +  A +V+ EM E  
Sbjct: 277 LMNGFFKQGLQREGFXMYENMKPSGIVPNAYAYNCVISEYCNARMVDKALNVFAEMREKG 336

Query: 128 ISPNI----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           I+  +            +  EA+++   + + G+ P+      +  YN+  +G
Sbjct: 337 IAYGVITYNXGGLCRGKKFGEAVKIVHQVNKVGLSPN------IVTYNILING 383



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI+    D A  +F +   R +  D  ++  +I G C    L +  +L   L       
Sbjct: 176 LLIRSNCFDIAWWVFNEF-KRKVVMDAYSFGIMIKGRCEAGDLMKGFRLLAMLEEFGFSL 234

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + +T LI   CK G +  A  +F  M   G  AN  +   L++G+FK    +  F +Y
Sbjct: 235 NVVIYTTLIYGCCKSGDVRLAKKLFCTMDRLGLVANHHSCGVLMNGFFKQGLQREGFXMY 294

Query: 121 EEMCENNISPN 131
           E M  + I PN
Sbjct: 295 ENMKPSGIVPN 305



 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A KL   L +  LEP+ + YNT+I GYC       A++LF ++   ++ PN  +F  
Sbjct: 494 MKEASKLLKSLGELHLEPNSVIYNTMIHGYCKEGSSYRALRLFNEMVHSRMVPNVASFCS 553

Query: 68  LIDAFCKEGRMDDATMMFSKML 89
            I   C++ +  +A ++  + L
Sbjct: 554 TIGLLCRDEKWQEAELLLGQFL 575



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C + + ++  G ++D       + ++ +I G C    + EA +L + L  + L+PNS+
Sbjct: 462 KTCEMHSLMEKSGLVSD-------VXHSVLIHGLCMNGNMKEASKLLKSLGELHLEPNSV 514

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
            +  +I  +CKEG    A  +F++M+      NV ++
Sbjct: 515 IYNTMIHGYCKEGSSYRALRLFNEMVHSRMVPNVASF 551


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL+ + ++ + G  P + TY  ++C  C   R  EA+ LF ++     +PN  T+T+
Sbjct: 271 LHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTV 330

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CKEGRMD+A  M ++M+EKG   +VV ++ LI  Y K   M+ A  V   M    
Sbjct: 331 LIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKK 390

Query: 128 ISPNI-----------AGRPTE-AMQLYDSMLRNGIMPDGLLLSTL 161
           + PN+            G+  + AM L + M+ + + PD +  +TL
Sbjct: 391 VCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTL 436



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 18/171 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  ++ +  L PD++TYNT+I G C +  +D A +LF  +      P+  TF  
Sbjct: 411 MDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNA 470

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY-----EE 122
            +   C+ GR+ +A  +   + EK  KAN   Y+ LIDGY K+  ++ A  ++     EE
Sbjct: 471 FMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEE 530

Query: 123 MCENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              N+I+ N+        G+  +AM L + M +  + P      TL  YN+
Sbjct: 531 CLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKP------TLHTYNI 575



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 13/185 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D ALK+  ++ ++G+ P ++ +N +I  YC    +++AV +   +   ++ PN
Sbjct: 335 LCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI  FC+   MD A  + +KM+E     +VVTY+ LI G  +   + SA  ++ 
Sbjct: 395 VRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFR 454

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M  +  SP+              GR  EA Q+ +S+    +  +    + L D     +
Sbjct: 455 LMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALID-GYCKA 513

Query: 170 GSQEH 174
           G  EH
Sbjct: 514 GKIEH 518



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           + ++Y  +I G C   +L EA++ + ++      P   T+T+L+ A C+ GR  +A  +F
Sbjct: 254 NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLF 313

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDS 145
            +M E+G + NV TY+ LID   K   M  A  +  EM E  ++P++   P  A  L  S
Sbjct: 314 GEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVV--PFNA--LIGS 369

Query: 146 MLRNGIMPDGL 156
             + G+M D +
Sbjct: 370 YCKRGMMEDAV 380



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 16/142 (11%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD+ TY +++ GYC  + ++ A  +F    CV  + N++++T LI   C+ G++ +A   
Sbjct: 222 PDLFTYTSLVLGYCRNDDVERACGVF----CVMPRRNAVSYTNLIHGLCEAGKLHEALEF 277

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           +++M E G    V TY+ L+    +S     A  ++ EM E    PN+            
Sbjct: 278 WARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCK 337

Query: 133 AGRPTEAMQLYDSMLRNGIMPD 154
            GR  EA+++ + M+  G+ P 
Sbjct: 338 EGRMDEALKMLNEMVEKGVAPS 359



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++   L ++ ++ +   Y  +I GYC   +++ A  LF+++   +  PNSITF ++ID
Sbjct: 484 AHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMID 543

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              KEG++ DA ++   M +   K  + TY+ L++   K  +   A ++   +  +   P
Sbjct: 544 GLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQP 603

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             GR  EA ++   +   G++ D  + + L +
Sbjct: 604 NVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLIN 648



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%)

Query: 8   LDAALKLFGQ-LTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +D  + L+ + LTD G  + P++IT NT++  YC L  +  A   F ++   +  P+  T
Sbjct: 167 VDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFT 226

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +T L+  +C+   ++ A  +F  M    P+ N V+Y+ LI G  ++  +  A + +  M 
Sbjct: 227 YTSLVLGYCRNDDVERACGVFCVM----PRRNAVSYTNLIHGLCEAGKLHEALEFWARMR 282

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           E+   P +            +GR  EA+ L+  M   G  P+    + L DY
Sbjct: 283 EDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDY 334



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 41/201 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++KE   D A ++  +L   G +P+++TY   I  YCS  RL+EA ++  K+    +  +
Sbjct: 580 VLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLD 639

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL-----IDGYFKSQNMKSA 116
           S  + +LI+A+   G +D A  +  +M   G + + +TYS L     I+ + K  +    
Sbjct: 640 SFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVG 699

Query: 117 FDV------------------------YEEMCENNISPNI------------AGRPTEAM 140
            DV                        +E+M E    PN+             GR   A 
Sbjct: 700 LDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAF 759

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
            LY  M   GI P  ++ ++L
Sbjct: 760 SLYHHMREGGISPSEIIHNSL 780



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A+ L   +    ++P + TYN ++         D A ++  +L     +PN
Sbjct: 545 LRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPN 604

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T  I A+C +GR+++A  M  K+  +G   +   Y+ LI+ Y     + SAF V  
Sbjct: 605 VVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLR 664

Query: 122 EMCENNISPN 131
            M      P+
Sbjct: 665 RMFGTGCEPS 674



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 55/107 (51%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ + G  P++ TY+ +I G C + RL+ A  L+  +    + P+ I    L+ + C
Sbjct: 726 LFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCC 785

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           K G   +A  +   M+E    A++ +Y  LI G F+  N + A  V+
Sbjct: 786 KLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVF 832



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 11/139 (7%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSITFTILIDAFCKEGRMDDAT 82
            + +YN ++      + +DE + L++++       + PN IT   +++++CK G M  A 
Sbjct: 150 SLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVAR 209

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------AG 134
           + F ++L   P  ++ TY+ L+ GY ++ +++ A  V+  M   N             AG
Sbjct: 210 LFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAG 269

Query: 135 RPTEAMQLYDSMLRNGIMP 153
           +  EA++ +  M  +G  P
Sbjct: 270 KLHEALEFWARMREDGCFP 288



 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  L+  + + G+ P  I +N+++   C L    EAV L + +       +
Sbjct: 749 LCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAH 808

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
             ++ +LI    ++   + A  +F  +L  G   + V +  LIDG  K+
Sbjct: 809 LESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKT 857



 Score = 35.8 bits (81), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query: 49  LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
           LFEK+      PN  T++ LI+  CK GR++ A  ++  M E G   + + ++ L+    
Sbjct: 726 LFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCC 785

Query: 109 KSQNMKSAFDVYEEMCE 125
           K      A  + + M E
Sbjct: 786 KLGMFGEAVTLLDSMME 802


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L  A KL   +  +G  P+ +TYN+++ G C   +LD+A+ L  ++   +  PN
Sbjct: 80  LCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPN 139

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF  L+D F K GR  D   +   + EKG + N  +YS LI G FK    +    +++
Sbjct: 140 DITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWK 199

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E    PN              G+P EA +    M   G  P+    S+L
Sbjct: 200 EMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSL 251



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 4/150 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A+++F  ++DR    D  TY+T++ G C+  R+DEAV L +++      PN + F 
Sbjct: 15  NVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFN 74

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI A CK+G +  A+ +   M  KG   N VTY+ L+ G      +  A  +   M  N
Sbjct: 75  VLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVAN 134

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
              PN     T    L D  +++G   DG+
Sbjct: 135 KCVPNDITFGT----LVDGFVKHGRALDGV 160



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            +++   L ++G   +  +Y+++I G     + +  +QL++++     KPN+I ++ LID
Sbjct: 159 GVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALID 218

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+EG+ D+A     +M  KG   N  TYS L+ GYF++ ++  A  V++EM +N+ + 
Sbjct: 219 GLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNH 278

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +              G+  EA+ ++  ML  GI  D +  S++
Sbjct: 279 HEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSM 321



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   D A +   ++ ++G  P+  TY++++ GY     + +A+ +++++T      +
Sbjct: 220 LCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHH 279

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ILI+  CK G++ +A +++ +ML +G K +VV YS +I G+  +Q ++    ++ 
Sbjct: 280 EVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFN 339

Query: 122 EM-CEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
           +M C N  + P++                + A+ + ++ML  G  PD     + L TL D
Sbjct: 340 QMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRD 399



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 12/143 (8%)

Query: 33  IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           I+   C +  +D+AV++F  ++      +  T++ L+   C EGR+D+A  +  +M  +G
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAM 140
              N V ++ LI    K  ++  A  + + M      PN            + G+  +AM
Sbjct: 66  TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAM 125

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
            L + M+ N  +P+ +   TL D
Sbjct: 126 SLLNRMVANKCVPNDITFGTLVD 148


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 89/156 (57%), Gaps = 12/156 (7%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
             +D A++L G++ + G+EP+++ Y++++ GYC   R ++  ++F +++   ++P+ + +
Sbjct: 164 AEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMY 223

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T LID+ CK G+   A  +   M+ +G + NVVTY+ LI+   K  ++K A  V ++M E
Sbjct: 224 TGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSE 283

Query: 126 NNISPNIAGRPT------------EAMQLYDSMLRN 149
             ++P++    T            EAM L + M+R 
Sbjct: 284 KGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG 319



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ L   +   G+  D++TY T+I G C    +D+AV+L  ++    ++PN + ++ L
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSL 191

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +  +CK GR +D   +F +M EKG + +VV Y+ LID   K    K A  V + M    +
Sbjct: 192 LQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGL 251

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            PN+             G   EA+ +   M   G+ PD +  +TL
Sbjct: 252 EPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSITFTILIDAFCKEGRMDDAT 82
           D ++YNT++   C     D A  L   ++       +PN++++T+L+ A C +   D A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +   M   G +A+VVTY  LI G   +  +  A ++  EMCE+ I PN+          
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +GR  +  +++  M   GI PD ++ + L D
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLID 228



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 12/143 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P+ ++Y  ++   C+    D+AV L   +    ++ + +T+  LI   C    +D A  
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +  +M E G + NVV YS L+ GY KS   +    V+ EM E  I P++           
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 133 -AGRPTEAMQLYDSMLRNGIMPD 154
             G+  +A  + D M+R G+ P+
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPN 254



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 91/175 (52%), Gaps = 14/175 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++   + + G   +++TYN +I G   ++++ +A++L +++T + L+P+S T++ILI 
Sbjct: 346 AFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIK 405

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK  ++D A  + S M ++G +  +  Y  L+    +   M+ A +++ EM +NN   
Sbjct: 406 GFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPL 464

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           ++            AG    A +L  S++  G+ PD +  S + +     SG  E
Sbjct: 465 DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINM-FAKSGDME 518



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L   + DRG+EP++  Y  ++   C    ++ A  LF ++       + +
Sbjct: 409 KMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVV 467

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ +I   CK G +  A  +   ++++G   + VTYS +I+ + KS +M++A  V ++M
Sbjct: 468 AYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             +   P++A            G   + ++L   M+   I  D  ++STL+
Sbjct: 528 TASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLS 578


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 15/165 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  LD A K+  ++  RG  PD++TYN+ I G C  +R+DEA +   ++    + P+
Sbjct: 157 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPD 213

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++T +I+  CK G +D A+ M   M  +G   +VVTYS LIDG+ K   ++ A  + +
Sbjct: 214 VVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLD 273

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M +    PN+             G   +A  +   M R G  PD
Sbjct: 274 SMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPD 318



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 22/179 (12%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS---- 62
           H+  A  +  ++  RG  PD+++YN  I G C   R+ +A  +F+++      PN+    
Sbjct: 299 HIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYS 358

Query: 63  ------ITFTILIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKS 115
                 + +T+L+D  CK GR D+A  +FSK+L EK  + +V  Y+ ++D + K + +  
Sbjct: 359 MLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDK 418

Query: 116 AFDVYEEMCENN----ISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           A  ++++M E N    ++ NI         R ++A  +  +M+  G +PD +   TL D
Sbjct: 419 ALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVD 477



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 87/155 (56%), Gaps = 4/155 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD+A ++   +++RG  PD++TY+++I G+C    ++ A+ L + +  +  +PN
Sbjct: 224 LCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPN 283

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  L+ A  + G +  A  M  +M  +G   +VV+Y+  IDG  K++ +K A  V++
Sbjct: 284 MVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFD 343

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156
            M E   +PN +   + +M + D +L   ++ DGL
Sbjct: 344 RMVERGCTPNAS---SYSMLIVDILLYT-VLLDGL 374



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 15/167 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A K   ++    + PD+++Y T+I G C    LD A ++ + ++     P+ +T++
Sbjct: 197 RVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYS 253

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID FCK G ++ A  +   ML+ G + N+V Y+ L+    +  ++  A D+  EM   
Sbjct: 254 SLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERR 313

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +P++            A R  +A  ++D M+  G  P+    S L
Sbjct: 314 GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 360



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L+ A KL G++ + G  PD   YN +I GY       +A +   ++      P 
Sbjct: 52  LCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPT 111

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T ++D  CK  R  DA  +  +M +KG   N+ TY+ +++G  + + +  A  + E
Sbjct: 112 VVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLE 171

Query: 122 EMCENNISPNIA 133
           EM      P++ 
Sbjct: 172 EMAVRGYFPDVV 183



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G E ++ TYN ++      +R D+A  +F+++     +P++ TF IL+   C+  +++ A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  +M E G   +   Y+ LI GY K+++   AF    EM +N+  P +         
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPD 154
              A R  +A++L D M   G  P+
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPN 146



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 15/165 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K   ++      P ++TY  I+ G C   R  +AV+L +++      PN  T+ ++++
Sbjct: 96  AFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVE 155

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+E ++D+A  M  +M  +G   +VVTY+  I G  K   +  A      M    ++P
Sbjct: 156 GLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTP 212

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++    T             A ++ D M   G  PD +  S+L D
Sbjct: 213 DVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLID 257



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 22/177 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQ----LFEKLTCV 56
           L K    D A  LF ++ D  + EPD+  YN ++  +C   ++D+A+Q    + EK  C 
Sbjct: 374 LCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC- 432

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
               N +T+ IL+   C + R+ DA  M   M+++G   + VTY  L+D   K     +A
Sbjct: 433 ----NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAA 488

Query: 117 FDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +++EE  +    P++                 EA  L+  ++    +PD   L  L
Sbjct: 489 LELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLL 545



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E   D A  +F ++ D+  +PD  T+  ++ G C  N+L++A +L  ++  +   P+
Sbjct: 17  LTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPD 76

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI  + K      A    ++M++      VVTY+ ++DG  K++  + A  + +
Sbjct: 77  DAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLD 136

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM +   SPNI              +  EA ++ + M   G  PD
Sbjct: 137 EMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+ +F ++  +G+ PD++TY+T+I  +C + RL +A++ F ++  + L+PN++
Sbjct: 451 KRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTV 510

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            +  LI  FC  G +  A  + S+M+ KG P+ N+V +S +I        +  A DV+  
Sbjct: 511 VYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNL 570

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +      P I             G+  +A  + D+M+  GI PD +  +TL
Sbjct: 571 VIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTL 621



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +  Q+ D+G+EPD +TY  II GY       E+ ++F K+T   L P 
Sbjct: 309 LCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPG 368

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF   + + CK GR  DA  +F  M  KG   ++V+YS L+ GY          +++ 
Sbjct: 369 IVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFH 428

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  I  N              G   EAM ++  M   G+ PD +  STL
Sbjct: 429 SMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTL 480



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 73/122 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +   G  P I+T+N++I GYC + ++++A  + + +  V ++P+ +T+  L+ 
Sbjct: 564 AHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVS 623

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK G++DD  ++F +ML K  K   VTYS ++DG F +    +A  ++ EM ++  + 
Sbjct: 624 GYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAV 683

Query: 131 NI 132
           +I
Sbjct: 684 DI 685



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 93/182 (51%), Gaps = 21/182 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +   +   G+EPD++TYNT++ GYC   ++D+ + LF ++   ++KP ++T++I
Sbjct: 596 MEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSI 655

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D     GR   A  MF +M++ G   ++ TY  L+ G  ++     A  ++ ++   +
Sbjct: 656 VLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 715

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLADYNLQSSGS 171
              +I              R  EA  L+ ++  +G++P+    G+++     +NL   GS
Sbjct: 716 CKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMI-----HNLLKEGS 770

Query: 172 QE 173
            E
Sbjct: 771 VE 772



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 12/150 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            PD++++NT+I G+     + +A  L  ++    ++P+ +T+  ++DA CK   MD A +
Sbjct: 261 SPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAEL 320

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
           +  +M++KG + + +TY+ +I GY  S + K +  ++ +M    + P I           
Sbjct: 321 VLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLC 380

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             GR  +A +++  M   G MPD +  S L
Sbjct: 381 KHGRSKDAEEIFQYMTTKGHMPDLVSYSIL 410



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +T +G  PD+++Y+ ++ GY +  R  +   LF  +    +  N   F ILI 
Sbjct: 388 AEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILIS 447

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K G MD+A ++F++M  +G + +VVTYS LI  + +   +  A + + +M    + P
Sbjct: 448 AHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEP 507

Query: 131 N------------IAGRPTEAMQLYDSMLRNGI-MPDGLLLSTL 161
           N            + G   +A +L   M+  GI  P+ +  S++
Sbjct: 508 NTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSI 551



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           L  A +L  ++  +G+  P+I+ +++II   C+  R+ +A  +F  +  +  +P  +TF 
Sbjct: 525 LVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFN 584

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID +C  G+M+ A  +   M+  G + +VVTY+ L+ GY KS  +     ++ EM   
Sbjct: 585 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHK 644

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            + P              AGR + A +++  M+ +G   D
Sbjct: 645 KVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVD 684



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 81/154 (52%), Gaps = 14/154 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFTILIDA 71
           L  +++D G  P+ I+YNT+I   C  +R  EA+ + +++     +  P+ ++F  +I  
Sbjct: 214 LLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG 273

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           F K+G +  A  + ++M++KG + +VVTY+ ++D   K++ M  A  V  +M +  + P+
Sbjct: 274 FFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPD 333

Query: 132 ------------IAGRPTEAMQLYDSMLRNGIMP 153
                        +G   E+ +++  M   G++P
Sbjct: 334 GLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIP 367



 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 15/168 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQ-LFEKLTCVQLKPNSITFTI 67
           D     F +L   GL    I  NT +   C   R DEAV  L  +++ +   PN+I++  
Sbjct: 173 DLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNT 232

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +I + C + R  +A  M  +M ++G +   +VV+++ +I G+FK   +  A ++  EM +
Sbjct: 233 VIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQ 292

Query: 126 NNISPNIA-----------GRPTEAMQLY-DSMLRNGIMPDGLLLSTL 161
             + P++             R  +  +L    M+  G+ PDGL  + +
Sbjct: 293 KGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAI 340



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA K+F ++ D G   DI TY  ++ G C  +  DEA+ LF KL  +  K +      +I
Sbjct: 668 AAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVI 727

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           +A  K  R ++A  +F+ +   G   NV TY  +I    K  +++ A  ++  M ++  +
Sbjct: 728 NALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCA 787

Query: 130 PN 131
           P+
Sbjct: 788 PS 789



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF +L     + DI   NT+I     + R +EA  LF  ++   L PN  T+ ++
Sbjct: 702 DEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVM 761

Query: 69  IDAFCKEGRMDDATMMFSKMLEKG 92
           I    KEG +++A  MFS M + G
Sbjct: 762 IHNLLKEGSVEEADTMFSSMEKSG 785


>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
          Length = 772

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 73/123 (59%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A + F ++ +R + PD++TYNT+I GY  + +++EA + F ++    ++P  I++T 
Sbjct: 273 VETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTT 332

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +   GR+DD   +F +M   G K N VTYS L+ G    + M  A +V +EM E  
Sbjct: 333 MIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERY 392

Query: 128 ISP 130
           I+P
Sbjct: 393 IAP 395



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++K+F ++ + G+E  I +Y+ +        R   A + F  +    + P   T+ I+I 
Sbjct: 206 SVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIW 265

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F    +++ A   F +M E+    +VVTY+ +I+GY++ + M+ A   + EM   NI P
Sbjct: 266 GFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEP 325

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +             GR  + ++L++ M   GI P+ +  STL
Sbjct: 326 TVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTL 368



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 23/181 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL--TCVQLKPN 61
           K   LDAA  +   +    +  +   Y  +I  +C     D AV+L +KL    + L+P 
Sbjct: 410 KAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQ 469

Query: 62  ------SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
                 S  + ++I+  C  G+   A  +F ++++KG + + + ++ LI G+ K    +S
Sbjct: 470 NSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQ-DPIAFNNLIRGHSKEGAPES 528

Query: 116 AFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           AF++ + M    + P  A             G P +A    D M+ NG +PD  L  ++ 
Sbjct: 529 AFEILKIMGRREV-PREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVM 587

Query: 163 D 163
           +
Sbjct: 588 E 588



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   L+ A  +   +  +G+E D   +  +I  Y     + E+V++F+K+  + ++ 
Sbjct: 161 ILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVER 220

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              ++  L     + GR   A   F+ ML +G      TY+ +I G+F S  +++A   +
Sbjct: 221 TIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFF 280

Query: 121 EEMCENNISPNI 132
           EEM E  ISP++
Sbjct: 281 EEMKERRISPDV 292



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 15/161 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF QL  +G++ D I +N +I G+      + A ++ + +   ++   +  + +LI+
Sbjct: 495 AETLFRQLMKKGVQ-DPIAFNNLIRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIE 553

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +F K+G   DA      M+E G   +   +  +++  F+   +++A  V   M E  +  
Sbjct: 554 SFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKE 613

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMP--DGLL 157
           N            + G   EA+   D ++ NG  P  DGLL
Sbjct: 614 NMDLVAKILEALLLRGHVEEALGRIDLLMNNGCEPDFDGLL 654


>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 15/166 (9%)

Query: 2   LIKEC-HLDAALKLFGQLTDRGLEPDIITYNTII-CGYCSLNRLDEAVQLFEKLTCVQLK 59
           + ++C +LD A KLF ++ +RG++PD IT++TII C   S +  ++AV+ FEK+      
Sbjct: 185 VFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVS-SLPNKAVEWFEKMPEFGCH 243

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+ +T++ +IDA+ + G +D A  ++ +   +  + + VT+S LI  Y  S N     +V
Sbjct: 244 PDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV 303

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           YEEM    + PN+            A RP +A  +Y  M  NG+ P
Sbjct: 304 YEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQP 349



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 15/170 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D ALKL+ +        D +T++T+I  Y      D  + ++E++  + +KPN + + 
Sbjct: 261 NVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYN 320

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+DA  +  R   A  ++ +M   G + +  TY+ L+  Y +++  + A  VY+EM E 
Sbjct: 321 TLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEK 380

Query: 127 ---NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              N  P+             +G+ +EA  + ++ML  G  P+  +L++L
Sbjct: 381 GSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSL 430



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 9/127 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL------TCVQLKPNSIT 64
           A  ++ ++T+ GL+P   TY  ++  Y      ++A+ +++++       C+   P+S T
Sbjct: 335 AKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGSGNCM---PDSWT 391

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F+ LI  +   G++ +A  M + MLE G + N+   + LI  Y K+         ++ + 
Sbjct: 392 FSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLL 451

Query: 125 ENNISPN 131
           E +I+P+
Sbjct: 452 ELDITPD 458


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL++F  +   G+EP+++ Y T++ GYC + R+DE + LF ++    +KP++I ++I
Sbjct: 550 MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSI 609

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID   + GR   A + F +M E G   ++ TY+ ++ G FK++    A  +++E+   N
Sbjct: 610 IIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI              R  EA  L+ S+ R+ ++P  +  S +
Sbjct: 670 VKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIM 715



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++ F Q+ D+G+ PD   YN +I G+C+   L +A +L  ++    +  + + F+ 
Sbjct: 445 MDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 504

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK GR+ DA  +F   +  G   + V YS L+DGY     M+ A  V++ M    
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           I PN+             GR  E + L+  ML+ GI P  +L S + D   Q+ 
Sbjct: 565 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAG 618



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 75/122 (61%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F    + GL PD + Y+ ++ GYC + ++++A+++F+ +    ++PN + +  L++
Sbjct: 518 AQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVN 577

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK GR+D+   +F +ML++G K + + YS +IDG F++     A   + EM E+ I+ 
Sbjct: 578 GYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAM 637

Query: 131 NI 132
           +I
Sbjct: 638 DI 639



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K C +D    LF  +   G+ PD  T+N +I  Y +   LD+A+ +F ++    +KP+ +
Sbjct: 372 KGCLVDMT-DLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 430

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I A C+ G+MDDA   F++M+++G   +   Y+CLI G+    ++  A ++  E+
Sbjct: 431 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 490

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             N +  +I             GR  +A  ++D  +  G+ PD ++ S L D
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMD 542



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++ + G+  DI+ +++II   C L R+ +A  +F+    V L P+++ +++L+D
Sbjct: 483 AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMD 542

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G+M+ A  +F  M+  G + NVV Y  L++GY K   +     ++ EM +  I P
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 602

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +             AGR   A   +  M  +GI  D
Sbjct: 603 STILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMD 638



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 9/128 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF----EKLTCVQLKPNSITFT 66
           AL  FGQL   GL  +II  N ++ G+C   R DEA+ +      +L CV   P+  +++
Sbjct: 130 ALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCV---PDVFSYS 186

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           IL+ + C +G+   A  +   M E G     NVV Y+ +IDG+FK  ++  A D+++EM 
Sbjct: 187 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV 246

Query: 125 ENNISPNI 132
           +  I P++
Sbjct: 247 QRGIPPDL 254



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  ++ A  LF ++  RG+ PD++TYN+++   C    +D+A     ++   ++ PN
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 288

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  LI  +   G+  +A  +F +M       +VVT S L+    K   +K A DV++
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 348

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M     +P++             G   +   L+D ML +GI PD
Sbjct: 349 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 393



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A     Q+ ++ + P+  TYN +I GY S  +  EAV++F+++    + P+
Sbjct: 264 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 323

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T ++L+ + CK G++ +A  +F  M  KG   +V +Y+ +++GY     +    D+++
Sbjct: 324 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFD 383

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  + I+P+              G   +AM +++ M  +G+ PD +   T+
Sbjct: 384 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 435



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 12/142 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++ YNT+I G+     +++A  LF+++    + P+ +T+  ++ A CK   MD A   
Sbjct: 217 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 276

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
             +M+ K    N  TY+ LI GY  +   K A  V++EM  ++I P++            
Sbjct: 277 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
            G+  EA  ++D+M   G  PD
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPD 358



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  +F  +  +G  PD+ +YN ++ GY +   L +   LF+ +    + P+
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 393

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF +LI A+   G +D A ++F++M + G K +VVTY  +I    +   M  A + + 
Sbjct: 394 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 453

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M +  ++P+              G   +A +L   ++ NG+  D +  S++
Sbjct: 454 QMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 505



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++T+ G+  DI TYN ++ G       DEA+ LF++L  + +K N IT   +ID   +
Sbjct: 627 FHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQ 686

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             R+++A  +F+ +       +VVTYS +I    K   ++ A D++  M      PN
Sbjct: 687 TRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 743



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ LF +L    ++ +IIT NT+I G     R++EA  LF  ++  +L P+
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 708

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++I+I    KEG +++A  MFS M   G + N    + ++    K   +  A     
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 122 EMCENNIS 129
           ++ E N S
Sbjct: 769 KIDERNFS 776



 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           L P S T+ IL+D   +  R + A   F ++L  G + N++  + L++G+ +++    A 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 118 DV 119
           D+
Sbjct: 167 DI 168


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 72/123 (58%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF ++   G+ P+++TYN II G C   RLDEA +  EK+   ++ P+ IT+++ 
Sbjct: 273 DDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVF 332

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+   K  ++D+A  +  +M E G   N V Y+ LIDGY K  N+  A  + ++M    I
Sbjct: 333 INGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGI 392

Query: 129 SPN 131
           SPN
Sbjct: 393 SPN 395



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L  + +++  +   G+ PD+  ++T+I  +C  +R D+A+ LF K+  + + PN
Sbjct: 231 LVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I   CK GR+D+A     KM+++    +++TYS  I+G  K + +  A  V +
Sbjct: 291 VVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLK 350

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E    PN              G  +EA+++ D ML  GI P+ + L++L
Sbjct: 351 EMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSL 402



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 68/116 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  L  ++   GL P+++ Y TII GY  L ++++   + ++++   + PN  T+TI
Sbjct: 692 VDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTI 751

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +ID FCK G+  +A  + ++M EKG   + VTY+   +G  K   ++ AF V +EM
Sbjct: 752 MIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEM 807



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 47/196 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L+ +    G  P++ TY  +I GYC  N+++E   L  +L   +L+ NS+ +  
Sbjct: 587 IDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNS 646

Query: 68  LIDAFCKEGRM-----------------------------------DDATMMFSKMLEKG 92
           LI A+C  G M                                   DDA  +  +M ++G
Sbjct: 647 LIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEG 706

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAM 140
              NVV Y+ +I GY K   M     V +EM  +NI PN              G+  EA 
Sbjct: 707 LLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAA 766

Query: 141 QLYDSMLRNGIMPDGL 156
           +L + M   GI+PD +
Sbjct: 767 KLLNEMTEKGILPDAV 782



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++   LKL   + +RGL  D ITYNT+I G C   ++ E  +L E++    ++P+
Sbjct: 511 LCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPD 570

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF +L+   C   ++D+A+ ++ +  + G   NV TY  +IDGY K+  ++   ++  
Sbjct: 571 IYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLN 630

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIM 152
           E+    +  N            I G    A +L D M   G++
Sbjct: 631 ELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVL 673



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            AL    ++  R L P+     T++ G C   +  EAV+L+ +L      PN +T   LI
Sbjct: 449 TALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALI 508

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              CK G M +   +   MLE+G   + +TY+ LI G  K   +K  F++ EEM +  I 
Sbjct: 509 HGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQ 568

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           P+I            A +  EA +L+    +NG +P+
Sbjct: 569 PDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPN 605



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  L  +GL P + T   ++      N L ++ ++++ +    + P+   F+ +I+
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFCK  R DDA  +FSKM + G   NVVTY+ +I G  KS  +  A+   E+M +  +SP
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++              +  EA  +   M   G +P+ ++ +TL D
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLID 369



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++AA +L   +  RG+     TY++++ G C++  +D+A  L +++    L PN + +T
Sbjct: 656 NMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYT 715

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  + K G+M+   ++  +M       N  TY+ +IDG+ K    K A  +  EM E 
Sbjct: 716 TIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEK 775

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P+              G+  EA ++ D M    +  D +  +TL D
Sbjct: 776 GILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLID 824



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 47/195 (24%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT------------ 54
           ++  ALK+   +  +G+ P+ +T N++I G+C  +++ +A  + E++             
Sbjct: 376 NISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFS 435

Query: 55  ------CVQ-----------------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                 C++                 L+PN    T L+   CK G+  +A  ++ ++L K
Sbjct: 436 MVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK 495

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGRPTEA 139
           G   N+VT + LI G  K+ NM+    +  +M E     + I+ N         G+  E 
Sbjct: 496 GFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEG 555

Query: 140 MQLYDSMLRNGIMPD 154
            +L + M++ GI PD
Sbjct: 556 FELKEEMVKKGIQPD 570



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           +++   + P+  TY  +I G+C L +  EA +L  ++T   + P+++T+    +  CKEG
Sbjct: 736 EMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEG 795

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           ++++A  +  +M       + +TY+ LIDG
Sbjct: 796 KVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 13/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L  +LK+F ++ D+ + P++ITYN++I G C+  +++EA+ + +K+    ++PN I
Sbjct: 308 KDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLI 367

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK G M +A  MF  +  +G +     Y+ LID Y K   +   F + EEM
Sbjct: 368 TYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               I P++             G    A +L+D +   G +PD
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG-LPD 469



 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 93/154 (60%), Gaps = 6/154 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++AA KLF QLT++GL PD++T++ ++ GYCS     +A  L ++++ + LKP 
Sbjct: 446 LCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPR 504

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+ I++  +CKEG +  AT M ++M  E+  + NV +Y+ L+ GY +   ++ A  + 
Sbjct: 505 HLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLL 564

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
            EM E  + PN   R T  + + + M+  G +PD
Sbjct: 565 NEMLEKGLVPN---RITYEI-VKEEMVDKGFVPD 594



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 87/165 (52%), Gaps = 15/165 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++  R ++P++ T+N +I   C   ++++A  + E +      PN +++  LID +C
Sbjct: 210 LYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYC 269

Query: 74  K---EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           K    G+M  A  +  +M+E     N+ T++ LIDG++K  N+  +  V++EM + ++ P
Sbjct: 270 KLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIP 329

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G+  EA+ + D M+  G+ P+ +   +L +
Sbjct: 330 NVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLIN 374



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 15/158 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK   ++ +  + P++ T+N +I G+   + L  ++++F+++    + PN IT+  L
Sbjct: 281 DAVLK---EMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSL 337

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G++++A  M  KM+  G + N++TY  LI+G+ K+  MK A D+++ +     
Sbjct: 338 INGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGT 397

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            P               G+  +   L + M R GI+PD
Sbjct: 398 RPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPD 435



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 15/177 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL---NRLDEAVQLFEKLTCVQL 58
           L K   ++ A  +   +   G  P++++YNT+I GYC L    ++ +A  + +++   ++
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEV 292

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            PN  TF ILID F K+  +  +  +F +ML++    NV+TY+ LI+G      +  A  
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIG 352

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + ++M    + PN+             G   EA+ ++DS+   G  P   + + L D
Sbjct: 353 MRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLID 409



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 3/95 (3%)

Query: 41  NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           NR  +   L++++   +++PN  TF ++I+A CK G+M+ A  +   M   G   NVV+Y
Sbjct: 202 NRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSY 261

Query: 101 SCLIDGYFK---SQNMKSAFDVYEEMCENNISPNI 132
           + LIDGY K   +  M  A  V +EM EN +SPN+
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNL 296



 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 54/110 (49%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           I  + ++  Y + +R +   + F++      K ++++   L+ A  K+ R  D   ++ +
Sbjct: 154 IIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKE 213

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
           M+ +  + NV T++ +I+   K+  M  A DV E+M     SPN+    T
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNT 263


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 15/166 (9%)

Query: 2   LIKEC-HLDAALKLFGQLTDRGLEPDIITYNTII-CGYCSLNRLDEAVQLFEKLTCVQLK 59
           + ++C +LD A KLF ++ +RG++PD IT++TII C   S +  ++AV+ FEK+      
Sbjct: 185 VFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVS-SLPNKAVEWFEKMPEFGCH 243

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+ +T++ +IDA+ + G +D A  ++ +   +  + + VT+S LI  Y  S N     +V
Sbjct: 244 PDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV 303

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           YEEM    + PN+            A RP +A  +Y  M  NG+ P
Sbjct: 304 YEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQP 349



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D ALKL+ +        D +T++T+I  Y      D  + ++E++  + +KPN + + 
Sbjct: 261 NVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYN 320

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+DA  +  R   A  ++ +M   G + +  TY+ L+  Y +++  + A  VY+EM E 
Sbjct: 321 TLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEK 380

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNG-IMPDGLLLSTL 161
            +  ++             G   EA  +++ M  +G  MPD    S+L
Sbjct: 381 GLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSL 428



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLKPNSITFTILI 69
           AL ++ ++ ++GLE  ++ YNT++     +   +EA  +FE + +     P+S TF+ LI
Sbjct: 370 ALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLI 429

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             +   G++ +A  M + MLE G + N+   + LI  Y K+         ++ + E +I+
Sbjct: 430 TIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDIT 489

Query: 130 PN 131
           P+
Sbjct: 490 PD 491



 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 48/196 (24%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D  L ++ ++   G++P+++ YNT++       R  +A  +++++T   L+P+  T+ 
Sbjct: 296 NFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYA 355

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVV---------------------------- 98
            L+ A+ +    +DA +++ +M EKG + +VV                            
Sbjct: 356 ALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSS 415

Query: 99  --------TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTE 138
                   T+S LI  Y  S  +  A  +   M E    PNI            A R  E
Sbjct: 416 GNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDE 475

Query: 139 AMQLYDSMLRNGIMPD 154
            ++ +D +L   I PD
Sbjct: 476 VVRTFDRLLELDITPD 491


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ L   +   G+  D++TY T+I G C    +D+AV+L  ++    ++PN + ++ L
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSL 191

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +  +CK GR +D   +F +M EKG + +VV Y+ LID   K    K A  V + M    +
Sbjct: 192 LQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGL 251

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            PN+             G   EA+ +   M   G+ PD +  +TL
Sbjct: 252 EPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296



 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 89/153 (58%), Gaps = 12/153 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L G++ + G+EP+++ Y++++ GYC   R ++  ++F +++   ++P+ + +T 
Sbjct: 166 VDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTG 225

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+ CK G+   A  +   M+ +G + NVVTY+ LI+   K  ++K A  V ++M E  
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKG 285

Query: 128 ISPNIAGRPT------------EAMQLYDSMLR 148
           ++P++    T            EAM L + M+R
Sbjct: 286 VAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVR 318



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSITFTILIDAFCKEGRMDDAT 82
           D ++YNT++   C     D A  L   ++       +PN++++T+L+ A C +   D A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +   M   G +A+VVTY  LI G   +  +  A ++  EMCE+ I PN+          
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +GR  +  +++  M   GI PD ++ + L D
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLID 228



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 12/143 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            P+ ++Y  ++   C+    D+AV L   +    ++ + +T+  LI   C    +D A  
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +  +M E G + NVV YS L+ GY KS   +    V+ EM E  I P++           
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 133 -AGRPTEAMQLYDSMLRNGIMPD 154
             G+  +A  + D M+R G+ P+
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPN 254



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 87/163 (53%), Gaps = 13/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++   + + G   +++TYN +I G   ++++ +A++L +++T + L+P+S T++ILI 
Sbjct: 346 AFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIK 405

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FCK  ++D A  + S M ++G +  +  Y  L+    +   M+ A +++ EM +NN   
Sbjct: 406 GFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPL 464

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            AG    A +L  S++  G+ PD +  S +
Sbjct: 465 DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIV 507



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A  L   + DRG+EP++  Y  ++   C    ++ A  LF ++       + +
Sbjct: 409 KMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVV 467

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ +I   CK G +  A  +   ++++G   + VTYS +I+ + KS +M++A  V ++M
Sbjct: 468 AYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
             +   P++A            G   + ++L   M+   I  D  ++STL+
Sbjct: 528 TASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLS 578


>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
           [Vitis vinifera]
          Length = 763

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 73/123 (59%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A + F ++ +R + PD++TYNT+I GY  + +++EA + F ++    ++P  I++T 
Sbjct: 273 VETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTT 332

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +   GR+DD   +F +M   G K N VTYS L+ G    + M  A +V +EM E  
Sbjct: 333 MIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERY 392

Query: 128 ISP 130
           I+P
Sbjct: 393 IAP 395



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++K+F ++ + G+E  I +Y+ +        R   A + F  +    + P   T+ I+I 
Sbjct: 206 SVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIW 265

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F    +++ A   F +M E+    +VVTY+ +I+GY++ + M+ A   + EM   NI P
Sbjct: 266 GFFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEP 325

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +             GR  + ++L++ M   GI P+ +  STL
Sbjct: 326 TVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTL 368



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 23/181 (12%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL--TCVQLKPN 61
           K   LDAA  +   +    +  +   Y  +I  +C     D AV+L +KL    + L+P 
Sbjct: 410 KAGQLDAAADVLKAMIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKEIILRPQ 469

Query: 62  ------SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
                 S  + ++I+  C  G+   A  +F ++++KG + + + ++ LI G+ K    +S
Sbjct: 470 NSLEMESSGYNLIIEYLCNSGQTSKAETLFRQLMKKGVQ-DPIAFNNLIRGHSKEGAPES 528

Query: 116 AFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           AF++ + M    + P  A             G P +A    D M+ NG +PD  L  ++ 
Sbjct: 529 AFEILKIMGRREV-PREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVM 587

Query: 163 D 163
           +
Sbjct: 588 E 588



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   L+ A  +   +  +G+E D   +  +I  Y     + E+V++F+K+  + ++ 
Sbjct: 161 ILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVER 220

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              ++  L     + GR   A   F+ ML +G      TY+ +I G+F S  +++A   +
Sbjct: 221 TIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFF 280

Query: 121 EEMCENNISPNI 132
           EEM E  ISP++
Sbjct: 281 EEMKERRISPDV 292



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 15/161 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF QL  +G++ D I +N +I G+      + A ++ + +   ++   +  + +LI+
Sbjct: 495 AETLFRQLMKKGVQ-DPIAFNNLIRGHSKEGAPESAFEILKIMGRREVPREADAYRLLIE 553

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +F K+G   DA      M+E G   +   +  +++  F+   +++A  V   M E  +  
Sbjct: 554 SFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQTASRVMNNMVEKGVKE 613

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMP--DGLL 157
           N            + G   EA+   D ++ NG  P  DGLL
Sbjct: 614 NMDLVAKILEALLLRGHVEEALGRIDLLMNNGCEPDFDGLL 654


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 13/180 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  ++ A ++F +L D  ++PD  T+N +I G+C   + D+A  + + +   +  P+
Sbjct: 249 LVKENSIEHAHEVFLKLFDT-IKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPD 307

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T  ++A+CKEG       M  +M E G   NVVTY+ ++    KS+ +  A  VYE
Sbjct: 308 VVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYE 367

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E+   P+              GR  +A ++++ M   G+  D L+ +T+    L  S
Sbjct: 368 KMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHS 427



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++  ++ + G  P+++TY  ++       ++ EA+ ++EK+      P++  ++ LI   
Sbjct: 329 EMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHIL 388

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE---NNIS 129
            K GR  DA  +F  M  +G + +V+ Y+ +I         + A  + + M +    + S
Sbjct: 389 SKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCS 448

Query: 130 PNI 132
           PN+
Sbjct: 449 PNV 451



 Score = 40.8 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 15/177 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL ++ ++ + G  PD   Y+++I       R  +A ++FE +T   ++ +
Sbjct: 353 LGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRD 412

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA---NVVTYSCLIDGYFKSQNMKSAFD 118
            + +  +I A     R + A  +  +M ++  ++   NV TY+ L+      + MK    
Sbjct: 413 VLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGI 472

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +   M +N++S ++            +G+  EA   ++  +R G++P       L D
Sbjct: 473 LLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVD 529



 Score = 39.7 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 13/167 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL------T 54
           +L K      A ++F  +T++G+  D++ YNT+I      +R + A++L +++      +
Sbjct: 387 ILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGES 446

Query: 55  CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           C    PN  T+  L+   C + +M    ++   M++     +V TY  LI G   S  ++
Sbjct: 447 C---SPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVE 503

Query: 115 SAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            A   +EE     + P    R +    L D + +  +    L + +L
Sbjct: 504 EACLFFEEAVRKGMVP----RDSTCKMLVDELEKKNMAEAKLKIQSL 546


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L  A  +F Q+ D G+ P++ TYN ++ GYC    + +A+ L++ +    L+PN
Sbjct: 231 LCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPN 290

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ILIDA CK   +  A   F +M + G   NVV ++ LIDGY K+ N   A D+  
Sbjct: 291 VVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLL 350

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +  ISP++             G   EA  +   M + G+  + ++ ++L D
Sbjct: 351 EMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLID 404



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 87/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+   D   +L+  +  R L P ++TYN ++   C    +  A  L  ++    ++P 
Sbjct: 161 LLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPT 220

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI   C E ++ +A  MF +M + G   N+ TY+ L+DGY K+ N+K A  +Y+
Sbjct: 221 VVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQ 280

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M ++ + PN+                  A + +  M + G++P+ ++ ++L D
Sbjct: 281 GMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLID 334



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 17/167 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L AA + F Q+   G+ P+++ +N++I GY       EA  L  ++   ++ P+
Sbjct: 301 LCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPD 360

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ILI   C+ G +++A  +  +M ++G  AN V Y+ LIDGY K  NM+ A +++ 
Sbjct: 361 VFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIF- 419

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
                           +A + +  M RNG+ PD L  + +   +L +
Sbjct: 420 ----------------KATKFFSDMRRNGLRPDALAYAVMLQGHLNA 450



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL+++ ++   G  P +   N ++ G    +  D   +L+  +   +L P  +T+ +
Sbjct: 135 VDEALRVYLKV---GAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNV 191

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA C++G +  A  + S+M++KG +  VV Y+ LI G      +  A  ++ +M ++ 
Sbjct: 192 LVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSG 251

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + PN+                 +A+ LY  ML +G+ P+ +    L D
Sbjct: 252 VFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILID 299



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ------LKPNSITFTI 67
           +  ++   G+  + + YN++I GYC    +++A+++F+            L+P+++ + +
Sbjct: 383 ILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAV 442

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++        M D  M+ + M++ G   N VT   +  GY  +  +KSA     ++ E+ 
Sbjct: 443 MLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNGYLKSALWCSRDLTESC 502

Query: 128 ISPNIAGRPTEAMQL 142
                +  P EA+ L
Sbjct: 503 PRTLESQSPVEAIIL 517



 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 21/156 (13%)

Query: 19  TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCKEGR 77
           T R L  D+I     +   C+  R++  V  F  L+ ++  K N   F +LI AF + G 
Sbjct: 80  TARCLTKDLIQ---TLLQSCTPRRVNSLV--FNALSQLRGSKFNPSVFGVLIIAFSEVGL 134

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           +D+A  ++ K+   G    V   + L++G  K  +    +++Y  M    + P +     
Sbjct: 135 VDEALRVYLKV---GAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNV 191

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   G    A  L   M++ GI P  ++ +TL
Sbjct: 192 LVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTL 227


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A  +  ++  +G  PD  TY+ +I   C+ +++++A QLF+++    + P+   +T 
Sbjct: 203 FEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTT 262

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G ++ A   F +M   G   NVVTY+ LI  Y KS+ +  A +VYE M    
Sbjct: 263 LIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKG 322

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGI-MPD 154
            +PNI            AG+  +A Q+Y  M +  + +PD
Sbjct: 323 CTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPD 362



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           EP++ TY  ++ G C   ++ EA  L + ++    +PN + +  LID  CK G++D+A  
Sbjct: 376 EPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQE 435

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F+ MLE G   NV TYS LID  FK + +  A  V  +M EN+ +PN+           
Sbjct: 436 VFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLC 495

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
             G+  EA +L   M   G  P+ +  + + D     SG  E C+
Sbjct: 496 KVGKTDEAYKLMVMMEEKGCNPNVVTYTAMID-GFGKSGRVEKCL 539



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 72/130 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A ++F  + + G +P++ TY+++I       RLD A+++  K+      PN +
Sbjct: 426 KAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVV 485

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +ID  CK G+ D+A  +   M EKG   NVVTY+ +IDG+ KS  ++   ++ ++M
Sbjct: 486 IYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQM 545

Query: 124 CENNISPNIA 133
                +PN  
Sbjct: 546 SSKGCAPNFV 555



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L   ++  G EP+ + Y+ +I G C   +LDEA ++F  +      PN
Sbjct: 389 LCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPN 448

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LID   K+ R+D A  + SKMLE     NVV Y+ +IDG  K      A+ +  
Sbjct: 449 VYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMV 508

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M E   +PN+            +GR  + ++L   M   G  P+ +    L ++
Sbjct: 509 MMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINH 563



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD ALK+  ++ +    P+++ Y  +I G C + + DEA +L   +      PN
Sbjct: 459 LFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPN 518

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID F K GR++    +  +M  KG   N VTY  LI+    +  +  A  + E
Sbjct: 519 VVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLE 578

Query: 122 EMCENNISPNIAG 134
           EM +     ++AG
Sbjct: 579 EMKQTYWPRHVAG 591



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A K +G++ + G+  + +  +      C + + ++A  +  ++      P++ T++ 
Sbjct: 168 LDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSK 227

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   +++ A  +F +M   G   +V  Y+ LID + K+  ++ A + ++EM  + 
Sbjct: 228 VIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDG 287

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +PN+            + + ++A ++Y+ ML  G  P+ +  + L D
Sbjct: 288 CAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALID 335



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 17/175 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-----LDEAVQLFEKLTCVQLKPNSITF 65
           A KL  ++   G +P  + YN +I G CS        LD A + + ++    +  N +  
Sbjct: 131 AYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNI 190

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +      C  G+ + A  +  +M+ KG   +  TYS +I     +  ++ AF +++EM  
Sbjct: 191 SNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKR 250

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           N I+P++            AG   +A   +D M R+G  P+ +  + L    L+S
Sbjct: 251 NGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKS 305



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A KL   + ++G  P+++TY  +I G+    R+++ ++L ++++     PN +T+ +L
Sbjct: 501 DEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVL 560

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +D+A  +  +M +     +V  Y  +I+G F  + + S +  + E+ EN+ 
Sbjct: 561 INHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEG-FNREFIASLYLSF-EISENDS 618

Query: 129 SP 130
            P
Sbjct: 619 VP 620



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 23/171 (13%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++   +   G  P    +N+++  YC       A +L +K+     +P  + + ILI   
Sbjct: 98  RILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGI 157

Query: 73  C---KEGR--MDDATMMFSKMLEKGP---KANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           C   + G+  +D A   + +MLE G    K N+  +S  + G  K    + A++V  EM 
Sbjct: 158 CSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGK---FEKAYNVIREMM 214

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                P+             A +  +A QL+  M RNGI PD  + +TL D
Sbjct: 215 SKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLID 265


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A++++  + + G++P I+TYNT++  YC   ++ + + L  ++      PN +T+ +
Sbjct: 521 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 580

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+   K+G  + A  +  +ML+ G K +  TY+ LI GYF    +  A  + EEM    
Sbjct: 581 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKG 640

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            SP +A            GR ++AMQ    ML N ++PD +  +TL
Sbjct: 641 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 686



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 6   CHLDAALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C L        QL+D     L PD+++YNT+I GYC L  L +A  LF++L  + L P  
Sbjct: 656 CKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 715

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  L+D  C++G ++ A  +  +M+ +G   ++VTY+ L++G  K  ++  A + ++E
Sbjct: 716 VTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDE 775

Query: 123 MCENNI-------SPNIAGR-----PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    +       +  I G       + A  L + ML  G  PD ++ + + D
Sbjct: 776 MLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVD 828



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   + A  L G++   GL+    TYN +I GY +   L EA+ L E++      P 
Sbjct: 585 LSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPT 644

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   I   CK GRM DA    S ML      +VV+Y+ LI GY +  N+  AF +++
Sbjct: 645 VATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFD 704

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+    + P I             G    A QL   M+  GI PD +  + L +
Sbjct: 705 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 758



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL L  ++  +G  P + TYN+ I G C L R+ +A+Q    +    L P+ +++  
Sbjct: 626 LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNT 685

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C+ G +  A ++F ++        +VTY+ L+DG  +   ++ A  +  EM    
Sbjct: 686 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 745

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160
           I+P+I             G  + A + +D ML  G+  D    +T
Sbjct: 746 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 790



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 64/121 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L+ A +L  ++ + G+ PDI+TY  ++ G C +  L  A + F+++    L+ +
Sbjct: 725 LCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELD 784

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S  +   I    K G    A  +  +ML KG   +++ Y+ ++DG  K  N++ A ++ +
Sbjct: 785 SYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQ 844

Query: 122 E 122
           +
Sbjct: 845 K 845



 Score = 42.7 bits (99), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 50/108 (46%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           E  +   + +I  Y   + +++ + +F+K+   +L P+      ++     +  M  A  
Sbjct: 467 EVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVE 526

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           ++  M E G K  +VTY+ L+D Y K   ++   D+  EM     +PN
Sbjct: 527 VYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPN 574


>gi|428671933|gb|EKX72848.1| pentatricopeptide repeat domain containing protein [Babesia equi]
          Length = 1104

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 19/174 (10%)

Query: 2   LIKECHLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLK 59
           +I EC+     +L+ +  + RG EP+ +TY  +   Y + NR+D+AV+LFE +    ++K
Sbjct: 747 MIDECN-----RLWDEFVNKRGFEPNEVTYGCMFDAYVNNNRVDDAVRLFEDMKSQGKVK 801

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN+I +T LI  + +  ++D A  MF+ M  +   AN VTY+ +ID   +  +M  A  +
Sbjct: 802 PNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIIDACARVGDMNGAASL 861

Query: 120 YEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            E+M  NNI P++    T            ++ QL   M   GIMPD +L ++L
Sbjct: 862 LEDMLNNNIEPDLITFSTIIKGYCVQSNMDKSFQLLSIMYERGIMPDVILYNSL 915



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 10/152 (6%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            +D A++LF  +  +G ++P+ I Y T+I GY    +LD+A+++F  +    +  N++T+
Sbjct: 783 RVDDAVRLFEDMKSQGKVKPNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTY 842

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +IDA  + G M+ A  +   ML    + +++T+S +I GY    NM  +F +   M E
Sbjct: 843 NSIIDACARVGDMNGAASLLEDMLNNNIEPDLITFSTIIKGYCVQSNMDKSFQLLSIMYE 902

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
             I P++         LY+S+L  G +  GLL
Sbjct: 903 RGIMPDVI--------LYNSLLE-GCVKSGLL 925



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 67/125 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD ALK+F  +    +  + +TYN+II     +  ++ A  L E +    ++P+ ITF+
Sbjct: 819 QLDKALKMFNMMCSENVAANTVTYNSIIDACARVGDMNGAASLLEDMLNNNIEPDLITFS 878

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  +C +  MD +  + S M E+G   +V+ Y+ L++G  KS  +     ++++M + 
Sbjct: 879 TIIKGYCVQSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWQQMQQY 938

Query: 127 NISPN 131
            I P+
Sbjct: 939 GIPPS 943



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 13/167 (7%)

Query: 8    LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            ++ A  L   + +  +EPD+IT++TII GYC  + +D++ QL   +    + P+ I +  
Sbjct: 855  MNGAASLLEDMLNNNIEPDLITFSTIIKGYCVQSNMDKSFQLLSIMYERGIMPDVILYNS 914

Query: 68   LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN- 126
            L++   K G +     ++ +M + G   +  T + LI  Y ++  +   F++ + + +  
Sbjct: 915  LLEGCVKSGLLWLCEKLWQQMQQYGIPPSNFTLTILIKMYGRNGQLDKVFELADTLPKQY 974

Query: 127  --NISPNI----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               I+ ++           GR +  +++Y  M   GI  D     TL
Sbjct: 975  GFTINTHVYTCLMSACITNGRYSMILEVYKCMKSAGIKADAKTFETL 1021



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 5    ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
            + ++D + +L   + +RG+ PD+I YN+++ G      L    +L++++    + P++ T
Sbjct: 887  QSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWQQMQQYGIPPSNFT 946

Query: 65   FTILIDAFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             TILI  + + G++D    +   + ++ G   N   Y+CL+     +       +VY+ M
Sbjct: 947  LTILIKMYGRNGQLDKVFELADTLPKQYGFTINTHVYTCLMSACITNGRYSMILEVYKCM 1006


>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
          Length = 561

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 74/128 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +   A  L  ++  +GL P   +Y+ +I G C    L  A++L  ++T   +  N  
Sbjct: 133 KHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVY 192

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI  FCK+G MD+AT +F KM+E     N VT++ +I+GY +  N++ AF +Y++M
Sbjct: 193 TFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQM 252

Query: 124 CENNISPN 131
            +  ++P+
Sbjct: 253 LDRGLTPD 260



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL +F ++ ++G+   +  YN++I GYC  N   +A  L  ++    L P+
Sbjct: 96  LCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPS 155

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +++ LI   C++G +  A  +  +M       NV T++ LI G+ K  NM  A  ++ 
Sbjct: 156 PASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFH 215

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M E+++ PN              G   +A QLYD ML  G+ PD     +L
Sbjct: 216 KMMESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSL 267



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+  + +L GQ    G+  +++  N  I       R  EA +LF  +    L PN +T+ 
Sbjct: 31  HIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVTYA 90

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI + CK G M+DA  MF +M EKG +  V  Y+ LI+GY K  N   A  +  EM   
Sbjct: 91  ILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAK 150

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGI 151
            ++P+ A            G    AM+L+  M RN +
Sbjct: 151 GLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAV 187



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 60/103 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L +A++L  ++T   +  ++ T+  +I G+C    +DEA +LF K+    L PN
Sbjct: 166 LCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPN 225

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            +TF ++I+ +C+ G +  A  ++ +ML++G   +  TY  LI
Sbjct: 226 EVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLI 268



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 96/240 (40%), Gaps = 80/240 (33%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP--- 60
           K+ ++D A +LF ++ +  L P+ +T+N +I GYC +  + +A QL++++    L P   
Sbjct: 203 KDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNY 262

Query: 61  --------------------------------NSITFTILIDAFCKE------------- 75
                                           NS + T L+  FCKE             
Sbjct: 263 TYRSLISVVCLTLGAMKAKEFVADLENNCAVLNSFSLTALMHGFCKEGSAEILCKEMLAG 322

Query: 76  -------------------GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
                              G ++ A ++ + MLE G  AN VT++ LI G+  +  ++ A
Sbjct: 323 HFLPNSYTYNCFLDYLANEGELEKAKVLHAAMLE-GCLANTVTFNTLIKGFCMAGQIQGA 381

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            D+ ++  E+   P+              G   +A +L++ ML  G+ PD +  + L  +
Sbjct: 382 IDLMQKNTESGFFPDCISYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYTILIRW 441



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 9/126 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L+ A  L   + + G   + +T+NT+I G+C   ++  A+ L +K T     P+
Sbjct: 338 LANEGELEKAKVLHAAMLE-GCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPD 396

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD--- 118
            I+++ +I+  CK G  + A  ++++ML KG K ++V Y+ LI    +  N+   FD   
Sbjct: 397 CISYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYTILI----RWCNIHGEFDKGL 452

Query: 119 -VYEEM 123
            +Y +M
Sbjct: 453 GIYSDM 458



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A+ L  + T+ G  PD I+Y+TII   C +   ++A +L+ ++    LKP+ + +T
Sbjct: 377 QIQGAIDLMQKNTESGFFPDCISYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYT 436

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPK 94
           ILI      G  D    ++S M+   P+
Sbjct: 437 ILIRWCNIHGEFDKGLGIYSDMVTVLPE 464


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+KL  ++  +G +PD++TYN +I G C   RLDEA++    +     KPN IT  I++ 
Sbjct: 262 AMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILR 321

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + C  GR  DA  + S ML KG   +VVT++ LI+   + + +  A DV E+M ++   P
Sbjct: 322 SMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVP 381

Query: 131 N-IAGRP-----------TEAMQLYDSMLRNGIMPDGLLLSTL 161
           N ++  P             A++  + M+  G  PD +  +TL
Sbjct: 382 NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 424



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 15/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL++  +++   + PD++TYNTI+   C   +L EA+++ ++    +  P+ I
Sbjct: 188 KSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVI 244

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI+A C +  +  A  +  +M +KG K +VVTY+ LI+G  K   +  A      M
Sbjct: 245 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 304

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 PN+             GR  +A +L   MLR G  P  +  + L ++
Sbjct: 305 PSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINF 357



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 74/132 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +DAA+++  QL+ +G  P +ITYNT+I G   + + + AV+L E++    LKP+
Sbjct: 428 LCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPD 487

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ L+    +EG++D+A  +F  M     K + VTY+ ++ G  K+Q    A D   
Sbjct: 488 IITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLA 547

Query: 122 EMCENNISPNIA 133
            M E    P  A
Sbjct: 548 YMVEKGCKPTEA 559



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +D A++    +  RG  PDI+TYNT++   C   ++D AV++  +L+     P  I
Sbjct: 395 QEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLI 454

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +ID   K G+ + A  +  +M  KG K +++TYS L+ G  +   +  A  ++ +M
Sbjct: 455 TYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDM 514

Query: 124 CENNISPN 131
              +I P+
Sbjct: 515 EGLSIKPS 522



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ +  ++   G  P+ ++YN ++ G+C   ++D A++  E +      P+ +T+  
Sbjct: 364 LGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNT 423

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ A CK+G++D A  + +++  KG    ++TY+ +IDG  K    + A ++ EEM    
Sbjct: 424 LLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKG 483

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           + P+I             G+  EA++++  M    I P  +
Sbjct: 484 LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAV 524



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 47/205 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--------------------- 42
           KE  LD A+K    +   G +P++IT+N I+   CS  R                     
Sbjct: 290 KEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVV 349

Query: 43  --------------LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                         L  A+ + EK+      PNS+++  L+  FC+E +MD A      M
Sbjct: 350 TFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 409

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
           + +G   ++VTY+ L+    K   + +A ++  ++     SP +             G+ 
Sbjct: 410 VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 469

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
             A++L + M R G+ PD +  STL
Sbjct: 470 EYAVELLEEMRRKGLKPDIITYSTL 494



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 15/165 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L+  LK   ++  +G  PD+I   ++I G+C   +  +A ++ E L      P+
Sbjct: 116 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPD 175

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ +LI  +CK G +D A  +  +M       +VVTY+ ++     S  +K A +V +
Sbjct: 176 VITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLD 232

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
              +    P++                 +AM+L D M + G  PD
Sbjct: 233 RQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPD 277



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           L+E ++  E++      P+ I  T LI  FC+ G+   AT +   +   G   +V+TY+ 
Sbjct: 122 LEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNV 181

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           LI GY KS  +  A +V E M   +++P++            +G+  EAM++ D  L+  
Sbjct: 182 LIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRE 238

Query: 151 IMPDGLLLSTLADYNLQSSG 170
             PD +  + L +     SG
Sbjct: 239 CYPDVITYTILIEATCNDSG 258


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 2   LIKECHLDA----ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LIK C +      AL L+  +   G EP+++ YNT+I G CS   L+EA+Q+ +++    
Sbjct: 320 LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             PN  T++ILID F K G +  A+  +++M+  G + NVVTY+C++D   K+     A 
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQAN 439

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            + E+M     +PN              GR   AM+L + M  +G +P+
Sbjct: 440 SLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  A + + ++   G  P+++TY  ++   C  +  D+A  L EK+T     PN++
Sbjct: 396 KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTM 455

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF   I   C  GR++ A  +  +M   G   N+ TY+ L+D  F+    + AF +++E+
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI 515

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              N+ PN+            AG   EA+QL+   L  G  PD +  +T+
Sbjct: 516 EARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 42/204 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITY------------------------------N 31
           L K   +DAA KLF +++++G  PD +TY                              N
Sbjct: 189 LCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYN 248

Query: 32  TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
            +I G C   R++ A++L  ++    + PN ++++ +I++ C  G ++ A  +F++M  +
Sbjct: 249 ALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR 308

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA 139
           G  AN+ T++ LI G F    +  A D+++ M ++   PN+             G   EA
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
           +Q+ D M R+G +P+    S L D
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILID 392



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 43/205 (20%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+  +   GL P++ TYN ++   C  +R+D A +LF +++     P+++T+T ++ + C
Sbjct: 166 LYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225

Query: 74  KEGRMDD------------------------------ATMMFSKMLEKGPKANVVTYSCL 103
           K G++DD                              A  +  +M++ G   NVV+YSC+
Sbjct: 226 KAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCI 285

Query: 104 IDGYFKSQNMKSAFDVYEEM----CENNI---SPNIA-----GRPTEAMQLYDSMLRNGI 151
           I+    S N++ AF ++ +M    C+ NI   +P I      G+  EA+ L+  M+++G 
Sbjct: 286 INSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGC 345

Query: 152 MPDGLLLSTLADYNLQSSGSQEHCI 176
            P+ +  +TL  + L S+GS E  +
Sbjct: 346 EPNVVAYNTLI-HGLCSNGSLEEAL 369



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  LF ++  R L+P+++TYNT++ G+     + EA+QLF K       P+SIT+  +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565

Query: 69  IDAFCKEGRMDDATMM---FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           I A+CK+G++  A  +    S M E  P  +++TY+ LI G     N++ A    ++   
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHP--DIITYTSLIWGACNWMNIEEAMAFLDKAIN 623

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNG 150
             I PN A         +DS+   G
Sbjct: 624 QGICPNFATWNALVRCFFDSLGHMG 648



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A+KL G++ D G++P++++Y+ II   C    ++ A  LF ++       N  
Sbjct: 256 KEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIH 315

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI      G++ +A  ++  M++ G + NVV Y+ LI G   + +++ A  V ++M
Sbjct: 316 TFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +   PN+            +G    A + ++ M+ +G  P+ +  + + D
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVD 427



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+KL  ++   G  P+I TYN ++     +N+ +EA  LF+++    L+PN +T+ 
Sbjct: 469 RVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYN 528

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE- 125
            ++  F + G M +A  +F K L +G   + +TY+ +I  Y K   +K A  + E +   
Sbjct: 529 TVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSM 588

Query: 126 NNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
               P+I    +            EAM   D  +  GI P+
Sbjct: 589 KEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPN 629



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALK+F ++ + G +P +  YN ++    S N+      L+  +    L PN  T+ IL
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNIL 185

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM----------KSAFD 118
           + A CK  R+D A  +F +M  KG   + VTY+ ++    K+  +          K +  
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVP 245

Query: 119 VYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
           VY  + +        GR   A++L   M+ NG+ P+
Sbjct: 246 VYNALIDGMCK---EGRIEVAIKLLGEMMDNGVDPN 278



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 59/130 (45%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +EC +D    +  Q+   G+      +  II GY  +   ++A+++F ++     KP 
Sbjct: 84  LGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPT 143

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+DA   E +      +++ M + G   NV TY+ L+    K+  + +A  ++ 
Sbjct: 144 VRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFV 203

Query: 122 EMCENNISPN 131
           EM      P+
Sbjct: 204 EMSNKGCPPD 213



 Score = 35.8 bits (81), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F  +I+ + + G  + A  MF ++ E G K  V  Y+ L+D        +    +Y  M 
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           ++ + PN+              R   A +L+  M   G  PD +  +T+ 
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMV 221


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKP 60
           L K   +  A +L  ++   G +P++ T+ ++I G C     + A +LF KL      KP
Sbjct: 324 LCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKP 383

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  T+T +I  +CKE ++  A M+F +M E+G   N  TY+ LIDG+ K+ N   A+++ 
Sbjct: 384 NVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELM 443

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           E M      PN              GR  EA +L ++  +N I  DG+  + L
Sbjct: 444 ELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTIL 496



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+  F ++T  GL P++I Y+++I G C    + +A +L E++     KPN  T T 
Sbjct: 295 VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 354

Query: 68  LIDAFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           LI   CK+G  + A  +F K++     K NV TY+ +I GY K + +  A  ++E M E 
Sbjct: 355 LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 414

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + PN             AG  ++A +L + M   G  P+    +++ D
Sbjct: 415 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVD 463



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 63/111 (56%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KLF ++   GL P   TY ++ICGYC   ++  AV+ F+K++     P+SI++  LI   
Sbjct: 546 KLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGL 605

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           CKE R+D+A  ++  M++KG     VT   L   Y K+++  SA  + E +
Sbjct: 606 CKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERL 656



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL    ++   G +PDI  Y T+I  +C  N + ++ +LF+++  + L P   
Sbjct: 502 KRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKE 561

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +I  +C+E ++  A   F KM + G   + ++Y  LI G  K   +  A  +Y+ M
Sbjct: 562 TYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTM 621

Query: 124 CENNISPNIAGRPT 137
            +  +SP    R T
Sbjct: 622 IDKGLSPCEVTRVT 635



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ +RG   D  T   II  +C  + ++ AV  F K+T + L PN I ++ +I   CK G
Sbjct: 269 EMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRG 328

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-NNISPN---- 131
            +  A  +  +M++ G K NV T++ LI G  K    + AF ++ ++   +N  PN    
Sbjct: 329 SVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTY 388

Query: 132 ---IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              I+G     + + A  L++ M   G++P+    +TL D
Sbjct: 389 TAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 428



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A KL        +E D +TY  +I   C    +++A+    K+  V  +P+
Sbjct: 465 LCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPD 524

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +T LI AFC++  M D+  +F ++++ G      TY+ +I GY + + +  A   ++
Sbjct: 525 IHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQ 584

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           +M ++  +P+       I+G     R  EA QLYD+M+  G+ P
Sbjct: 585 KMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSP 628



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K+   + A +LF +L      +P++ TY  +I GYC   +L  A  LFE++    L P
Sbjct: 359 LCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVP 418

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ T+T LID  CK G    A  +   M  +G   N  TY+ ++DG  K    + AF + 
Sbjct: 419 NTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 478

Query: 121 EEMCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
               +N I  +                  +A+   + M + G  PD  L +TL
Sbjct: 479 NTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTL 531



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L  A  LF ++ ++GL P+  TY T+I G+C      +A +L E ++     PN+ 
Sbjct: 397 KEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTC 456

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  ++D  CK GR ++A  + +   +   +A+ VTY+ LI    K  +M  A     +M
Sbjct: 457 TYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKM 516

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMP 153
            +    P+I    T            ++ +L+D +++ G+ P
Sbjct: 517 FKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAP 558



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +  A+K F +++D G  PD I+Y  +I G C  +RLDEA QL++ +    L P  +
Sbjct: 572 REKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEV 631

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEK 91
           T   L   +CK      A ++  ++ +K
Sbjct: 632 TRVTLTYEYCKTEDFASAMVILERLNKK 659



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+ +   + ++GL       N II     +  ++ A  +F++++   + P+S T+  
Sbjct: 190 LKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 249

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +C+ G + +A     +M+E+G   +  T + +I  + +   +  A   + ++ +  
Sbjct: 250 IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 309

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +SPN+             G   +A +L + M++NG  P+
Sbjct: 310 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPN 348



 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A +L+  + D+GL P  +T  T+   YC       A+ + E+L     K  
Sbjct: 605 LCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERL---NKKLW 661

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
             T   LI   C E ++  A + F K+L+K    + VT
Sbjct: 662 IRTVHTLIRKLCCEKKVALAALFFHKLLDKEVNVDRVT 699


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 2   LIKECHLDA----ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LIK C +      AL L+  +   G EP+++ YNT+I G CS   L+EA+Q+ +++    
Sbjct: 320 LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             PN  T++ILID F K G +  A+  +++M+  G + NVVTY+C++D   K+     A 
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQAN 439

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            + E+M     +PN              GR   AM+L + M  +G +P+
Sbjct: 440 SLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488



 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L  A + + ++   G  P+++TY  ++   C  +  D+A  L EK+T     PN+I
Sbjct: 396 KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTI 455

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF   I   C  GR++ A  +  +M   G   N+ TY+ L+D  F+    + AF +++E+
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEI 515

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              N+ PN+            AG   EA+QL+   L  G  PD +  +T+
Sbjct: 516 EARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 42/204 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITY------------------------------N 31
           L K   +DAA KLF +++++G  PD +TY                              N
Sbjct: 189 LCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYN 248

Query: 32  TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
            +I G C   R++ A++L  ++    + PN ++++ +I++ C  G ++ A  +F++M  +
Sbjct: 249 ALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR 308

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA 139
           G  AN+ T++ LI G F    +  A D+++ M ++   PN+             G   EA
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 140 MQLYDSMLRNGIMPDGLLLSTLAD 163
           +Q+ D M R+G +P+    S L D
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILID 392



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 43/205 (20%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+  +   GL P++ TYN ++   C  +R+D A +LF +++     P+++T+T ++ + C
Sbjct: 166 LYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225

Query: 74  KEGRMDD------------------------------ATMMFSKMLEKGPKANVVTYSCL 103
           K G++DD                              A  +  +M++ G   NVV+YSC+
Sbjct: 226 KAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCI 285

Query: 104 IDGYFKSQNMKSAFDVYEEM----CENNI---SPNIA-----GRPTEAMQLYDSMLRNGI 151
           I+    S N++ AF ++ +M    C+ NI   +P I      G+  EA+ L+  M+++G 
Sbjct: 286 INSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGC 345

Query: 152 MPDGLLLSTLADYNLQSSGSQEHCI 176
            P+ +  +TL  + L S+GS E  +
Sbjct: 346 EPNVVAYNTLI-HGLCSNGSLEEAL 369



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  LF ++  R L+P+++TYNT++ G+     + EA+QLF K       P+SIT+  +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565

Query: 69  IDAFCKEGRMDDATMM---FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           I A+CK+G++  A  +    S M E  P  +++TY+ LI G     N++ A    ++   
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHP--DIITYTSLIWGACNWMNIEEAMAFLDKAIN 623

Query: 126 NNISPNIAGRPTEAMQLYDSMLRNG 150
             I PN A         +DS+   G
Sbjct: 624 QGICPNFATWNALVRCFFDSLGHMG 648



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A+KL G++ D G++P++++Y+ II   C    ++ A  LF ++       N  
Sbjct: 256 KEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIH 315

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI      G++ +A  ++  M++ G + NVV Y+ LI G   + +++ A  V ++M
Sbjct: 316 TFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +   PN+            +G    A + ++ M+ +G  P+ +  + + D
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVD 427



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+KL  ++   G  P+I TYN ++     +N+ +EA  LF+++    L+PN +T+ 
Sbjct: 469 RVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYN 528

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE- 125
            ++  F + G M +A  +F K L +G   + +TY+ +I  Y K   +K A  + E +   
Sbjct: 529 TVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSM 588

Query: 126 NNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
               P+I    +            EAM   D  +  GI P+
Sbjct: 589 KEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPN 629



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALK+F ++ + G +P +  YN ++    S N+      L+  +    L PN  T+ IL
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNIL 185

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM----------KSAFD 118
           + A CK  R+D A  +F +M  KG   + VTY+ ++    K+  +          K +  
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVP 245

Query: 119 VYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
           VY  + +        GR   A++L   M+ NG+ P+
Sbjct: 246 VYNALIDGMCK---EGRIEVAIKLLGEMMDNGVDPN 278



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 59/130 (45%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +EC +D    +  Q+   G+      +  II GY  +   ++A+++F ++     KP 
Sbjct: 84  LGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPT 143

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+DA   E +      +++ M + G   NV TY+ L+    K+  + +A  ++ 
Sbjct: 144 VRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFV 203

Query: 122 EMCENNISPN 131
           EM      P+
Sbjct: 204 EMSNKGCPPD 213



 Score = 35.8 bits (81), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F  +I+ + + G  + A  MF ++ E G K  V  Y+ L+D        +    +Y  M 
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           ++ + PN+              R   A +L+  M   G  PD +  +T+ 
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMV 221


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L KE   +A  +   +L D  G  PDI+TY+T+I  Y  +  L  A+++  ++    +K 
Sbjct: 390 LCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKM 449

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+IT   ++DA CKE ++D+A  + +   ++G   + VTY  LI G+F+ + ++ A +++
Sbjct: 450 NTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMW 509

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +EM +  I+P ++            G+   AM+ +D +  +G++PD
Sbjct: 510 DEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPD 555



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 75/129 (58%), Gaps = 4/129 (3%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH    + A++ F +L + GL PD  T+N+II GYC   R+++A + + +      KP++
Sbjct: 532 CHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDN 591

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  IL++  CKEG  + A   F+ ++E+  + + VTY+ +I  + K + +K A+D+  E
Sbjct: 592 YTCNILLNGLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCKDKKLKEAYDLLSE 650

Query: 123 MCENNISPN 131
           M E  + P+
Sbjct: 651 MEEKGLEPD 659



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNSITFT 66
           + +A ++F  +   G+  ++ T+N ++ GYC   +L++A+ + E++    ++ P+++T+ 
Sbjct: 185 ISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYN 244

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++ A  K+GR+ D   +   M + G   N VTY+ L+ GY K  ++K AF + E M + 
Sbjct: 245 TILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT 304

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+ P++            AG   E ++L D+M    + PD +  +TL D
Sbjct: 305 NVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLID 353



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 69/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A  L      RG   D +TY T+I G+    ++++A+++++++  V++ P 
Sbjct: 461 LCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPT 520

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  LI   C  G+ + A   F ++ E G   +  T++ +I GY K   ++ AF+ Y 
Sbjct: 521 VSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYN 580

Query: 122 EMCENNISPN 131
           E  +++  P+
Sbjct: 581 ESIKHSFKPD 590



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L    +L   +   GL P+ +TYN ++ GYC L  L EA Q+ E +    + P+  
Sbjct: 252 KKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLC 311

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILI+  C  G M +   +   M     + +VVTY+ LIDG F+      A  + E+M
Sbjct: 312 TYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQM 371

Query: 124 CENNISPN 131
             + +  N
Sbjct: 372 ENDGVKAN 379



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++   +    + PD+ TYN +I G C+   + E ++L + +  ++L+P+ +T+  
Sbjct: 291 LKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNT 350

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-N 126
           LID   + G   +A  +  +M   G KAN VT++  +    K +  ++     +E+ + +
Sbjct: 351 LIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMH 410

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             SP+I             G  + A+++   M + GI  + + L+T+ D
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILD 459



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 5   ECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           E  L+ AL +  ++ ++  + PD +TYNTI+       RL +  +L   +    L PN +
Sbjct: 217 EGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRV 276

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+  +CK G + +A  +   M +     ++ TY+ LI+G   + +M+   ++ + M
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAM 336

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
               + P++             G   EA +L + M  +G+
Sbjct: 337 KSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGV 376



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE   + AL  F  L +   E D +TYNT+I  +C   +L EA  L  ++    L+P+
Sbjct: 601 LCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPD 659

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK 87
             T+   I    ++G++ +   +  K
Sbjct: 660 RFTYNSFISLLMEDGKLSETDELLKK 685



 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 23/106 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV------- 56
           K+  L  A  L  ++ ++GLEPD  TYN+ I       +L E  +L +K +         
Sbjct: 637 KDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRD 696

Query: 57  ----------------QLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                           +L   +I ++ +ID  C  GR+ + +  ++
Sbjct: 697 LQVETEKNPATSESKEELNTEAIAYSDVIDELCSRGRLKEHSRSYT 742



 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG---YFKSQNMKSA 116
           P+   F I + A+  EG+   A  +F KM+    K N++T + L+ G   Y  S ++ SA
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188

Query: 117 FDVYEEMCENNISPNI 132
            +V+++M +  +S N+
Sbjct: 189 REVFDDMVKIGVSLNV 204


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 81/130 (62%), Gaps = 1/130 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+ +     A+ LF ++ D GL PD+ TYN +I  +C  ++L EA+ LF+++    +KP+
Sbjct: 377 LLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPS 435

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+  +CK+G MD+A  ++S+M  +G K NVVTY  L+ GY   ++  +A+ + +
Sbjct: 436 INTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLD 495

Query: 122 EMCENNISPN 131
           EM +N +S N
Sbjct: 496 EMKQNGVSCN 505



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K   + +A  ++ Q+ ++GL P+IITY + I GYC     D A+++   +    L+P+
Sbjct: 551 FVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPD 610

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LI+ FC+EG M  A  +   +L+ G   N V Y+ LI GY     MK     YE
Sbjct: 611 IVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYE 670

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  I  + +            G    A++LY  M+  G +PD    + L
Sbjct: 671 SMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTAL 722



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E ++  AL+L   L   GL P+ + YN++I GY +LN + E  + +E +    +  ++ 
Sbjct: 623 QEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTS 682

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID F K+G +  A  ++S+M+ KG   +  T++ L  G  +S ++  A  + EEM
Sbjct: 683 TYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEM 742

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
              ++ PN       I G     +  EA +L+D ML  GI PD
Sbjct: 743 RRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPD 785



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 15/175 (8%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M+ + C +D  LK F      G  P ++TYN+II G+     +  A  +++++    L P
Sbjct: 518 MVDRVCEVDGMLKSF---MSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPP 574

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N IT+T  ID +C+ G  D A  M + +  +G + ++V Y+ LI+G+ +  NM  A  + 
Sbjct: 575 NIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLL 634

Query: 121 EEMCENNISPN-------IAGRPT-----EAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + ++ ++PN       I G        E  + Y+SM++ GI+ D    +TL D
Sbjct: 635 VILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLID 689



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 12/177 (6%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D ALK+   +  RGL+PDI+ YN +I G+C    +  A+QL   L    L PN++ +  L
Sbjct: 593 DMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSL 652

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +     M + +  +  M++ G  A+  TY+ LIDG+ K  N+  A ++Y EM     
Sbjct: 653 ITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGY 712

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
            P+             +G    A +L + M R  + P+  + + L +  L+    QE
Sbjct: 713 IPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQE 769



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+KL+ ++   G +P+++TY T++ GY +    D A  L +++    +  N  
Sbjct: 448 KKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDY 507

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +LI+  C   R+ +   M    + +G    ++TY+ +I+G+ K+  M SAF VY++M
Sbjct: 508 TYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQM 567

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            E  + PNI             G    A+++ + + R G+ PD
Sbjct: 568 REKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPD 610



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  Q+T +GL P     + ++ G  +  R  +AV LFE++    L P+  T+  LI 
Sbjct: 351 AYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIH 409

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+  ++ +A  +F +M + G K ++ TY+ L+ GY K   M  A  +Y EM      P
Sbjct: 410 WHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKP 469

Query: 131 NIAGRPT------------EAMQLYDSMLRNGI 151
           N+    T             A  L D M +NG+
Sbjct: 470 NVVTYITLMRGYIAKKDFDNAYALLDEMKQNGV 502



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE   + A++LF ++    ++PD   Y   I   C L     A+++  ++  V      
Sbjct: 203 LKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCD 262

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+  ++D   K GRM++A  +  +M + G K +V+  + L+ GY   Q + +A ++++E
Sbjct: 263 FTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKE 322

Query: 123 MCENNISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLS 159
             ++ I P            +  G   +A +L   M   G++P    LS
Sbjct: 323 TLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELS 371



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+K   ++ AL++  ++ D G + D+I   T++ GYC    +  A+ LF++     + P
Sbjct: 271 VLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVP 330

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             + + +LI    + G    A  +  +M  +G   +    S ++ G    +  K A  ++
Sbjct: 331 TKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLF 390

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           EEM ++ + P++            A +  EA+ L+D M + G+ P
Sbjct: 391 EEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKP 434



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL LF ++  RG   D   ++ ++         ++AV+LF+++   ++ P+   + + I 
Sbjct: 176 ALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAIT 235

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK G    A  M  +M E G      TY  ++D   K+  M+ A  V +EM +     
Sbjct: 236 ALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKM 295

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           ++    T             A+ L+   L++GI+P  ++   L
Sbjct: 296 DVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVL 338



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 57/105 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++  AL+L+ ++  +G  PD  T+  +  G C    +D A +L E++  + ++PN  
Sbjct: 693 KDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVF 752

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            + +LI+ + ++ ++ +A  +  +ML  G + +  TY  L+   F
Sbjct: 753 IYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVSKKF 797



 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 38/68 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +D A KL  ++    + P++  YN +I GY    +L EA +L +++  + ++P+
Sbjct: 726 LCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPD 785

Query: 62  SITFTILI 69
             T+ IL+
Sbjct: 786 DTTYDILV 793


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 17/179 (9%)

Query: 2   LIKECHLDAALKLFGQLTDR-----GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           L K   +D AL+LF  +  R     G EPD+I+Y+T+I   C   R+D+A + F+++  V
Sbjct: 190 LCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAV 249

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
              PN +T++ LID  CK  R  +   +   M EKG   N++ ++ ++   +K+   + A
Sbjct: 250 GCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKA 309

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              +E + ++   PN+            AGR  EA ++   M+ + + PD +  S++ D
Sbjct: 310 CQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIID 368



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A + F +L   G +P+++TYN  + G C   R+DEA ++  ++   ++ P+
Sbjct: 300 LWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPD 359

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ +ID FCK GRMD A  +F++M+      + VT+  L+ G+ + +  + AF V+E
Sbjct: 360 VITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHE 419

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +M      P +            A     A+++Y  M R    PD
Sbjct: 420 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPD 464



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 88/164 (53%), Gaps = 18/164 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A +L  ++ +RG++ D++ ++T+I G C   R+DEA++ F+ +   +  PN I
Sbjct: 123 KAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG-EECSPNVI 181

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEK-----GPKANVVTYSCLIDGYFKSQNMKSAFD 118
           T+  +++  CK  R+D+A  +F  M ++     G + +V++YS +ID   K+Q +  A++
Sbjct: 182 TYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYE 241

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
            ++ M     +PN+              RP+E ++L   M   G
Sbjct: 242 YFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKG 285



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 47/199 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE---------------- 45
           L K   +D A + F ++   G  P+++TY+++I G C ++R  E                
Sbjct: 230 LCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGIN 289

Query: 46  -------------------AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                              A Q FE+L     KPN +T+ + +   CK GR+D+A  +  
Sbjct: 290 IIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILL 349

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           +M+E     +V+TYS +IDG+ K+  M  A DV+  M  +   P+               
Sbjct: 350 EMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 409

Query: 135 RPTEAMQLYDSMLRNGIMP 153
           +  EA ++++ M+  G +P
Sbjct: 410 KSREAFRVHEDMVNAGFIP 428



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 19/173 (10%)

Query: 9   DAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D A   F    ++ G + +  T   ++  +    R +EA +L ++       PN I +T 
Sbjct: 57  DVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTT 116

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+ FCK G++D A  +  +M E+G K +V+ +S LI G  +   +  A + ++ M E  
Sbjct: 117 VINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGE-E 175

Query: 128 ISPNI------------AGRPTEAMQLYDSMLR-----NGIMPDGLLLSTLAD 163
            SPN+            A R  EA++L+D M +     +G  PD +  ST+ D
Sbjct: 176 CSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVID 228



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++AL+++ ++  +  +PD  TY  +I   C   R+DEA +  + +    + PN      
Sbjct: 446 VESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHA 505

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE------ 121
           L++  CK+G +D+A  +   ++E G +    T+  L++  +  +  ++A  +        
Sbjct: 506 LVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVA 565

Query: 122 -----EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
                 +C   I    AG+P EA+++ + M+  G+ PD
Sbjct: 566 DAATYSLCVAEICK--AGKPDEAVEVIEQMVLKGVRPD 601



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 1   MLIKECHL----DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +L++E +L    +AA KL   L   G   D  TY+  +   C   + DEAV++ E++   
Sbjct: 540 ILVEELYLRKKWEAASKL---LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLK 596

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            ++P+  T+  ++ + C   R++ A   F KM  +G    +VTY+ LI     +     A
Sbjct: 597 GVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEA 656

Query: 117 FDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
           F ++E M     +P       + M+   S LR+    D L+
Sbjct: 657 FRIFEAMVAAGFTPQ-----AQTMRTLSSCLRDAGYQDLLV 692



 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++  ++ +  + PD+ITY++II G+C   R+D+A  +F ++   +  P+
Sbjct: 335 LCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPH 394

Query: 62  SITF-----------------------------------TILIDAFCKEGRMDDATMMFS 86
            +TF                                    +L+D  C    ++ A  ++ 
Sbjct: 395 PVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYH 454

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------G 134
           KM  K  + +  TY+ LI    +++ +  A +  + M  +N+ PN A            G
Sbjct: 455 KMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQG 514

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              EA  + D+++  G  P G     L +
Sbjct: 515 EVDEACSVLDNVVEVGCQPLGETFKILVE 543



 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 50/200 (25%)

Query: 23  LEPDIITYNTIICG-----YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF----- 72
           +E D +  N  IC       C    +DEA  + + +  V  +P   TF IL++       
Sbjct: 491 MEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKK 550

Query: 73  ---------------------------CKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
                                      CK G+ D+A  +  +M+ KG + +  TY  ++ 
Sbjct: 551 WEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLR 610

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
                  ++SA   +E+M     +P +            A    EA +++++M+  G  P
Sbjct: 611 SLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTP 670

Query: 154 DGLLLSTLADYNLQSSGSQE 173
               + TL+   L+ +G Q+
Sbjct: 671 QAQTMRTLSSC-LRDAGYQD 689


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 20/168 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A K+  ++   GL PD++TY  +ICG+C +  ++E+ +L EK+    LK + +T+T+
Sbjct: 356 ISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTV 415

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ + CK GR+D+A ++  +M   G K +++TYS           ++ A ++YEEMC   
Sbjct: 416 LLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS--------RGAVEEAIELYEEMCSKR 467

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I PN              G  +EA   +DS+ ++ +  + +L + + D
Sbjct: 468 IYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMID 515



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ + Q+ ++G+ P I+T+N++I G+C   +L EAV+L + +    L P S+T+T L++
Sbjct: 526 AVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMN 585

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+EG M     M  +M  K  K   +TY+ ++ G  K   +  +  + + M    + P
Sbjct: 586 GYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFP 645

Query: 131 NIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +     T            +A QL++ ML++ + P  +  + L +
Sbjct: 646 DQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLIN 690



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL+    + + G+EPDI+TYN +  G+  L  +  A ++ +++    L P+ +T+TI
Sbjct: 321 MEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTI 380

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G ++++  +  KML +G K ++VTY+ L+    KS  +  A  +  EM    
Sbjct: 381 LICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIG 440

Query: 128 ISPNI----AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++     G   EA++LY+ M    I P+  + S +
Sbjct: 441 LKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAI 478



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 86/165 (52%), Gaps = 5/165 (3%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A+KL   +   GL P  +TY T++ GYC    +     +  ++    +KP  I
Sbjct: 554 KKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQI 613

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T+++   CKEGR+ ++  +   M  +G   + +TY+ +I  + K+ +++ AF ++ +M
Sbjct: 614 TYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQM 673

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDG-LLLSTLADYNLQ 167
            ++++ P+    P     L + +   G + D   LL TL D +++
Sbjct: 674 LQHSLQPS----PVTYNVLINGLCVYGNLKDADRLLVTLQDQSIR 714



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +  A   F  +T   +  +II YN +I GY  L  + EAV+ ++++    + P 
Sbjct: 482 LFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPT 541

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF  LI  FCK+G++ +A  +   +   G     VTY+ L++GY +  +M S FD+  
Sbjct: 542 IVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLH 601

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    I P               GR  E++QL   M   G+ PD +  +T+
Sbjct: 602 EMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTV 653



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 90/174 (51%), Gaps = 20/174 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L  ++   GL+PD++TY        S   ++EA++L+E++   ++ PN
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTY--------SRGAVEEAIELYEEMCSKRIYPN 471

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S   + +I    ++G + +A M F  + +      ++ Y+ +IDGY K  N+  A   Y+
Sbjct: 472 SFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYK 531

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++ E  ISP I             G+  EA++L D++  +G++P  +  +TL +
Sbjct: 532 QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMN 585



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  +++L   +  RGL PD ITYNT+I  +C  + L +A QL  ++    L+P+
Sbjct: 622 LCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPS 681

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LI+  C  G + DA  +   + ++  +   V Y+ +I  +    ++++A   + 
Sbjct: 682 PVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFH 741

Query: 122 EMCENNISPNIAGRP------------TEAMQLYDSMLRNGIMPD 154
           +M E     +I                T+A   +  ML +GI PD
Sbjct: 742 QMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPD 786



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A   F  +   GL PD+ +YN ++ G C    ++EA++    +    ++P+ +T+ I
Sbjct: 286 VDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI 345

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L + F   G +  A  +  +ML  G   ++VTY+ LI G+ +  N++ +F + E+M    
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
           +  +I            +GR  EA+ L   M   G+ PD L  S
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS 449



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H D    ++ ++   G+  +  T   +I G C  +RL +AV    +    +  P+ ++F 
Sbjct: 215 HTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFN 274

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  FCK G +D A   F  M++ G   +V +Y+ L+ G   + +M+ A +   +M  +
Sbjct: 275 ALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENH 334

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            + P+I             G  + A ++   ML NG+ PD
Sbjct: 335 GVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPD 374



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 25/174 (14%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +  ++    L+  I TYN+++    +L   D    ++ ++    +  N  T  ILID
Sbjct: 187 ALFVLAKMKVLNLQVSIATYNSLLY---NLRHTDIMWDVYNEIKASGVPQNEYTNPILID 243

Query: 71  AFCKEGRMDDATMMFSKM--LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             C++ R+ DA     +    E GP  +VV+++ L+ G+ K  ++  A   +  M +  +
Sbjct: 244 GLCRQSRLQDAVTFLRETGGEEFGP--SVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL 301

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
            P+            +AG   EA++  + M  +G+ PD      +  YN+ ++G
Sbjct: 302 LPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD------IVTYNILANG 349



 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 55/123 (44%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A +L   L D+ +    + Y TII  +C+   +  A+  F ++     + +   ++ 
Sbjct: 698 LKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSA 757

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK   + DA   F  ML  G   +      +++ + +S +  S F+++  M +  
Sbjct: 758 VINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCG 817

Query: 128 ISP 130
           + P
Sbjct: 818 LLP 820


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 16/172 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTII--CGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           K   LDA  KLF ++  RG+ PD +T++TII     CSL   ++AV+ FEK++    +P+
Sbjct: 174 KSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLP--NKAVEWFEKMSSFGCEPD 231

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ +IDA+ + G +D A  ++ +   +  + + VT+S LI  Y  + N     +VY+
Sbjct: 232 DVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQ 291

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM    + PN+            A RP +A  +Y  M  NG  P+ +  ++L
Sbjct: 292 EMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASL 343



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A++ F +++  G EPD +TY+ +I  Y     +D A++L+++    + + +++TF+ L
Sbjct: 214 NKAVEWFEKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTL 273

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +   G  D    ++ +M   G K N+V Y+ L+D   +++    A  +Y EM  N  
Sbjct: 274 IKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGF 333

Query: 129 SPNIA-----------GRPTE-AMQLYDSMLRNGIMPDGLLLSTL 161
           SPN             GR +E A+ +Y  M   G+  +  L +TL
Sbjct: 334 SPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTL 378



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 8/141 (5%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D AL+L+ +        D +T++T+I  Y      D  + +++++  + +KPN + + 
Sbjct: 247 NIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYN 306

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+DA  +  R   A  ++++M   G   N VTY+ L+  Y + +  + A  VY+EM E 
Sbjct: 307 TLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEK 366

Query: 127 NISPNIAGRPTEAMQLYDSML 147
            +  N          LY+++L
Sbjct: 367 GMEMNT--------HLYNTLL 379



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 52/220 (23%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L ++ ++   G++P+++ YNT++       R  +A  ++ ++T     PN +T+  L
Sbjct: 284 DGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASL 343

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANV------------------------------- 97
           + A+ +    +DA  ++ +M EKG + N                                
Sbjct: 344 LRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSAT 403

Query: 98  -----VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
                 T+S LI  Y  + N+  A  +  EM E+   P I             GR  + +
Sbjct: 404 CLCDSWTFSSLITIYSCTGNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDVV 463

Query: 141 QLYDSMLRNGIMPD----GLLLSTLADYNLQSSGSQEHCI 176
           + ++ +L  GI PD    G LL+ +     +  G    C+
Sbjct: 464 KTFNQLLDLGISPDDRFCGCLLNVMTQTPKEELGKLNDCV 503


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  +D AL+L   L   G +P  + YNT++ G CS  R  +A +L  ++      PN  T
Sbjct: 250 EGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEAT 309

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           F ++I + C++G +  A  +  KM + G  AN+VTY+ +I+G  + +N+  A  +  +M 
Sbjct: 310 FNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMK 369

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                P+I            A +  +A +L D+M +NG +PD +  +TL  +
Sbjct: 370 SYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGF 421



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 76/130 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++ ++D A+ L  ++   G +PDI+TYNT++ G CS  +  +A +L + +T     P+
Sbjct: 352 LCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPD 411

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TF  LI   C++G M DA  +F +M +KG   N +TYS +I G  K+  +  A +++ 
Sbjct: 412 NVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFN 471

Query: 122 EMCENNISPN 131
           EM     +P+
Sbjct: 472 EMGHKGFNPD 481



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +   +  RG  PD++TYN ++   C      +A++L + +      PN++T+ +L+D
Sbjct: 186 ALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMD 245

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C EG +DDA  +   +   G K + V Y+ ++ G   ++    A ++  EM   N  P
Sbjct: 246 GMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPP 305

Query: 131 NIA------------GRPTEAMQLYDSMLRNG 150
           N A            G   +A+QL + M ++G
Sbjct: 306 NEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG 337



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A++L  +++  G   +I+TYN II G C    +D A+ L  K+     KP+
Sbjct: 317 LCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPD 376

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+   C   +  DA  +   M + G   + VT++ LI    +   M  A +V++
Sbjct: 377 IVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFK 436

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           +M +   +PN       I+G     +  +A++L++ M   G  PD
Sbjct: 437 QMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD 481



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           ++P+  TYN +I   C   ++ +A+ + + + C    P+ +T+ IL++A CK      A 
Sbjct: 163 VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 222

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +   M  +G   N VTY+ L+DG     ++  A ++   +  +   P+           
Sbjct: 223 ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 282

Query: 133 --AGRPTEAMQLYDSMLRNGIMPD 154
             A R  +A +L   MLR    P+
Sbjct: 283 CSAERWGDADELVTEMLRENCPPN 306



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD AL+LF ++  +G  PD I Y  +       + ++EA+Q   KL    + P+
Sbjct: 457 LAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPH 515

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  ++   C+ G+ + A  + + M+  G   + +TY  LI+G      +  A ++  
Sbjct: 516 TVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLI 575

Query: 122 EMCENNI 128
           ++C  ++
Sbjct: 576 KLCSRDV 582



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           LD A++L E        P++     L+   C+ GR DDA  +       GP A VV Y  
Sbjct: 87  LDAALRLVES---SPRPPDAALANRLVRDLCRRGRPDDAERVVGAC---GPAATVVAYGA 140

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           L DGY ++  +  A  V   M    + PN              G+  +A+ + D ML  G
Sbjct: 141 LTDGYCRAGRLGDARRVVGGM---PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRG 197

Query: 151 IMPDGLLLSTLADYNLQSSGSQE 173
             PD +  + L +   +  G ++
Sbjct: 198 CAPDVVTYNILLEATCKGRGYRQ 220


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 12/169 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF  L  RG  PD ++YN+++  +     +++  +++E++  +    + +T+  +I 
Sbjct: 380 AEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIH 439

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K+G+ + A  ++  M   G   + VTY+ LID   K+  +  A  V  EM    + P
Sbjct: 440 MYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKP 499

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            +            AG+P EA + +D MLR+GI PD L  S + D +L+
Sbjct: 500 TLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLR 548



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++L  ++   GL PD ITYNT+I      + L+EA ++F+ +     +P+  T+  +I 
Sbjct: 310 AIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMIS 369

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----- 125
            + + G    A  +F+ +  +G   + V+Y+ L+  + +  N++   +++EEM +     
Sbjct: 370 VYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGK 429

Query: 126 ----NNISPNIAGRPTE---AMQLYDSMLRNGIMPDGLLLSTLAD 163
                N   ++ G+  +   A+QLY  M  +G  PD +  + L D
Sbjct: 430 DEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLID 474



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 12   LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
            ++++ ++ + GLEPD  TYNT+I  YC  +R +E   L  ++    L+P   T+  L+ +
Sbjct: 973  IQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVAS 1032

Query: 72   FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            F K+  ++ A  +F ++  KG K +   Y  ++  Y  S +   A  ++  M +  + P 
Sbjct: 1033 FGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPT 1092

Query: 132  IA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            IA            G+P EA ++  ++   G     L  S++ D  L++
Sbjct: 1093 IATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRN 1141



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/110 (20%), Positives = 62/110 (56%)

Query: 14   LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
            +  ++ + G +PD+  +N+++  Y ++    + +Q+++++    L+P+  T+  LI  +C
Sbjct: 940  MLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYC 999

Query: 74   KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ R ++   +  +M   G +  + TY  L+  + K Q ++ A +++EE+
Sbjct: 1000 RDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEEL 1049



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 72/149 (48%), Gaps = 14/149 (9%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM--DDATMM 84
           +  YN ++  Y    R ++  +L + +     KP+ ++F  LI+A  K G M  + A  +
Sbjct: 254 VQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIEL 313

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
            +++   G + + +TY+ LI    ++ N++ A  V+++M  ++  P++            
Sbjct: 314 LNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGR 373

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            G   +A QL++ +   G  PD +  ++L
Sbjct: 374 CGLSGKAEQLFNDLESRGFFPDAVSYNSL 402



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 4/150 (2%)

Query: 1    MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            M  ++   +    L  ++   GLEP + TY +++  +     +++A +LFE+L     K 
Sbjct: 997  MYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKL 1056

Query: 61   NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +   +  ++  +   G    A  +FS M + G +  + T   L+  Y  S   + A  V 
Sbjct: 1057 DRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVL 1116

Query: 121  EEMCENNISPNIAGRPTEAMQLYDSMLRNG 150
              + E     N++  P  +  + D+ LRNG
Sbjct: 1117 SNLKETG--SNLSTLPYSS--VIDAYLRNG 1142



 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 13/167 (7%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K+  ++ A +LF +L  +G + D   Y+T++  Y +     +A +LF  +    ++P   
Sbjct: 1035 KQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIA 1094

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T  +L+ ++   G+  +A  + S + E G   + + YS +ID Y ++ +         +M
Sbjct: 1095 TMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQM 1154

Query: 124  CENNISPN------------IAGRPTEAMQLYDSMLRNGI-MPDGLL 157
             +  + P+            ++ R +EA+ L +++   G  +P  LL
Sbjct: 1155 KKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFDLPIRLL 1201



 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 55/115 (47%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +  ++ + G++P + TY+ +ICGY    +  EA + F+ +    ++P+ + +++++D
Sbjct: 485 AAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLD 544

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
              +      A  ++ +ML  G   +   Y  ++    K   ++    V  +M E
Sbjct: 545 IHLRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEE 599



 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 47/192 (24%)

Query: 9    DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
            + A  +F  +   G  P + T N ++       RLDE   + ++L  +  K +  +  ++
Sbjct: 830  ERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLM 889

Query: 69   IDAFCKEG-----------------------------------RMDDATMMFSKMLEKGP 93
            +DAF + G                                   ++ D   M S+M E G 
Sbjct: 890  LDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGF 949

Query: 94   KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQ 141
            K ++  ++ ++  Y   ++ +    VY+ + E+ + P+               RP E   
Sbjct: 950  KPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFS 1009

Query: 142  LYDSMLRNGIMP 153
            L   M   G+ P
Sbjct: 1010 LMHEMRVAGLEP 1021


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 14/188 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD AL LF ++T +G  P+++TY T+I G C+ +++D A  L +++T      +
Sbjct: 234 LCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPAD 293

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++  L+D +C+ GR+++A  +F +M  K    + +TY+CL+ G+  +  ++ A  + E
Sbjct: 294 TVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLE 353

Query: 122 EM-CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            M     I P++            A R  EA +    M+   + P+ +  S+L D  L  
Sbjct: 354 NMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLID-GLCK 412

Query: 169 SGSQEHCI 176
           +G   H +
Sbjct: 413 AGRVNHAM 420



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 97/175 (55%), Gaps = 15/175 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D A ++  ++  +G+EPD  T++ +I G+C+  ++DEA++L++++     + +
Sbjct: 91  LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLD 150

Query: 62  SITFTILIDAFCKEGRMDDATMMFS--KMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFD 118
           +++ + LI   C+E R+ +A  +F   +M E G  K +VVTY+ LIDG+ KS N++ A  
Sbjct: 151 AVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMK 210

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +   M      PN+            AG   +A+ L+  M   G +P+ +  +TL
Sbjct: 211 MLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTL 265



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 73/128 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+ A+K+ G +  R   P+++TY++++ G C    LD+A+ LF ++T     PN +
Sbjct: 201 KSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVV 260

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI   C   ++D A ++  +M      A+ V+Y+ L+DGY +   ++ A  +++EM
Sbjct: 261 TYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEM 320

Query: 124 CENNISPN 131
              +  P+
Sbjct: 321 AAKSCLPD 328



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 15/175 (8%)

Query: 2   LIKECHLDAALKLFGQLT---DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL 58
           L +E  +  A +LF ++    D   +PD++TY  +I G+C    L++A+++   +   + 
Sbjct: 161 LCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKC 220

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            PN +T++ L+   CK G +D A  +F +M  KG   NVVTY+ LI G   +  + +A  
Sbjct: 221 VPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARL 280

Query: 119 VYEEMC-----ENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + +EM       + +S N         GR  EA QL+  M     +PD +  + L
Sbjct: 281 LMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCL 335



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 63/100 (63%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +PD++TY  +I G C  +R +EA+ L E++   +++P+  TF  +I A C+ G MD+A  
Sbjct: 428 KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWK 487

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +   M   G +  +VTY+ L++G+ ++  M+ A++++E M
Sbjct: 488 LLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 527



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 11  ALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSITFTIL 68
           A ++  ++ D + + PD++TY+T+I G+C    +D A ++  E +T   + P+ +T+T +
Sbjct: 28  AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSV 87

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +D  C++G+MD A  M  +M  KG + +  T+S LI G+  ++ +  A  +Y+E+
Sbjct: 88  VDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEI 142



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 19/162 (11%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL L  ++ ++ +EP + T+N++I   C L  +DEA +L   +    L+P  +T+T L
Sbjct: 448 EEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTL 507

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPK----ANVV---TYSCLIDGYFKSQNMKSAFDVYE 121
           ++ F + GRM+ A  +F  M  K  K    AN+V    +S LI G  K++ +  A  V E
Sbjct: 508 LEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVE 567

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGI 151
           E+      P              AGR  EA +L +S+ + G+
Sbjct: 568 ELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 4   KECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K+  +D A ++  ++  R G+ PD++TY +++ G C   ++D A ++  ++    ++P+ 
Sbjct: 57  KQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDK 116

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            TF+ LI  +C   ++D+A  ++ ++L    + + V+ S LI G  + + +  A+++++E
Sbjct: 117 FTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQE 176

Query: 123 M 123
           M
Sbjct: 177 M 177



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 9/155 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLKPNSITFT 66
           ++ A +LF ++  +   PD ITY  ++ G+C+ +RL+EA  L E + T   + P+ +T++
Sbjct: 310 IEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYS 369

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++  + +  R  +A     +M+ +    N VTYS LIDG  K+  +  A +V + + + 
Sbjct: 370 IVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKP 429

Query: 127 NI---SPNIAG-----RPTEAMQLYDSMLRNGIMP 153
           ++   +  I G     R  EA+ L + M+   + P
Sbjct: 430 DVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEP 464



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 14/151 (9%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           P+  TYN ++ G C      +A ++ +++     + P+ +T++ +I+ FCK+G MD A  
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 84  MFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-------IAG- 134
           +  +M+ + G   +VVTY+ ++DG  +   M  A ++  EM    + P+       I G 
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 135 ----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               +  EA++LY  +L +    D +  S L
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSAL 157



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 75/150 (50%), Gaps = 16/150 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +   ++  R + P+ +TY+++I G C   R++ A+++ + +     KP+ +T+TI+I+
Sbjct: 384 AAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIE 439

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C   R ++A  +  +M+ K  + +V T++ +I    +  +M  A+ +   M  + + P
Sbjct: 440 GLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEP 499

Query: 131 NI------------AGRPTEAMQLYDSMLR 148
            +             GR   A +L++ M R
Sbjct: 500 GMVTYTTLLEGFSRTGRMEIAYELFEVMRR 529



 Score = 45.1 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL--------TCVQLK 59
           +D A KL   +   GLEP ++TY T++ G+    R++ A +LFE +        +   L 
Sbjct: 482 MDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLV 541

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           P    F+ LI   CK   +D A  +  ++  +  +        ++DG  ++   + A
Sbjct: 542 PEQ-AFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEA 597


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 75/125 (60%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A  LF ++ + G+ P+++TYN II GY ++ ++D+A+ LF K+      P+S T+ +
Sbjct: 498 LEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNM 557

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  F K  R+ +A     KM+++G   NV+TY+  IDG  K+     AF ++ EM + +
Sbjct: 558 MISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRD 617

Query: 128 ISPNI 132
             PN+
Sbjct: 618 YFPNL 622



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E   + AL +F  +      P+  TYN II G+CS+  + +A  +F+++      PN
Sbjct: 387 LYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPN 446

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ I+I  + K+G M++A  +   M   G K +  TY+ LI G+ +   ++ AF ++ 
Sbjct: 447 VITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFN 506

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM E+ ISPN+              +  +A+ L+  M+ +G +P          YN+  S
Sbjct: 507 EMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSS------GTYNMMIS 560

Query: 170 G 170
           G
Sbjct: 561 G 561



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL LF ++ + G  P   TYN +I G+   NR+ EA     K+    L PN IT+T 
Sbjct: 533 VDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTS 592

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            ID  CK GR   A  +F +M ++    N+ TYS LIDG  +    + A  + ++ CE N
Sbjct: 593 FIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPN 652

Query: 128 ISPNIA--------GRPTEAMQLYDSMLRNGIMP 153
           +             GR  EA QL +SM + G+ P
Sbjct: 653 VDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQP 686



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +LD A ++F ++   G +P+ +TY+ +I G CS  RL+EA+ + E++    ++P   
Sbjct: 249 KNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +TI I + C  GR  +A  +  KM ++G   NV TY+ LI G  +    + A  VY +M
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKM 368

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
             + + P             + GR   A+ +++ ML +  +P+
Sbjct: 369 LADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPN 411



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++   + A+ ++ ++   GL P  +TY+ +I       R + A+ +FE +      PN
Sbjct: 352 LSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPN 411

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ ++I  FC  G +  AT +F +ML+ GP  NV+TY+ +I  YFK   M +A  + E
Sbjct: 412 TETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLE 471

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M  N +  +              G+   A  L++ M+ +GI P+
Sbjct: 472 MMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPN 516



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           ++ ++ + G+ P++ T+N +I   C+  ++ EA  +   +      P++ T+T LI   C
Sbjct: 189 VYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHC 248

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D A  MF +M++ G   N VTYS LI+G      ++ A D+ EEM +  I P + 
Sbjct: 249 KNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPD 154
                      AGR  EA++L   M + G  P+
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPN 341



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  L+ A+ +  ++ D+G+EP +  Y   I   C   R  EAV+L  K+      PN
Sbjct: 282 LCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPN 341

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LI    ++G+ + A  ++ KML  G     VTYS LI+  +     ++A  ++E
Sbjct: 342 VQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFE 401

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            M  ++  PN              G   +A  ++D ML+ G  P+
Sbjct: 402 WMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPN 446



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K+ +++ A++L   +   GL+ D  TY  +I G+    +L+ A  LF ++    + PN 
Sbjct: 458 FKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNV 517

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +I+ +    ++DDA  +F KM+E G   +  TY+ +I G+ K+  +  A +   +
Sbjct: 518 VTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGK 577

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M +  + PN+             GR + A +++  M +    P+    S+L D
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLID 630



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           + G +   G  PD  TY ++I G+C    LD A ++F+++      PNS+T++ LI+  C
Sbjct: 224 IMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLC 283

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
            EGR+++A  M  +M++KG +  V  Y+  I     +     A  +  +M +    PN+ 
Sbjct: 284 SEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQ 343

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       G+   A+ +Y  ML +G++P  +  S L +
Sbjct: 344 TYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALIN 385



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 16/150 (10%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
           G++  +GL P++ITY + I G C   R   A ++F ++      PN  T++ LID  C+E
Sbjct: 576 GKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQE 635

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---- 131
           G+ +DA     ++L+ G + NV TY+ L+ G         A  + E M +  + P+    
Sbjct: 636 GQAEDA----ERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIY 691

Query: 132 ---IAGR-----PTEAMQLYDSMLRNGIMP 153
              + G+        A++++DSM+  G  P
Sbjct: 692 RALLVGQCKNLEVESALKIFDSMVTTGFQP 721



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 16/174 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A K+F ++  R   P++ TY+++I G C   + ++A +L +       +PN
Sbjct: 597 LCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPN 652

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T L+   C +GR  +A  +   M +KG + +   Y  L+ G  K+  ++SA  +++
Sbjct: 653 VDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFD 712

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M      P +            A    +A  ++ +ML+     D ++ + L D
Sbjct: 713 SMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLD 766



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (44%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L   +  +GL+P    Y  ++ G C    ++ A+++F+ +     +P    +  LI 
Sbjct: 672 ADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALIC 731

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A CK      A  MF  ML+K   ++ V ++ L+DG  K      + ++   M   N + 
Sbjct: 732 ALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTL 791

Query: 131 NIAGRPTEAMQL 142
           N   R   A +L
Sbjct: 792 NFQTRVMLAREL 803



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 1   MLIKEC---HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +L+ +C    +++ALK+F  +   G +P +  Y  +IC  C  N   +A  +F+ +    
Sbjct: 694 LLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKH 753

Query: 58  LKPNSITFTILIDAFCKEGRMD 79
              + + +T+L+D   KEG  D
Sbjct: 754 WNSDEVVWTVLLDGLLKEGETD 775


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 18/172 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A +++ ++ ++G++PD++ +NT+I G     R  EA+++FE +      PN  T+T
Sbjct: 348 NLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYT 407

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   CK G+MD A   F +M E   + +V TY+CL+ GY  ++ M     V EEM + 
Sbjct: 408 MLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQK 467

Query: 127 NISPN----------IAGR--PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              P+          +  R  P +A ++Y  M++ G+ P      T+  YN+
Sbjct: 468 GCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEP------TIHTYNM 513



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++ F ++ +   +PD+ TY  ++ GY +  R+D    + E++T     P++ 
Sbjct: 415 KRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDAR 474

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEE 122
           T+  LI         DDA  ++ KM++KG +  + TY+ ++  YF   +N      V+EE
Sbjct: 475 TYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNYAMGCAVWEE 534

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           M    I P++             GRP EA +  + M+  G+
Sbjct: 535 MHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGM 575



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+ GQ +     PD+ +Y  ++  +C+   L EA +++ ++    +KP+ +    +I+  
Sbjct: 324 KMHGQYS-----PDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGL 378

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            +  R  +A  MF  M  KGP  NV TY+ LI  + K   M  A + +EEM E    P++
Sbjct: 379 LRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDV 438

Query: 133 A 133
           A
Sbjct: 439 A 439



 Score = 43.5 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTI 67
           D A +++ ++  +GLEP I TYN ++  Y   +R       ++E++    + P+  ++T+
Sbjct: 490 DDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTV 549

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
            I+   + GR ++A     +M+ KG  A  + Y+
Sbjct: 550 FINGHIRHGRPEEAYKYIEEMINKGMTAPQIDYN 583


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML K  +++AA K+   + + GL P++ T N +I   C   +LDEA  +FE +      P
Sbjct: 279 MLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSP 338

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  TF  LID   K+GR+DDA  ++ +ML+     NVV Y+ LI  +FK    +    +Y
Sbjct: 339 DGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMY 398

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           +EM  +  SP++            AG   +   L++ +   G +PD    S L    +++
Sbjct: 399 KEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKA 458

Query: 169 SGSQE 173
             ++E
Sbjct: 459 GFARE 463



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 95/180 (52%), Gaps = 13/180 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L  ++   G  P ++TY +++ G   ++RLDEA  LFE+     ++ N +
Sbjct: 492 KSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQV 551

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K GR+D+A ++  +M++KG   NV T++CL+DG  K++ +  A   ++ M
Sbjct: 552 IYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSM 611

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +   +PN       I G     +  +A   +  M + G+ P+ +  + +    L  SG+
Sbjct: 612 KDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMIS-GLAKSGN 670



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K        +L+  + D+G   D   YNT+I G+C   ++++A QL E++  +   P 
Sbjct: 455 LVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPT 514

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++D   K  R+D+A M+F +    G + N V YS LIDG+ K   +  A+ V E
Sbjct: 515 VVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVME 574

Query: 122 EMCENNISPNI 132
           EM +  ++PN+
Sbjct: 575 EMMQKGLTPNV 585



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+   D AL++F ++  R   P++ TYN II   C    ++ A ++ + +    L PN
Sbjct: 246 LGKKGKTDKALRIFEEMK-RDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPN 304

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T  I+ID  CK  ++D+A  +F  M  K    +  T+  LIDG  K   +  A+ +YE
Sbjct: 305 VRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYE 364

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M + +  PN+              R  +  ++Y  M+R+G  PD +LL+T  D
Sbjct: 365 RMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMD 418



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 13/180 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K F ++   GL PD +TY +++   C  NRLDEAV++FE++   +  P +  +  
Sbjct: 147 VDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNT 206

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +   G+ D+A  +  +   KG   +VV Y+C++    K      A  ++EEM + +
Sbjct: 207 MIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEM-KRD 265

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
             PN+            AG    A ++ D+M   G+ P+   ++ + D   ++    E C
Sbjct: 266 AMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEAC 325



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  +  ++  +GL P++ T+N ++ G      ++EA+  F+ +  ++  PN IT+ 
Sbjct: 565 RVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYC 624

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+  CK  + + A + + +M ++G K N +TY+ +I G  KS N+  A  ++E    +
Sbjct: 625 ILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRAS 684

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNG 150
              P+            IA R  +A QL++     G
Sbjct: 685 GGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKG 720



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   LD A+++F Q+      P    YNT+I GY S  + DEA  L E+       P
Sbjct: 175 VLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIP 234

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + +  ++    K+G+ D A  +F +M ++    N+ TY+ +I    K+ N+++AF V 
Sbjct: 235 SVVAYNCILTCLGKKGKTDKALRIFEEM-KRDAMPNLPTYNIIIGMLCKAGNVEAAFKVR 293

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + M E  + PN+            A +  EA  +++ M      PDG    +L D
Sbjct: 294 DAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLID 348



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 13/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +DAAL L  ++     + DI+ YN  I  +  + ++D A + F ++    L P+ +
Sbjct: 108 REGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDV 167

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T ++   CK  R+D+A  +F +M +         Y+ +I GY  +     A+ + E  
Sbjct: 168 TYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQ 227

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
                 P++             G+  +A+++++ M R+  MP+
Sbjct: 228 RAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDA-MPN 269



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ AL  F  + D    P+ ITY  +I G C + + ++A   ++++    LKPN
Sbjct: 595 LVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPN 654

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T +I    K G +  A+ +F +    G   +  +Y+ +I+G   +     A+ ++E
Sbjct: 655 TITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFE 714

Query: 122 E 122
           E
Sbjct: 715 E 715



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L LF Q+ + G E ++    T+I  +    R+D A+ L +++       + + + + 
Sbjct: 78  DRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVC 137

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K G++D A   F +M   G   + VTY+ ++    K+  +  A +++E+M +N  
Sbjct: 138 IDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQ 197

Query: 129 SP------------NIAGRPTEAMQLYDSMLRNGIMP 153
            P              AG+  EA  L +     G +P
Sbjct: 198 VPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIP 234



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++ ++   G  PD++  NT +         ++   LFE++      P++ +++ILI + 
Sbjct: 396 KMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSL 455

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G   +   ++  M ++G   +   Y+ +IDG+ KS  +  A+ + EEM      P +
Sbjct: 456 VKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTV 515

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         R  EA  L++    NGI  + ++ S+L D
Sbjct: 516 VTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLID 558



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 12/163 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   L  A  L   +      P    Y T+I     +   D  + LF ++  +  + N 
Sbjct: 37  VKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNV 96

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
              T LI  F +EGR+D A  +  +M      A++V Y+  ID + K   +  A+  + E
Sbjct: 97  HLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHE 156

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           M  N + P+             A R  EA+++++ M +N  +P
Sbjct: 157 MKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVP 199



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A   + ++  +GL+P+ ITY  +I G      + +A  LFE+       P+
Sbjct: 630 LCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPD 689

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           S ++  +I+      R  DA  +F +   KG   +  T   L+D   K++ ++ A
Sbjct: 690 SASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQA 744


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AA   F ++  RGL  D +TY  +I G C    L EA ++ +++    L  +++T+T+
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK G+M +A ++ +KM++K    NVVTY+ L DG  K  ++ +A ++  EMC   
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI            AG   +AM+    M   G+ PD    +T+
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTI 536



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A++    + + GL+PD+ TY TII   C    LD A  L +++    +KP 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +L++ FC  GR++    +   MLEK    N  TY+ L+  Y   +NMKS  ++Y+
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 122 EMCENNISPN 131
            M    + PN
Sbjct: 625 GMLSQEVVPN 634



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A ++  ++ D+GL+ D +TY  +I GYC + ++ EA  +  K+   ++ PN
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L D  CK+G +  A  +  +M  KG + N+ TY+ LI+G  K+ N++ A     
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E  + P++    T             A  L   ML  GI P      T+  YN+  +
Sbjct: 520 DMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP------TIVTYNVLMN 573

Query: 170 G 170
           G
Sbjct: 574 G 574



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  + AA +L  ++  +GLE +I TYN++I G C    L++A++    +    LKP+
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T +I A C+   +D A  +  +ML+KG K  +VTY+ L++G+  S  ++    + E
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            M E NI PN            I        ++Y  ML   ++P+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  L  ++ D+G++P I+TYN ++ G+C   R++   +L E +    + PN+ T+  
Sbjct: 546 LDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNS 605

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +C E  M   T ++  ML +    N  TY+ LI G+ K++NMK A   + EM E  
Sbjct: 606 LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 128 IS------------PNIAGRPTEAMQLYDSMLR 148
                          N   + TEA +L++ M +
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMRK 698



 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L  E  +  A+++   +   G+  D   + T++ G+C    L  A   F+++    L  
Sbjct: 329 LLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAA 388

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T LI+  C+ G + +A  +  +M +KG   + VTY+ LIDGY K   M  AF V+
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 121 EEMCENNISPNI 132
            +M +  ++PN+
Sbjct: 449 NKMVQKRVTPNV 460



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+KL  ++  RGLE + + Y ++I   C   ++ +AV++ E +    +  ++  FT 
Sbjct: 301 LETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTT 360

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++  FC++G +  A   F +M ++G  A+ VTY+ LI+G  ++  +K A  V +EM +  
Sbjct: 361 VMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKG 420

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  +              G+ TEA  +++ M++  + P+ +  + L+D
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSD 468



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 23/160 (14%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  +L   G+ P   + N ++C       LDEAVQLF++L     + N+ ++ IL+ A C
Sbjct: 213 LLLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELP----EKNTCSYNILLKALC 264

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
             GR+ DA  +F +M       +VVTY  ++ GY     +++A  +  EM    +  N  
Sbjct: 265 TAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV 321

Query: 132 -----IA-----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                IA     G+ ++A+++ + M+ +G++ D  + +T+
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTV 361



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 62/122 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   +L   + ++ + P+  TYN+++  YC    +    ++++ +   ++ PN  T+ I
Sbjct: 581 VEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNI 640

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK   M +A    S+M+EKG +    +Y+ LI    K +    A  ++E+M +  
Sbjct: 641 LIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKER 700

Query: 128 IS 129
           ++
Sbjct: 701 LT 702



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 69/144 (47%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E ++ +  +++  +  + + P+  TYN +I G+C    + EA+    ++     +  + +
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS 672

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI    K+ +  +A  +F KM ++   A    Y+  ID  F   N++S   + +E+ 
Sbjct: 673 YNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732

Query: 125 ENNISPNIAGRPTEAMQLYDSMLR 148
           E  +  +IA    +  + + S++R
Sbjct: 733 EVTLVKSIADTDDDFAEEHISIMR 756


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F  +   G+ P++ +YN +I G C   R+DEA+ L  ++    + P+++T+  LID
Sbjct: 237 AKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLID 296

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+  A  + ++M  +G  A+VVTY+ L+D   K+QN+  A  ++ +M E  I P
Sbjct: 297 GLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQP 356

Query: 131 NI------------AGRPTEAMQLYDSMLRNG 150
            +             GR   A +L+  +L  G
Sbjct: 357 TMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 388



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+KL   + DR   P+++ Y+ II G C    ++EA  L+ ++   ++ PN IT+  LI 
Sbjct: 134 AIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLIC 193

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           AFC  G++  A  +  +M+ K    +V T+S LID   K    K+A  ++  M +  ++P
Sbjct: 194 AFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNP 251

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+              R  EAM L   ML   ++PD +  ++L D
Sbjct: 252 NVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLID 296



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ L  ++  + + PD +TYN++I G C   R+  A+ L  ++       + +T+T 
Sbjct: 269 VDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTS 328

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA CK   +D AT +F KM E+G +  + TY+ LIDG  K   +K+A ++++ +    
Sbjct: 329 LLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 388

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
              ++             G   EA+ +   M  NG +P+ +
Sbjct: 389 CCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAV 429



 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 15/173 (8%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CHL     +  L G++   G  P+ IT+ T++ G C    + + +   +K+     + N 
Sbjct: 56  CHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQ 115

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  L++  CK G    A  +   + ++  + NVV YS +IDG  K + +  A+D+Y E
Sbjct: 116 VSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSE 175

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           M    I PN+            AG+   A  L   M+   I PD    S L D
Sbjct: 176 MDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILID 228



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 63/122 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +LD A  LF ++ +RG++P + TY  +I G C   RL  A +LF+ L       +
Sbjct: 333 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCID 392

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I   CKEG  D+A  + SKM + G   N VT+  +I   F+      A  +  
Sbjct: 393 VWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLH 452

Query: 122 EM 123
           EM
Sbjct: 453 EM 454



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A +LF  L  +G   D+ TY  +I G C     DEA+ +  K+      PN
Sbjct: 368 LCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPN 427

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++TF I+I +  ++   D A  +  +M+ KG
Sbjct: 428 AVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 458



 Score = 42.7 bits (99), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 49/105 (46%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           II +N I+     L      + L +++    ++ N +T +ILI+ FC  G+M  +  +  
Sbjct: 10  IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLG 69

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           K+L+ G   N +T++ L+ G      +K     ++++       N
Sbjct: 70  KILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTN 114


>gi|297726211|ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group]
 gi|255678284|dbj|BAH94197.1| Os08g0248500 [Oryza sativa Japonica Group]
          Length = 1487

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 48/197 (24%)

Query: 24   EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
            E D+ITY+T+I GYC   ++DEA++L   +  V LKP+++T++ LI+ +CK  RM++A  
Sbjct: 1204 EVDVITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALS 1263

Query: 84   MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY-------------------EEMC 124
            +F +M+  G   N++TY+ ++ G F++   ++A ++Y                   + +C
Sbjct: 1264 LFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQGLC 1323

Query: 125  ENNISP---------------------NI-------AGRPTEAMQLYDSMLRNGIMPDGL 156
            +NN++                      NI       +GR  E+  L+ ++  NG+ PD +
Sbjct: 1324 KNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAALSANGLAPD-V 1382

Query: 157  LLSTLADYNLQSSGSQE 173
            +  TL   NL   G  E
Sbjct: 1383 VTYTLMIENLIEDGLLE 1399



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 70/122 (57%)

Query: 10   AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            AA +++ ++  RG++ +I T N ++ G C  N   EA+Q+F+ L  + +K  + TF I+I
Sbjct: 1295 AAKEIYVRIIKRGIQLEISTCNIVLQGLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMI 1354

Query: 70   DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             +  + GR D++  +F+ +   G   +VVTY+ +I+   +   ++ + +++  M +N   
Sbjct: 1355 GSLLRSGRKDESKDLFAALSANGLAPDVVTYTLMIENLIEDGLLEESDNLFLSMEKNGCV 1414

Query: 130  PN 131
            PN
Sbjct: 1415 PN 1416



 Score = 40.8 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF---EKLTCVQL 58
            L++    D +  LF  L+  GL PD++TY  +I        L+E+  LF   EK  CV  
Sbjct: 1357 LLRSGRKDESKDLFAALSANGLAPDVVTYTLMIENLIEDGLLEESDNLFLSMEKNGCV-- 1414

Query: 59   KPNSITFTILIDAFCKEGRMDDATMMFSKM 88
             PNS     ++    ++G +  A +  SK+
Sbjct: 1415 -PNSRMLNCIVRKLLQKGEIGRAGVYLSKI 1443


>gi|125570756|gb|EAZ12271.1| hypothetical protein OsJ_02159 [Oryza sativa Japonica Group]
          Length = 596

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 68/107 (63%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           +L ++G EPD +TYNT++ GYC   RL +A+ LF+ +   +++P+ ++ T+++DA CK G
Sbjct: 235 ELEEQGFEPDGVTYNTLLSGYCRRGRLQDALHLFDVMPYRRVQPDLVSHTVVMDALCKAG 294

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           R+ DA  MF +M++ G   + V YS LI GY     ++ A  +  EM
Sbjct: 295 RVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGRLREARFLLMEM 341



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ P+  T+N ++   C     + A    E+L     +P+ +T+  L+  +C+ GR+ DA
Sbjct: 205 GVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDGVTYNTLLSGYCRRGRLQDA 264

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             +F  M  +  + ++V+++ ++D   K+  ++ A  +++ M ++ +SP+          
Sbjct: 265 LHLFDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAG 324

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
               GR  EA  L   M+  G   +G  L  + + +++ S
Sbjct: 325 YCNEGRLREARFLLMEMVGCGFSSEGFALKVVVESHVKFS 364



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL LF  +  R ++PD++++  ++   C   R+ +A ++F+++    L P+++ +++
Sbjct: 261 LQDALHLFDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSV 320

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C EGR+ +A  +  +M+  G  +       +++ + K   + +  ++   + ++ 
Sbjct: 321 LIAGYCNEGRLREARFLLMEMVGCGFSSEGFALKVVVESHVKFSKLLTCLNMVAPIRKHG 380

Query: 128 IS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           +  P+ +            RP  A  L   M+ +G  P      +LA YN+
Sbjct: 381 VVIPSQSYSCLIGALCEDMRPNAARGLLHWMIEDGHSP------SLAIYNM 425



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 47/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------------- 46
           L K   +  A ++F ++   GL PD + Y+ +I GYC+  RL EA               
Sbjct: 290 LCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGRLREARFLLMEMVGCGFSSE 349

Query: 47  -----------VQLFEKLTCVQLKP---------NSITFTILIDAFCKEGRMDDATMMFS 86
                      V+  + LTC+ +            S +++ LI A C++ R + A  +  
Sbjct: 350 GFALKVVVESHVKFSKLLTCLNMVAPIRKHGVVIPSQSYSCLIGALCEDMRPNAARGLLH 409

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+E G   ++  Y+ +I+ + +   ++ A DV  EM    +  +              G
Sbjct: 410 WMIEDGHSPSLAIYNMIIECFCQCDIVEEALDVKVEMISREVRLDFNTYRALITCFCRLG 469

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           R  +   +   M+ +G  P+  + S L
Sbjct: 470 RSLDGESIMAEMIESGFQPNEAICSAL 496



 Score = 52.8 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++   +AA  L   + + G  P +  YN II  +C  + ++EA+ +  ++   +++ +
Sbjct: 395 LCEDMRPNAARGLLHWMIEDGHSPSLAIYNMIIECFCQCDIVEEALDVKVEMISREVRLD 454

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
             T+  LI  FC+ GR  D   + ++M+E G + N    S L+ G+ K   +  A     
Sbjct: 455 FNTYRALITCFCRLGRSLDGESIMAEMIESGFQPNEAICSALVCGFCKEGALNRAELILR 514

Query: 117 -----FDVY---------EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD-----GLL 157
                F V+            CE   S        E+++L + ML  G +P+      L+
Sbjct: 515 AFVLDFHVHCNESYNALMRAYCETTSS-------KESLELQNRMLELGFVPNSETCRSLI 567

Query: 158 LSTLADYNLQSSGSQEHCI 176
           L      +L SS     CI
Sbjct: 568 LGLSKSIDLVSSDDGFSCI 586


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AA   F ++  RGL  D +TY  +I G C    L EA ++ +++    L  +++T+T+
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK G+M +A ++ +KM++K    NVVTY+ L DG  K  ++ +A ++  EMC   
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI            AG   +AM+    M   G+ PD    +T+
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTI 536



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A++    + + GL+PD+ TY TII   C    LD A  L +++    +KP 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +L++ FC  GR++    +   MLEK    N  TY+ L+  Y   +NMKS  ++Y+
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 122 EMCENNISPN 131
            M    + PN
Sbjct: 625 GMLSQEVVPN 634



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A ++  ++ D+GL+ D +TY  +I GYC + ++ EA  +  K+   ++ PN
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L D  CK+G +  A  +  +M  KG + N+ TY+ LI+G  K+ N++ A     
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E  + P++    T             A  L   ML  GI P      T+  YN+  +
Sbjct: 520 DMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP------TIVTYNVLMN 573

Query: 170 G 170
           G
Sbjct: 574 G 574



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  + AA +L  ++  +GLE +I TYN++I G C    L++A++    +    LKP+
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T +I A C+   +D A  +  +ML+KG K  +VTY+ L++G+  S  ++    + E
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            M E NI PN            I        ++Y  ML   ++P+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  L  ++ D+G++P I+TYN ++ G+C   R++   +L E +    + PN+ T+  
Sbjct: 546 LDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNS 605

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +C E  M   T ++  ML +    N  TY+ LI G+ K++NMK A   + EM E  
Sbjct: 606 LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 128 IS------------PNIAGRPTEAMQLYDSMLRNGI 151
                          N   + TEA +L++ M ++ +
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRL 701



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L  E  +  A+++   +   G+  D   + T++ G+C    L  A   F+++    L  
Sbjct: 329 LLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAA 388

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T LI+  C+ G + +A  +  +M +KG   + VTY+ LIDGY K   M  AF V+
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 121 EEMCENNISPNI 132
            +M +  ++PN+
Sbjct: 449 NKMVQKRVTPNV 460



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+KL  ++  RGLE + + Y ++I   C   ++ +AV++ E +    +  ++  FT 
Sbjct: 301 LETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTT 360

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++  FC++G +  A   F +M ++G  A+ VTY+ LI+G  ++  +K A  V +EM +  
Sbjct: 361 VMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKG 420

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  +              G+ TEA  +++ M++  + P+ +  + L+D
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSD 468



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 23/160 (14%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  +L   G+ P   + N ++C       LDEAVQLF++L     + N+ ++ IL+ A C
Sbjct: 213 LLLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELP----EKNTCSYNILLKALC 264

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
             GR+ DA  +F +M       +VVTY  ++ GY     +++A  +  EM    +  N  
Sbjct: 265 TAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV 321

Query: 132 -----IA-----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                IA     G+ ++A+++ + M+ +G++ D  + +T+
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTV 361



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 63/122 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   +L   + ++ + P+  TYN+++  YC    +    ++++ +   ++ PN  T+ I
Sbjct: 581 VEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNI 640

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK   M +A    S+M+EKG +    +Y+ LI    K +    A  ++E+M ++ 
Sbjct: 641 LIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDR 700

Query: 128 IS 129
           ++
Sbjct: 701 LT 702



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 68/144 (47%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E ++ +  +++  +  + + P+  TYN +I G+C    + EA+    ++     +  + +
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS 672

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI    K+ +  +A  +F KM +    A    Y+  ID  F   N++S   + +E+ 
Sbjct: 673 YNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732

Query: 125 ENNISPNIAGRPTEAMQLYDSMLR 148
           E  +  +IA    +  + + S++R
Sbjct: 733 EVTLVKSIADTDDDFAEEHISIMR 756


>gi|125526348|gb|EAY74462.1| hypothetical protein OsI_02350 [Oryza sativa Indica Group]
          Length = 596

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 68/107 (63%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           +L ++G EPD +TYNT++ GYC   RL +A+ LF+ +   +++P+ ++ T+++DA CK G
Sbjct: 235 ELEEQGFEPDGVTYNTLLSGYCRRGRLQDALHLFDVMPYRRVQPDLVSHTVVMDALCKAG 294

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           R+ DA  MF +M++ G   + V YS LI GY     ++ A  +  EM
Sbjct: 295 RVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGRLREARFLLMEM 341



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ P+  T+N ++   C     + A    E+L     +P+ +T+  L+  +C+ GR+ DA
Sbjct: 205 GVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDGVTYNTLLSGYCRRGRLQDA 264

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             +F  M  +  + ++V+++ ++D   K+  ++ A  +++ M ++ +SP+          
Sbjct: 265 LHLFDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAG 324

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
               GR  EA  L   M+  G   +G  L  + + +++ S
Sbjct: 325 YCNEGRLREARFLLMEMVGCGFSSEGFALKVVVESHVKFS 364



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL LF  +  R ++PD++++  ++   C   R+ +A ++F+++    L P+++ +++
Sbjct: 261 LQDALHLFDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSV 320

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C EGR+ +A  +  +M+  G  +       +++ + K   + +  ++   + ++ 
Sbjct: 321 LIAGYCNEGRLREARFLLMEMVGCGFSSEGFALKVVVESHVKFSKLLTCLNMVAPIRKHG 380

Query: 128 IS-PNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           +  P+ +            RP  A  L   M+ +G  P      +LA YN+
Sbjct: 381 VVIPSQSYSCLIGALCEDMRPNAARGLLHWMIEDGHSP------SLAIYNM 425



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 47/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------------- 46
           L K   +  A ++F ++   GL PD + Y+ +I GYC+  RL EA               
Sbjct: 290 LCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGRLREARFLLMEMVGCGFSSE 349

Query: 47  -----------VQLFEKLTCVQLKP---------NSITFTILIDAFCKEGRMDDATMMFS 86
                      V+  + LTC+ +            S +++ LI A C++ R + A  +  
Sbjct: 350 GFALKVVVESHVKFSKLLTCLNMVAPIRKHGVVIPSQSYSCLIGALCEDMRPNAARGLLH 409

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+E G   ++  Y+ +I+ + +   ++ A DV  EM    +  +              G
Sbjct: 410 WMIEDGHSPSLAIYNMIIECFCQCDIVEEALDVKVEMISREVRLDFNTYRALITCFCRLG 469

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           R  +   +   M+ +G  P+  + S L
Sbjct: 470 RSLDGELIMAEMIESGFQPNEAICSAL 496



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 31/199 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++   +AA  L   + + G  P +  YN II  +C  + ++EA+ +  ++   +++ +
Sbjct: 395 LCEDMRPNAARGLLHWMIEDGHSPSLAIYNMIIECFCQCDIVEEALDVKVEMISREVRLD 454

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
             T+  LI  FC+ GR  D  ++ ++M+E G + N    S L+ G+ K   +  A     
Sbjct: 455 FNTYRALITCFCRLGRSLDGELIMAEMIESGFQPNEAICSALVCGFCKEGALNRAELILR 514

Query: 117 -----FDVY---------EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD-----GLL 157
                F V+            CE   S        E+++L + ML  G +P+      L+
Sbjct: 515 AFVLDFHVHCNESYNALMRAYCETTSS-------KESLELQNRMLELGFVPNSETCRSLI 567

Query: 158 LSTLADYNLQSSGSQEHCI 176
           L      +L SS     CI
Sbjct: 568 LGLSKSIDLVSSDDGFSCI 586


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L AA   F ++  RGL  D +TY  +I G C    L EA ++ +++    L  +++T+T+
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CK G+M +A ++ +KM++K    NVVTY+ L DG  K  ++ +A ++  EMC   
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  NI            AG   +AM+    M   G+ PD    +T+
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTI 536



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 70/130 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ A++    + + GL+PD+ TY TII   C    LD A  L +++    +KP 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +L++ FC  GR++    +   MLEK    N  TY+ L+  Y   +NMKS  ++Y+
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 122 EMCENNISPN 131
            M    + PN
Sbjct: 625 GMLSQEVVPN 634



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A ++  ++ D+GL+ D +TY  +I GYC + ++ EA  +  K+   ++ PN
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T L D  CK+G +  A  +  +M  KG + N+ TY+ LI+G  K+ N++ A     
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E  + P++    T             A  L   ML  GI P      T+  YN+  +
Sbjct: 520 DMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP------TIVTYNVLMN 573

Query: 170 G 170
           G
Sbjct: 574 G 574



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  + AA +L  ++  +GLE +I TYN++I G C    L++A++    +    LKP+
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T +I A C+   +D A  +  +ML+KG K  +VTY+ L++G+  S  ++    + E
Sbjct: 530 VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            M E NI PN            I        ++Y  ML   ++P+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  L  ++ D+G++P I+TYN ++ G+C   R++   +L E +    + PN+ T+  
Sbjct: 546 LDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNS 605

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +C E  M   T ++  ML +    N  TY+ LI G+ K++NMK A   + EM E  
Sbjct: 606 LMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 128 IS------------PNIAGRPTEAMQLYDSMLR 148
                          N   + TEA +L++ M +
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMRK 698



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L  E  +  A+++   +   G+  D   + T++ G+C    L  A   F+++    L  
Sbjct: 329 LLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAA 388

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T LI+  C+ G + +A  +  +M +KG   + VTY+ LIDGY K   M  AF V+
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 121 EEMCENNISPNI 132
            +M +  ++PN+
Sbjct: 449 NKMVQKRVTPNV 460



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A+KL  ++  RGLE + + Y ++I   C   ++ +AV++ E +    +  ++  FT 
Sbjct: 301 LETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTT 360

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++  FC++G +  A   F +M ++G  A+ VTY+ LI+G  ++  +K A  V +EM +  
Sbjct: 361 VMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKG 420

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  +              G+ TEA  +++ M++  + P+ +  + L+D
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSD 468



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 23/160 (14%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  +L   G+ P   + N ++C       LDEAVQLF++L     + N+ ++ IL+ A C
Sbjct: 213 LLLRLRQYGISPSPESCNAVLCRL----PLDEAVQLFQELP----EKNTCSYNILLKALC 264

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
             GR+ DA  +F +M       +VVTY  ++ GY     +++A  +  EM    +  N  
Sbjct: 265 TAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV 321

Query: 132 -----IA-----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                IA     G+ ++A+++ + M+ +G++ D  + +T+
Sbjct: 322 AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTV 361



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 62/122 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++   +L   + ++ + P+  TYN+++  YC    +    ++++ +   ++ PN  T+ I
Sbjct: 581 VEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNI 640

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK   M +A    S+M+EKG +    +Y+ LI    K +    A  ++E+M +  
Sbjct: 641 LIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKER 700

Query: 128 IS 129
           ++
Sbjct: 701 LT 702



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 62/129 (48%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E ++ +  +++  +  + + P+  TYN +I G+C    + EA+    ++     +  + +
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS 672

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  LI    K+ +  +A  +F KM ++   A    Y+  ID  F   N++S   + +E+ 
Sbjct: 673 YNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732

Query: 125 ENNISPNIA 133
           E  +  +IA
Sbjct: 733 EVTLVKSIA 741


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  ALKL  ++ DRG  PDIITY++++   C  +++D+A+ L + L    ++PN
Sbjct: 250 LCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPN 309

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+TILID  CK GR++DA  +F  +L KG    V TY+ +I G+        A  +  
Sbjct: 310 MYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLS 369

Query: 122 EMCENNISPN 131
           +M +N+  PN
Sbjct: 370 KMKDNSCFPN 379



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +F  ++ RG+  ++ +YN +I G+C +   DEA+ LFE++ C +L P+ +T+  
Sbjct: 186 VNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNS 245

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+  CK G++  A  +  +M ++G   +++TYS L+D   K+  +  A  + + + +  
Sbjct: 246 LINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQG 305

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNG 150
           I PN+             GR  +A  +++ +L  G
Sbjct: 306 IRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 340



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 12/160 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ LF ++  R L PD++TYN++I G C   ++  A++L +++      P+ IT++ L
Sbjct: 222 DEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSL 281

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN-- 126
           +DA CK  ++D A  +   + ++G + N+ TY+ LIDG  K   ++ A +++E++     
Sbjct: 282 LDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGY 341

Query: 127 NISPNI----------AGRPTEAMQLYDSMLRNGIMPDGL 156
           NI+ N            G   EA+ L   M  N   P+ L
Sbjct: 342 NITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNAL 381



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ L   L D+G+ P++ TY  +I G C   RL++A  +FE L        
Sbjct: 285 LCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNIT 344

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T++I  FC +G  D+A  + SKM +     N +TY  +I   F +     A ++  
Sbjct: 345 VNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRSLFDNDENDKAENLLR 404

Query: 122 EM 123
           EM
Sbjct: 405 EM 406



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A  +F  L  +G    + TY  +I G+C+    DEA+ L  K+      PN
Sbjct: 320 LCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPN 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           ++T+ I+I +       D A  +  +M+ +G
Sbjct: 380 ALTYEIIIRSLFDNDENDKAENLLREMITRG 410


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L  A  L   +  +GL P+  TYN ++CGYC L  L EA ++ E +T   L P 
Sbjct: 258 LLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPT 317

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +L++ FC +G++D+A  +  +M +     +VVTY+ LIDG  + ++    + + E
Sbjct: 318 VWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIE 377

Query: 122 EMCE-----NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +     N ++ NI        G  TEA    D M  NG+ PD +  +TL
Sbjct: 378 EMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTL 429



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++  A     ++ + GL PD +TYNT+I  YC   ++ +A ++ +++T   LK ++ 
Sbjct: 400 KKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTW 459

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T   ++   C E ++D+A  +     ++G   + V+Y  LI GYFK +    A ++++EM
Sbjct: 460 TLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEM 519

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
            E  I P+       I G     +  +A+   + ML NG++PD
Sbjct: 520 KERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPD 562



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+    ++ + GL PD  TYN II G+C    +++A Q   ++     KP+  T  I
Sbjct: 544 VDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNI 603

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C+EG ++ A  +F+ ++ KG   +VVTY+ +I    K    ++A+D+  EM    
Sbjct: 604 LLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKK 663

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + P+             AGR  EA +    M+ +GI+ D
Sbjct: 664 LGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHD 702



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 63/116 (54%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++  ++    + PD++TYNT+I G        E   L E++    +K N++T+ I
Sbjct: 334 IDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNI 393

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++   CK+G M +AT    KM E G   + VTY+ LI  Y K+  M  AF + +EM
Sbjct: 394 ILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEM 449



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  LD A  L    + RG   D ++Y  +I GY    + D A+ L++++   Q+ P++IT
Sbjct: 471 EKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTIT 530

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +I   C+  ++D A    ++MLE G   +  TY+ +I G+    N++ AF  + EM 
Sbjct: 531 YNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMI 590

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           EN   P++             G   +A++L+++++  G
Sbjct: 591 ENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKG 628



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ P+  ++N +I GYC  +++ +A+    K++     P+++++  ++DA  K   + +A
Sbjct: 208 GVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEA 267

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             +   M  KG   N  TY+ L+ GY +   +K A  V E M  NN+ P +         
Sbjct: 268 RDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNG 327

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
               G+  EA ++ D M +  ++PD +  +TL D   Q   S E
Sbjct: 328 FCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSE 371



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  L+ ALKLF  L  +G + D++TYNTII   C   + + A  L  ++   +L P+
Sbjct: 608 LCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPD 667

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+ ++I A    GR+ +A     KM+E G
Sbjct: 668 QYTYKVIIAALTDAGRIKEAEEFTLKMVESG 698



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 63/124 (50%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E +++ A +   ++ +   +PD+ T N ++ G C    L++A++LF  L       + +T
Sbjct: 576 EGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVT 635

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +  +I + CKEG+ ++A  + ++M  K    +  TY  +I     +  +K A +   +M 
Sbjct: 636 YNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMV 695

Query: 125 ENNI 128
           E+ I
Sbjct: 696 ESGI 699



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 56/197 (28%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT------------------- 64
           EP     +T I  Y  +++   A Q+F K+  +  +PN +T                   
Sbjct: 137 EPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILL 196

Query: 65  -------------------FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
                              F ILI  +C E ++ DA    +KM E G   + V+Y+ ++D
Sbjct: 197 ARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILD 256

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
              K + ++ A D+  +M    +SPN              G   EA ++ + M RN ++P
Sbjct: 257 ALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLP 316

Query: 154 DGLLLSTLADYNLQSSG 170
                 T+  YN+  +G
Sbjct: 317 ------TVWTYNMLVNG 327


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 18/172 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A +++ ++ ++G++PD++ +NT+I G     R  EAV++FE +      PN  T+T
Sbjct: 344 NLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYT 403

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   CK G+MD A   F +M E   + +V TY+CL+ GY  ++ M     V EEM + 
Sbjct: 404 MLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQK 463

Query: 127 NISPN----------IAGR--PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              P+          +  R  P +A ++Y  M++ G+ P      T+  YN+
Sbjct: 464 GCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDP------TIHTYNM 509



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A++ F ++ +   +PD+ TY  ++ GY +  R+D    + E++T     P++ 
Sbjct: 411 KRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDAR 470

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEE 122
           T+  LI         DDA  ++ KM++KG    + TY+ ++  YF   +N      V+EE
Sbjct: 471 TYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDRNYAMGCAVWEE 530

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           M    I P++             GRP EA +  + M+  G+
Sbjct: 531 MHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGM 571



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K+ GQ +     PD+ +Y  ++  +C+   L EA +++ ++    +KP+ +    +I+  
Sbjct: 320 KMLGQYS-----PDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGL 374

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            +  R  +A  MF  M  KGP  NV TY+ LI  + K   M  A + +EEM E    P++
Sbjct: 375 LRGQRQHEAVKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDV 434

Query: 133 A 133
           A
Sbjct: 435 A 435



 Score = 41.6 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTI 67
           D A +++ ++  +GL+P I TYN ++  Y   +R       ++E++    + P+  ++T+
Sbjct: 486 DDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTV 545

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKA 95
            I    + GR ++A     +M+ KG KA
Sbjct: 546 FISGHIRHGRPEEAYKYIEEMINKGMKA 573



 Score = 38.9 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 13/137 (9%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89
           +   I  + +   +  AV +FE +          +F  L+ A   EG   +A  +F KML
Sbjct: 263 FKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKML 322

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
            +    ++ +Y+ L+  +  ++N+  A  V+ EM E  + P++              R  
Sbjct: 323 GQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQH 381

Query: 138 EAMQLYDSMLRNGIMPD 154
           EA+++++ M   G  P+
Sbjct: 382 EAVKMFELMKAKGPPPN 398


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 78/125 (62%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +LF  + +RG + DII YN ++ GYC  N++ EA +LF  +     +P++IT+TI
Sbjct: 264 VDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTI 323

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +C   ++D+A  +F  M+E+G   +V +Y+ LI GY K + +  A ++ E+M   N
Sbjct: 324 LMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKN 383

Query: 128 ISPNI 132
           + PNI
Sbjct: 384 LVPNI 388



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  LF  + +RGL PD+ +YN +I GYC   R+ EA+ L E +    L PN IT+  
Sbjct: 334 VDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNS 393

Query: 68  LIDAFCKEGRMDDATMMFSKMLE-KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-E 125
           ++D  CK G + DA  +  +M     P  +V TY+ L++   + + ++ A   ++ +  E
Sbjct: 394 VVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFE 453

Query: 126 NNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + +PN+              R  EA+ L++ M    ++PD +  + L D
Sbjct: 454 RSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLD 503



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 66/113 (58%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KLF  + +RG +PD ITY  ++ GYC ++++DEA  LF  +    L P+  ++ ILI 
Sbjct: 302 ARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIK 361

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +CK  R+ +A  +   M  K    N++TY+ ++DG  KS  +  A+ + +EM
Sbjct: 362 GYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEM 414



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 14/178 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ LF ++ D    P I+ +  I+     +     A+ L+  +    + P ++TF I
Sbjct: 35  IDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNI 94

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           LI+ FC  G+MD A  +  K+L+ G + NVVT++ L+ G+  +  M  A  +Y+EM    
Sbjct: 95  LINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARR 154

Query: 126 ------------NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
                       N +  +  G+P  A+QL   M    ++   L++     + L   G+
Sbjct: 155 IRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGN 212



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 96/197 (48%), Gaps = 28/197 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICG----------------YCSLNRLDE 45
           L K+ +++ A  L  ++  +G+ PDI TY+++I G                +C  N++DE
Sbjct: 207 LCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDE 266

Query: 46  AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           A +LF  +     + + I + IL++ +C   ++ +A  +F  M+E+G + + +TY+ L+ 
Sbjct: 267 ARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMH 326

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMP 153
           GY     +  A +++  M E  + P++              R  EAM L + M    ++P
Sbjct: 327 GYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVP 386

Query: 154 DGLLLSTLADYNLQSSG 170
           + +  +++ D   +S G
Sbjct: 387 NIITYNSVVDGLCKSGG 403



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 13/143 (9%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCKEGRMDDATM 83
           PD+ TYN ++   C +  +++A+  F+ L   +   PN  ++ ILI   CK  R+D+A  
Sbjct: 422 PDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAIN 481

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F+ M  K    ++VTY+ L+D  F  Q +  A  +  ++ +  ISPN+           
Sbjct: 482 LFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLH 541

Query: 133 -AGRPTEAMQLYDSMLRNGIMPD 154
             GRP  A ++   +   G  PD
Sbjct: 542 KGGRPKTAQKISLYLSIRGYHPD 564



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 5   ECHLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           EC ++ A+  F  L  +R   P++ +YN +I G C   RLDEA+ LF  +    L P+ +
Sbjct: 438 EC-VEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIV 496

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           T+ IL+DA     ++D A  +  +++++G   N+ TY+ LI+G  K    K+A
Sbjct: 497 TYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTA 549



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 16/163 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCS--LNRLDEAVQLFEKLTCVQL-KPNSITFTI 67
           AL ++ ++  R +  D + Y T+I G C   + +   AVQL +K+   QL KPN I +  
Sbjct: 143 ALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNT 202

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   CK+G +++A ++ SKM+ +G   ++ TYS LI G  ++   K    +    C NN
Sbjct: 203 VVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNN 262

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
                  +  EA +L++ M+  G   D      + +YN+  +G
Sbjct: 263 -------KVDEARELFNVMIERGEQHD------IINYNILMNG 292



 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 50/97 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A+ LF  +  + L PDI+TYN ++    +  +LD+A+ L  ++    + PN  
Sbjct: 472 KNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLR 531

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           T+ ILI+   K GR   A  +   +  +G   +V TY
Sbjct: 532 TYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTY 568


>gi|357119779|ref|XP_003561611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Brachypodium distachyon]
          Length = 547

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A+ +F  +   G+E D+ TYNT+I G C + RL EA++++++L    L+P   TFT
Sbjct: 359 RVDEAISVFEGMVTEGIEHDVFTYNTLIQGLCKVGRLAEAIRMYQRLLSSGLEPTVSTFT 418

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  C+EG++D A  +F  M  KG +  V +   +I+G+ K++    A      M ++
Sbjct: 419 PLIDTMCEEGQVDHAVELFRLMQAKGFEPLVRSNDSVINGFCKARRADDAMAWLAGMLKS 478

Query: 127 NISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+ P            + + R  +A+ + ++ML++G   D L  + L D
Sbjct: 479 NLKPQKQTFNSLLELLSTSERVDDALLILNTMLKSGFGLDSLPCTILVD 527



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K    D A K++G++  +G +   ++ N I+ G+C   R+DEA+ +FE +    ++ +  
Sbjct: 321 KAGDFDMAYKVYGEMLGKGFKESTVSCNIILAGFCVHMRVDEAISVFEGMVTEGIEHDVF 380

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CK GR+ +A  M+ ++L  G +  V T++ LID   +   +  A +++  M
Sbjct: 381 TYNTLIQGLCKVGRLAEAIRMYQRLLSSGLEPTVSTFTPLIDTMCEEGQVDHAVELFRLM 440

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
                 P +            A R  +AM     ML++ + P
Sbjct: 441 QAKGFEPLVRSNDSVINGFCKARRADDAMAWLAGMLKSNLKP 482



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++  RG + D +TY T+I G C +  + +A ++++++    ++PN   +   + 
Sbjct: 258 ALRVFNEIKLRGYDIDAVTYTTVIDGLCKVGNIVDARKMWDEMVHKGMEPNEYAYCSFLG 317

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK G  D A  ++ +ML KG K + V+ + ++ G+     +  A  V+E M    I  
Sbjct: 318 YYCKAGDFDMAYKVYGEMLGKGFKESTVSCNIILAGFCVHMRVDEAISVFEGMVTEGIEH 377

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
           ++             GR  EA+++Y  +L +G+ P     + L D  +   G  +H +
Sbjct: 378 DVFTYNTLIQGLCKVGRLAEAIRMYQRLLSSGLEPTVSTFTPLID-TMCEEGQVDHAV 434



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  PD + Y  II G  +     EA+++F ++       +++T+T +ID  CK G + DA
Sbjct: 234 GYPPDTVVYQCIIHGLFAHKMGGEALRVFNEIKLRGYDIDAVTYTTVIDGLCKVGNIVDA 293

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-----ENNISPNI--AG 134
             M+ +M+ KG + N   Y   +  Y K+ +   A+ VY EM      E+ +S NI  AG
Sbjct: 294 RKMWDEMVHKGMEPNEYAYCSFLGYYCKAGDFDMAYKVYGEMLGKGFKESTVSCNIILAG 353

Query: 135 -----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                R  EA+ +++ M+  GI  D    +TL
Sbjct: 354 FCVHMRVDEAISVFEGMVTEGIEHDVFTYNTL 385



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K++ ++  +G+EP+   Y + +  YC     D A +++ ++     K ++++  I++ 
Sbjct: 293 ARKMWDEMVHKGMEPNEYAYCSFLGYYCKAGDFDMAYKVYGEMLGKGFKESTVSCNIILA 352

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC   R+D+A  +F  M+ +G + +V TY+ LI G  K   +  A  +Y+ +  + + P
Sbjct: 353 GFCVHMRVDEAISVFEGMVTEGIEHDVFTYNTLIQGLCKVGRLAEAIRMYQRLLSSGLEP 412

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMP 153
            ++            G+   A++L+  M   G  P
Sbjct: 413 TVSTFTPLIDTMCEEGQVDHAVELFRLMQAKGFEP 447



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 55/102 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  +D A++LF  +  +G EP + + +++I G+C   R D+A+     +    LKP   
Sbjct: 426 EEGQVDHAVELFRLMQAKGFEPLVRSNDSVINGFCKARRADDAMAWLAGMLKSNLKPQKQ 485

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           TF  L++      R+DDA ++ + ML+ G   + +  + L+D
Sbjct: 486 TFNSLLELLSTSERVDDALLILNTMLKSGFGLDSLPCTILVD 527



 Score = 42.7 bits (99), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/121 (19%), Positives = 49/121 (40%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            L+L      RG  P       ++  + +     +       +      P+++ +  +I 
Sbjct: 188 GLRLLRDAARRGSPPSSAAAADLVKAFAASGNFPKVSDTLHLMISAGYPPDTVVYQCIIH 247

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                    +A  +F+++  +G   + VTY+ +IDG  K  N+  A  +++EM    + P
Sbjct: 248 GLFAHKMGGEALRVFNEIKLRGYDIDAVTYTTVIDGLCKVGNIVDARKMWDEMVHKGMEP 307

Query: 131 N 131
           N
Sbjct: 308 N 308


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  +D A  LF ++ ++G+ P I+  N+II   C +  +D+A  + +K+    + P+
Sbjct: 220 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 279

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++++ID  CK   MD A  +  +M+E G + N +TY+ LI GY  S     +  V++
Sbjct: 280 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 339

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M    + P +             GR  EA  ++DSM+  G  PD +  ST A +
Sbjct: 340 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASW 394



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 74/131 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +     +   +   G  P+++T+N+++ GYC +  ++EA  L + +  + ++PN
Sbjct: 539 LCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 598

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+D +CK GR+DDA  +F  ML KG K   V YS ++ G F+++   +A  ++ 
Sbjct: 599 CYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFH 658

Query: 122 EMCENNISPNI 132
           EM E+  + +I
Sbjct: 659 EMIESGTTVSI 669



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 48/202 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT--- 64
           +D A+ +F  + ++G+ PD +T+ T+I   C + RLD+A+  F  +  + + P+      
Sbjct: 439 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGC 498

Query: 65  ---------------------------------FTILIDAFCKEGRMDDATMMFSKMLEK 91
                                            F+ +I+  CKEGR+ +   +   M++ 
Sbjct: 499 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 558

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G + NVVT++ L++GY    NM+ AF + + M    I PN              GR  +A
Sbjct: 559 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 618

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
           + ++  ML  G+ P  +L S +
Sbjct: 619 LTVFRDMLHKGVKPTSVLYSII 640



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  L   +   G+EP+   Y T++ GYC   R+D+A+ +F  +    +KP S+ ++
Sbjct: 579 NMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 638

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++    +  R   A  MF +M+E G   ++ TY  ++ G  ++     A  + E++   
Sbjct: 639 IILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAM 698

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+  +I             GR  EA +L+D++   G++P+
Sbjct: 699 NVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPN 738



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  +G+ P+   +N +I  Y     +D+A+ +FE +    + P+++TF  +I + C
Sbjct: 410 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 469

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--- 130
           + GR+DDA   F+ M++ G   +   Y CLI G      +  A ++  EM   +I P   
Sbjct: 470 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 529

Query: 131 --------NI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   N+   GR  E   + D M++ G  P+ +  ++L +
Sbjct: 530 KYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLME 572



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L + G+L   GL PD  +Y ++I G+     +D+A  LF ++    + P  +    +
Sbjct: 193 DLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSI 251

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   CK   MD A  +  KM++ G   ++ TYS +IDG  KS+ M  A  V E+M E   
Sbjct: 252 IKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGT 311

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMP 153
            PN            I+G   E+++++  M   G++P
Sbjct: 312 RPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 348



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 50/210 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +  ++ D G+ PD+ TY+ II G C    +D+A ++ E++     +PN
Sbjct: 255 LCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPN 314

Query: 62  SITFTILIDAFC-----------------------------------KEGRMDDATMMFS 86
           SIT+  LI  +                                    K GR ++A  +F 
Sbjct: 315 SITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFD 374

Query: 87  KMLEKGPKANVVTYS---CLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------- 133
            M+ KGPK ++++YS     +  ++ +       +++  M    I+PN            
Sbjct: 375 SMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYA 434

Query: 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             G   +AM +++ M   G++PD +  +T+
Sbjct: 435 RCGMMDKAMLIFEDMQNKGMIPDTVTFATV 464



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA K+F ++ + G    I TY  ++ G C  N  DEA  L EKL  + +K + ITF I+I
Sbjct: 652 AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVI 711

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            A  K GR  +A  +F  +   G   N+ TYS +I    K ++ + A +++
Sbjct: 712 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 762



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITY-NTIICGYCSLNRLDEAVQLFEKLTCV 56
           LI+ C     L  A +L  ++ ++ + P  + Y ++II   C   R+ E   + + +   
Sbjct: 499 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 558

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             +PN +TF  L++ +C  G M++A  +   M   G + N   Y  L+DGY K+  +  A
Sbjct: 559 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 618

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
             V+ +M    + P              A R T A +++  M+ +G
Sbjct: 619 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 664



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 58/121 (47%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  +L    ++ DIIT+N +I     + R  EA +LF+ ++   L PN  T++++
Sbjct: 686 DEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMM 745

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    KE   ++A  +F  + + G  ++    + ++        +  A +    + ENN+
Sbjct: 746 ITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNL 805

Query: 129 S 129
           +
Sbjct: 806 T 806



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 46  AVQLFEKL---TCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
           A++LF+++    C +  P +I T+ ILID + +  R D    +  ++L+ G   +  +YS
Sbjct: 156 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS 215

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRN 149
            LI G+ K   +  A  ++ EM E  + P I                 +A  +   M+ +
Sbjct: 216 -LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 274

Query: 150 GIMPDGLLLSTLAD 163
           GI PD    S + D
Sbjct: 275 GIAPDLFTYSLIID 288


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L+ A++LF +++D G +P+   +N +I GY  +   + A QLF+++    ++P+
Sbjct: 903  LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPD 962

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++TIL+D  C  GR+D+A   F+++   G   + + Y+ +I+G  KSQ M+ A  +Y 
Sbjct: 963  LKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYN 1022

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            EM    I P+            +AG   +A ++Y+ +   G+ PD
Sbjct: 1023 EMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPD 1067



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   +D A ++F ++ D G  PD++TY  +I   C+  +L+ A +LF K+     KP
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + +  L+D F   G +D     +S+M   G   +VVT++ L+D   K+++   AF  +
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           + M +  I PN+            AGR  +A++L D+M   G+ P      T  DY
Sbjct: 391 DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDY 446



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 70/122 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F ++ D  L P ++TYNT++ G     R+ +A++LFE +   +  PN
Sbjct: 552 LYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPN 611

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I+F  L+D FCK   ++ A  MFSKM     K +V+TY+ +I G  K   +  AF  + 
Sbjct: 612 TISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFH 671

Query: 122 EM 123
           ++
Sbjct: 672 QL 673



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +    +L+ ++  R  +PD ITYN +I      N LD+A+  F  L     +P   
Sbjct: 835 KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR 894

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID   K GR+++A  +F +M + G K N   ++ LI+GY K  + ++A  +++ M
Sbjct: 895 TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
               I P+            +AGR  EA+  ++ +   G+ PD
Sbjct: 955 VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K    D A   F  +  +G+ P++ TYNT+ICG     R+++A++L + +  V ++P
Sbjct: 376 VLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQP 435

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + T+   ID F K G    A   F KM  KG   N+V  +  +    +   ++ A  ++
Sbjct: 436 TAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMF 495

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + EN ++P+              G+  EA+ L   M+RNG  PD +++++L D
Sbjct: 496 NGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLID 550



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K  +LD AL  F  L      P   TY  +I G   + RL+EA++LFE+++    KPN
Sbjct: 868  LAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               F ILI+ + K G  + A  +F +M+ +G + ++ +Y+ L+D    +  +  A   + 
Sbjct: 928  CAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFN 987

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            E+    + P+             + R  EA+ LY+ M   GI+PD
Sbjct: 988  ELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPD 1032



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ F ++  +G+ P+I+  N  +     + RL EA  +F  L    L P+S+T+ +++ 
Sbjct: 456 AVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMK 515

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G++D+A  + S+M+  G + +V+  + LID  +K+  +  A+ +++ M +  +SP
Sbjct: 516 CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +             GR  +A++L++SM+     P+ +  +TL D
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLD 620



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 67/125 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A  +F  L + GL PD +TYN ++  Y  + ++DEAV L  ++     +P+ I   
Sbjct: 487 RLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVN 546

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID+  K GR+D+A  MF +M +      VVTY+ L+ G  K   ++ A +++E M   
Sbjct: 547 SLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXK 606

Query: 127 NISPN 131
             SPN
Sbjct: 607 KCSPN 611



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 71/129 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+ L  ++   G EPD+I  N++I       R+DEA Q+F+++  ++L P  +
Sbjct: 519 KVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVV 578

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+    KEGR+  A  +F  M+ K    N ++++ L+D + K+  ++ A  ++ +M
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 124 CENNISPNI 132
              +  P++
Sbjct: 639 TVMDCKPDV 647



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 69/127 (54%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             +D AL  F +L   GL+PD I YN II G     R++EA+ L+ ++    + P+  T+ 
Sbjct: 978  RVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYN 1037

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             L+      G ++ A  M+ ++   G + +V TY+ LI GY  S+N + A+ VY+ M  +
Sbjct: 1038 SLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVD 1097

Query: 127  NISPNIA 133
              +PNI 
Sbjct: 1098 GCNPNIG 1104



 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD   + + Q+   G  PD++T+  ++   C     DEA   F+ +    + PN  T+  
Sbjct: 348 LDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNT 407

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    + GR++DA  +   M   G +    TY   ID + KS     A + +E+M    
Sbjct: 408 LICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKG 467

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           I PNI             GR  EA  +++ +  NG+ PD +
Sbjct: 468 IVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSV 508



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  + + A  LF  + + G  PD  T+N ++  +    ++ E  +L++++   + KP+
Sbjct: 798 LLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPD 857

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+ I+I +  K   +D A   F  ++    +    TY  LIDG  K   ++ A  ++E
Sbjct: 858 AITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFE 917

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +    PN A            G    A QL+  M+  GI PD    + L D
Sbjct: 918 EMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVD 971



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI+      AL+++ ++   GL+P + TY+ ++         +  + L +++  + L+P
Sbjct: 201 LLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRP 260

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  TFTI I    + G++D+A  +F +M ++G   ++VTY+ LID    +  +++A +++
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320

Query: 121 EEMCENNISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +M  N   P            N  G      + +  M  +G MPD +  + L D
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVD 375



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 9    DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
            + A +LF ++ + G+ PD+ +Y  ++   C   R+DEA+  F +L    L P+ I +  +
Sbjct: 945  ETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRI 1004

Query: 69   IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
            I+   K  RM++A  ++++M  +G   ++ TY+ L+     +  ++ A  +YEE+    +
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGL 1064

Query: 129  SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             P++            +  P  A  +Y +M+ +G  P+
Sbjct: 1065 EPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 11  ALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A ++F + T + G+ P + +YN +I     ++  ++A  LF+ +  V   P++ TF +L+
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
               K G++ +   ++ +M+ +  K + +TY+ +I    KS N+  A D + ++  ++  
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           P               GR  EAM+L++ M   G  P+  + + L
Sbjct: 891 PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNIL 934



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 55/102 (53%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   ++ AL L+ ++ +RG+ PD+ TYN+++        +++A +++E+L    L+P+
Sbjct: 1008 LGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPD 1067

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
              T+  LI  +      + A  ++  M+  G   N+ TY+ L
Sbjct: 1068 VFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 42.4 bits (98), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  + +  D+ TY TI         L +   +  K+       N+ ++  LI    
Sbjct: 144 VFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLI 203

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           + G   +A  ++ +M+ +G K ++ TYS L+    K ++ +    + +EM +  + PN+ 
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      AG+  EA +++  M   G  PD +  + L D
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLID 305


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L+ A++LF +++D G +P+   +N +I GY  +   + A QLF+++    ++P+
Sbjct: 903  LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPD 962

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++TIL+D  C  GR+D+A   F+++   G   + + Y+ +I+G  KSQ M+ A  +Y 
Sbjct: 963  LKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYN 1022

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            EM    I P+            +AG   +A ++Y+ +   G+ PD
Sbjct: 1023 EMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPD 1067



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K    D A   F  +  +G+ P++ TYNT+ICG     R+++A++L   +  V ++P
Sbjct: 376 VLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQP 435

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            + T+ I ID F K G    A   F KM  KG   N+V  +  +    +   ++ A  ++
Sbjct: 436 TAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMF 495

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + EN ++P+              G+  EA+ L   M+RNG  PD +++++L D
Sbjct: 496 NGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLID 550



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +    +L+ ++  R  +PD ITYN +I      N LD+A+  F  L     +P   
Sbjct: 835 KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR 894

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LID   K GR+++A  +F +M + G K N   ++ LI+GY K  + ++A  +++ M
Sbjct: 895 TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
               I P+            +AGR  EA+  ++ +   G+ PD
Sbjct: 955 VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPD 997



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 70/122 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++F ++ D  L P ++TYNT++ G     R+ +A++LFE +   +  PN
Sbjct: 552 LYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPN 611

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I+F  L+D FCK   ++ A  MFSKM     K +V+TY+ +I G  K   +  AF  + 
Sbjct: 612 TISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFH 671

Query: 122 EM 123
           ++
Sbjct: 672 QL 673



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 12/176 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   +D A ++F ++ D G  PD++TY  +I   C+  +L+ A +LF K+     KP
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + +  L+D F   G +D     +S+M   G   +VVT++ L+D   K+++   AF  +
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           + M +  I PN+            AGR  +A++L  +M   G+ P     +   DY
Sbjct: 391 DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDY 446



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 68/125 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A  +F  L + GL PD +TYN ++  Y  + ++DEAV L  ++     +P+ I   
Sbjct: 487 RLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVN 546

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID+  K GR+D+A  MF +M +      VVTY+ L+ G  K   ++ A +++E M E 
Sbjct: 547 SLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEK 606

Query: 127 NISPN 131
             SPN
Sbjct: 607 KCSPN 611



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K  +LD AL  F  L      P   TY  +I G   + RL+EA++LFE+++    KPN
Sbjct: 868  LAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               F ILI+ + K G  + A  +F +M+ +G + ++ +Y+ L+D    +  +  A   + 
Sbjct: 928  CAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFN 987

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            E+    + P+             + R  EA+ LY+ M   GI+PD
Sbjct: 988  ELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPD 1032



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ F ++  +G+ P+I+  N  +     + RL EA  +F  L    L P+S+T+ +++ 
Sbjct: 456 AVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMK 515

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G++D+A  + S+M+  G + +V+  + LID  +K+  +  A+ +++ M +  +SP
Sbjct: 516 CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSP 575

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +             GR  +A++L++SM+     P+ +  +TL D
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLD 620



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 72/129 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+ L  ++   G EPD+I  N++I       R+DEA Q+F+++  ++L P  +
Sbjct: 519 KVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVV 578

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+    KEGR+  A  +F  M+EK    N ++++ L+D + K+  ++ A  ++ +M
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 124 CENNISPNI 132
              +  P++
Sbjct: 639 TVMDCKPDV 647



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 69/127 (54%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             +D AL  F +L   GL+PD I YN II G     R++EA+ L+ ++    + P+  T+ 
Sbjct: 978  RVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYN 1037

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
             L+      G ++ A  M+ ++   G + +V TY+ LI GY  S+N + A+ VY+ M  +
Sbjct: 1038 SLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVD 1097

Query: 127  NISPNIA 133
              +PNI 
Sbjct: 1098 GCNPNIG 1104



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD   + + Q+   G  PD++T+  ++   C     DEA   F+ +    + PN  T+  
Sbjct: 348 LDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNT 407

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    + GR++DA  +   M   G +    TY+  ID + KS     A + +E+M    
Sbjct: 408 LICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKG 467

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           I PNI             GR  EA  +++ +  NG+ PD +
Sbjct: 468 IVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSV 508



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  + + A  LF  + + G  PD  T+N ++  +    ++ E  +L++++   + KP+
Sbjct: 798 LLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPD 857

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+ I+I +  K   +D A   F  ++    +    TY  LIDG  K   ++ A  ++E
Sbjct: 858 AITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFE 917

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM +    PN A            G    A QL+  M+  GI PD    + L D
Sbjct: 918 EMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVD 971



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++ D GL P++ T+   I       ++DEA ++F ++      P+ +T+T+LIDA C
Sbjct: 249 LLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC 308

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
             G++++A  +F KM   G K + V Y  L+D +    ++ +  + + +M  +   P++ 
Sbjct: 309 NAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVV 368

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                      A    EA   +D M + GI+P+    +TL
Sbjct: 369 TFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI+      AL+++ ++   GL+P + TY+ ++         +  + L +++  + L+P
Sbjct: 201 LLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRP 260

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  TFTI I    + G++D+A  +F +M ++G   ++VTY+ LID    +  +++A +++
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320

Query: 121 EEMCENNISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +M  N   P            N  G      + +  M  +G MPD +  + L D
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVD 375



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 9    DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
            + A +LF ++ + G+ PD+ +Y  ++   C   R+DEA+  F +L    L P+ I +  +
Sbjct: 945  ETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRI 1004

Query: 69   IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
            I+   K  RM++A  ++++M  +G   ++ TY+ L+     +  ++ A  +YEE+    +
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGL 1064

Query: 129  SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             P++            +  P  A  +Y +M+ +G  P+
Sbjct: 1065 EPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 11  ALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           A ++F + T + G+ P + +YN +I     ++  ++A  LF+ +  V   P++ TF +L+
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
               K G++ +   ++ +M+ +  K + +TY+ +I    KS N+  A D + ++  ++  
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890

Query: 130 PN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           P               GR  EAM+L++ M   G  P+  + + L
Sbjct: 891 PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNIL 934



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 55/102 (53%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   ++ AL L+ ++ +RG+ PD+ TYN+++        +++A +++E+L    L+P+
Sbjct: 1008 LGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPD 1067

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
              T+  LI  +      + A  ++  M+  G   N+ TY+ L
Sbjct: 1068 VFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 42.4 bits (98), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  + +  D+ TY TI         L +   +  K+       N+ ++  LI    
Sbjct: 144 VFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLI 203

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           + G   +A  ++ +M+ +G K ++ TYS L+    K ++ +    + +EM +  + PN+ 
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      AG+  EA +++  M   G  PD +  + L D
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLID 305


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            +AA +LF  + D+G++ DI TYNT++   C   ++D A ++  ++    + PN +T++ 
Sbjct: 312 WEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYST 371

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +ID + K GR+DDA  MF++M   G   + V+Y+ L+  Y K    + A DV +EM    
Sbjct: 372 MIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAG 431

Query: 128 ISPNI-------AG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I  ++       AG     R  E  ++++ M R  + P+ L  STL D
Sbjct: 432 IRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLID 479



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A ++  ++  + + P+++TY+T+I GY  + RLD+A+ +F ++  + +  + +
Sbjct: 343 KGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRV 402

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  L+  + K GR + A  +  +M   G + +VVTY+ L+ GY K         V+EEM
Sbjct: 403 SYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEM 462

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               +SPN+             G   EAM+++    + G+  D +L S L D
Sbjct: 463 KRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALID 514



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 74/126 (58%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             + AL +  ++ + G+  D++TYN ++ GY    R DE  ++FE++   ++ PN +T++
Sbjct: 416 RFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYS 475

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K G   +A  +F +  + G KA+VV YS LID   K+  ++S+  + +EM + 
Sbjct: 476 TLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKE 535

Query: 127 NISPNI 132
            I PN+
Sbjct: 536 GIRPNV 541



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 15/167 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTII--CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + A+K+F  +   GL P+++TYN +I  CG   +    + V++F+ +    ++P+ ITF 
Sbjct: 242 NEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVE-FKKVVEIFDGMLSNGVQPDRITFN 300

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+    + G  + A  +FS M++KG   ++ TY+ L+D   K   M  AF++  EM   
Sbjct: 301 SLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTK 360

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI PN+             GR  +A+ +++ M   G+  D +  +TL
Sbjct: 361 NILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTL 407



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 65/115 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   D   ++F ++    + P+++TY+T+I  Y       EA+++F +     LK + +
Sbjct: 448 KQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVV 507

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            ++ LIDA CK G ++ +  +  +M ++G + NVVTY+ +ID + +S + +   D
Sbjct: 508 LYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVD 562


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  L++  ++  +G E   +TYNTII G     RL++A+ L+  L      P   
Sbjct: 820 KSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPC 879

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D   K G+M DA  +F++MLE G K N   Y+ L++G+  + N ++   ++E+M
Sbjct: 880 TYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKM 939

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            E  I+P+I            AGR  + +  +  +L  G+ PD ++ + L D
Sbjct: 940 VEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLID 991



 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K   +  A  LF ++ + G +P+   YN ++ G+      +   Q+FEK+    + P+
Sbjct: 888  LLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPD 947

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++T+LID  C  GR++D    F ++LE G + +++ Y+ LIDG  KS+ ++ A  ++ 
Sbjct: 948  IKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFN 1007

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            EM +  I PN+            AG+ +EA Q+Y+ +L  G  P+
Sbjct: 1008 EMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPN 1052



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 51/213 (23%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +    D A ++ G++ D G +PD++T+  +I   C   RL +A  +F K+     KP
Sbjct: 257 VLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKP 316

Query: 61  NSIT-----------------------------------FTILIDAFCKEGRMDDATMMF 85
           + +T                                   +T ++DA C+ GR+D+A  +F
Sbjct: 317 DRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVF 376

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IA 133
            +M EKG      +Y+ LI G+ K+     A +++  M     SPN             +
Sbjct: 377 DEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKS 436

Query: 134 GRPTEAMQLYDSMLRNGIMPD----GLLLSTLA 162
           G+  +A+Q Y+ M   GI+PD      +LS+LA
Sbjct: 437 GQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLA 469



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 65/115 (56%)

Query: 7    HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             L+  L  F QL + GLEPD+I YN +I G     R++EAV LF ++    + PN  T+ 
Sbjct: 963  RLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYN 1022

Query: 67   ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             LI    K G+  +A  M+ ++L KG K NV TY+ LI GY  S +  +A+  Y+
Sbjct: 1023 SLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYD 1077



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D  L L  ++  RG++P++ +Y   I       R DEA Q+  K+     KP+ +
Sbjct: 225 KKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVV 284

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T++I   C  GR+ DA  +F KM     K + VTY  L+D    S + +S  +++  M
Sbjct: 285 THTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAM 344

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             +  + NI             GR  EA+ ++D M   GI P+
Sbjct: 345 VADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPE 387



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD AL +F ++ ++G+ P+  +YN++I G+   +  D A++LF  +      PN  T  
Sbjct: 368 RLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHV 427

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + I+ + K G+   A   +  M  KG   +V   + ++    +S  +  A  V+ E+ + 
Sbjct: 428 LFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDM 487

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +SP+             A +  EAM  +  M+  G +PD L L++L D
Sbjct: 488 GVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLID 536



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 13   KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
            ++F ++ ++G+ PDI +Y  +I   C+  RL++ +  F +L  + L+P+ I + +LID  
Sbjct: 934  QIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGL 993

Query: 73   CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN- 131
             K  R+++A  +F++M +KG   N+ TY+ LI    K+     A  +YEE+      PN 
Sbjct: 994  GKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNV 1053

Query: 132  -----------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
                       ++G    A   YD +   G+     L+S L D NL
Sbjct: 1054 FTYNALIRGYSVSGSTDNAYAAYDCVAV-GVSLKTALISGLVDENL 1098



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A KLF QL +  +EP   TYNT++ G     ++ E + L E++T     PN
Sbjct: 538 LYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPN 597

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  ++D   K G ++ A  M   M EKG   ++ +Y+ ++ G  K +  + AF ++ 
Sbjct: 598 LITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFC 657

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           +M +  ++P+ A   T    +  S ++NG+M +   L T+ +Y L++
Sbjct: 658 QM-KKILAPDYATLCT----ILPSFVKNGLMKEA--LHTVKEYILKA 697



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF +    G+     +YN++I G    N +D A  LF ++  +   P+  T+ +++D
Sbjct: 757 AHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILD 816

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K  R+++   + ++M  KG ++  VTY+ +I G  KS+ ++ A D+Y  +     SP
Sbjct: 817 AMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSP 876

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPD 154
                         AG+  +A  L++ ML  G  P+
Sbjct: 877 TPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPN 912



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           + ++++  +   G   +I++Y  ++   C + RLDEA+ +F+++    + P   ++  LI
Sbjct: 336 SVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLI 395

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             F K    D A  +F+ M   GP  N  T+   I+ Y KS     A   YE M    I 
Sbjct: 396 SGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIV 455

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           P++A            GR   A +++  +   G+ PD
Sbjct: 456 PDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPD 492



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ +  +  +G+ PD+   N ++       RL  A ++F +L  + + P++IT+T++I 
Sbjct: 442 AIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIK 501

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K  + D+A   FS M+E G   +V+  + LID  +K      A+ ++ ++ E  I P
Sbjct: 502 CCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEP 561

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                          G+  E M L + M  +   P+ +  +T+ D
Sbjct: 562 TNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLD 606



 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K   L+ A+ L+  L   G  P   TY  ++ G     ++ +A  LF ++     KPN
Sbjct: 853  LVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPN 912

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
               + IL++     G  ++   +F KM+E+G   ++ +Y+ LID    +  +      + 
Sbjct: 913  CTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFR 972

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            ++ E  + P++            + R  EA+ L++ M + GI+P+
Sbjct: 973  QLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPN 1017



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A++++  + + G+ P + TY+ ++  +     +D  + L  ++    +KPN
Sbjct: 188 LVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPN 247

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++TI I    +  R D+A  +  KM + G K +VVT++ +I     +  +  A DV+ 
Sbjct: 248 VYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFW 307

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           +M  ++  P+             +G     M+++++M+ +G
Sbjct: 308 KMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADG 348



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L  A ++F +L D G+ PD ITY  +I      ++ DEA+  F  +      P+
Sbjct: 468 LARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPD 527

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    LID   K G+ ++A  +F ++ E   +    TY+ L+ G  +   +K    + E
Sbjct: 528 VLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLE 587

Query: 122 EMCENNISPNI 132
           EM  +   PN+
Sbjct: 588 EMTHSIHPPNL 598



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           M+IK C      D A+  F  + + G  PD++  N++I       + +EA +LF +L  +
Sbjct: 498 MMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEM 557

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           +++P + T+  L+    +EG++ +   +  +M       N++TY+ ++D   K+  +  A
Sbjct: 558 KIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCA 617

Query: 117 FDVYEEMCENNISPNIA 133
             +   M E   +P+++
Sbjct: 618 IGMLYSMTEKGCTPDLS 634



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 30/155 (19%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   ++ A+ LF ++  +G+ P++ TYN++I       +  EA Q++E+L     KPN
Sbjct: 993  LGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPN 1052

Query: 62   SITFTILIDAFCKEGRMDDATM------------------------------MFSKMLEK 91
              T+  LI  +   G  D+A                                +F++M  +
Sbjct: 1053 VFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLVDENLINIAEGLFAEMKRR 1112

Query: 92   GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            G   +  TY+ ++D   KS  ++    V EE+ E+
Sbjct: 1113 GCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAED 1147



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A+ +   +T++G  PD+ +YNT++ G     R +EA ++F ++  + L P+
Sbjct: 608 LSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKI-LAPD 666

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVY 120
             T   ++ +F K G M +A     + + K     +  ++  L++G      ++ + +  
Sbjct: 667 YATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFA 726

Query: 121 EEMCENNI 128
           E +    I
Sbjct: 727 ENIASRGI 734



 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 12/154 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++F  +  + ++ ++ T+ T+  G      L  A      +    +  N  T+  LI   
Sbjct: 129 QVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFL 188

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G   +A  ++  M+E G   +V TYS L+  + K +++ +   +  EM    + PN+
Sbjct: 189 VKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNV 248

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPD 154
                       A R  EA Q+   M  +G  PD
Sbjct: 249 YSYTICIRVLGQAARFDEAYQILGKMEDSGCKPD 282



 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 9/127 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYC-----SLNRLDEAVQLFEKLTCVQLKPNSITF 65
           AL+LF   T    +P  + + T  C Y      +  R+ +  Q+F+ +    +K N  TF
Sbjct: 91  ALELF---TAAARQPTAV-HTTESCNYMLELMRAHGRVGDMAQVFDLMQKQIVKANVGTF 146

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             +      +G +  A +    M E G   N  TY+ LI    KS     A +VY+ M E
Sbjct: 147 ATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVE 206

Query: 126 NNISPNI 132
           + ISP++
Sbjct: 207 DGISPSV 213



 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 19/133 (14%)

Query: 45  EAVQLFEKLTCVQLKPNSITFT----ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
           EA++LF   T    +P ++  T     +++     GR+ D   +F  M ++  KANV T+
Sbjct: 90  EALELF---TAAARQPTAVHTTESCNYMLELMRAHGRVGDMAQVFDLMQKQIVKANVGTF 146

Query: 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLR 148
           + +  G      ++SA      M E  +S N             +G   EAM++Y +M+ 
Sbjct: 147 ATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVE 206

Query: 149 NGIMPDGLLLSTL 161
           +GI P     S L
Sbjct: 207 DGISPSVRTYSVL 219


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 93/171 (54%), Gaps = 12/171 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +KE  +D+A  ++ ++    + P++ITY ++I G+C  N++D A+++ + +    L+ + 
Sbjct: 582 VKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDI 641

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  LI  FCK   M++A   FSK+LE G   N + Y+ +I  Y    NM++A ++++E
Sbjct: 642 TVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKE 701

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M  N I  ++             G+ + A+ LY  ML  GI+PD  + + L
Sbjct: 702 MINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVL 752



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D ALK+   +  +GLE DI  Y T+I G+C +  ++ A + F KL  V L PN+I
Sbjct: 618 KSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTI 677

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            + I+I A+     M+ A  +  +M+      ++  Y+ LIDG  K   +  A D+Y EM
Sbjct: 678 VYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEM 737

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               I P+I             G+   A ++   M  N I P  LL +TL   + +    
Sbjct: 738 LCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNL 797

Query: 172 QE 173
           QE
Sbjct: 798 QE 799



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           M++  C    +D A ++   + + GL+P+ ITY  ++ G       + A  +F+++    
Sbjct: 472 MILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAG 531

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + P   TF  +I+  CK GR+ +A    +  +++      +TY+C+IDGY K   + SA 
Sbjct: 532 IVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAE 591

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            VY EMC + ISPN+            + +   A++++D M R G+  D  + +TL
Sbjct: 592 SVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATL 647



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 13/172 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A  L     + G+   ++TYN ++   C L +++EA  L++K+    + P+ +
Sbjct: 409 KQNLLENAYLLLDGAVENGI-ASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLV 467

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  +I   CK+G MDDA  + + ++E G K N +TY+ L++G FK  + + AF+++++M
Sbjct: 468 SYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQM 527

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I P               GR +EA    ++ ++   +P  +  + + D
Sbjct: 528 VAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIID 579



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 62/107 (57%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P  +TYN II GY     +D A  ++ ++   ++ PN IT+T LI+ FCK  +MD A  M
Sbjct: 569 PTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKM 628

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
              M  KG + ++  Y+ LI G+ K Q+M++A   + ++ E  ++PN
Sbjct: 629 HDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPN 675



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 69/125 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++AAL L  ++ +  +  D+  Y ++I G     +L  A+ L+ ++ C  + P+   + 
Sbjct: 691 NMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYN 750

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI+  C  G++++A  +  +M        V+ Y+ LI G+FK  N++ AF +++EM + 
Sbjct: 751 VLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDK 810

Query: 127 NISPN 131
            + P+
Sbjct: 811 GLVPD 815



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 20/176 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L  ++ D  +  ++    ++I GYC    ++ A++LF+++  V + PN   F++LI+
Sbjct: 311 ALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIE 370

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K G ++ A  ++++M   G +  V   + L+ G+ K   +++A+ + +   EN I+ 
Sbjct: 371 WCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIAS 430

Query: 131 NIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +            G+  EA  L+D M+  GI P      +L  YN    G   HC
Sbjct: 431 VVTYNIVLLWLCELGKVNEACNLWDKMIGKGITP------SLVSYNHMILG---HC 477



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 59/105 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE  L  AL L+ ++  RG+ PDI  YN +I G C+  +L+ A ++ +++    + P 
Sbjct: 721 LLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPT 780

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            + +  LI    KEG + +A  +  +ML+KG   +  TY  L++G
Sbjct: 781 VLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 89/192 (46%), Gaps = 46/192 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP------- 60
           +++AL+LF ++ + G+ P++  ++ +I     +  +++A +L+ ++ C+ L+P       
Sbjct: 343 VNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNF 402

Query: 61  ---------------------------NSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
                                      + +T+ I++   C+ G++++A  ++ KM+ KG 
Sbjct: 403 LLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGI 462

Query: 94  KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQ 141
             ++V+Y+ +I G+ K   M  A +V   + E+ + PN              G    A  
Sbjct: 463 TPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFN 522

Query: 142 LYDSMLRNGIMP 153
           ++D M+  GI+P
Sbjct: 523 MFDQMVAAGIVP 534



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +I+   ++ A +LF ++ +R +  D  T   ++       +  EA + F +     LK +
Sbjct: 197 MIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLD 256

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + +++I+I A C+   +D A+ +     E G   +  TY+ +I    +  N   A  + +
Sbjct: 257 AASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKD 316

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM ++ +  N+A            G    A++L+D ++  G+ P+  + S L ++
Sbjct: 317 EMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEW 371


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 88/168 (52%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE        ++ ++  R ++P++ T+N +I   C   ++++A  + E +      PN
Sbjct: 198 LLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPN 257

Query: 62  SITFTILIDAFCK---EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            +++  LID +CK    G+M  A  +  +M+E     N+ T++ LIDG++K  N+  +  
Sbjct: 258 VVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMK 317

Query: 119 VYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           V++EM + ++ PN+             G+ +EA+ + D M+  G+ P+
Sbjct: 318 VFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPN 365



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 91/154 (59%), Gaps = 6/154 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++AA KLF QLT +GL PD++T++ ++ GYC      +A  L ++++ + LKP 
Sbjct: 446 LCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPR 504

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+ I++  +CKEG +  AT M ++M  E+  + NV +Y+ L+ GY +   ++ A  + 
Sbjct: 505 HLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLL 564

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
            EM E  + PN   R T  + + + M+  G +PD
Sbjct: 565 NEMLEKGLVPN---RITYEI-VKEEMVDQGFVPD 594



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 13/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ +L  ++K+F ++ D+ ++P++I+YN++I G C+  ++ EA+ + +K+    ++PN I
Sbjct: 308 KDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLI 367

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI+ FCK   + +A  MF  +  +G       Y+ LID Y K   +   F + EEM
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               I P++             G    A +L+D +   G +PD
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPD 469



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 15/158 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DA LK   ++ +  + P++ T+N +I G+   + L  ++++F+++    +KPN I++  L
Sbjct: 281 DAVLK---EMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G++ +A  M  KM+  G + N++TY+ LI+G+ K+  +K A D++  +     
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            P               G+  +   L + M R GI+PD
Sbjct: 398 VPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPD 435



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           I  + ++  Y + +R +   + F++      K ++++   L+ A  KE R  D   ++ +
Sbjct: 154 IIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKE 213

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT 137
           M+ +  + NV T++ +I+   K+  M  A DV E+M     SPN+    T
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNT 263


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 14/175 (8%)

Query: 15  FGQLTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           F Q  D   E P+++ Y  ++ G+C L+R++EA +L + ++    +PN I +  LID  C
Sbjct: 627 FKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLC 686

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G++D+A  + ++M E G  A + TYS LID YFK +    A  V  +M EN+ +PN+ 
Sbjct: 687 KVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVV 746

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                       G+  EA +L   M   G  P+ +  + + D      G  E C+
Sbjct: 747 IYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID-GFGRIGKIETCL 800



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 29/185 (15%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  LF ++   GL  D+ TY  ++  +C    +++A + F ++  V   PN +T+T 
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--- 124
           LI A+ K  ++  A  +F  ML +G   N+VTYS LIDG+ K+  M+ A  ++E MC   
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSK 618

Query: 125 --------------ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLL 158
                         +N+  PN+              R  EA +L D+M   G  P+ ++ 
Sbjct: 619 DVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVY 678

Query: 159 STLAD 163
             L D
Sbjct: 679 DALID 683



 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  +  ++  +G  PD  TY+ ++   C+ ++++ A  LFE++    L  +  T+TI+
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +D+FCK G ++ A   F++M E G   NVVTY+ LI  Y K++ +  A +++E M     
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            PNI            AG+  +A Q+++ M  +  +PD
Sbjct: 585 LPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPD 622



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 72/130 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A ++  ++++ G    + TY+++I  Y  + R D A ++  K+      PN
Sbjct: 685 LCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 744

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T +ID  CK G+ D+A  +   M EKG + NVVTY+ +IDG+ +   +++  ++ E
Sbjct: 745 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLE 804

Query: 122 EMCENNISPN 131
            M    ++PN
Sbjct: 805 RMGSKGVAPN 814



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A KL   ++  G EP+ I Y+ +I G C + +LDEA ++  +++         T++
Sbjct: 655 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYS 714

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID + K  R D A+ + SKMLE     NVV Y+ +IDG  K      A+ + + M E 
Sbjct: 715 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 774

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
              PN+             G+    ++L + M   G+ P+ +    L D+
Sbjct: 775 GCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDH 824



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 67/126 (53%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A K+  ++ +    P+++ Y  +I G C + + DEA +L + +     +PN +T+T +
Sbjct: 727 DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAM 786

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F + G+++    +  +M  KG   N VTY  LID   K+  +  A ++ EEM + + 
Sbjct: 787 IDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHW 846

Query: 129 SPNIAG 134
             + AG
Sbjct: 847 PTHAAG 852



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 91/183 (49%), Gaps = 13/183 (7%)

Query: 6   CHL-DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           CHL + A K + ++   G+  + I  ++     CS  + ++A  +  ++      P++ T
Sbjct: 426 CHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           ++ ++   C   +M+ A ++F +M   G  A+V TY+ ++D + K+  ++ A   + EM 
Sbjct: 486 YSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           E   +PN+            A + + A +L+++ML  G +P+ +  S L D + ++   +
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQME 605

Query: 173 EHC 175
           + C
Sbjct: 606 KAC 608



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 70/125 (56%), Gaps = 2/125 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A KL   + ++G +P+++TY  +I G+  + +++  ++L E++    + PN +T+ +L
Sbjct: 762 DEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVL 821

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  CK G +D A  +  +M +     +   Y  +I+G+  ++    +  + +E+ +++ 
Sbjct: 822 IDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGF--NKEFIESLGLLDEIGQDDT 879

Query: 129 SPNIA 133
           +P ++
Sbjct: 880 APFLS 884



 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 18/175 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A+    ++      P+++TY+T++CG  +  +L    ++   +      P+   F  
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN------MKSAFDVYE 121
           L+ A+C  G    A  +  KM++ G     V Y+ LI      ++      ++ A   Y 
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYS 437

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM    +  N             AG+  +A  +   M+  G +PD    S +  Y
Sbjct: 438 EMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGY 492



 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 18/176 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYC------SLNRLDEAVQLFEKLTCVQLKPNSIT 64
           A KL  ++   G  P  + YN +I   C      S + L+ A + + ++    +  N I 
Sbjct: 391 AYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKIN 450

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
            +      C  G+ + A  +  +M+ +G   +  TYS ++     +  M+ AF ++EEM 
Sbjct: 451 VSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMK 510

Query: 125 ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
              +  ++            AG   +A + ++ M   G  P+ +  + L    L++
Sbjct: 511 RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566



 Score = 42.7 bits (99), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC--VQLKPNSITFTIL 68
           +L L  ++      P +  Y  ++       RL+ A++L E++      L   S T+  L
Sbjct: 867 SLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSL 926

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           I++ C   ++D A  +FS+M +KG    + T+  LI G F++  +  A 
Sbjct: 927 IESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEAL 975



 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+  G+L D    P   TYN +I  +   + LD A  +  +++   L+ +  T      
Sbjct: 219 ALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAY 278

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK G+  +A  +   M  +    + V Y+ LI G  ++   + A D    M   +  P
Sbjct: 279 SLCKVGKWREALTL---METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335

Query: 131 NIAGRPT 137
           N+    T
Sbjct: 336 NVVTYST 342



 Score = 39.3 bits (90), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/107 (18%), Positives = 49/107 (45%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD + Y  +I G C  +  +EA+    ++      PN +T++ L+     + ++     +
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            + M+ +G   +   ++ L+  Y  S +   A+ + ++M +   +P 
Sbjct: 360 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPG 406



 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A  +  +++   L  D  T        C + +  EA+ L E    V   P+++ +T 
Sbjct: 251 LDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTLMETENFV---PDTVFYTK 307

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           LI   C+    ++A    ++M       NVVTYS L+ G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCG 346



 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 2   LIKECHLDAALKLFGQLT--DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           LIK   L+ AL+L  ++      L     TYN++I   C  N++D+A +LF +++   + 
Sbjct: 893 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVI 952

Query: 60  PNSITFTILIDAFCKEGRMDDATMMF 85
           P   TF  LI    +  ++ +A ++ 
Sbjct: 953 PEMQTFCSLIKGLFRNSKISEALLLL 978


>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 913

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 27/178 (15%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  L  RG  PD+I Y  +I  YC +N L EAV LF  +    +KP+ +TFT+L+D
Sbjct: 635 AQSVFDMLLKRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLD 694

Query: 71  -------------AFCKEGRMD--DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
                        A  K G  D  DA  ++++M +   K +V+ Y+ LIDGY K  ++  
Sbjct: 695 GHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHD 754

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           A  V++EM E  + P+I             G    A+ L D M   GI PD   +S L
Sbjct: 755 AIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMSAL 812



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 79/139 (56%), Gaps = 15/139 (10%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICG---------YCSLNR------LDEAVQLFEK 52
           L  A+ LF  +  RG++PD++T+  ++ G         Y + N       + +A+ ++ +
Sbjct: 667 LKEAVDLFHDMKQRGIKPDLVTFTVLLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWTE 726

Query: 53  LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           +   ++KP+ I +T+LID +CK   + DA  +F +M+E+G + +++TY+ L+ G  +  +
Sbjct: 727 MKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGD 786

Query: 113 MKSAFDVYEEMCENNISPN 131
           +  A ++ ++M    ISP+
Sbjct: 787 VDRAVNLLDQMSLKGISPD 805



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 12/144 (8%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F Q    GL  D ++YN ++   C L +L+EA+ L +++   Q+  + + +T LI+ +C 
Sbjct: 396 FNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCC 455

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--- 131
           +G + DA  +F +M E G + +VVTY  L+ G+ ++     A ++ + M    + PN   
Sbjct: 456 QGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSIT 515

Query: 132 ---------IAGRPTEAMQLYDSM 146
                    + G+  EA  +++S+
Sbjct: 516 YNVVVESLCMGGKVKEAEAVFNSI 539



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 67/110 (60%), Gaps = 4/110 (3%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F ++ + G+E D++TY+ ++ G+C      EA+ L + +   +LKPNSIT+ ++++
Sbjct: 462 AFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVE 521

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + C  G++ +A  +F+ + +K    ++  Y  +I+GY K+ +   A  ++
Sbjct: 522 SLCMGGKVKEAEAVFNSIEDK----SLDNYFAMINGYCKANHTAGAAKLF 567



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A     ++  +G++ + +   +I+   C L    E V  F +   + L  + +
Sbjct: 350 KAGNLLKAYAFLNEMMSKGVKVNCVIVGSILHCLCELGMHSEVVDQFNQFKSLGLFLDGV 409

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  ++DA CK G++++A  +  +M  K    +V+ Y+ LI+GY    N+  AF V+EEM
Sbjct: 410 SYNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEM 469

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EN I  ++             G  TEA+ L D M    + P+ +  + + +
Sbjct: 470 RENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVE 521



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 60/101 (59%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL ++ ++ D  ++PD+I Y  +I GYC ++ L +A+ +F+++    L+P+ IT+T L+ 
Sbjct: 720 ALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTALLS 779

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111
             C+ G +D A  +  +M  KG   +  T S L+ G  K++
Sbjct: 780 GCCQRGDVDRAVNLLDQMSLKGISPDTRTMSALLHGILKTR 820



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 30/190 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR---LDEAVQLFEKLTCVQL 58
           L +E   D  L L   + +  +EP    Y  +    C       + +A  +F+ L     
Sbjct: 588 LCEEGDNDGILMLLETMLNLNVEPSKFIYGKLFTSLCRAGGAAGMRKAQSVFDMLLKRGW 647

Query: 59  KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS-------- 110
            P+ I +TI+I ++C+   + +A  +F  M ++G K ++VT++ L+DG+ K+        
Sbjct: 648 TPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLDGHHKAHIKKVYSA 707

Query: 111 -------QNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
                  +++  A  ++ EM +  I P++                 +A+ ++D M+  G+
Sbjct: 708 ANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGL 767

Query: 152 MPDGLLLSTL 161
            PD +  + L
Sbjct: 768 EPDIITYTAL 777



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 63/122 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A+ L  ++  + +  D++ Y T+I GYC    + +A ++FE++    ++ +
Sbjct: 418 LCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEID 477

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +L+  FC+ G   +A  +   M  +  K N +TY+ +++       +K A  V+ 
Sbjct: 478 VVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVKEAEAVFN 537

Query: 122 EM 123
            +
Sbjct: 538 SI 539



 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 6   CHLDA---ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           C +D+   A+ +F ++ +RGLEPDIITY  ++ G C    +D AV L ++++   + P++
Sbjct: 747 CKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDT 806

Query: 63  ITFTILIDAFCK 74
            T + L+    K
Sbjct: 807 RTMSALLHGILK 818



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A+ +  Q+  R   P I   N ++      ++LD A+ ++++L  + L PN  T+ I
Sbjct: 179 FDDAIDVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAI 238

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           +I A C  G +++A  +  +M E G       Y+  I+G
Sbjct: 239 VIKALCINGSLEEAMYVIKEMEESGITPTGFAYTAYIEG 277



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 20/176 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK   LD AL ++ QL   GL P+  TY  +I   C    L+EA+ + +++    + P 
Sbjct: 208 LIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEESGITPT 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV----VTYSCLIDGYFKSQNMKSAF 117
              +T  I+  C    +++ + +  ++L+    AN+      Y+  + G+        A 
Sbjct: 268 GFAYTAYIEGLC----VNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDKAE 323

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            V  +M +  + P++            AG   +A    + M+  G+  + +++ ++
Sbjct: 324 SVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVGSI 379



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 67/188 (35%), Gaps = 41/188 (21%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI-- 67
           +AL  F QL D G + DI TY  II   C      +   +F  +  V    N   F I  
Sbjct: 82  SALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLRSIFLDIIYVSCNDNDTPFEISH 141

Query: 68  ---------------------------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
                                      L+ A+   G  DDA  +  +M  +    ++   
Sbjct: 142 FLDTLSDGFVDVDSKKQSLFMSKVYDALVKAYVSVGMFDDAIDVLFQMGRRRFVPHIFIC 201

Query: 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLR 148
           + L++   K+  +  A  VY+++    +SPN            I G   EAM +   M  
Sbjct: 202 NFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEE 261

Query: 149 NGIMPDGL 156
           +GI P G 
Sbjct: 262 SGITPTGF 269


>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
 gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F ++ + GL PD + Y T+I GYC+L R D+A Q F  L      P+  T TILI 
Sbjct: 392 ASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIG 451

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  + G + DA  +F  M  +G K +VVTY+ L+ GY K+  +   F++ +EM    ISP
Sbjct: 452 ACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISP 511

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLS 159
           ++A            G   EA ++   ++R G +P  L  +
Sbjct: 512 DVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFT 552



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 86/171 (50%), Gaps = 2/171 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++   ++D A ++  +L  RG  P  + +  +I G+       EA  L+  +  +++KP+
Sbjct: 523 MVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPD 582

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + L+  +CK  RM+ A ++F+K+L+ G K +VV Y+ LI GY    +++ A ++  
Sbjct: 583 VVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 642

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL--ADYNLQSSG 170
            M +  + PN +      + L      N      +LL  +  A ++L S G
Sbjct: 643 LMVQRGMLPNESTHHALVLGLEGKRFVNSETHASMLLEEIIVAKWHLTSGG 693



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +   GL+ D++TYN ++ GY   ++L++  +L +++    + P+  T+ ILI 
Sbjct: 462 AESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIH 521

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +    G +D+A  + S+++ +G   + + ++ +I G+ K  + + AF ++  M +  + P
Sbjct: 522 SMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKP 581

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            A R  +A+ L++ +L  G+ PD +L +TL
Sbjct: 582 DVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTL 624



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+   +L  ++   G+ PD+ TYN +I        +DEA ++  +L      P+++
Sbjct: 490 KTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTL 549

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            FT +I  F K G   +A +++  M +   K +VVT S L+ GY K+Q M+ A  ++ ++
Sbjct: 550 AFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKL 609

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  + P++             G   +A +L   M++ G++P+
Sbjct: 610 LDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPN 652



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 16/167 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D   +L   +   G+ PDI+ +   I   C    L EA  +  KL    +  +S++ +
Sbjct: 286 YFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVS 345

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID FCK G+ ++A  +         + N+  YS  +     + +M  A  +++E+ E 
Sbjct: 346 SVIDGFCKVGKPEEAIKLIHSF---RLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFEL 402

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + P+              GR  +A Q + ++L++G  P  L  ST+
Sbjct: 403 GLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG-NPPSLTTSTI 448



 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 15/168 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +    +  RG   +    +  I  YCS    D+  +L   +    ++P+ + FT+
Sbjct: 252 LELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTV 311

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            ID  CK G + +AT +  K+   G   + V+ S +IDG+ K    + A  +        
Sbjct: 312 FIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSF---R 368

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + PNI             G    A  ++  +   G++PD +  +T+ D
Sbjct: 369 LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMID 416


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 70/130 (53%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L+  L  F QL + GLEPD+ITYN +I G     RL+EAV LF ++    + PN
Sbjct: 1065 LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 1124

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              T+  LI    K G+  +A  M+ ++L KG K NV TY+ LI GY  S +  SA+  Y 
Sbjct: 1125 LYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYG 1184

Query: 122  EMCENNISPN 131
             M      PN
Sbjct: 1185 RMIVGGCLPN 1194



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K   ++ A  LF ++ + G + +   YN ++ G+      ++   LF+ +    + P+
Sbjct: 995  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 1054

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++TI+ID  CK G+++D    F ++LE G + +++TY+ LIDG  KS+ ++ A  ++ 
Sbjct: 1055 IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 1114

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            EM +  I PN+            AG+  EA ++Y+ +L  G  P+
Sbjct: 1115 EMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1159



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   ++  LK+  ++  +G E   +TYNTII G     RL++A+ L+  L      P   
Sbjct: 927  KSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPC 986

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+  L+D   K GR++DA  +F++MLE G KAN   Y+ L++G+  + N +    ++++M
Sbjct: 987  TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM 1046

Query: 124  CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +  I+P+I            AG+  + +  +  +L  G+ PD +  + L D
Sbjct: 1047 VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLID 1098



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K CHL      F  + D+G+ PDI +Y  II   C   +L++ +  F +L  + L+P+ I
Sbjct: 1038 KVCHL------FQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLI 1091

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+ +LID   K  R+++A  +F++M +KG   N+ TY+ LI    K+     A  +YEE+
Sbjct: 1092 TYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1151

Query: 124  CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
                  PN            ++G    A   Y  M+  G +P+
Sbjct: 1152 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  L L  ++   G++P++ +Y   I       R DEA ++  K+     KP+ I
Sbjct: 332 KRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVI 391

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T+LI   C  GR+ DA  +F KM +   K + VTY  L+D +  + + +S  +++  M
Sbjct: 392 THTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAM 451

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             +  + N+             GR  EA++++D M + GI+P+
Sbjct: 452 KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPE 494



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++  +G+ P+  +YN++I G+   +R  +A++LF+ +     KPN  T  + I+
Sbjct: 479 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFIN 538

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G    A   +  M  KG   +VV  + ++ G  KS  +  A  V+ E+    +SP
Sbjct: 539 YYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSP 598

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             A +  EA++++  M+ N  +PD L +++L D
Sbjct: 599 DTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLID 643



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A ++F QL +  LEP   TYNT++ G     ++ E + L E++      PN
Sbjct: 645 LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 704

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  ++D  CK G ++DA  M   M  KG   ++ +Y+ +I G  K +    AF ++ 
Sbjct: 705 LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFC 764

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           +M +  + P+ A   T    +  S ++ G+M + L +  + DY LQ
Sbjct: 765 QM-KKVLIPDYATLCT----ILPSFVKIGLMKEALHI--IKDYFLQ 803



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 48/211 (22%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT-- 64
             D A ++  ++ + G +PD+IT+  +I   C   R+ +A  +F K+     KP+ +T  
Sbjct: 370 RFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 429

Query: 65  ---------------------------------FTILIDAFCKEGRMDDATMMFSKMLEK 91
                                            +T +IDA C+ GR+ +A  MF +M +K
Sbjct: 430 TLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 489

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEA 139
           G      +Y+ LI G+ K+     A ++++ M  +   PN             +G   +A
Sbjct: 490 GIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKA 549

Query: 140 MQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           +Q Y+ M   GI+PD ++      + L  SG
Sbjct: 550 IQRYELMKSKGIVPD-VVAGNAVLFGLAKSG 579



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ +  +  +G+ PD++  N ++ G     RL  A ++F +L  + + P++IT+T++I 
Sbjct: 549 AIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK 608

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K  + D+A  +F  M+E     +V+  + LID  +K+     A+ ++ ++ E N+ P
Sbjct: 609 CCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEP 668

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                          G+  E M L + M  +   P+ +  +T+ D
Sbjct: 669 TDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 713



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F +L   G+ PD ITY  +I      ++ DEAV++F  +      P+
Sbjct: 575 LAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPD 634

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    LID   K GR D+A  +F ++ E   +    TY+ L+ G  +   +K    + E
Sbjct: 635 VLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLE 694

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM  +N  PN+             G   +A+ +  SM   G +PD      L+ YN
Sbjct: 695 EMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD------LSSYN 744



 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 19/159 (11%)

Query: 5    ECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            E H L    K FG     GL      YN++ICG    N +D A  LF ++  +   P+  
Sbjct: 863  EAHELVKKFKSFGVSLKTGL------YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEF 916

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+ +L+DA  K  R+++   +  +M  KG ++  VTY+ +I G  KS+ ++ A D+Y  +
Sbjct: 917  TYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 976

Query: 124  CENNISPN------------IAGRPTEAMQLYDSMLRNG 150
                 SP              AGR  +A  L++ ML  G
Sbjct: 977  MSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 1015



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           + ++++  +   G   +++ Y  +I   C + R+ EA+++F+++    + P   ++  LI
Sbjct: 443 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 502

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             F K  R  DA  +F  M   GPK N  T+   I+ Y KS     A   YE M    I 
Sbjct: 503 SGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIV 562

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           P++            +GR   A +++  +   G+ PD
Sbjct: 563 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 599



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+ E  +D A  LF ++ + G  PD  TYN ++       R++E +++ E++     +  
Sbjct: 890  LVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYEST 949

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +T+  +I    K  R++ A  ++  ++ +G      TY  L+DG  K+  ++ A +++ 
Sbjct: 950  YVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFN 1009

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            EM E     N            IAG   +   L+  M+  GI PD
Sbjct: 1010 EMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 1054



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           M+IK C      D A+K+F  + +    PD++  N++I       R DEA ++F +L  +
Sbjct: 605 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEM 664

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L+P   T+  L+    +EG++ +   +  +M       N++TY+ ++D   K+  +  A
Sbjct: 665 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 724

Query: 117 FDVYEEMCENNISPNIA 133
            D+   M      P+++
Sbjct: 725 LDMLYSMTTKGCIPDLS 741



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL +   +T +G  PD+ +YNT+I G     R +EA  +F ++  V L P+
Sbjct: 715 LCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 773

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK-MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             T   ++ +F K G M +A  +     L+ G K +  +   L++G  K   ++ + +  
Sbjct: 774 YATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFA 833

Query: 121 EEMCENNIS 129
           E +  + I+
Sbjct: 834 EIIASSGIT 842



 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 41/92 (44%)

Query: 41  NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
            R+ +  ++F+ +    +K N  TF  +      EG +  A +    M E G   N  TY
Sbjct: 229 GRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTY 288

Query: 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           + L+    KS   + A +VY  M  + + P++
Sbjct: 289 NGLVYFLVKSGFDREALEVYRVMMVDGVVPSV 320



 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 21/177 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K+  ++ +++    +   G+  D      +I   C   +  EA +L +K     +   
Sbjct: 820 ILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLK 879

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  LI     E  +D A  +F++M E G   +  TY+ L+D   KS  ++    V E
Sbjct: 880 TGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQE 939

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMP---------DGLL 157
           EM               I+G     R  +A+ LY +++  G  P         DGLL
Sbjct: 940 EMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLL 996


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 47/202 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K+   +  +G E DI T NTI  G   LN+ +EA +    +    + PN +++T 
Sbjct: 122 IDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTT 181

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID +CKEG   +A  +F +M + G + N VTY+ LIDG+ K   MK A+++ +EM    
Sbjct: 182 LIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKG 241

Query: 128 ISPNI-----------------------------------------------AGRPTEAM 140
           I P+I                                                GR  EA 
Sbjct: 242 IFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAF 301

Query: 141 QLYDSMLRNGIMPDGLLLSTLA 162
           +LYD M   G+ PD  + ++L 
Sbjct: 302 KLYDEMTEAGLTPDDRVYTSLV 323



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 76/128 (59%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +   A KLF ++   G EP+ +TYN +I G+    R+ EA +L +++    + P+  
Sbjct: 188 KEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIY 247

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T L+   C  G++DDA  +F+++ +KG   NVVTY+ +I G  K    + AF +Y+EM
Sbjct: 248 TYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEM 307

Query: 124 CENNISPN 131
            E  ++P+
Sbjct: 308 TEAGLTPD 315



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D   ++F ++ ++G++ DI  Y  +I   C +     A  LF++LT   L  N  T+  
Sbjct: 17  IDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGA 76

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK G M+ A ++ ++M  +G   N + Y+ LIDGY K   +  AF V   M +  
Sbjct: 77  LIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKG 136

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              +I              +P EA +   +M+  G++P+ +  +TL D
Sbjct: 137 FENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLID 184



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 60/107 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A +L  ++  +G+ PDI TY +++ G C   +LD+AV+LF ++    L  N +
Sbjct: 223 KKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVV 282

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
           T+T +I    KEGR ++A  ++ +M E G   +   Y+ L+    K+
Sbjct: 283 TYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 27  IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
           + TY  +I  + S  ++DE  ++FE++    +K +   +T++I+  CK G    A  +F 
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAG 134
           ++ EKG  ANV TY  LIDG  K+  M++A  +  EM    +  N              G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              EA ++   M + G   D   L+T+AD
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIAD 149


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL L  ++   G     +TYNTII   C   R++EA ++F+++    +  +++TF  
Sbjct: 458 LGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNT 517

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID  CK  R+DDAT +  +M+++G + N +TY+ ++  Y K  N+K A D+ E M  N 
Sbjct: 518 LIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANG 577

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
              ++            AGR   A++L   M   GI P
Sbjct: 578 FEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRP 615



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  +  Q+ DRG  PD  T+NT+I    S NRL+EA+ L  +LT   L P+
Sbjct: 347 LSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPD 406

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILI+A CK G       +F +M   G   + VTY+ LID       + +A D+  
Sbjct: 407 VYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLN 466

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM  N    +               R  EA +++D M   GI    +  +TL D
Sbjct: 467 EMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLID 520



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++   L     ++ ++T RG++PD++T NT+I   C  +++  AV + E+++   + P
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAP 230

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  TFT L+  F +EG ++ A  + +KM+E G     VT + LI+GY K   ++ A    
Sbjct: 231 DETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYI 290

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++   +   P+              G  + A+++ D ML+ G  PD    +T+
Sbjct: 291 QQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTV 343



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A ++F Q+  +G+    +T+NT+I G C   R+D+A +L E++    L+PN
Sbjct: 487 LCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPN 546

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  ++  +CK+G +  A  +   M   G + +VVTY  LI+G  K+   + A  +  
Sbjct: 547 NITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLR 606

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            M    I P     P     +  S+ R   + D L L
Sbjct: 607 GMRIKGIRPT----PKAYNPVIQSLFRRNNLRDALNL 639



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L  Q+   GL+P+ ITYN+I+  YC    + +A  + E +T    + +
Sbjct: 522 LCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEID 581

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK GR   A  +   M  KG +     Y+ +I   F+  N++ A +++ 
Sbjct: 582 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFR 641

Query: 122 EMCENNISPNI------------AGRP-TEAMQLYDSMLRNGIMPD 154
           EM E    P+              G P  EA      M+  G MP+
Sbjct: 642 EMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPE 687



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 14/171 (8%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + + HL   ++LF ++   G  PD +TYN +I   CS+ +L  A+ L  ++       ++
Sbjct: 420 VGDPHL--GIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRST 477

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +IDA CK+ R+++A  +F +M  +G   + VT++ LIDG  K++ +  A ++ E+
Sbjct: 478 VTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQ 537

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M +  + PN              G   +A  + ++M  NG   D +   TL
Sbjct: 538 MVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTL 588



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL    Q    G EPD +TYNT + G C    +  A+++ + +      P+  
Sbjct: 279 KMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVF 338

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I+   K G +D+A  + ++M+++G   +  T++ LI        ++ A D+  E+
Sbjct: 339 TYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAREL 398

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
               +SP++             G P   ++L++ M  +G  PD +  + L D+
Sbjct: 399 TVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDH 451



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+E  ++AAL++  ++ + G  P  +T N +I GYC + R+++A+   ++      +P+
Sbjct: 242 FIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPD 301

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+   +   C+ G +  A  +   ML++G   +V TY+ +I+   K+  +  A  +  
Sbjct: 302 QVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVN 361

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M +    P+               R  EA+ L   +   G+ PD
Sbjct: 362 QMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPD 406



 Score = 43.5 bits (101), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/163 (19%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL-FEKLT--CVQLKPNSITFTILID 70
           L  ++   G +   +   + +  Y  L R D+AV L   +L      ++ +++ F  L++
Sbjct: 111 LVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLN 170

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              +  ++     ++++M  +G + +VVT + LI    ++  +++A  + EEM  + ++P
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAP 230

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +              G    A+++   M+  G  P G+ ++ L
Sbjct: 231 DETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVL 273


>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
 gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 693

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F ++ + GL PD + Y T+I GYC+L R D+A Q F  L      P+  T TILI 
Sbjct: 392 ASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIG 451

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  + G + DA  +F  M  +G K +VVTY+ L+ GY K+  +   F++ +EM    ISP
Sbjct: 452 ACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISP 511

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLS 159
           ++A            G   EA ++   ++R G +P  L  +
Sbjct: 512 DVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFT 552



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 86/171 (50%), Gaps = 2/171 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++   ++D A ++  +L  RG  P  + +  +I G+       EA  L+  +  +++KP+
Sbjct: 523 MVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPD 582

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + L+  +CK  RM+ A ++F+K+L+ G K +VV Y+ LI GY    +++ A ++  
Sbjct: 583 VVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIG 642

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL--ADYNLQSSG 170
            M +  + PN +      + L      N      +LL  +  A ++L S G
Sbjct: 643 LMVQRGMLPNESTHHALVLGLEGKRFVNSETHASMLLEEIIVAKWHLTSGG 693



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 88/163 (53%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +   GL+ D++TYN ++ GY   ++L++  +L +++    + P+  T+ ILI 
Sbjct: 462 AESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIH 521

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           +    G +D+A  + S+++ +G   + + ++ +I G+ K  + + AF ++  M +  + P
Sbjct: 522 SMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKP 581

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++            A R  +A+ L++ +L  G+ PD +L +TL
Sbjct: 582 DVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTL 624



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   L+   +L  ++   G+ PD+ TYN +I        +DEA ++  +L      P+++
Sbjct: 490 KTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTL 549

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            FT +I  F K G   +A +++  M +   K +VVT S L+ GY K+Q M+ A  ++ ++
Sbjct: 550 AFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKL 609

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            +  + P++             G   +A +L   M++ G++P+
Sbjct: 610 LDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPN 652



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 16/167 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           + D   +L   +   G+ PDI+ +   I   C    L EA  +  KL    +  +S++ +
Sbjct: 286 YFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVS 345

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID FCK G+ ++A  +         + N+  YS  +     + +M  A  +++E+ E 
Sbjct: 346 SVIDGFCKVGKPEEAIKLIHSF---RLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFEL 402

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + P+              GR  +A Q + ++L++G  P  L  ST+
Sbjct: 403 GLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG-NPPSLTTSTI 448



 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 15/168 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +    +  RG   +    +  I  YCS    D+  +L   +    ++P+ + FT+
Sbjct: 252 LELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTV 311

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            ID  CK G + +AT +  K+   G   + V+ S +IDG+ K    + A  +        
Sbjct: 312 FIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSF---R 368

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + PNI             G    A  ++  +   G++PD +  +T+ D
Sbjct: 369 LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMID 416


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F ++  RGL P ++++NT+I G C    ++E  +L   +    + P+  TF+ LI+  C
Sbjct: 270 VFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLC 329

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           KEGR+D+ +++F +M  +G   N VT++ LIDG  K   +  A   ++ M    + P++ 
Sbjct: 330 KEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLV 389

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                       G   EA +L + M  +G+ PD +  +TL D
Sbjct: 390 TYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLID 431



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 53/214 (24%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D ALK F  +  +G+ PD++TYN +I G C +  L EA +L  ++T   LKP+ ITFT 
Sbjct: 369 VDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTT 428

Query: 68  LID-----------------------------------AFCKEGRMDDATMMFSKMLEKG 92
           LID                                     C+EGR+ DA  M + ML  G
Sbjct: 429 LIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAG 488

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
            K +  TY+ +ID + K  ++K  F + +EM  +   P +             G+   A 
Sbjct: 489 FKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAK 548

Query: 141 QLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
            L D+ML  G+ P+ +       YN+   G  +H
Sbjct: 549 MLLDAMLNVGVAPNDI------TYNILLDGHSKH 576



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 73/128 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++   +L G +   G+ PD+ T++ +I G C   RLDE   LF+++    L PN +
Sbjct: 295 KSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGV 354

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LID  CK G++D A   F  ML +G + ++VTY+ LI+G  K  ++K A  +  EM
Sbjct: 355 TFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEM 414

Query: 124 CENNISPN 131
             + + P+
Sbjct: 415 TASGLKPD 422



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD    LF ++  RGL P+ +T+ T+I G C   ++D A++ F+ +    ++P+
Sbjct: 328 LCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPD 387

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK G + +A  + ++M   G K + +T++ LIDG  K  +M+SA ++  
Sbjct: 388 LVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKR 447

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
            M E  I   ++A           GR  +A ++   ML  G  PD
Sbjct: 448 RMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPD 492



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++   ++ +  L+ ++ D G  P I  +N ++ G+C    +  A  +F+++    L+P  
Sbjct: 224 LRPVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTV 283

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           ++F  LI   CK G +++   +   M  +G   +V T+S LI+G  K   +     +++E
Sbjct: 284 VSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDE 343

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           MC   + PN              G+   A++ +  ML  G+ PD
Sbjct: 344 MCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPD 387



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A ++   +   G +PD  TY  +I  +C    +    +L +++      P 
Sbjct: 468 LCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPG 527

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            +T+  L++  CK+G+M +A M+   ML  G   N +TY+ L+DG+ K
Sbjct: 528 VVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSK 575



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +    KL  ++   G  P ++TYN ++ G C   ++  A  L + +  V + PN I
Sbjct: 505 KKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDI 564

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
           T+ IL+D   K G   D  +  S   EKG   +  +Y+ L++
Sbjct: 565 TYNILLDGHSKHGSSVDVDIFNS---EKGLVTDYASYTALVN 603


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A  L  +L D G+ P++  YN +I   C   R D+A +LF+++    L+PN
Sbjct: 336 LRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPN 395

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILI A CK G ++DA  +F KM +KG K  V  Y+ LI+GY K  ++  A  +  
Sbjct: 396 EVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLS 455

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  ++P  A            G  +  M+L+  M   GI  +    + L
Sbjct: 456 GMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTAL 507



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 71/128 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L   +   GL P   +Y+ +I G C    L   ++L  ++    +  N+ 
Sbjct: 443 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 502

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI+ FCK+ +MD+A  +F KM++     N VT++ +I+GY    N++ AF +Y++M
Sbjct: 503 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 562

Query: 124 CENNISPN 131
            E  + P+
Sbjct: 563 VEMGLKPD 570



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A +LF ++  RGLEP+ +TY  +I   C    +++A+ LF+K+    +K  
Sbjct: 371 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 430

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI+ +CK+G +D A  + S M+++G      +YS LI G  ++ ++ S  +++ 
Sbjct: 431 VYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHR 490

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E  I+ N       I G     +  EA +L+D M+ + ++P+ +  + + +
Sbjct: 491 EMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIE 544



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L + ++L  ++ +RG+  +  T+  +I G+C   ++DEA +LF+K+    + PN
Sbjct: 476 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 535

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ++I+ +C  G +  A  ++ +M+E G K +  TY  LI G   +  +  A +   
Sbjct: 536 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 595

Query: 122 EM-----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           ++       NN S           GR TE   L+D M   G+  D +  + +    L+  
Sbjct: 596 DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQH 655

Query: 170 GSQEHCI 176
             ++ C+
Sbjct: 656 DKEKSCV 662



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  AL  + Q+   G  P+ +T+  +I   C    L  A  L +++    + PN
Sbjct: 686 LSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPN 745

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   +D F  EG M+ A  + S ML+ G  A++V+++ LI G  K+  ++ A D+  
Sbjct: 746 KFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMS 804

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           ++ E+  SP+     T            +A +L++ ML  G+ PD
Sbjct: 805 KITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 849



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ ++G++PD I Y  +I        + +A+  ++++      PN++T T+LI+  C
Sbjct: 663 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 722

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----IS 129
           K G +  A ++  +ML      N  TY+C +D +    +M+ A D++  M + +    +S
Sbjct: 723 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS 782

Query: 130 PNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            NI       AG+  EA+ L   +  +G  PD +  ST+
Sbjct: 783 FNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 821



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 47/205 (22%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYC--------------------SLN----- 41
           ++  A +L+ Q+ + GL+PD  TY ++I G C                     LN     
Sbjct: 551 NIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLT 610

Query: 42  ----------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                     R  E   L++++    +K + ++FTI++ A  K+   + + ++F +M E+
Sbjct: 611 ALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 670

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G K + + Y+C+ID   K +NM  A + +++M  +  SPN             +G    A
Sbjct: 671 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSA 730

Query: 140 MQLYDSMLRNGIMPDGLLLSTLADY 164
             L   ML   ++P+    +   DY
Sbjct: 731 ELLCKEMLAGNVLPNKFTYNCFLDY 755



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 23/134 (17%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G    I+++N +I G C   ++ EA+ L  K+T     P+ I+++ +I   CK G ++ 
Sbjct: 774 QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINK 833

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAM 140
           A  ++++ML KG K +VV                 A++++   C      N+ G   +A+
Sbjct: 834 AFELWNEMLYKGLKPDVV-----------------AYNIFIRWC------NVHGESDKAL 870

Query: 141 QLYDSMLRNGIMPD 154
            +Y +M+R+G+ P+
Sbjct: 871 GIYTNMIRSGVQPN 884



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+ L  ++T+ G  PD I+Y+TII   C +  +++A +L+ ++    LKP+
Sbjct: 790 LCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 849

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            + + I I      G  D A  +++ M+  G + N  TY  L+ G
Sbjct: 850 VVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 894



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 47/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL------------------ 43
           L K   +  A+++   + + G+  D +TY T++ G+C +  L                  
Sbjct: 266 LCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPS 325

Query: 44  -----------------DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                            +EA  L  KL  + + PN   +  LID  CK  R DDA  +F 
Sbjct: 326 EANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFK 385

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
           +M  +G + N VTY+ LI    K   ++ A  ++++M +  I   +             G
Sbjct: 386 EMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQG 445

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               A  L   M++ G+ P     S L
Sbjct: 446 SLDRARGLLSGMVKEGLTPTAASYSPL 472



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  LF ++   G+  D   Y   I  YC    LD A  L  ++    +K +
Sbjct: 196 LVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKAS 255

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ + +L+   CK  R+ +A  + + M+  G  A+ VTY  L+ G+ + + ++ A  +  
Sbjct: 256 AVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITH 315

Query: 122 EMCENNISPNIA 133
           +M      P+ A
Sbjct: 316 DMIRLGFVPSEA 327



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A  L  ++   G++   + YN ++ G C   R+ EAV++   +  + +  + +T+ 
Sbjct: 236 NLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYR 295

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  FC+   ++ A  +   M+  G   +    S +ID   K + ++ AF +  ++ + 
Sbjct: 296 TLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDL 355

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+              R  +A +L+  M   G+ P+ +  + L
Sbjct: 356 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAIL 402



 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           + G     G+  +  T + I+     + +   A  LF+K+    +  +   +T  I A+C
Sbjct: 173 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 232

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           +   +D A  +  +M  +G KA+ V Y+ L+ G  K+  ++ A +V   M    ++ +  
Sbjct: 233 ESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV 292

Query: 134 GRPT------------EAMQLYDSMLRNGIMP 153
              T             A+++   M+R G +P
Sbjct: 293 TYRTLVYGFCRMEELEMALRITHDMIRLGFVP 324


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 17/178 (9%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICG-YCSLNRLDEAVQLFEKLTCVQLKP 60
            L K   LD A+KLF ++      P ++TYNTII   + S +R  E    FE++    + P
Sbjct: 1335 LGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISP 1394

Query: 61   NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +S T++ILID FCK  RM+ A M+  +M EKG       Y  LID   K++    A +++
Sbjct: 1395 SSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 1454

Query: 121  EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD----GLLLSTLA 162
            +E+ EN  S +             AGR  +A+ ++D M + G  PD      L+S LA
Sbjct: 1455 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLA 1512



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 11   ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITFTILI 69
            A+ +F Q+  R  +P    YN++I       + ++  QL+ +++      P+++T++ LI
Sbjct: 1168 AITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALI 1227

Query: 70   DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             AFCK GR D A  + ++M E G +     Y+ LI  +FK  +   A  ++EEM      
Sbjct: 1228 SAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCR 1287

Query: 130  PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            P++            AGR  EA   +  M R G  PD + ++ + ++
Sbjct: 1288 PDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINF 1334



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 13/159 (8%)

Query: 1    MLIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
            ML+ E   +   +L+ +++  G   PD +TY+ +I  +C L R D A+QL  ++  + ++
Sbjct: 1193 MLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQ 1252

Query: 60   PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            P +  +T+LI  F K      A  +F +M  +  + +V TY+ LI G  K+  +  A+  
Sbjct: 1253 PTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHF 1312

Query: 120  YEEMCENNISPNI------------AGRPTEAMQLYDSM 146
            + EM      P+             AGR  +AM+L+  M
Sbjct: 1313 FCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEM 1351



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 9    DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
            D+A++L  ++ + G++P    Y  +I  +   N    A+ LFE++     +P+  T+T L
Sbjct: 1237 DSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTEL 1296

Query: 69   IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
            I    K GR+D+A   F +M  +G + + V  + +I+   K+  +  A  +++EM     
Sbjct: 1297 IRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRC 1356

Query: 129  SPNIA-------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++               R +E    ++ M  +GI P     S L D
Sbjct: 1357 IPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 1404



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 15   FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
            F ++ + G+ P   TY+ +I G+C  NR+++A+ L E++      P    +  LIDA  K
Sbjct: 1384 FERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 1443

Query: 75   EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
              R D A  +F ++ E    ++   Y+ +I    K+  +  A ++++EM +   +P++  
Sbjct: 1444 AKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYA 1503

Query: 133  ----------AGRPTEAMQLYDSMLRNGIMPD 154
                       G   EA+     M  +G +PD
Sbjct: 1504 YNALMSGLARTGMLDEALSTMRRMQEHGCIPD 1535



 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 57/122 (46%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   LD A+ +F ++   G  PD+  YN ++ G      LDEA+    ++      P+
Sbjct: 1476 LGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 1535

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++ I+++   K G    A  M S M +   + +VV+Y+ ++     +   + A  + +
Sbjct: 1536 INSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMK 1595

Query: 122  EM 123
            EM
Sbjct: 1596 EM 1597



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 78/178 (43%), Gaps = 16/178 (8%)

Query: 9    DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
            D A +LF +L +         Y  +I       RLD+A+ +F+++  +   P+   +  L
Sbjct: 1448 DLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNAL 1507

Query: 69   IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
            +    + G +D+A     +M E G   ++ +Y+ +++G  K+     A ++   M ++ +
Sbjct: 1508 MSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTV 1567

Query: 129  SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174
             P++            AG   EA +L   M   G   D +  S++    L++ G  +H
Sbjct: 1568 RPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSI----LEAIGKVDH 1621



 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 52/102 (50%)

Query: 8    LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            LD AL    ++ + G  PDI +YN I+ G         A+++   +    ++P+ +++  
Sbjct: 1517 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 1576

Query: 68   LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
            ++ A    G  ++A+ +  +M   G + +++TYS +++   K
Sbjct: 1577 VLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 1618


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 68/110 (61%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G EP+I+ YN +I GYC+   ++ A+++FE +   +  PN  T+T LI   CK G+++ A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            ++FS+M+E G + NVVTY+ LI G     +++ AF +   M  N + PN
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPN 316



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A+ LF ++ + GLEP+++TY  +I G C+   L  A +L   +    L PN
Sbjct: 257 LCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPN 316

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF++LIDA CK  ++++A +    +++KG K N V Y+ LIDG  K+  + +A ++ +
Sbjct: 317 DWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQ 376

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M      P+       I G     + ++A  + + M+  GI    +  + + D  ++  
Sbjct: 377 KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREV 436

Query: 170 GSQ 172
           GS+
Sbjct: 437 GSE 439



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A    G L  +G++ + + Y ++I G C   ++D A +L +K+      P+
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPD 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + +++ LID  C++ ++  AT+M   M+EKG +A+ VTY+ +ID   +    +    +++
Sbjct: 387 AHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFD 446

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    I+P+I             GR  +A  +   M+  G+ P+ +  +TL
Sbjct: 447 KMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTL 498



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 35/165 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV-------------- 47
           L K   +DAA +L  ++   G  PD  +Y+++I G C   +L +A               
Sbjct: 362 LCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 48  ---------------------QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                                ++F+K+    + P+ +T+T+ + ++C+EGRM+DA  M  
Sbjct: 422 PVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIV 481

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           +M+++G   N+VTY+ LI GY     +  AF  +E M      PN
Sbjct: 482 QMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPN 526



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++F  +  RG      TY  ++ G      + EA+ +F  +      P++  +  
Sbjct: 123 LTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYAT 182

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C+ GR ++A ++  + +  G + N+V Y+ LIDGY  +  M+ A  V+E M  N 
Sbjct: 183 MVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNR 242

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            SPN+            +G+   AM L+  M+  G+ P+ +  + L
Sbjct: 243 CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTAL 288



 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +F  +      PD   Y T++ G C   R +EA  L E+      +PN + +  LID
Sbjct: 161 AMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID 220

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G M+ A  +F  M       NV TY+ LI G  KS  ++ A  ++  M E  + P
Sbjct: 221 GYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP 280

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G    A +L   M  NG++P+    S L D
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLID 325



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 79/170 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++E   +   K+F ++   G+ PDI+TY   +  YC   R+++A  +  ++    + PN
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  +   G +  A   F  M+ KG K N  +Y+ L+    K  +  ++ D+++
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
                ++  +        + +Y  + +  +     LLS + ++  Q S +
Sbjct: 552 IADMKDLQESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNT 601



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 13/171 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  R    ++ TY T+I  YC    +  A Q    L    L P+S  +T  +  +C+ G 
Sbjct: 63  LASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGM 122

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           +  A  +F  M  +G      TY+ L+ G   +  ++ A  V+  M  ++ +P+      
Sbjct: 123 LTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYAT 182

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                  AGR  EA  L +  + NG  P+ ++ + L D    ++G  EH +
Sbjct: 183 MVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID-GYCNAGEMEHAL 232


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 12/160 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A ++F ++   G  P+ +TY+T+I G C+  R+ EA+ + E++T   ++P   T+T+
Sbjct: 248 LDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTV 307

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I + C  GR+DDA  +   M +KG   +V TY+ +I G F++  M+ A  +Y +M +  
Sbjct: 308 PISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEG 367

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
           + PN              GR   A++++D M  +G + + 
Sbjct: 368 LVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANA 407



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + +A  ++ Q+   G++P ++T+NT+I   C   ++ EAV +F K+    L P++ T+T 
Sbjct: 178 VTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTS 237

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+  ++D A  +F +M++ G   N VTYS LI+G      +  A D+ EEM E  
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
           I P +             GR  +A+ L  SM + G  P
Sbjct: 298 IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSP 335



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 91/175 (52%), Gaps = 12/175 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+  +  A+ +F ++    L PD  TY ++I G+C   +LD+A ++F+++      P
Sbjct: 206 ILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNP 265

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           NS+T++ LI+  C EGR+ +A  M  +M EKG +  V TY+  I        +  A ++ 
Sbjct: 266 NSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLV 325

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             M +   SP++            AG+   A+ +Y  ML+ G++P+ +  + L +
Sbjct: 326 RSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALIN 380



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 67/129 (51%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K  +L+ A +    + +   EPD  TY  +I G+C   +LD A   F ++    + PN 
Sbjct: 453 LKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQ 512

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+T +ID +CKEG++D A  +F +M E G  A++ TY+ +I G  K      A     +
Sbjct: 513 WTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAK 572

Query: 123 MCENNISPN 131
           M E  + PN
Sbjct: 573 MTEQGLQPN 581



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +D AL LF ++ + G    I TYN II G    NR  EA +   K+T   L+PN+I
Sbjct: 524 KEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTI 583

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI+  CK    + A  +F +M +K    N  TY+ LI G  +    +   D  E +
Sbjct: 584 TYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQ----EGKVDAAERL 639

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMP 153
            EN   P I             GR  EA QL ++M   G+ P
Sbjct: 640 TENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSP 681



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ +F ++   G  P ++TYNT+I        L+ A +    +     +P+  T+  
Sbjct: 423 IEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCE 482

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FCK G++D AT  F +ML+ G   N  TY+ +IDGY K   +  A  ++E M EN 
Sbjct: 483 LISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENG 542

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            S +I              R +EA +    M   G+ P+ +  ++L +
Sbjct: 543 CSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLIN 590



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +  A+ +  ++T++G+EP + TY   I   C + R+D+A+ L   +      P+
Sbjct: 277 LCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPS 336

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T +I    + G+M+ A  M+ KML++G   N VTY+ LI+          A  +++
Sbjct: 337 VQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFD 396

Query: 122 EM----------CENNISPNIAGRP--TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            M            N I   + G     +AM +++ ML++G  P  +  +TL   NL+
Sbjct: 397 WMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLK 454



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A K+F ++  +   P+  TY ++I G C   ++D A    E+LT    +P 
Sbjct: 592 LCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA----ERLTENGCEPT 647

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ L+   C+EGR ++A+ +   M EKG   ++  Y  L+  + KS  +  A +++ 
Sbjct: 648 IDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFN 707

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M      P++              R  EA+ ++ S+L+     D ++ + L D  LQ  
Sbjct: 708 LMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEG 767

Query: 170 GS 171
            S
Sbjct: 768 DS 769



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 12/146 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A K   ++T++GL+P+ ITY ++I G C     + A ++F ++      PN
Sbjct: 557 LSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPN 616

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T LI   C+EG++D A     ++ E G +  + TYS L+ G  +      A  + E
Sbjct: 617 AHTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVE 672

Query: 122 EMCENNISPNIAGRPTEAMQLYDSML 147
            M E  +SP        +M++Y S+L
Sbjct: 673 NMKEKGLSP--------SMEIYCSLL 690



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 19/172 (11%)

Query: 1   MLIKECHLDAALKLFGQL------TDRGLEP-DIITYNTIICGYCSLNRLDEAVQLFEKL 53
           ++IK C  +  LK           +D GL    + ++NT++      + +  A  ++ ++
Sbjct: 129 LMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQI 188

Query: 54  TCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
               +KP+ +TF  +I+  CK+G++ +A ++F+K+ +     +  TY+ LI G+ +++ +
Sbjct: 189 FSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKL 248

Query: 114 KSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMP 153
             AF+V++ M ++  +PN              GR  EAM + + M   GI P
Sbjct: 249 DKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEP 300



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ A+ ++ ++   GL P+ +TYN +I   C+  R   A+++F+ +       N
Sbjct: 347 LFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLAN 406

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+  +I        ++ A ++F+KML+ GP   VVTY+ LI    K   + +A     
Sbjct: 407 AQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLY 466

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M E+N  P+              G+   A   +  ML+ GI P+    + + D
Sbjct: 467 MMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMID 520



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E     ALK+F  +   G   +  TYN II G   ++ +++A+ +F K+      P 
Sbjct: 382 LCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPT 441

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI    K G +++AT     M E   + +  TY  LI G+ K   + SA   + 
Sbjct: 442 VVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFY 501

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNG 150
           EM +  ISPN              G+   A+ L++ M  NG
Sbjct: 502 EMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENG 542



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D AL++F  +  +G +P +  Y  +IC  C ++R +EA+ +F+ L   Q   + I
Sbjct: 695 KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLI 754

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLE 90
            +T+L+D   +EG   D  M F  ++E
Sbjct: 755 VWTVLVDGLLQEGD-SDLCMKFLYLME 780


>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M  K   L  ALK F  +    L P+++T+  +I GYC    L+  V L+E++  V++  
Sbjct: 172 MFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEEMRRVRMSL 231

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N +T+T LID FCK+G M  A  M+ +MLE   + N + Y+ +I+G+F+  +  +A    
Sbjct: 232 NVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKFL 291

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
            +M    +  +I             G+  EA ++ + M +  ++PD ++ +T+ +   +S
Sbjct: 292 AKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTMMNAYFKS 351



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
            K   + AA+ ++ +L +RG EPD++  +T+I G     +L EA+  F    C + K N 
Sbjct: 349 FKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISYF----CTE-KAND 403

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           + +T+LIDA CKE    +   +FSK+ E G   +   Y+  I G  K  N+  AF +  +
Sbjct: 404 VMYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTK 463

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M +  +  ++             G   EA Q++D MLR+G+ PD  +   L
Sbjct: 464 MVQEGLELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRSGVCPDSAVFDLL 514



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+K   ++ ++G+  DI  Y  II G C + +L EA ++ E +    L P+ + FT +
Sbjct: 285 DNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTM 344

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ++A+ K GRM  A  M+ K++E+G + +VV  S +IDG  K+  +  A   +     N++
Sbjct: 345 MNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISYFCTEKANDV 404

Query: 129 SPNIAGRP-------TEAMQLYDSMLRNGIMPDGLLLST 160
              +            E  +L+  +   G++PD  + ++
Sbjct: 405 MYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTS 443



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 16/153 (10%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++TY+T I  +C    L  A++ F  +    L PN +TFT LID +CK G ++    +
Sbjct: 161 PNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSL 220

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           + +M       NVVTY+ LIDG+ K   M+ A  +Y  M E+ + PN             
Sbjct: 221 YEEMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQ 280

Query: 133 AGRPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
            G    AM+    ML  G+  D    G+++S L
Sbjct: 281 RGDSDNAMKFLAKMLNQGMRLDITAYGVIISGL 313



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 59/121 (48%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF ++++ GL PD   Y + I G C    L +A +L  K+    L+ +   +T LI   
Sbjct: 424 RLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTKMVQEGLELDLFAYTTLIYGL 483

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
             +G M +A  +F +ML  G   +   +  LI  Y K  NM +A D+  +M    ++  +
Sbjct: 484 TSKGLMVEARQVFDEMLRSGVCPDSAVFDLLIRAYEKEGNMTTASDLLLDMQTRGLARAV 543

Query: 133 A 133
           +
Sbjct: 544 S 544



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           +LK    L  RG  P   ++N+++   C L ++  AV +   +     +P+ I++  LID
Sbjct: 40  SLKFLAYLVSRGYAPHRSSFNSVVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLID 99

Query: 71  AFCKEGRMDDATMMFSKMLEKGP---KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
             C+ G +  A ++   +        K ++V+++ L +G+ K + +   F VY  +    
Sbjct: 100 GHCRNGDIRSACLVLESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDEVF-VYMGVMLKC 158

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            SPN+            +G    A++ ++ M R+ + P+ +  + L D
Sbjct: 159 CSPNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLID 206



 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +L  A KL  ++   GLE D+  Y T+I G  S   + EA Q+F+++    + P+
Sbjct: 448 LCKQGNLVDAFKLKTKMVQEGLELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRSGVCPD 507

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           S  F +LI A+ KEG M  A+ +   M  +G    V    C
Sbjct: 508 SAVFDLLIRAYEKEGNMTTASDLLLDMQTRGLARAVSDADC 548


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 70/124 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A +L  ++  +G  PD  TY+ +I   C   ++++A  LF+++  V + P+  T+TI
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G ++ A  +F +M   G    VVTY+ LI  Y K++ +  A D++  M +  
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 128 ISPN 131
             PN
Sbjct: 389 CRPN 392



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 31/189 (16%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   ++ A  LF ++   G+ PD+ TY  +I  +C    +++A  LFE++  V   P  
Sbjct: 299 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTV 358

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+T LI A+ K  ++  A  +F +M++ G + N VTY  L+DG  K+ N+  AF+VY +
Sbjct: 359 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 418

Query: 123 M--------------CE--NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +              CE  + ++PN+            A +   A +L D+ML +G  P+
Sbjct: 419 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 478

Query: 155 GLLLSTLAD 163
            ++   L D
Sbjct: 479 HIVYDALID 487



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L   +   G EP+ I Y+ +I G+C   ++D A ++F ++T     P+
Sbjct: 454 LCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 513

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID   K+GR+D A  + S+ML+     NVVTY+ +IDG  +    + A  +  
Sbjct: 514 VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLS 573

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M E   SPN+            AG+   ++ L+  M R G  P+ +    L ++
Sbjct: 574 LMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH 628



 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L P+++TY  ++ G C  +++D A +L + +     +PN I +  LID FCK G++D A 
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +F +M + G   +V TY+ LID  FK   +  A  V  +M +++ +PN+          
Sbjct: 500 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 559

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G   +A++L   M   G  P+ +  + L D
Sbjct: 560 CRIGESEKALKLLSLMEEKGCSPNVVTYTALID 592



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 28/189 (14%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ----- 57
           +K   +  A  +F ++ D G  P+ +TY  ++ G C    + +A +++ KL         
Sbjct: 369 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS 428

Query: 58  -----------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
                      L PN +T+  L+D  CK  ++D A  +   ML  G + N + Y  LIDG
Sbjct: 429 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG 488

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + K+  + SA +V+ +M +    P++             GR   AM++   ML++   P+
Sbjct: 489 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548

Query: 155 GLLLSTLAD 163
            +  + + D
Sbjct: 549 VVTYTAMID 557



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 14/151 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALKL   + ++G  P+++TY  +I G     ++D ++ LF +++     PN +T+ +L
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +D A ++  +M +      +  Y C I G+  S++  ++  + EEM     
Sbjct: 626 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGT 683

Query: 129 SP------------NIAGRPTEAMQLYDSML 147
            P            + AGR   AM+L+  M+
Sbjct: 684 VPIAPVYGMLIDCFSKAGRLEIAMELHKEMM 714



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A K++G++       + +         C + + D+A QL +++      P++ T++ 
Sbjct: 234 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSK 293

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   +++ A ++F +M   G   +V TY+ LID + K+  ++ A  ++EEM    
Sbjct: 294 VITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 353

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            SP +            A +  +A  ++  M+  G  P+ +    L D
Sbjct: 354 CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVD 401



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 35/167 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE---------------- 45
           L K   +D +L LF Q++ +G  P+ +TY  +I   C+   LD+                
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 653

Query: 46  ------AVQLFEKLTCVQLK-----------PNSITFTILIDAFCKEGRMDDATMMFSKM 88
                 A+Q F K     L            P +  + +LID F K GR++ A  +  +M
Sbjct: 654 LQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 713

Query: 89  LE--KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           +E     K +   Y+ LI     +  ++ AF +Y EM      P ++
Sbjct: 714 MEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELS 760



 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  + D A+    ++      P+++TY T++ G+    +L    ++   +      PN
Sbjct: 117 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------ 115
              F  L+ ++C E     A  + ++M   G     V Y+  I      + + S      
Sbjct: 177 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 236

Query: 116 AFDVYEEMCENNI---SPNIA---------GRPTEAMQLYDSMLRNGIMPD 154
           A  +Y EM   N      N+A         G+  +A QL   M+R G +PD
Sbjct: 237 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPD 287



 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITFTI 67
           A+L +  ++   G  P    Y  +I  +    RL+ A++L +++  V   +K ++  +  
Sbjct: 670 ASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYAS 729

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           LI A C   ++++A  ++S+M  +G    +  + CLI G  + +    A  +   +C 
Sbjct: 730 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICH 787



 Score = 39.3 bits (90), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/106 (19%), Positives = 44/106 (41%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D +    +I G    +  DEA+    ++ C    PN +T+  L+  F K+ ++     + 
Sbjct: 106 DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRII 165

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           + M+ +G   N   ++ L+  Y   ++   A+ +   M      P 
Sbjct: 166 NMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 211



 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 3/115 (2%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L D G  P  +TYN ++    S  ++D   ++ ++++      +  T      A CKEGR
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
             DA  M  +   +  K + V  + +I G  ++     A      M  N+  PN+
Sbjct: 91  WADALDMIER---EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNV 142


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 12/146 (8%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
            G  PDI+TY+T+I  Y  +  L  A+++  ++    +K N+IT   ++DA CKE ++D+
Sbjct: 410 HGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDE 469

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------- 133
           A  +     ++G   + VTY  LI GYF+ + ++ AF++++EM    I+P +        
Sbjct: 470 AHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIG 529

Query: 134 -----GRPTEAMQLYDSMLRNGIMPD 154
                G+   AM+ +D +  +G++PD
Sbjct: 530 GLCHHGKTELAMEKFDELAESGLLPD 555



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNSITFTIL 68
           +A ++F  +   G+  D+ T+N ++ GYC   +L++A+ + E++     + P+++T+  +
Sbjct: 187 SAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTI 246

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           + A  K+GR+ D   +   M   G   N VTY+ L+ GY K  ++K AF + E M + NI
Sbjct: 247 LKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNI 306

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            P++            AG   E ++L D M    + PD +  +TL D
Sbjct: 307 LPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLID 353



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 4/129 (3%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH    + A++ F +L + GL PD  T+N+II GYC   R+++A + + +      KP++
Sbjct: 532 CHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDN 591

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T  IL++  CKEG  + A   F+ ++ +  + + VTY+ +I  + K + +K A+D+  E
Sbjct: 592 YTCNILLNGLCKEGMTEKALNFFNTLITER-EVDTVTYNTMISAFCKDKKLKEAYDLLSE 650

Query: 123 MCENNISPN 131
           M E  + P+
Sbjct: 651 MEEKRLEPD 659



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 68/130 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A  L      RG   D +TY T+I GY    ++++A ++++++  +++ P 
Sbjct: 461 LCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPT 520

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF  LI   C  G+ + A   F ++ E G   +  T++ +I GY K   ++ AF+ Y 
Sbjct: 521 VTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYN 580

Query: 122 EMCENNISPN 131
           E  +++  P+
Sbjct: 581 ESIKHSFKPD 590



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L     L   +   GL P+ +TYN ++ GYC L  L EA Q+ E +    + P+  
Sbjct: 252 KKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLC 311

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ILI+  C  G + +   +   M     + +VVTY+ LIDG F+      A  + E+M
Sbjct: 312 TYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQM 371

Query: 124 CENNISPN 131
             + + PN
Sbjct: 372 ENDGVKPN 379



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 48/202 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++   +    + PD+ TYN +I G C+   + E ++L + +  ++L+P+ +T+  
Sbjct: 291 LKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNT 350

Query: 68  LIDA-----------------------------------FCKEGRMDDATMMFSKMLE-K 91
           LID                                     CKE + ++ T    +++E  
Sbjct: 351 LIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMH 410

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------------EA 139
           G   ++VTY  LI  Y K  ++  A ++  EM +  I  N     T            EA
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEA 470

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
             L DS  + G + D +   TL
Sbjct: 471 HNLLDSAHKRGYIVDEVTYGTL 492



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 13/163 (7%)

Query: 5   ECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           E  L+ AL +  ++ ++  + PD +TYNTI+       RL +   L   +    L PN +
Sbjct: 217 EGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRV 276

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+  +CK G + +A  +   M +     ++ TY+ LI+G   + +++   ++ + M
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVM 336

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
               + P++             G   EA +L + M  +G+ P+
Sbjct: 337 KSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPN 379



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 2   LIKECHLDAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L KE   + AL  F  L T+R  E D +TYNT+I  +C   +L EA  L  ++   +L+P
Sbjct: 601 LCKEGMTEKALNFFNTLITER--EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEP 658

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSK 87
           +  T+  +I +  ++G++ +A  +  K
Sbjct: 659 DRFTYNSIITSLMEDGKLSEADELLKK 685



 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 23/106 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV------- 56
           K+  L  A  L  ++ ++ LEPD  TYN+II       +L EA +L +K +         
Sbjct: 637 KDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFSGKFGSMKRN 696

Query: 57  ----------------QLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                           +LK  +I ++ +I+  C  GR+ + +  ++
Sbjct: 697 LHLETEKNPATSESKEELKTEAIAYSDVINELCSRGRLKEHSTSYT 742


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P+++TY  ++ G C  +++ +A  L E +     +PN+I +  LID FCK  ++D+A  
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F KM+E+G   NV TYS LID  FK + +     V  +M EN+ +PNI           
Sbjct: 702 VFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
              +  EA +L   M   G  P+ +  + + D     +G  + C+
Sbjct: 762 KVAKTDEAYKLMLMMEEKGCKPNVVTYTAMID-GFGKAGKVDKCL 805



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A ++F ++ +RG  P++ TY+++I       RLD  +++  K+      PN +
Sbjct: 692 KAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIV 751

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +ID   K  + D+A  +   M EKG K NVVTY+ +IDG+ K+  +    +++ EM
Sbjct: 752 IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREM 811

Query: 124 CENNISPNIA 133
                +PN  
Sbjct: 812 GSKGCAPNFV 821



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G EP+ I Y+ +I G+C   +LDEA ++F K+      PN  T++ LID   K+ R+D  
Sbjct: 675 GCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLV 734

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             + SKMLE     N+V Y+ +IDG  K      A+ +   M E    PN+         
Sbjct: 735 LKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDG 794

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
              AG+  + ++L+  M   G  P+ +  + L ++
Sbjct: 795 FGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINH 829



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A K+  ++   G  PD  TY+ +I   C+ +R++ A  LF+++    + P+  T+TI
Sbjct: 470 FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTI 529

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID F K G +  A     +M+  G +  VVTY+ LI  Y K++ +  A +++E M    
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKG 589

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             PN+            +G   +A Q+Y  M  +  +PD
Sbjct: 590 CFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD  LK+  ++ +    P+I+ Y  +I G   + + DEA +L   +     KPN
Sbjct: 725 LFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPN 784

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID F K G++D    +F +M  KG   N VTY+ LI+    + ++  A+ + E
Sbjct: 785 VVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLE 844

Query: 122 EMCENNISPNIA-------GRPTE---AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           EM +     +++       G   E   ++ L + + +NG  P  LL   L D N   +G 
Sbjct: 845 EMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLID-NFVKAGR 903

Query: 172 QE 173
            E
Sbjct: 904 LE 905



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 28/185 (15%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  LF ++   G+ PD+ TY  +I  +     + +A    +++     +P  +T+T
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--- 123
            LI A+ K  ++  A  +F  M+ KG   NV+TY+ LIDGY KS N++ A  +Y  M   
Sbjct: 564 TLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGD 623

Query: 124 -----------CENNIS--PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLL 158
                       +NN++  PN+            A +  +A  L ++M  +G  P+ ++ 
Sbjct: 624 ADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVY 683

Query: 159 STLAD 163
             L D
Sbjct: 684 DALID 688



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A KL   + ++G +P+++TY  +I G+    ++D+ ++LF ++      PN
Sbjct: 760 LSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPN 819

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM--------------------------------L 89
            +T+T+LI+  C  G +D+A  +  +M                                +
Sbjct: 820 FVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEV 879

Query: 90  EK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--------------NIAG 134
           EK G    ++ Y  LID + K+  ++ A ++++E+   ++S               + A 
Sbjct: 880 EKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYAS 939

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           +   A +L+  M+R+G++PD
Sbjct: 940 KIDHAFELFYDMIRDGVIPD 959



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 79/162 (48%), Gaps = 15/162 (9%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           +++++   +CG+    + ++A ++  ++      P++ T++ +I   C   R+++A  +F
Sbjct: 456 NVVSFARCLCGF---GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLF 512

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
            +M   G   +V TY+ LID + K+  +K A +  +EM  +   P +            A
Sbjct: 513 KEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKA 572

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            + + A +L++ M+  G  P+ +  + L D   +S   ++ C
Sbjct: 573 KKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKAC 614



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 51/192 (26%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--------- 54
           K   +D  L+LF ++  +G  P+ +TY  +I   C+   LDEA  L E++          
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVS 856

Query: 55  --CVQLK----------------------PNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
             C  ++                      P  + + +LID F K GR++ A  +  +++ 
Sbjct: 857 SYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVIS 916

Query: 91  KG----PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------ 134
                  K N+  Y+ LI  +  +  +  AF+++ +M  + + P++              
Sbjct: 917 ASMSMTAKKNL--YTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVR 974

Query: 135 RPTEAMQLYDSM 146
           R  EA+QL DS+
Sbjct: 975 RWEEALQLSDSL 986



 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 7/136 (5%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LI++C      + AL+  G+L D G +P  +TYN ++  +   ++LD A  +  +++ +
Sbjct: 211 VLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSEL 270

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  +  T      A CK G+  +A  +  K   +    N + Y+ +I G  ++   + A
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNKMISGLCEASFFEEA 327

Query: 117 FDVYEEMCENNISPNI 132
            D    M   +  PN+
Sbjct: 328 MDFLNRMRSTSCIPNV 343



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 59/212 (27%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICG------------------------------- 36
            + A+    ++      P++ TY  ++CG                               
Sbjct: 324 FEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNS 383

Query: 37  ----YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM------DDATMMFS 86
               YC  +    A +L +K+   + KP  + + ILI + C  G +      + A   ++
Sbjct: 384 LVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYN 443

Query: 87  KMLEKGP---KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +ML  G    K NVV+++  + G+ K    + A+ V  EM  N   P+            
Sbjct: 444 EMLSAGTVLNKVNVVSFARCLCGFGK---FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            A R   A  L+  M   G++PD    + L D
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILID 532



 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ I YN +I G C  +  +EA+    ++      PN  T+ IL+     + ++     +
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--CE 125
            S M+ +G   +   ++ L+  Y KS +   A+ + ++M  CE
Sbjct: 366 LSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCE 408


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  P+++TYNT+I G      + +A  LF ++    + P+ +T+T +IDA CK   MD A
Sbjct: 222 GCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKA 281

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
            ++  +M+  G + N VTY+C+I GY  S   K    ++ EM    + PNI         
Sbjct: 282 ELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSS 341

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G+  EA + +DSM   G  P+ +  S L
Sbjct: 342 LCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVL 373



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 74/132 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F  +   G  PD+IT+N++I GY  + ++++A  + + +    ++P+
Sbjct: 518 LCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPD 577

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LID +C+ GR+DD  ++F +ML KG K   +TY  ++ G F       A  +  
Sbjct: 578 VVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCH 637

Query: 122 EMCENNISPNIA 133
           EM E+  + +I+
Sbjct: 638 EMIESGTTMDIS 649



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 87/173 (50%), Gaps = 13/173 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D  + +F Q+ ++G+ PD  TY  +I  +  + RL +A+  F ++  + LKP  I
Sbjct: 414 KRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGI 473

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            +  LI  FC  G +  A  + S+M+ +G P+ N+V ++ +I+   K   +  A D+++ 
Sbjct: 474 VYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDF 533

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +      P++             G+  +A  + D+M+  GI PD +  +TL D
Sbjct: 534 VIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLID 586



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 13/178 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +   +   G+EPD+++YNT+I GYC   R+D+ + LF ++    +KP +IT+ I
Sbjct: 559 IEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGI 618

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++     +GR   A  M  +M+E G   ++ T   ++ G  ++     A  +++++   N
Sbjct: 619 ILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMN 678

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           +  NIA             +  EA +L+DS+   G++P+      +   NL   GS E
Sbjct: 679 VKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIK-NLLKEGSVE 735



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A  +  Q+   G +P+ +TYN +I GY    +  E   +F ++T   L PN
Sbjct: 272 LCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPN 331

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T    + + CK G+  +A   F  M  KG K N+VTYS L+ GY          +++ 
Sbjct: 332 IVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFN 391

Query: 122 EMCENNISP-----NIA-------GRPTEAMQLYDSMLRNGIMPD 154
            M  N I       NI        G   E M ++  M   G++PD
Sbjct: 392 SMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPD 436



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +E  +  A  LF ++  +G+ PD++TY +II   C    +D+A  +  ++     +PN
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I  +   G+  +   MF +M  +G   N+VT +  +    K    K A + ++
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFD 356

Query: 122 EMCENNISPNIA-------GRPTEA-----MQLYDSMLRNGIMPDGLLLSTLAD 163
            M      PN+        G  TE      + L++SM  NGI+ D  + + + D
Sbjct: 357 SMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVID 410



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 17/176 (9%)

Query: 7   HLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           +L  A +L  ++  RG+  P+I+ +N+II   C   R+ EA  +F+ +  +  +P+ ITF
Sbjct: 487 NLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITF 546

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             LID +   G+++ A  +   M+  G + +VV+Y+ LIDGY ++  +     ++ EM  
Sbjct: 547 NSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLS 606

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPD----GLLLSTLADYN 165
             + P               GR   A ++   M+ +G   D    G++L  L   N
Sbjct: 607 KGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNN 662



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A + F  +  +G +P+++TY+ ++ GY +     + + LF  +    +  +
Sbjct: 342 LCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVAD 401

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F I+IDA+ K G MD+  ++F++M E+G   +  TY  +I  + +   +  A D + 
Sbjct: 402 QRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFN 461

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGI 151
           +M    + P             + G   +A +L   M+  GI
Sbjct: 462 QMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGI 503



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 65/125 (52%), Gaps = 3/125 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSITFTILI 69
              LFG+    GL+ D+I  + ++       R D+ V L   ++  + ++P++I++  ++
Sbjct: 138 GFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVV 197

Query: 70  DAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
              C++ R   A  +   M++K  G   NVVTY+ +I G F+   +  A +++ EM +  
Sbjct: 198 KTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQG 257

Query: 128 ISPNI 132
           + P++
Sbjct: 258 VVPDV 262



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 60/122 (49%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A K+  ++ + G   DI T   I+ G C  N  DEA+ +F+KL  + +K N      +I
Sbjct: 631 GAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMI 690

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           DA  K  + ++A  +F  +   G   N  TY  +I    K  +++ A +++  M ++  +
Sbjct: 691 DAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCA 750

Query: 130 PN 131
           P+
Sbjct: 751 PS 752



 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A+ +F +L    ++ +I   NT+I     + + +EA +LF+ ++   L PN+ T+ ++
Sbjct: 665 DEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVM 724

Query: 69  IDAFCKEGRMDDATMMFSKMLEKG--PKANVVTY 100
           I    KEG +++A  MFS M + G  P + ++ Y
Sbjct: 725 IKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNY 758


>gi|270342070|gb|ACZ74655.1| hypothetical protein [Phaseolus vulgaris]
 gi|270342076|gb|ACZ74661.1| hypothetical protein [Phaseolus vulgaris]
          Length = 485

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 9/161 (5%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+   D       ++ + G EPD++TYNT++  YC   RL++A  L++ +    + P
Sbjct: 118 VLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYVRGVMP 177

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N IT+T L++  C+EG++ +A  +F +M+ +G   ++V+Y+ L+ GY +   M+    + 
Sbjct: 178 NLITYTTLMNGLCEEGKVKEAHQLFHQMVHRGIAPDIVSYNTLVCGYCRHGEMQMCRSIL 237

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EM  N I P+          +   ++ +G   DG LLS L
Sbjct: 238 YEMIGNRICPD---------SITCRVIVDGYARDGKLLSAL 269



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   ++ AL+ F +  +  L P++I  N ++ G    N + +  +++ ++  + ++ N+
Sbjct: 50  VKVGMVEKALETFRRNIETRLIPNVIACNCLLSGLSRFNYITQCWEVYAEMGRLGVQRNA 109

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            TF I+     K+G  D  T    KM E+G + ++VTY+ L++ Y K + ++ AF +Y+ 
Sbjct: 110 YTFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKI 169

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           M    + PN+             G+  EA QL+  M+  GI PD +  +TL 
Sbjct: 170 MYVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVHRGIAPDIVSYNTLV 221



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 64/120 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L+ A  L+  +  RG+ P++ITY T++ G C   ++ EA QLF ++    + P+ +
Sbjct: 156 KKRRLEDAFYLYKIMYVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVHRGIAPDIV 215

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++  L+  +C+ G M     +  +M+      + +T   ++DGY +   + SA +  EE+
Sbjct: 216 SYNTLVCGYCRHGEMQMCRSILYEMIGNRICPDSITCRVIVDGYARDGKLLSALNTVEEL 275



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE    AA     ++++ G  P + TYN ++   C  N  +EA+ L   +    +K N
Sbjct: 294 LCKEGKPFAARSFLHRISEDGYTPKMNTYNKLVESLCEFNNEEEALILKSDMENKSMKVN 353

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA----- 116
           +  +  +I   C+  R  +A ++  +++      +V     LI GY +   +  A     
Sbjct: 354 AAAYRAVIICLCRVKRTVEAEVLLEEIIGSDMLPDVEISRALIKGYCEENKVDKAVSLLK 413

Query: 117 -----FDVYEEMCENNISPNI--AGRPTEAMQLYDSMLRNGIMPDGL 156
                F VY+    N +       G  TE M++ D +L+ G +P+ L
Sbjct: 414 LFAKEFQVYDTESYNAVVKVFCDVGNVTELMEVEDKLLKVGYVPNKL 460



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N + F +L+ A+ K G ++ A   F + +E     NV+  +CL+ G  +   +   ++VY
Sbjct: 38  NPVIFDMLVKAYVKVGMVEKALETFRRNIETRLIPNVIACNCLLSGLSRFNYITQCWEVY 97

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            EM    +  N              G   +     + M   G  PD +  +TL +
Sbjct: 98  AEMGRLGVQRNAYTFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTLVN 152



 Score = 37.0 bits (84), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 47/100 (47%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L  ++    + PD+     +I GYC  N++D+AV L +         ++ ++  ++  FC
Sbjct: 376 LLEEIIGSDMLPDVEISRALIKGYCEENKVDKAVSLLKLFAKEFQVYDTESYNAVVKVFC 435

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
             G + +   +  K+L+ G   N +T   +I G  K+  +
Sbjct: 436 DVGNVTELMEVEDKLLKVGYVPNKLTCRHVIHGLQKAMEL 475


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 49/204 (24%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLF-EKLTCVQLKPNSIT 64
            + AAL +  ++ +RG + P+  TY T+I G+C + R+DEAV++F E LT  ++KP ++ 
Sbjct: 200 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 259

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLE---------------------------------- 90
           +  LI  +C +G++D A +   +M+E                                  
Sbjct: 260 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 319

Query: 91  -KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
            KG   +V TY+ LI+G+ K  N+K A +++E M    +   +             G+  
Sbjct: 320 GKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQ 379

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTL 161
           E  +L+D  +R GI PD +L + L
Sbjct: 380 ETDKLFDEAVRRGIRPDLVLYNAL 403



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 91/163 (55%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  ++  +GL  D+ TYN +I G+C    + +A+++FE ++   ++   +T+T LI 
Sbjct: 311 AYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 370

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K+G++ +   +F + + +G + ++V Y+ LI+ +  S N+  AF++  EM +  I+P
Sbjct: 371 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 430

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +            + GR  EA +L D M + GI PD +  +TL
Sbjct: 431 DDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTL 473



 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 78/125 (62%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++D A ++ G++  + + PD +TYNT++ G C L R+DEA +L +++T   ++P+ +T+ 
Sbjct: 412 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 471

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI  +  +G + DA  + ++M+ KG    ++TY+ LI G  K+     A ++ +EM EN
Sbjct: 472 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 531

Query: 127 NISPN 131
            I+P+
Sbjct: 532 GITPD 536



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +    KLF +   RG+ PD++ YN +I  + +   +D A ++  ++   ++ P+
Sbjct: 372 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 431

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+   C  GR+D+A  +  +M ++G + ++VTY+ LI GY    ++K A  +  
Sbjct: 432 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRN 491

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM     +P +             G+  +A  +   M+ NGI PD
Sbjct: 492 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 536



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKPNSITFTILI 69
           AL+L  Q+      P+ +TYNT+I G+CS  R+  A+ +  ++     + PN  T+  +I
Sbjct: 173 ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVI 228

Query: 70  DAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             +CK GR+D+A  +F +ML KG  K   V Y+ LI GY     + +A    + M E  +
Sbjct: 229 SGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 288

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +  +A            GR TEA +L + M   G+  D
Sbjct: 289 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALD 326



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A KL  ++T RG++PD++TYNT+I GY     + +A+++  ++      P  +T+ 
Sbjct: 447 RVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 506

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            LI   CK G+ DDA  M  +M+E G   +  TY  LI+G
Sbjct: 507 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 546



 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++ ++G  P ++TYN +I G C   + D+A  + +++    + P+  T+  LI+
Sbjct: 486 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 545

Query: 71  AFCKE 75
               E
Sbjct: 546 GLTTE 550


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L+ A +L G++ + GL+PD+ TYNT++ G C         +L  K+     +P+ +
Sbjct: 400 RRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVV 459

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI  +CK G++D+A  +F  M E G + N V Y+ LID   KS++   A ++++EM
Sbjct: 460 TFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEM 519

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            E ++  N+               P +A +L D M      PD + +  L ++
Sbjct: 520 REKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILMEW 572



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           ++  A++LF ++ D G  PD I Y T+I G     RLD+A  +   +     + ++  + 
Sbjct: 333 NVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYN 392

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI  FC+  R+++A  +  +M E G + +V TY+ L+ G  K+ +  +  ++  +M + 
Sbjct: 393 ILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDG 452

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
              P++             G+  EA++++ SM  +GI P+ ++ +TL D+
Sbjct: 453 GCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDF 502



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   LD A  +   +   G + D   YN +I G+C   RL+EA +L  ++    L+P+
Sbjct: 363 LTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPD 422

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L+   CK G       +  KM++ G + +VVT+  LI GY K   +  A  ++ 
Sbjct: 423 VYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFR 482

Query: 122 EMCENNISPN 131
            M E+ I PN
Sbjct: 483 SMDESGIQPN 492



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G  P+ +TYN +   +C    +  A +L  K+   ++ PN++T   ++   C  GR+  A
Sbjct: 241 GCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAA 300

Query: 82  TMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------- 132
              F +     P+A  N VTYS L+  +  + N+  A +++ EM +   SP+        
Sbjct: 301 LEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMI 360

Query: 133 -----AGRPTEAMQLYDSMLRNGIMPDG 155
                AGR  +A  +  SM + G   D 
Sbjct: 361 SGLTQAGRLDDAWSMATSMKKAGFQLDA 388



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LK 59
           L +   L    +LF  + D  + P+++TY  ++ G C   R+ +A+ + + ++  +  + 
Sbjct: 147 LAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVC 206

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAF 117
           P+ +    ++D  CK GR+  A     + +    G   N VTY+CL   + ++ N+  A 
Sbjct: 207 PDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMAC 266

Query: 118 DVYEEMCENNISPN 131
           ++  +M +  ++PN
Sbjct: 267 ELVAKMEKERVTPN 280



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 20/171 (11%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           DAA  L   L      PD   +NT++        L    QLF  +    ++PN +T+ IL
Sbjct: 119 DAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGIL 178

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKA----NVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +   CK GR+ DA  +   M   GP++    +VV  + ++DG  K+  ++ A    EE  
Sbjct: 179 VKGLCKAGRVGDALSVLDGM--SGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERM 236

Query: 125 E--NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              +  +PN             AG    A +L   M +  + P+ + L+T+
Sbjct: 237 RSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTI 287


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 70/124 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A +L  ++  +G  PD  TY+ +I   C   ++++A  LF+++  V + P+  T+TI
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G ++ A  +F +M   G    VVTY+ LI  Y K++ +  A D++  M +  
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 128 ISPN 131
             PN
Sbjct: 389 CRPN 392



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 31/189 (16%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   ++ A  LF ++   G+ PD+ TY  +I  +C    +++A  LFE++  V   P  
Sbjct: 299 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTV 358

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+T LI A+ K  ++  A  +F +M++ G + N VTY  L+DG  K+ N+  AF+VY +
Sbjct: 359 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 418

Query: 123 M--------------CE--NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +              CE  + ++PN+            A +   A +L D+ML +G  P+
Sbjct: 419 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 478

Query: 155 GLLLSTLAD 163
            ++   L D
Sbjct: 479 HIVYDALID 487



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L   +   G EP+ I Y+ +I G+C   ++D A ++F ++T     P+
Sbjct: 454 LCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 513

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID   K+GR+D A  + S+ML+     NVVTY+ +IDG  +    + A  +  
Sbjct: 514 VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLS 573

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M E   SPN+            AG+   ++ L+  M R G  P+ +    L ++
Sbjct: 574 LMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH 628



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L P+++TY  ++ G C  +++D A +L + +     +PN I +  LID FCK G++D A 
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +F +M + G   +V TY+ LID  FK   +  A  V  +M +++ +PN+          
Sbjct: 500 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 559

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G   +A++L   M   G  P+ +  + L D
Sbjct: 560 CRIGESEKALKLLSLMEEKGCSPNVVTYTALID 592



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 28/189 (14%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ----- 57
           +K   +  A  +F ++ D G  P+ +TY  ++ G C    + +A +++ KL         
Sbjct: 369 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS 428

Query: 58  -----------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
                      L PN +T+  L+D  CK  ++D A  +   ML  G + N + Y  LIDG
Sbjct: 429 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG 488

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + K+  + SA +V+ +M +    P++             GR   AM++   ML++   P+
Sbjct: 489 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548

Query: 155 GLLLSTLAD 163
            +  + + D
Sbjct: 549 VVTYTAMID 557



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 14/151 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALKL   + ++G  P+++TY  +I G     ++D ++ LF +++     PN +T+ +L
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +D A ++  +M +      +  Y C I G+  S++  ++  + EEM     
Sbjct: 626 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGT 683

Query: 129 SP------------NIAGRPTEAMQLYDSML 147
            P            + AGR   AM+L+  M+
Sbjct: 684 VPIAPVYGMLIDCFSKAGRLEIAMELHKEMM 714



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A K++G++       + +         C + + D+A QL +++      P++ T++ 
Sbjct: 234 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSK 293

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   +++ A ++F +M   G   +V TY+ LID + K+  ++ A  ++EEM    
Sbjct: 294 VITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 353

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            SP +            A +  +A  ++  M+  G  P+ +    L D
Sbjct: 354 CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVD 401



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D +L LF Q++ +G  P+ +TY  +I   C+   LD+A  L  ++        
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 653

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +   I  F K      +  +  +M   G       Y  LID + K+  ++ A ++++
Sbjct: 654 LQGYRCAIQGFSKS--FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHK 711

Query: 122 EMCE--------NNISPN------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM E        N++  +      +A +  EA +LY  M R G +P+
Sbjct: 712 EMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 758



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  + D A+    ++      P+++TY T++ G+    +L    ++   +      PN
Sbjct: 117 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 176

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------ 115
              F  L+ ++C E     A  + ++M   G     V Y+  I      + + S      
Sbjct: 177 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 236

Query: 116 AFDVYEEMCENNI---SPNIA---------GRPTEAMQLYDSMLRNGIMPD 154
           A  +Y EM   N      N+A         G+  +A QL   M+R G +PD
Sbjct: 237 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPD 287



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITFTI 67
           A+L +  ++   G  P    Y  +I  +    RL+ A++L +++  V   +K ++  +  
Sbjct: 670 ASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYAS 729

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A C   ++++A  ++S+M  +G    +  + CLI G  + +    A  +   +C   
Sbjct: 730 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEG 789

Query: 128 IS 129
           ++
Sbjct: 790 VN 791



 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/106 (19%), Positives = 44/106 (41%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D +    +I G    +  DEA+    ++ C    PN +T+  L+  F K+ ++     + 
Sbjct: 106 DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRII 165

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           + M+ +G   N   ++ L+  Y   ++   A+ +   M      P 
Sbjct: 166 NMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 211



 Score = 39.3 bits (90), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 3/115 (2%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L D G  P  +TYN ++    S  ++D   ++ ++++      +  T      A CKEGR
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
             DA  M  +   +  K + V  + +I G  ++     A      M  N+  PN+
Sbjct: 91  WADALDMIER---EDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNV 142


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L  +L D G+ P++  YN +I   C   R D+A +LF+++    L+PN +T+ I
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A CK G ++DA  +F KM +KG K  V  Y+ LI+GY K  ++  A  +   M +  
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++P  A            G  +  M+L+  M   GI  +    + L
Sbjct: 439 LTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTAL 484



 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 71/128 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L   +   GL P   +Y+ +I G C    L   ++L  ++    +  N+ 
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 479

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI+ FCK+ +MD+A  +F KM++     N VT++ +I+GY    N++ AF +Y++M
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 124 CENNISPN 131
            E  + P+
Sbjct: 540 VEMGLKPD 547



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A +LF ++  RGLEP+ +TY  +I   C    +++A+ LF+K+    +K  
Sbjct: 348 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI+ +CK+G +D A  + S M+++G      +YS LI G  ++ ++ S  +++ 
Sbjct: 408 VYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHR 467

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM E  I+ N       I G     +  EA +L+D M+ + ++P+ +  + + +
Sbjct: 468 EMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIE 521



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 12/181 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L + ++L  ++ +RG+  +  T+  +I G+C   ++DEA +LF+K+    + PN +TF +
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM---- 123
           +I+ +C  G +  A  ++ +M+E G K +  TY  LI G   +  +  A +   ++    
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 124 -CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
              NN S           GR TE   L+D M   G+  D +  + +    L+    ++ C
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638

Query: 176 I 176
           +
Sbjct: 639 V 639



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  AL  + Q+   G  P+ +T+  +I   C    L  A  L +++    + PN
Sbjct: 663 LSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPN 722

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   +D F  EG M+ A  + S ML+ G  A++V+++ LI G  K+  ++ A D+  
Sbjct: 723 KFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMS 781

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           ++ E+  SP+     T            +A +L++ ML  G+ PD
Sbjct: 782 KITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ ++G++PD I Y  +I        + +A+  ++++      PN++T T+LI+  C
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 699

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----IS 129
           K G +  A ++  +ML      N  TY+C +D +    +M+ A D++  M + +    +S
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS 759

Query: 130 PNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            NI       AG+  EA+ L   +  +G  PD +  ST+
Sbjct: 760 FNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 798



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 47/201 (23%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICG--------------------YCSLN--------- 41
           A +L+ Q+ + GL+PD  TY ++I G                    Y  LN         
Sbjct: 532 AFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLY 591

Query: 42  ------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
                 R  E   L++++    +K + ++FTI++ A  K+   + + ++F +M E+G K 
Sbjct: 592 GFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKP 651

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           + + Y+C+ID   K +NM  A + +++M  +  SPN             +G    A  L 
Sbjct: 652 DDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLC 711

Query: 144 DSMLRNGIMPDGLLLSTLADY 164
             ML   ++P+    +   DY
Sbjct: 712 KEMLAGNVLPNKFTYNCFLDY 732



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 23/134 (17%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G    I+++N +I G C   ++ EA+ L  K+T     P+ I+++ +I   CK G ++ 
Sbjct: 751 QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINK 810

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAM 140
           A  ++++ML KG K +VV Y+  I                   C      N+ G   +A+
Sbjct: 811 AFELWNEMLYKGLKPDVVAYNIFI-----------------RWC------NVHGESDKAL 847

Query: 141 QLYDSMLRNGIMPD 154
            +Y +M+R+G+ P+
Sbjct: 848 GIYTNMIRSGVQPN 861



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+ L  ++T+ G  PD I+Y+TII   C +  +++A +L+ ++    LKP+
Sbjct: 767 LCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            + + I I      G  D A  +++ M+  G + N  TY  L+ G
Sbjct: 827 VVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 47/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL------------------ 43
           L K   +  A+++   + + G+  D +TY T++ G+C +  L                  
Sbjct: 243 LCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPS 302

Query: 44  -----------------DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                            +EA  L  KL  + + PN   +  LID  CK  R DDA  +F 
Sbjct: 303 EANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFK 362

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
           +M  +G + N VTY+ LI    K   ++ A  ++++M +  I   +             G
Sbjct: 363 EMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQG 422

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               A  L   M++ G+ P     S L
Sbjct: 423 SLDRARGLLSGMVKEGLTPTAASYSPL 449



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  LF ++   G+  D   Y   I  YC    LD A  L  ++    +K +
Sbjct: 173 LVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKAS 232

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ + +L+   CK  R+ +A  + + M+  G  A+ VTY  L+ G+ + + ++ A  +  
Sbjct: 233 AVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITH 292

Query: 122 EMCENNISPNIA 133
           +M      P+ A
Sbjct: 293 DMIRLGFVPSEA 304



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A  L  ++   G++   + YN ++ G C   R+ EAV++   +  + +  + +T+ 
Sbjct: 213 NLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYR 272

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  FC+   ++ A  +   M+  G   +    S +ID   K + ++ AF +  ++ + 
Sbjct: 273 TLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDL 332

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+              R  +A +L+  M   G+ P+ +  + L
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAIL 379



 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+  +  T + I+     + +   A  LF+K+    +  +   +T  I A+C+   +D A
Sbjct: 158 GITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGA 217

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
             +  +M  +G KA+ V Y+ L+ G  K+  ++ A +V   M    ++ +     T    
Sbjct: 218 RGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYG 277

Query: 138 --------EAMQLYDSMLRNGIMP 153
                    A+++   M+R G +P
Sbjct: 278 FCRMEELEMALRITHDMIRLGFVP 301


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PDI TYN +I     + ++ EAV++FE+L     KP+ I++  LI+   
Sbjct: 498 LYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLG 557

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A M F +M +KG   +VVTYS LI+ + K+  ++ A  +++ M      PNI 
Sbjct: 558 KNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 617

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      AGR  E + LY  +   G+ PD +  + L    LQS  +++
Sbjct: 618 TYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAILD--RLQSGSNRK 667



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 69/121 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F +L     +PDII+YN++I        +DEA   F ++    L P+ +T++ LI+
Sbjct: 530 AVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIE 589

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F K  +++ A  +F +M+ +G   N+VTY+ L+D   ++       D+Y ++ E  ++P
Sbjct: 590 CFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTP 649

Query: 131 N 131
           +
Sbjct: 650 D 650



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 63/123 (51%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  ++ ++   G + DI  YN ++       +LD + ++F+ +      P+  T+TI+
Sbjct: 251 DRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIM 310

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    K GR +++  +F +ML KG   N++ Y+ +I    KS  +  A  ++  M +NN 
Sbjct: 311 IRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNC 370

Query: 129 SPN 131
            PN
Sbjct: 371 RPN 373



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A   F ++ D+GL PD++TY+T+I  +   ++++ A  LF+++      PN
Sbjct: 556 LGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPN 615

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +T+ IL+D   + GR  +   +++K+ E+G   + +TY+ L
Sbjct: 616 IVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 657



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD + K+F  +  +   PD  TY  +I     + R +E++ LFE++      PN
Sbjct: 279 LAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPN 338

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I +  +I A  K G +D A ++F  M++   + N  TYS +++
Sbjct: 339 LIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILN 382



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 23/169 (13%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + +L LF ++  +G  P++I YNT+I        +D+A+ LF  +     +PN  T++I+
Sbjct: 321 EESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSII 380

Query: 69  IDAFCKE---GRMDDATMMFSKMLEKGPKANVV-TYS------------CLIDGYFKSQN 112
           ++    E   GR+D+   + +K + K   A +V T S            C +  +    +
Sbjct: 381 LNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGD 440

Query: 113 MKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +   + E +C         G+  EA++L   +   GI  D ++ +T+
Sbjct: 441 RDAYISMLESLCR-------GGKTVEAIELLSKVHEKGISTDTMMYNTV 482



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A +LF  +       D   Y +++   C   +  EA++L  K+    +  +
Sbjct: 416 LSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTD 475

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  ++    K  ++     ++ KM + GP  ++ TY+ LI    +   +K A +V+E
Sbjct: 476 TMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFE 535

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+  ++  P+I             G   EA   +  M   G+ PD +  STL +
Sbjct: 536 ELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIE 589



 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 9   DAALKLFGQLTD--RGLEPDIITYNTIICGYCSL---NRLDEAVQLFEKLTCVQLKPNSI 63
           D AL+ F + +        D  TY+ I+          R+D+  ++  ++   Q++    
Sbjct: 144 DLALQFFHRCSSLCPKFRHDAFTYSRILLMLSHSSSSKRIDQVREILSQMDRDQIRGTIS 203

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  ILI  F     ++  T +  K      + N  TY CL+  + +S++   AF+VY EM
Sbjct: 204 TVNILIKIFSSNEDLELCTGLIKKW---DLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEM 260

Query: 124 CENNISPNI 132
             N    +I
Sbjct: 261 WSNGYQLDI 269



 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/158 (18%), Positives = 67/158 (42%), Gaps = 12/158 (7%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
           G +    L  +  TY  ++  +      D A  ++ ++     + +   + +L+DA  K+
Sbjct: 223 GLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKD 282

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--- 132
            ++D +  +F  M  K    +  TY+ +I    K    + +  ++EEM     +PN+   
Sbjct: 283 EQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAY 342

Query: 133 ---------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                    +G   +A+ L+ +M++N   P+    S +
Sbjct: 343 NTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSII 380


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 68/110 (61%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G EP+I+ YN +I GYC+   ++ A+++FE +   +  PN  T+T LI   CK G+++ A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            ++FS+M+E G + NVVTY+ LI G     +++ AF +   M  N + PN
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPN 316



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A+ LF ++ + GLEP+++TY  +I G C+   L  A +L   +    L PN
Sbjct: 257 LCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPN 316

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF++LIDA CK  ++++A +    +++KG K N V Y+ LIDG  K+  + +A ++ +
Sbjct: 317 DWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQ 376

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M      P+       I G     + ++A  + + M+  GI    +  + + D  ++  
Sbjct: 377 KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREV 436

Query: 170 GSQ 172
           GS+
Sbjct: 437 GSE 439



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A    G L  +G++ + + Y ++I G C   ++D A +L +K+      P+
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPD 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + +++ LID  C++ ++  AT+M   M+EKG +A+ VTY+ +ID   +    +    +++
Sbjct: 387 AHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFD 446

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    I+P+I             GR  +A  +   M+  G+ P+ +  +TL
Sbjct: 447 KMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTL 498



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 35/165 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV-------------- 47
           L K   +DAA +L  ++   G  PD  +Y+++I G C   +L +A               
Sbjct: 362 LCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 48  ---------------------QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                                ++F+K+    + P+ +T+T+ + ++C+EGRM+DA  M  
Sbjct: 422 PVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIV 481

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           +M+++G   N+VTY+ LI GY     +  AF  +E M      PN
Sbjct: 482 QMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPN 526



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++F  +  RG      TY  ++ G      + EA+ +F  +      P++  +  
Sbjct: 123 LTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYAT 182

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C+ GR ++A ++  + +  G + N+V Y+ LIDGY  +  M+ A  V+E M  N 
Sbjct: 183 MVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNR 242

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            SPN+            +G+   AM L+  M+  G+ P+ +  + L
Sbjct: 243 CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTAL 288



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +F  +      PD   Y T++ G C   R +EA  L E+      +PN + +  LID
Sbjct: 161 AMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID 220

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G M+ A  +F  M       NV TY+ LI G  KS  ++ A  ++  M E  + P
Sbjct: 221 GYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP 280

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G    A +L   M  NG++P+    S L D
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLID 325



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++E   +   K+F ++   G+ PDI+TY   +  YC   R+++A  +  ++    + PN
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  +   G +  A   F  M+ KG K N  +Y+ L+    K  +  ++ D+++
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 13/171 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  R    ++ TY T+I  YC    +  A Q    L    L P+S  +T  +  +C+ G 
Sbjct: 63  LASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGM 122

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           +  A  +F  M  +G      TY+ L+ G   +  ++ A  V+  M  ++ +P+      
Sbjct: 123 LTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYAT 182

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                  AGR  EA  L +  + NG  P+ ++ + L D    ++G  EH +
Sbjct: 183 MVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID-GYCNAGEMEHAL 232



 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 52/110 (47%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   +T+R L      Y+  I   C ++RL+EA   F  +    L P+   +T +ID  C
Sbjct: 561 LLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCC 620

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +   + DA  +   M + G   ++ +Y  +I    +  N ++A +V+ ++
Sbjct: 621 RLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDL 670


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+     A  L   +  RG+E +++TYNTII GYC    L EA++L  K+     KP+
Sbjct: 501 LLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPD 560

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT  I+IDA+CK+G+++ A  +  ++       +++ Y+ LI G      ++ A     
Sbjct: 561 AITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLR 620

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNG 150
            M    ISPN+A        L+ +M  +G
Sbjct: 621 RMLSEGISPNVATWNVLVRHLFSNMGHSG 649



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  + ++   G+ P+++ YN ++ G CS   L +AV +F ++      PN  T++ LID
Sbjct: 335 ALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALID 394

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G +D A+ +++ M+  G   NVV Y+C++D   ++     A+ + E M   N  P
Sbjct: 395 GYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPP 454

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N             +GR   A++++D M  +G  P+    + L D
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLD 499



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A +++  +   G  P+++ Y  ++   C  +  ++A  L E +      PN++TF  
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I   C  GR+D A  +F +M   G   N  TY+ L+D   K +    AF + ++M    
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRG 521

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I  N+            AG   EA++L   M+  G  PD + ++ + D
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVID 569



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL+L G++  RG +PD IT N +I  YC   +++ A+QL ++L+  +  P+ I +T 
Sbjct: 542 LGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTS 601

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           LI   C    +++A +   +ML +G   NV T++ L+   F +     A
Sbjct: 602 LISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGA 650



 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 92/186 (49%), Gaps = 13/186 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE   + A +L  ++ ++G++P++I+Y TII        ++ ++ +  K+      PN  
Sbjct: 258 KEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLH 317

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI  F  +G   +A   + +M+ +G   NVV Y+ L+ G    +++  A  V+ +M
Sbjct: 318 TFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQM 377

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS-G 170
             N   PN+            AG    A ++++ M+ +G  P+ +  + + D   ++S  
Sbjct: 378 EINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMF 437

Query: 171 SQEHCI 176
           +Q +C+
Sbjct: 438 NQAYCL 443



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 42/183 (22%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           ++  +   G+EP++ TYN ++   C  NR+D A +L  +++     P+ +++T LI + C
Sbjct: 168 IYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLC 227

Query: 74  KEGRM------------------------------DDATMMFSKMLEKGPKANVVTYSCL 103
           K G++                              ++A  +  +M+ KG   NV++Y+ +
Sbjct: 228 KLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTI 287

Query: 104 IDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGI 151
           I+    + N++ +  V  +M     SPN            + G   EA+  +D M+R G+
Sbjct: 288 INALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGV 347

Query: 152 MPD 154
           +P+
Sbjct: 348 VPN 350



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P +  YN +I G C     +EA QL +++    + PN I++T +I+A    G ++ +  +
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
            +KM  +G   N+ T++ LI G+F       A D ++ M    + PN+            
Sbjct: 304 LAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCS 363

Query: 138 -----EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                +A+ +++ M  NG  P+    S L D
Sbjct: 364 KRSLGDAVSVFNQMEINGCCPNVRTYSALID 394



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ +T+NT I G C   R+D A+++F+++      PN+ T+  L+D+  K+ R  +A  +
Sbjct: 454 PNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGL 513

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-----NIA------ 133
              M  +G + N+VTY+ +I GY  +  +  A ++  +M      P     NI       
Sbjct: 514 VKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCK 573

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            G+   A+QL D +      PD +  ++L
Sbjct: 574 QGKVNIAIQLMDRLSAGKWHPDIIAYTSL 602



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALK F ++ D  ++P +  YN I+      NR      ++  +    ++PN  T+ IL
Sbjct: 128 EQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNIL 187

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE--- 125
           + A CK  R+D A  +  +M  KG   + V+Y+ LI    K   +K A ++         
Sbjct: 188 LKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVP 247

Query: 126 --NNISPNIAGRPT--EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             N +   +    T  EA QL D M+  GI P+ +  +T+ +  L  +G+ E
Sbjct: 248 VYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIIN-ALSDAGNVE 298



 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 56/130 (43%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +D    L  Q+   G+      + ++I  Y      ++A++ F ++   ++KP 
Sbjct: 86  LASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPT 145

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  ++DA   E R      ++S M + G + NV TY+ L+    K+  +  A  +  
Sbjct: 146 VKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLV 205

Query: 122 EMCENNISPN 131
           EM      P+
Sbjct: 206 EMSSKGCDPD 215


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A  L  +++  GL P+++ Y+T+I G+      DEA ++ ++++   ++PN
Sbjct: 323 LCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPN 382

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  LI   CK GRM  A+ +  +M + G  A+ +TY+ +I+G+ +  N + AF +  
Sbjct: 383 KITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLN 442

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM +  ISPN+             G    A  L + M+ +G+ P+  + + L
Sbjct: 443 EMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPL 494



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 72/125 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H+ AA+ +   +   GL PD + Y ++I G+C    +++AV L +++    ++P    + 
Sbjct: 643 HMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYN 702

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID FCK   +  A  +F+ ++ KG   N VTY+ LIDGY K+ +++ A D+Y EM   
Sbjct: 703 ALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTE 762

Query: 127 NISPN 131
            ++P+
Sbjct: 763 GVAPD 767



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L++A K+  ++ + G   +++TYNT+I G C    ++EA    +++    L P+  T+  
Sbjct: 259 LESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGA 318

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CK GR D A  +  +M   G   NVV YS LIDG+ +  N   AF + +EM    
Sbjct: 319 IINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAG 378

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           + PN              GR   A ++   M + G M D +  + + + +L+    +E
Sbjct: 379 VQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEE 436



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 67/120 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A+ L  ++  +G+EP I  YN +I G+C  + +  A  +F  + C  L PN +
Sbjct: 675 KAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCV 734

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID +CK G + DA  ++++ML +G   +   YS L  G   S +++ A  + EEM
Sbjct: 735 TYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEM 794



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 53/227 (23%)

Query: 2   LIKECHL-----DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           L+ E HL     + A  L  ++   G+ P++ TY+ II G C +   + A  L E++   
Sbjct: 423 LVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIAD 482

Query: 57  QLKPNSITFTILIDAFCKE-----------------------------------GRMDDA 81
            LKPN+  +  LI  +C+E                                   G+MD+A
Sbjct: 483 GLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEA 542

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--IAGRPTEA 139
              + +MLEKG + N  TY  LI GY  + N++ A  +  +M  + ++PN  I  +  E 
Sbjct: 543 IEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEG 602

Query: 140 MQLYD----------SMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
               D          SML  G+MPD  L   +  +NL SSG  +  +
Sbjct: 603 YFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVI-HNLSSSGHMQAAV 648



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E     A +   ++T   L PD+  YN++I G  ++ ++DEA++ ++++     +PN  
Sbjct: 500 REGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDF 559

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  +   G ++ A  +  +ML  G   N   Y+ +++GYFKS N++      + M
Sbjct: 560 TYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSM 619

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            E  + P+             +G    A+ +   + +NG++PD L+  +L
Sbjct: 620 LEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSL 669



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A ++  Q+T  G   D +TYN +I G+   +  +EA  L  ++    + PN
Sbjct: 393 LCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPN 452

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++I+I+  C+ G  + A+ +  +M+  G K N   Y+ LI GY +  +   A +  +
Sbjct: 453 VYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLK 512

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +M   N++P++             G+  EA++ YD ML  G  P+
Sbjct: 513 KMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPN 557



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L+        + ++GL PD   Y  +I    S   +  AV +   +    L P+S+
Sbjct: 605 KSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSL 664

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  LI  FCK   M+ A  +  +M +KG +  +  Y+ LIDG+ KS ++  A +++  +
Sbjct: 665 IYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSI 724

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
               + PN             AG   +A+ LY+ ML  G+ PD  + S LA
Sbjct: 725 ICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLA 775



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L+ A +L  Q+ + GL P+   Y  I+ GY   + L++     + +    L P++  + 
Sbjct: 573 NLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYG 632

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I+I      G M  A  + S + + G   + + Y  LI G+ K+ +M+ A  + +EM + 
Sbjct: 633 IVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKK 692

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P I            +   + A  +++S++  G+ P+ +  +TL D
Sbjct: 693 GIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLID 741



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +  +GL P+ +TY T+I GYC    + +A+ L+ ++    + P++  +++L  
Sbjct: 717 ARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAA 776

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                G +  A  +  +M+ +G  A + +++ L+ G+ K   ++        M + +I P
Sbjct: 777 GCSNSGDLQQALFITEEMIARG-YAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVP 835

Query: 131 NI 132
           ++
Sbjct: 836 SL 837



 Score = 35.4 bits (80), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL +  ++  RG    I ++NT++ G+C   +L E V+    +    + P+ +T   
Sbjct: 784 LQQALFITEEMIARGYA-IISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVEN 842

Query: 68  LIDAFCKEGRMDDATMMFSKMLEK 91
           ++    + G++ +A  +F ++ +K
Sbjct: 843 IVIGLGEAGKLSEAHTIFVELQQK 866


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 70/130 (53%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L+  L  F QL + GLEPD+ITYN +I G     RL+EAV LF ++    + PN
Sbjct: 940  LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 999

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              T+  LI    K G+  +A  M+ ++L KG K NV TY+ LI GY  S +  SA+  Y 
Sbjct: 1000 LYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYG 1059

Query: 122  EMCENNISPN 131
             M      PN
Sbjct: 1060 RMIVGGCLPN 1069



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K   ++ A  LF ++ + G + +   YN ++ G+      ++   LF+ +    + P+
Sbjct: 870  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 929

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++TI+ID  CK G+++D    F ++LE G + +++TY+ LIDG  KS+ ++ A  ++ 
Sbjct: 930  IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 989

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            EM +  I PN+            AG+  EA ++Y+ +L  G  P+
Sbjct: 990  EMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1034



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  LK+  ++  +G E   +TYNTII G     RL++A+ L+  L      P   
Sbjct: 802 KSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPC 861

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  L+D   K GR++DA  +F++MLE G KAN   Y+ L++G+  + N +    ++++M
Sbjct: 862 TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM 921

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            +  I+P+I            AG+  + +  +  +L  G+ PD +  + L D
Sbjct: 922 VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLID 973



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K CHL      F  + D+G+ PDI +Y  II   C   +L++ +  F +L  + L+P+ I
Sbjct: 913  KVCHL------FQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLI 966

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+ +LID   K  R+++A  +F++M +KG   N+ TY+ LI    K+     A  +YEE+
Sbjct: 967  TYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1026

Query: 124  CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
                  PN            ++G    A   Y  M+  G +P+
Sbjct: 1027 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1069



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  L L  ++   G++P++ +Y   I       R DEA ++  K+     KP+ I
Sbjct: 207 KRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVI 266

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T+LI   C  GR+ DA  +F KM +   K + VTY  L+D +  + + +S  +++  M
Sbjct: 267 THTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAM 326

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             +  + N+             GR  EA++++D M + GI+P+
Sbjct: 327 KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPE 369



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++  +G+ P+  +YN++I G+   +R  +A++LF+ +     KPN  T  + I+
Sbjct: 354 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFIN 413

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G    A   +  M  KG   +VV  + ++ G  KS  +  A  V+ E+    +SP
Sbjct: 414 YYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSP 473

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             A +  EA++++  M+ N  +PD L +++L D
Sbjct: 474 DTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLID 518



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A ++F QL +  LEP   TYNT++ G     ++ E + L E++      PN
Sbjct: 520 LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 579

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  ++D  CK G ++DA  M   M  KG   ++ +Y+ +I G  K +    AF ++ 
Sbjct: 580 LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFC 639

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           +M +  + P+ A   T    +  S ++ G+M + L +  + DY LQ
Sbjct: 640 QM-KKVLIPDYATLCT----ILPSFVKIGLMKEALHI--IKDYFLQ 678



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 47/195 (24%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT-- 64
             D A ++  ++ + G +PD+IT+  +I   C   R+ +A  +F K+     KP+ +T  
Sbjct: 245 RFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 304

Query: 65  ---------------------------------FTILIDAFCKEGRMDDATMMFSKMLEK 91
                                            +T +IDA C+ GR+ +A  MF +M +K
Sbjct: 305 TLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 364

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEA 139
           G      +Y+ LI G+ K+     A ++++ M  +   PN             +G   +A
Sbjct: 365 GIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKA 424

Query: 140 MQLYDSMLRNGIMPD 154
           +Q Y+ M   GI+PD
Sbjct: 425 IQRYELMKSKGIVPD 439



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ +  +  +G+ PD++  N ++ G     RL  A ++F +L  + + P++IT+T++I 
Sbjct: 424 AIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK 483

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K  + D+A  +F  M+E     +V+  + LID  +K+     A+ ++ ++ E N+ P
Sbjct: 484 CCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEP 543

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                          G+  E M L + M  +   P+ +  +T+ D
Sbjct: 544 TDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 588



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F +L   G+ PD ITY  +I      ++ DEAV++F  +      P+
Sbjct: 450 LAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPD 509

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    LID   K GR D+A  +F ++ E   +    TY+ L+ G  +   +K    + E
Sbjct: 510 VLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLE 569

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM  +N  PN+             G   +A+ +  SM   G +PD      L+ YN
Sbjct: 570 EMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD------LSSYN 619



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 19/159 (11%)

Query: 5   ECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           E H L    K FG     GL      YN++ICG    N +D A  LF ++  +   P+  
Sbjct: 738 EAHELVKKFKSFGVSLKTGL------YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEF 791

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ +L+DA  K  R+++   +  +M  KG ++  VTY+ +I G  KS+ ++ A D+Y  +
Sbjct: 792 TYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 851

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNG 150
                SP              AGR  +A  L++ ML  G
Sbjct: 852 MSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 890



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           + ++++  +   G   +++ Y  +I   C + R+ EA+++F+++    + P   ++  LI
Sbjct: 318 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 377

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             F K  R  DA  +F  M   GPK N  T+   I+ Y KS     A   YE M    I 
Sbjct: 378 SGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIV 437

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           P++            +GR   A +++  +   G+ PD
Sbjct: 438 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 474



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+ E  +D A  LF ++ + G  PD  TYN ++       R++E +++ E++     +  
Sbjct: 765 LVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYEST 824

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I    K  R++ A  ++  ++ +G      TY  L+DG  K+  ++ A +++ 
Sbjct: 825 YVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFN 884

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM E     N            IAG   +   L+  M+  GI PD
Sbjct: 885 EMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 929



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           M+IK C      D A+K+F  + +    PD++  N++I       R DEA ++F +L  +
Sbjct: 480 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEM 539

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L+P   T+  L+    +EG++ +   +  +M       N++TY+ ++D   K+  +  A
Sbjct: 540 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 599

Query: 117 FDVYEEMCENNISPNIA 133
            D+   M      P+++
Sbjct: 600 LDMLYSMTTKGCIPDLS 616



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L+ A+ LF ++  +G+ P++ TYN++I       +  EA +++E+L     KPN
Sbjct: 975  LGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1034

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100
              T+  LI  +   G  D A   + +M+  G   N  TY
Sbjct: 1035 VFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTY 1073



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL +   +T +G  PD+ +YNT+I G     R +EA  +F ++  V L P+
Sbjct: 590 LCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 648

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK-MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             T   ++ +F K G M +A  +     L+ G K +  +   L++G  K   ++ + +  
Sbjct: 649 YATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFA 708

Query: 121 EEMCENNIS 129
           E +  + I+
Sbjct: 709 EIIASSGIT 717



 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 28  ITYNTIICGYC-----SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + + T  C Y         R+ +  ++F+ +    +K N  TF  +      EG +  A 
Sbjct: 86  VAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAP 145

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           +    M E G   N  TY+ L+    KS   + A +VY  M  + + P++
Sbjct: 146 VALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSV 195



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K+  ++ +++    +   G+  D      +I   C   +  EA +L +K     +   
Sbjct: 695 ILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLK 754

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  +  LI     E  +D A  +F++M E G   +  TY+ L+D   KS  ++    V E
Sbjct: 755 TGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQE 814

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           EM               I+G     R  +A+ LY +++  G  P
Sbjct: 815 EMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSP 858


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 13/168 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLKPNSITFTI 67
           + A++L G ++  G  PDI+TYNT+I G+C  N L +A ++F+ + +     P+ +T+T 
Sbjct: 223 EKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTS 282

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +CK G+M +A+++   ML  G     VT++ L+DGY K+  M +A ++  +M    
Sbjct: 283 MISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFG 342

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             P++             G+  +  +L++ M   G+ P+    S L +
Sbjct: 343 CFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILIN 390



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 96/182 (52%), Gaps = 12/182 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +  A ++ G++   G  PD++T+ ++I GYC + ++++  +L+E++    + PN+ 
Sbjct: 324 KAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAF 383

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ILI+A CKE R+  A  +  ++  K        Y+ +IDG+ K+  +  A  + EEM
Sbjct: 384 TYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEM 443

Query: 124 CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +    P+            + GR  EA+ ++  M+  G  PD + +S+L    L++  +
Sbjct: 444 EKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMA 503

Query: 172 QE 173
           +E
Sbjct: 504 KE 505



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 66/118 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A +L GQL  + + P    YN +I G+C   +++EA+ + E++   + KP+
Sbjct: 392 LCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPD 451

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            ITFTILI   C +GRM +A  +F KM+  G   + +T S L+    K+   K A+ +
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ A+KLF +        D  T+N +I G C + + ++AV+L   ++     P+
Sbjct: 181 LVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPD 240

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+  LI  FCK   +  A  MF  +    G   +VVTY+ +I GY K+  M+ A  + 
Sbjct: 241 IVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLL 300

Query: 121 EEMCENNISP-NI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++M    I P N+           AG    A ++   M+  G  PD +  ++L D
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLID 355



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 13/149 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           +  N+++     L+R+++A++LFE+    Q   ++ TF ILI   C  G+ + A  +   
Sbjct: 172 MVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGG 231

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CENNISPNI------------AG 134
           M   G   ++VTY+ LI G+ KS  +K A ++++++   +  SP++            AG
Sbjct: 232 MSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAG 291

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +  EA  L D MLR GI P  +  + L D
Sbjct: 292 KMQEASVLLDDMLRLGIYPTNVTFNVLVD 320



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ P  +T+N ++ GY     +  A ++  K+      P+ +TFT LID +C+ G+++  
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQG 366

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN---------- 131
             ++ +M  +G   N  TYS LI+   K   +  A ++  ++   +I P           
Sbjct: 367 FRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDG 426

Query: 132 --IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              AG+  EA+ + + M +    PD +  + L
Sbjct: 427 FCKAGKVNEAIVIVEEMEKKKCKPDKITFTIL 458



 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TYN +    C     D A Q+FE +    + PNS     L+ +F ++G++  AT +  + 
Sbjct: 105 TYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQS 164

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-----CENNISPNI-------AGRP 136
            E      VV  + L++   K   ++ A  ++EE      C +  + NI        G+ 
Sbjct: 165 YEVEGCCMVV--NSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKA 222

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
            +A++L   M   G +PD +  +TL
Sbjct: 223 EKAVELLGGMSGFGCLPDIVTYNTL 247


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D ALK F ++    + P++ TYN +I   C   +L+ A+ + + +    L PN
Sbjct: 385 LGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPN 443

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT  I++D  CK  R+DDA  +F  +  K  + + VTY  LI+G  +   +  A+ +YE
Sbjct: 444 VITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYE 503

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M + N  PN              GR  +  ++Y+ MLR G  PD LLL+T  D
Sbjct: 504 QMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMD 557



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L  ++  +G EP ++TY ++I G   ++RLDEA  LFE+     ++ N +
Sbjct: 631 KSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVV 690

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K GR+D+A ++  ++++KG   NV T++CL+D   K++ +  A   ++ M
Sbjct: 691 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSM 750

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +   +PN       I G     +  +A   +  M + G  P+    +T+
Sbjct: 751 KDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800



 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 75/131 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A +LF  + ++G   D   YNT+I G+C   ++++A QL E++     +P 
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPT 653

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID   K  R+D+A M+F +   KG + NVV YS LIDG+ K   +  A+ + E
Sbjct: 654 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIME 713

Query: 122 EMCENNISPNI 132
           E+ +  ++PN+
Sbjct: 714 ELMQKGLTPNV 724



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 62/121 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  AL  F  + D    P+ ITY+ +I G C + + ++A   ++++     KPN
Sbjct: 734 LVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPN 793

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T +I    K G + +A  +F K  EKG  A+   Y+ +I+G   +     A+ ++E
Sbjct: 794 VFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFE 853

Query: 122 E 122
           E
Sbjct: 854 E 854



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L LF Q+ + G   ++  + T+I  +    R+D A+ L +++    L+P+ + + + 
Sbjct: 217 DCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVC 276

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K G++D A   F +M   G   + VTY+ +I    K+  +  A +++E M +N  
Sbjct: 277 IDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQ 336

Query: 129 SP------------NIAGRPTEAMQLYDSMLRNGIMP 153
            P             +AG+  +A  L +   R G +P
Sbjct: 337 VPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIP 373



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 48/210 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDI--------------------------------- 27
           +  +E  +DAAL L  ++    LEPD+                                 
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVL 303

Query: 28  --ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
             +TY ++I   C  +RL+EAV+LFE +   +  P +  +  +I  +   G+ +DA  + 
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLL 363

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
            +   KG   +VV+Y+C++    +   +  A   +EEM ++ I PN+            A
Sbjct: 364 ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKA 422

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           G+   A+ + D+M   G+ P+ + ++ + D
Sbjct: 423 GKLETALVVRDAMKDAGLFPNVITVNIMVD 452



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++ ++   G  PD++  NT +        +++   LF+++  +   P++ ++TILI   
Sbjct: 535 KIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGL 594

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G   +A  +F  M E+G   +   Y+ +IDG+ KS  +  A+ + EEM      P +
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTV 654

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         R  EA  L++     GI  + ++ S+L D
Sbjct: 655 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLID 697



 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IK   L  A      +      P    Y  +I    +    D  + LF+++  +    N
Sbjct: 175 FIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              FT LI  F +EGR+D A  +  +M     + +VV Y+  ID + K+  +  A+  + 
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFH 294

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           EM  N +  +             A R  EA++L++ M +N  +P
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVP 338



 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 70/161 (43%), Gaps = 12/161 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++  +++  G  P   T   I+  +    +L EA    + +  ++ +P    +T LI A 
Sbjct: 151 QILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGAL 210

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
                 D    +F +M E G   NV  ++ LI  + +   + +A  + +EM  N++ P++
Sbjct: 211 STSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDV 270

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       AG+   A + +  M  NG++ D +  +++
Sbjct: 271 VLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSM 311


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 69/124 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A ++  ++  +G  PD  TY  +I   C   R+D+A  LF+++  V + P+  T+TI
Sbjct: 433 FEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTI 492

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G ++ A   F +M   G   NVVTY+ L+  Y KS+ +  A D++  M  + 
Sbjct: 493 LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDA 552

Query: 128 ISPN 131
             PN
Sbjct: 553 CYPN 556



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 28/185 (15%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  LF ++   G+ PD+ TY  +I  +C    +++A   F+++      PN +T+T
Sbjct: 467 RVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYT 526

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-- 124
            L+ A+ K  ++  A  +F +M+      N +TYS LIDG  K+  ++ A +VY ++   
Sbjct: 527 ALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGT 586

Query: 125 --------------ENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLL 158
                          + ISPN+            A + ++A  L D+ML  G  P+ ++ 
Sbjct: 587 SDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVY 646

Query: 159 STLAD 163
             L D
Sbjct: 647 DALVD 651



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L   +   G EP+ I Y+ ++ G+C +  +D A ++F ++T     P+
Sbjct: 618 LCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPS 677

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID   K+GR+D A  + S+ML+     NVVTY+ ++DG  K+   + A ++  
Sbjct: 678 VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLS 737

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M +   SPN+            AG+    ++L+  M   G  P+
Sbjct: 738 LMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPN 782



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 16  GQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75
           G+ TD  + P+++TY  ++ G C   ++ +A  L + +     +PN I +  L+D FCK 
Sbjct: 598 GKDTDT-ISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKV 656

Query: 76  GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-- 133
           G +D A  +F +M + G   +V TY+ LID  FK   +  A  V  +M +++ +PN+   
Sbjct: 657 GEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTY 716

Query: 134 ----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                     G   +A+ L   M + G  P+ +  + L D
Sbjct: 717 TAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALID 756



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+  LD A+K+  Q+      P+++TY  ++ G C     ++A+ L   +      PN
Sbjct: 688 MFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPN 747

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            +T+T LID   K G++D    +F +M  KG   N VTY  LI+
Sbjct: 748 VVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILIN 791



 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 29/202 (14%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ----- 57
           +K   L  A  +F ++      P+ ITY+ +I G C    + +A +++ KL         
Sbjct: 533 LKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIES 592

Query: 58  -----------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
                      + PN +T+  L++  CK  ++ DA  +   ML  G + N + Y  L+DG
Sbjct: 593 DFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDG 652

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + K   + SA +V+  M +    P++             GR   AM++   ML++   P+
Sbjct: 653 FCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPN 712

Query: 155 GLLLSTLADYNLQSSGSQEHCI 176
            +  + + D  L  +G  E  +
Sbjct: 713 VVTYTAMVD-GLCKTGETEKAL 733



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 52/203 (25%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + AL L   +  +G  P+++TY  +I G     ++D  ++LF ++      PN
Sbjct: 723 LCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPN 782

Query: 62  SITFTILIDAFCKEGRMDDATMM----------------------FSK-------MLEK- 91
            +T+ ILI+  C  G +DDA ++                      FSK       +LE+ 
Sbjct: 783 YVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEM 842

Query: 92  -----GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP---------- 136
                 P A V  Y  LID + K+  +++A ++++EM E + S N+A +           
Sbjct: 843 ESHDTAPIAPV--YGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALC 900

Query: 137 -----TEAMQLYDSMLRNGIMPD 154
                 EA+ LY  M R GI+PD
Sbjct: 901 LSSQVEEAVALYSEMRRRGIVPD 923



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 38  CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97
           C + + ++A Q+ +++      P++ T+T +I   C+  R+D A ++F +M + G   +V
Sbjct: 428 CGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDV 487

Query: 98  VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------EAMQLYDS------ 145
            TY+ LID + K+  ++ A   ++EM     SPN+           ++ QLY +      
Sbjct: 488 YTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHR 547

Query: 146 MLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
           M+ +   P+ +  S L D   ++   Q+ C
Sbjct: 548 MVGDACYPNAITYSALIDGLCKAGEIQKAC 577



 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 1   MLIKECHLDA----ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +L++ C L      AL+  G+L D G  P  +TYN ++    S  +++ A ++ ++++  
Sbjct: 174 VLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSAS 233

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
               +  T      A CKEGR  DA  +  +   +  K + V  + +I G  ++     A
Sbjct: 234 GFCMDRSTVGSFAQALCKEGRWGDALDLLER---EDFKLDTVLCTQMISGLMEASLFNEA 290

Query: 117 FDVYEEMCENNISPNI 132
                 M  N+  PN+
Sbjct: 291 MSFLHRMRCNSYIPNV 306



 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT---FT 66
           A+L L  ++      P    Y  +I  +    RL+ A++L +++  V    N  +    T
Sbjct: 834 ASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHT 893

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI A C   ++++A  ++S+M  +G   ++  + CL+ G  +      A  +   +C+ 
Sbjct: 894 SLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQE 953

Query: 127 NIS 129
            ++
Sbjct: 954 GVN 956



 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 18/149 (12%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++TY T++ G+    +L    ++   +      P+   F  L+  +C       A  +
Sbjct: 304 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKL 363

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------AFDVYEEM-----CENNI-SPNI 132
           F++M   G     V Y+  I      + + +      A  VYEEM       N I + N 
Sbjct: 364 FNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANF 423

Query: 133 A------GRPTEAMQLYDSMLRNGIMPDG 155
           A      G+  +A Q+   M+R G +PD 
Sbjct: 424 ARCLCGVGKFEKAFQIVKEMMRKGFVPDA 452



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 53/220 (24%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  L    ++   +   G  P    +N+++  YC+      A +LF ++      P 
Sbjct: 316 FLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPG 375

Query: 62  SITFTILIDAFCKE-----------------------------------------GRMDD 80
            + + I I + C                                           G+ + 
Sbjct: 376 YVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEK 435

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A  +  +M+ KG   +  TY+ +I    +++ +  AF +++EM +  ++P++        
Sbjct: 436 AFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILID 495

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
               AG   +A   +D M   G  P+ +  + L    L+S
Sbjct: 496 SFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKS 535



 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     AL L   L     + D +    +I G    +  +EA+    ++ C    PN
Sbjct: 249 LCKEGRWGDALDL---LEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPN 305

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+  F K+ ++     + + M+ +G   +   ++ L+  Y  +++   A+ ++ 
Sbjct: 306 VVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFN 365

Query: 122 EM 123
            M
Sbjct: 366 RM 367


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+ ++   G  PDI TYN +I     + ++ EAV++FE+L     KP+ I++  LI+   
Sbjct: 503 LYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLG 562

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G +D+A M F +M +KG   +VVTYS LI+ + K+  ++ A  +++ M      PNI 
Sbjct: 563 KNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 622

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      AGR  E + LY  +   G+ PD +  + L    LQS  +++
Sbjct: 623 TYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAILD--RLQSGSNRK 672



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 64/123 (52%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  ++ ++  +G + DI  YN ++       +LD + ++F+ +      P+  T+TI+
Sbjct: 256 DRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIM 315

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    K GR +++  +F +ML KG   N++ Y+ +I    KS  +  A  ++  M +NN 
Sbjct: 316 IRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNC 375

Query: 129 SPN 131
            PN
Sbjct: 376 RPN 378



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 69/121 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F +L     +PDII+YN++I        +DEA   F ++    L P+ +T++ LI+
Sbjct: 535 AVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIE 594

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F K  +++ A  +F +M+ +G   N+VTY+ L+D   ++       D+Y ++ E  ++P
Sbjct: 595 CFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTP 654

Query: 131 N 131
           +
Sbjct: 655 D 655



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 59/100 (59%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A   F ++ D+GL PD++TY+T+I  +   ++++ A  LF+++      PN +
Sbjct: 563 KNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 622

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
           T+ IL+D   + GR  +   +++K+ E+G   + +TY+ L
Sbjct: 623 TYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 662



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD + K+F  +  +   PD  TY  +I     + R +E++ LFE++      PN
Sbjct: 284 LAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPN 343

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            I +  +I A  K G +D A ++F  M++   + N  TYS +++
Sbjct: 344 LIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILN 387



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 23/169 (13%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + +L LF ++  +G  P++I YNT+I        +D+A+ LF  +     +PN  T++I+
Sbjct: 326 EESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSII 385

Query: 69  IDAFCKE---GRMDDATMMFSKMLEKGPKANVV-TYS------------CLIDGYFKSQN 112
           ++    E   GR+D+   + +K + K   A +V T S            C +  +    +
Sbjct: 386 LNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGD 445

Query: 113 MKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +   + E +C         G+  EA++L   +   GI  D ++ +T+
Sbjct: 446 RDAYISMLESLCR-------GGKTVEAIELLSKVHEKGISTDTMMYNTV 487



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 76/167 (45%), Gaps = 15/167 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D   ++  Q+    +   I T N +I  + S   L+    L +K     L+ N+ T+ 
Sbjct: 187 RIDQVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKW---DLRLNAYTYR 243

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+ A  +    D A  ++ +M  KG + ++  Y+ L+D   K + +  ++ V+++M   
Sbjct: 244 CLLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLK 303

Query: 127 NISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + +P+              GR  E++ L++ ML  G  P+ +  +T+
Sbjct: 304 HCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTM 350



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H   A +LF  +       D   Y +++   C   +  EA++L  K+    +  +
Sbjct: 421 LSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTD 480

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  ++    K  ++     ++ KM + GP  ++ TY+ LI    +   +K A +V+E
Sbjct: 481 TMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFE 540

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+  ++  P+I             G   EA   +  M   G+ PD +  STL +
Sbjct: 541 ELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIE 594



 Score = 38.9 bits (89), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 9   DAALKLFGQLTD--RGLEPDIITYNTIICGYCSL---NRLDEAVQLFEKLTCVQLKPNSI 63
           D AL+ F + +        D  TY+ I+          R+D+  ++  ++   Q++    
Sbjct: 149 DLALQFFHRCSSLCPKFRHDAFTYSRILLMLSHSSSSKRIDQVREILSQMDRDQIRGTIS 208

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  ILI  F     ++  T +  K      + N  TY CL+  + +S++   AF+VY EM
Sbjct: 209 TVNILIKIFSSNEDLELCTGLIKKW---DLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEM 265


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A  L  +L D G+ P++  YN +I   C   R D+A +LF+++    L+PN
Sbjct: 313 LRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPN 372

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILI A CK G ++DA  +F KM +KG K  V  Y+ LI+GY K  ++  A  +  
Sbjct: 373 EVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLS 432

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  ++P  A            G  +  M+L+  M   GI  +    + L
Sbjct: 433 GMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTAL 484



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 71/128 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A  L   +   GL P   +Y+ +I G C    L   ++L  ++    +  N+ 
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 479

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI+ FCK+ +MD+A  +F KM++     N VT++ +I+GY    N++ AF +Y++M
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 124 CENNISPN 131
            E  + P+
Sbjct: 540 VEMGLKPD 547



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A +LF ++  RGLEP+ +TY  +I   C    +++A+ LF+K+    +K  
Sbjct: 348 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 407

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI+ +CK+G +D A  + S M+++G      +YS LI G  ++ ++ S  +++ 
Sbjct: 408 VYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHR 467

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPD 154
           EM E  I+ N       I G     +  EA +L+D M+ + ++P+
Sbjct: 468 EMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L + ++L  ++ +RG+  +  T+  +I G+C   ++DEA +LF+K+    + PN
Sbjct: 453 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF ++I+ +C  G +  A  ++ +M+E G K +  TY  LI G   +  +  A +   
Sbjct: 513 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 572

Query: 122 EM-----CENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           ++       NN S           GR TE   L+D M   G+  D +  + +    L+  
Sbjct: 573 DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQH 632

Query: 170 GSQEHCI 176
             ++ C+
Sbjct: 633 DKEKSCV 639



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE ++  AL  + Q+   G  P+ +T+  +I   C    L  A  L +++    + PN
Sbjct: 663 LSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPN 722

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+   +D F  EG M+ A  + S ML+ G  A++V+++ LI G  K+  ++ A D+  
Sbjct: 723 KFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMS 781

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           ++ E+  SP+     T            +A +L++ ML  G+ PD
Sbjct: 782 KITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ ++G++PD I Y  +I        + +A+  ++++      PN++T T+LI+  C
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 699

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----IS 129
           K G +  A ++  +ML      N  TY+C +D +    +M+ A D++  M + +    +S
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS 759

Query: 130 PNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            NI       AG+  EA+ L   +  +G  PD +  ST+
Sbjct: 760 FNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 798



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 47/205 (22%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICG--------------------YCSLN----- 41
           ++  A +L+ Q+ + GL+PD  TY ++I G                    Y  LN     
Sbjct: 528 NIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLT 587

Query: 42  ----------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                     R  E   L++++    +K + ++FTI++ A  K+   + + ++F +M E+
Sbjct: 588 ALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 647

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G K + + Y+C+ID   K +NM  A + +++M  +  SPN             +G    A
Sbjct: 648 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSA 707

Query: 140 MQLYDSMLRNGIMPDGLLLSTLADY 164
             L   ML   ++P+    +   DY
Sbjct: 708 ELLCKEMLAGNVLPNKFTYNCFLDY 732



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 23/134 (17%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           +G    I+++N +I G C   ++ EA+ L  K+T     P+ I+++ +I   CK G ++ 
Sbjct: 751 QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINK 810

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAM 140
           A  ++++ML KG K +VV Y+  I                   C      N+ G   +A+
Sbjct: 811 AFELWNEMLYKGLKPDVVAYNIFI-----------------RWC------NVHGESDKAL 847

Query: 141 QLYDSMLRNGIMPD 154
            +Y +M+R+G+ P+
Sbjct: 848 GIYTNMIRSGVQPN 861



 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A+ L  ++T+ G  PD I+Y+TII   C +  +++A +L+ ++    LKP+
Sbjct: 767 LCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            + + I I      G  D A  +++ M+  G + N  TY  L+ G
Sbjct: 827 VVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 47/207 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL------------------ 43
           L K   +  A+++   + + G+  D +TY T++ G+C +  L                  
Sbjct: 243 LCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPS 302

Query: 44  -----------------DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                            +EA  L  KL  + + PN   +  LID  CK  R DDA  +F 
Sbjct: 303 EANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFK 362

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
           +M  +G + N VTY+ LI    K   ++ A  ++++M +  I   +             G
Sbjct: 363 EMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQG 422

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               A  L   M++ G+ P     S L
Sbjct: 423 SLDRARGLLSGMVKEGLTPTAASYSPL 449



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A  LF ++   G+  D   Y   I  YC    LD A  L  ++    +K +
Sbjct: 173 LVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKAS 232

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ + +L+   CK  R+ +A  + + M+  G  A+ VTY  L+ G+ + + ++ A  +  
Sbjct: 233 AVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITH 292

Query: 122 EMCENNISPNIA 133
           +M      P+ A
Sbjct: 293 DMIRLGFVPSEA 304



 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +LD A  L  ++   G++   + YN ++ G C   R+ EAV++   +  + +  + +T+ 
Sbjct: 213 NLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYR 272

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+  FC+   ++ A  +   M+  G   +    S +ID   K + ++ AF +  ++ + 
Sbjct: 273 TLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDL 332

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + PN+              R  +A +L+  M   G+ P+ +  + L
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAIL 379



 Score = 39.7 bits (91), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+  +  T + I+     + +   A  LF+K+    +  +   +T  I A+C+   +D A
Sbjct: 158 GITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGA 217

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
             +  +M  +G KA+ V Y+ L+ G  K+  ++ A +V   M    ++ +     T    
Sbjct: 218 RGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYG 277

Query: 138 --------EAMQLYDSMLRNGIMP 153
                    A+++   M+R G +P
Sbjct: 278 FCRMEELEMALRITHDMIRLGFVP 301


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 70/124 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A +L  ++  +G  PD  TY+ +I   C   ++++A  LF+++  V + P+  T+TI
Sbjct: 204 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 263

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G ++ A  +F +M   G    VVTY+ LI  Y K++ +  A D++  M +  
Sbjct: 264 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 323

Query: 128 ISPN 131
             PN
Sbjct: 324 CRPN 327



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 31/189 (16%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   ++ A  LF ++   G+ PD+ TY  +I  +C    +++A  LFE++  V   P  
Sbjct: 234 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTV 293

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+T LI A+ K  ++  A  +F +M++ G + N VTY  L+DG  K+ N+  AF+VY +
Sbjct: 294 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 353

Query: 123 M--------------CE--NNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +              CE  + ++PN+            A +   A +L D+ML +G  P+
Sbjct: 354 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 413

Query: 155 GLLLSTLAD 163
            ++   L D
Sbjct: 414 HIVYDALID 422



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L   +   G EP+ I Y+ +I G+C   ++D A ++F ++T     P+
Sbjct: 389 LCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 448

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID   K+GR+D A  + S+ML+     NVVTY+ +IDG  +    + A  +  
Sbjct: 449 VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLS 508

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            M E   SPN+            AG+   ++ L+  M R G  P+ +    L ++
Sbjct: 509 LMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH 563



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L P+++TY  ++ G C  +++D A +L + +     +PN I +  LID FCK G++D A 
Sbjct: 375 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 434

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +F +M + G   +V TY+ LID  FK   +  A  V  +M +++ +PN+          
Sbjct: 435 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 494

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G   +A++L   M   G  P+ +  + L D
Sbjct: 495 CRIGESEKALKLLSLMEEKGCSPNVVTYTALID 527



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 28/189 (14%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ----- 57
           +K   +  A  +F ++ D G  P+ +TY  ++ G C    + +A +++ KL         
Sbjct: 304 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS 363

Query: 58  -----------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
                      L PN +T+  L+D  CK  ++D A  +   ML  G + N + Y  LIDG
Sbjct: 364 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG 423

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + K+  + SA +V+ +M +    P++             GR   AM++   ML++   P+
Sbjct: 424 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 483

Query: 155 GLLLSTLAD 163
            +  + + D
Sbjct: 484 VVTYTAMID 492



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 14/151 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALKL   + ++G  P+++TY  +I G     ++D ++ LF +++     PN +T+ +L
Sbjct: 501 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 560

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C  G +D A ++  +M +      +  Y C I G+  S++  ++  + EEM     
Sbjct: 561 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGT 618

Query: 129 SP------------NIAGRPTEAMQLYDSML 147
            P            + AGR   AM+L+  M+
Sbjct: 619 VPIAPVYGMLIDCFSKAGRLEIAMELHKEMM 649



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A K++G++       + +         C + + D+A QL +++      P++ T++ 
Sbjct: 169 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSK 228

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   +++ A ++F +M   G   +V TY+ LID + K+  ++ A  ++EEM    
Sbjct: 229 VITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 288

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            SP +            A +  +A  ++  M+  G  P+ +    L D
Sbjct: 289 CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVD 336



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 35/167 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE---------------- 45
           L K   +D +L LF Q++ +G  P+ +TY  +I   C+   LD+                
Sbjct: 529 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 588

Query: 46  ------AVQLFEKLTCVQLK-----------PNSITFTILIDAFCKEGRMDDATMMFSKM 88
                 A+Q F K     L            P +  + +LID F K GR++ A  +  +M
Sbjct: 589 LQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 648

Query: 89  LE--KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           +E     K +   Y+ LI     +  ++ AF +Y EM      P ++
Sbjct: 649 MEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELS 695



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  + D A+    ++      P+++TY T++ G+    +L    ++   +      PN
Sbjct: 52  LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 111

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------ 115
              F  L+ ++C E     A  + ++M   G     V Y+  I      + + S      
Sbjct: 112 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 171

Query: 116 AFDVYEEMCENNI---SPNIA---------GRPTEAMQLYDSMLRNGIMPD 154
           A  +Y EM   N      N+A         G+  +A QL   M+R G +PD
Sbjct: 172 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPD 222



 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITFTI 67
           A+L +  ++   G  P    Y  +I  +    RL+ A++L +++  V   +K ++  +  
Sbjct: 605 ASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYAS 664

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI A C   ++++A  ++S+M  +G    +  + CLI G  + +    A  +   +C   
Sbjct: 665 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEG 724

Query: 128 IS 129
           ++
Sbjct: 725 VN 726



 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/106 (19%), Positives = 44/106 (41%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D +    +I G    +  DEA+    ++ C    PN +T+  L+  F K+ ++     + 
Sbjct: 41  DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRII 100

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           + M+ +G   N   ++ L+  Y   ++   A+ +   M      P 
Sbjct: 101 NMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 146


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L  + ++F  +   G+  D+ TY T I  YC   ++DEAV LF K+    + PN
Sbjct: 216 LVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPN 275

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LID  CK GR+++A M   +M+E     ++VTY  L++G  K +    A  V  
Sbjct: 276 VVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLV 335

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM     SPN              G   +A+++ D M   G+ P+ +  +TL
Sbjct: 336 EMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTL 387



 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +   A KL   +    + P I TY++II G C  + ++EA  +FE++    L PN  
Sbjct: 639 KAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVF 698

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T LI  +CK G+MD    +  +M     + N +TY+ +IDGY K  N K A  +  EM
Sbjct: 699 CYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEM 758

Query: 124 CENNISPN 131
             N ISP+
Sbjct: 759 IANGISPD 766



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 65/107 (60%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  +F ++ + GL P++  Y  +I GYC L ++D+   + +++T   ++PN IT+TI
Sbjct: 678 VEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTI 737

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
           +ID +CK G   +AT + ++M+  G   + VTY+ L  GY K   ++
Sbjct: 738 MIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTVLQKGYCKENELE 784



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 79/149 (53%), Gaps = 12/149 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ +RGL  D I+YNT+I G C   +++EA +L EK+     KP++ T+  L+     +G
Sbjct: 512 EMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKG 571

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-------- 128
           +MDD   +  +  + G   N+ TY+ +++GY  +  + +A  ++ ++  N +        
Sbjct: 572 KMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYN 631

Query: 129 ----SPNIAGRPTEAMQLYDSMLRNGIMP 153
               + + AG  TEA +L D+M  + I P
Sbjct: 632 ILIAAHSKAGNFTEAFKLRDAMRSSNIHP 660



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 66/130 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL   G++ +  + P ++TY  ++ G     + DEA  +  ++      PN
Sbjct: 286 LCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPN 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F  LID + ++G MDDA  +   M  KG K N VT++ L+ G+ ++  M+ A  V E
Sbjct: 346 EFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLE 405

Query: 122 EMCENNISPN 131
            +  N +S N
Sbjct: 406 YLLSNVLSVN 415



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D   ++  +  D G+ P+I TY  ++ GYC+ +R+D AV LF KL   +++ + + + I
Sbjct: 573 MDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNI 632

Query: 68  LIDAFCKEGR-----------------------------------MDDATMMFSKMLEKG 92
           LI A  K G                                    +++A  +F +M  +G
Sbjct: 633 LIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEG 692

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
              NV  Y+ LI GY K   M     + +EM  N I PN              G   EA 
Sbjct: 693 LMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEAT 752

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
           +L + M+ NGI PD +  + L
Sbjct: 753 KLLNEMIANGISPDTVTYTVL 773



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A KL  ++  +G +PD  TYN ++ G     ++D+  ++  +     + PN  
Sbjct: 534 KSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIY 593

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+ ++++ +C   R+D+A  +F+K++    + + V Y+ LI  + K+ N   AF + + M
Sbjct: 594 TYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAM 653

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
             +NI P I    +            EA  +++ M   G+MP+
Sbjct: 654 RSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPN 696



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   F   T +G+ P + + N ++      N L ++ ++F+ +    +  +  T+   I+
Sbjct: 190 AFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAIN 249

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A+CK G++D+A  +F KM E G   NVVTY+ LIDG  KS  ++ A      M EN ++P
Sbjct: 250 AYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNP 309

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++              +  EA  +   M   G  P+  + + L D
Sbjct: 310 SLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALID 354



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 52/212 (24%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++ ++D AL++   +T +GL+P+ +T+NT++ G+C  N++++A Q+ E L    L  N  
Sbjct: 358 RKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNED 417

Query: 64  TFTILIDAFCKEGRMDDATMMFSKML---------------------------------- 89
             + ++   CK  + D A  +   +L                                  
Sbjct: 418 ACSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRL 477

Query: 90  --EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGR 135
             +KG  AN  T + L+ G  +  NM+  F V +EM E     + IS N        +G+
Sbjct: 478 ADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGK 537

Query: 136 PTEAMQLYDSMLRNGIMPD----GLLLSTLAD 163
             EA +L + M++ G  PD      L+  LAD
Sbjct: 538 IEEAFKLKEKMMKQGFKPDTYTYNFLMKGLAD 569



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 14/158 (8%)

Query: 7   HLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           HL+A + L+ +L D+ GL  +  T N ++ G C    ++E   + +++    L  + I++
Sbjct: 467 HLEA-IDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISY 525

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
             LI   CK G++++A  +  KM+++G K +  TY+ L+ G      M     V  E  +
Sbjct: 526 NTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKD 585

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGI 151
           + + PNI            A R   A+ L++ ++ N +
Sbjct: 586 HGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKV 623



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    D A  +  ++  +G  P+   +N +I GY     +D+A+++ + +T   LKPN
Sbjct: 321 LVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPN 380

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T   L+  FC+  +M+ A  +   +L      N    S ++    KS    SA  + +
Sbjct: 381 AVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVK 440

Query: 122 EMCENNISPN 131
            +   NI  N
Sbjct: 441 ALLLRNIKVN 450



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LK 59
           +L K    D+ALK+   L  R ++ +      ++CG C   +  EA+ L+ +L   + L 
Sbjct: 425 LLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLA 484

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            N+ T   L+   C+ G M++   +  +M+E+G   + ++Y+ LI G  KS  ++ AF +
Sbjct: 485 ANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKL 544

Query: 120 YEEMCENNISPN 131
            E+M +    P+
Sbjct: 545 KEKMMKQGFKPD 556



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 7/100 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D    +  ++T   ++P+ ITY  +I GYC +    EA +L  ++    + P+++T+T
Sbjct: 712 QMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYT 771

Query: 67  ILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLID 105
           +L   +CKE  +++     + + LE+      +TY+ L+D
Sbjct: 772 VLQKGYCKENELEETLQGDTAVPLEE------ITYTTLVD 805


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K   +  A+ L  ++T  G  P I TYN ++ G C + RL+EA+ L  K+      P
Sbjct: 268 WLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 327

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+T LID   KE R  +A  +F +M  +G   + V Y+ LI G  ++  +  A  VY
Sbjct: 328 DVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVY 387

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M  +   P++            AGR   A++++ SM   G+ P+ ++ S L
Sbjct: 388 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 440



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 9/157 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + AA+++F  +  RGL P+ + Y+ +I G C   ++D A+++  ++      P+
Sbjct: 409 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 468

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+ ILID  CK G ++ A   F +MLE G K +V TY+ LI G  K+ N  +A  V +
Sbjct: 469 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLD 528

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           +M  +    +          L D + ++G +  G +L
Sbjct: 529 DMSSSRFVYS---------SLVDGLCKSGKLEGGCML 556



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  A  L  + T  G   DI TY  I+       ++ EAV L EK+T     P 
Sbjct: 234 LVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPT 293

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  L++  CK GR+++A  +  K+++ G   +VVTY+ LIDG  K +    A+ +++
Sbjct: 294 IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 353

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    ++ +              G+  +A  +Y +M  +G +PD + LST+ D
Sbjct: 354 EMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 407



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 72/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A  ++  +T  G  PD++T +T+I G     R+  AV++F+ +    L PN
Sbjct: 374 LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPN 433

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ++ LI   CK  +MD A  M ++M +     + +TY+ LIDG  KS ++++A   ++
Sbjct: 434 EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFD 493

Query: 122 EMCENNISPNI 132
           EM E    P++
Sbjct: 494 EMLEAGCKPDV 504



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A KLF ++  RGL  D + Y  +I G     ++ +A  +++ +T     P+
Sbjct: 339 LGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPD 398

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T + +ID   K GR+  A  +F  M  +G   N V YS LI G  K++ M  A ++  
Sbjct: 399 VVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLA 458

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M +   +P+             +G    A   +D ML  G  PD      +  YN+  S
Sbjct: 459 QMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD------VYTYNILIS 512

Query: 170 G 170
           G
Sbjct: 513 G 513



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 49/210 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++AA   F ++ + G +PD+ TYN +I G C     D A  + + ++  +    
Sbjct: 479 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRF--- 535

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGP--------------KANVV--------- 98
              ++ L+D  CK G+++   M+F +M   G               KAN V         
Sbjct: 536 --VYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNA 593

Query: 99  ----------TYSCLIDGYFKSQNMKSAFDVYEEMCE----NNISPNI-------AGRPT 137
                      Y+ +I    KS  +     VY+EM      + ++ N        A R  
Sbjct: 594 IRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMTRWWKPDRVTYNALLNGMIGANRMD 653

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            A   Y  M   G +P   +L  LAD  L+
Sbjct: 654 RAHYYYLEMTGRGYVPPVSILHKLADDRLK 683



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 47/188 (25%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKL-----TCVQLKPNSI-------------- 63
             PD+ T+N +I GYC     +EA  +  ++         LK +++              
Sbjct: 150 FRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAA 209

Query: 64  ----------------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
                           TF+ILI+   K G M  A  +  +    G   ++ TY+ +++  
Sbjct: 210 MDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWL 269

Query: 108 FKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155
            K++ ++ A  + E++  N  +P IA            GR  EA+ L   ++ NG  PD 
Sbjct: 270 AKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 329

Query: 156 LLLSTLAD 163
           +  ++L D
Sbjct: 330 VTYTSLID 337



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 48/196 (24%)

Query: 20  DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG--- 76
           D G+ P + T+N ++ G C   ++  A+  FE +    +  ++ TF+ILI+   K G   
Sbjct: 183 DFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVR-RSMPVSAATFSILINGLVKAGMMI 241

Query: 77  --------------------------------RMDDATMMFSKMLEKGPKANVVTYSCLI 104
                                           ++ +A  +  K+   G    + TY+ L+
Sbjct: 242 QAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALL 301

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIM 152
           +G  K   ++ A D+  ++ +N  +P++              R  EA +L+  M   G+ 
Sbjct: 302 NGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLA 361

Query: 153 PDGLLLSTLADYNLQS 168
            D +  + L    LQ+
Sbjct: 362 LDTVCYTALIRGLLQT 377



 Score = 39.3 bits (90), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 26/173 (15%)

Query: 2   LIKECHLDAALKLFGQLTDR---------------GLEPDIITYNTIICGYCSLNRLDEA 46
           L +E   DA +K+F  L D                G +  + T N ++  +    R  EA
Sbjct: 79  LRREISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREA 138

Query: 47  VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLID 105
             L +       +P+  T+ +LI  +C     ++A  +  +M E  G   ++ T++ ++ 
Sbjct: 139 GNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLH 198

Query: 106 GYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
           G  KS  + +A D +E +  +         P  A     S+L NG++  G+++
Sbjct: 199 GLCKSGKVLAAMDHFEAVRRS--------MPVSAATF--SILINGLVKAGMMI 241


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D ALK F ++    + P++ TYN +I   C   +L+ A+ + + +    L PN
Sbjct: 385 LGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPN 443

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT  I++D  CK  R+DDA  +F  +  K  + + VTY  LI+G  +   +  A+ +YE
Sbjct: 444 VITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYE 503

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M + N  PN              GR  +  ++Y+ MLR G  PD LLL+T  D
Sbjct: 504 QMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMD 557



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A +L  ++  +G EP ++TY ++I G   ++RLDEA  LFE+     ++ N +
Sbjct: 631 KSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVV 690

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            ++ LID F K GR+D+A ++  ++++KG   NV T++CL+D   K++ +  A   ++ M
Sbjct: 691 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSM 750

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +   +PN       I G     +  +A   +  M + G  P+    +T+
Sbjct: 751 KDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 75/131 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K      A +LF  + ++G   D   YNT+I G+C   ++++A QL E++     +P 
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPT 653

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID   K  R+D+A M+F +   KG + NVV YS LIDG+ K   +  A+ + E
Sbjct: 654 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIME 713

Query: 122 EMCENNISPNI 132
           E+ +  ++PN+
Sbjct: 714 ELMQKGLTPNV 724



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 62/121 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   +  AL  F  + D    P+ ITY+ +I G C + + ++A   ++++     KPN
Sbjct: 734 LVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPN 793

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T +I    K G + +A  +F K  EKG  A+   Y+ +I+G   +     A+ ++E
Sbjct: 794 VFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFE 853

Query: 122 E 122
           E
Sbjct: 854 E 854



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L LF Q+ + G   ++  + T+I  +    R+D A+ L +++    L+P+ + + + 
Sbjct: 217 DCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVC 276

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID F K G++D A   F +M   G   + VTY+ +I    K+  +  A +++E M +N  
Sbjct: 277 IDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQ 336

Query: 129 SP------------NIAGRPTEAMQLYDSMLRNGIMP 153
            P             +AG+  +A  L +   R G +P
Sbjct: 337 VPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIP 373



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 48/210 (22%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDI--------------------------------- 27
           +  +E  +DAAL L  ++    LEPD+                                 
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVL 303

Query: 28  --ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
             +TY ++I   C  +RL+EAV+LFE +   +  P +  +  +I  +   G+ +DA  + 
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLL 363

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
            +   KG   +VV+Y+C++    +   +  A   +EEM ++ I PN+            A
Sbjct: 364 ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKA 422

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           G+   A+ + D+M   G+ P+ + ++ + D
Sbjct: 423 GKLETALVVRDAMKDAGLFPNVITVNIMVD 452



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++ ++   G  PD++  NT +        +++   LF+++  +   P++ ++TILI   
Sbjct: 535 KIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGL 594

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G   +A  +F  M E+G   +   Y+ +IDG+ KS  +  A+ + EEM      P +
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTV 654

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         R  EA  L++     GI  + ++ S+L D
Sbjct: 655 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLID 697



 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IK   L  A      +      P    Y  +I    +    D  + LF+++  +    N
Sbjct: 175 FIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              FT LI  F +EGR+D A  +  +M     + +VV Y+  ID + K+  +  A+  + 
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFH 294

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           EM  N +  +             A R  EA++L++ M +N  +P
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVP 338



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 70/161 (43%), Gaps = 12/161 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++  +++  G  P   T   I+  +    +L EA    + +  ++ +P    +T LI A 
Sbjct: 151 QILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGAL 210

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
                 D    +F +M E G   NV  ++ LI  + +   + +A  + +EM  N++ P++
Sbjct: 211 STSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDV 270

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       AG+   A + +  M  NG++ D +  +++
Sbjct: 271 VLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSM 311


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I E  ++ A+KL  ++  RGL PD+ TYN II G C    ++ A +L   LT    KP+ 
Sbjct: 218 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDV 277

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           I++ IL+ AF  +G+ D+   + ++M  +G + N VTYS LI    +   +  A  V + 
Sbjct: 278 ISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKV 337

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           M E  ++P+              GR   A+ + D M+ NG +PD
Sbjct: 338 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPD 381



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            + +   D   KL  ++  RG EP+ +TY+ +I   C   R+DEA+ + + +   +L P+
Sbjct: 287 FLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPD 346

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + ++  LI A CKEGR+D A  +   M+  G   ++V Y+ ++    K+ N   A +++ 
Sbjct: 347 TYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFN 406

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++      PN++            G  + A+ +  +M+  G+ PD +  ++L
Sbjct: 407 KLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSL 458



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  ++ A +L   LT +G +PD+I+YN ++  + +  + DE  +L  ++     +PN +
Sbjct: 254 KEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 313

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ILI + C+ GR+D+A  +   M+EK    +  +Y  LI    K   +  A  + + M
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
             N   P+I             G   +A+++++ +   G  P+
Sbjct: 374 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPN 416



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 23/142 (16%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +   +  +G++PD ITYN++I   C    ++EA+ L + +     +P  I++ I++ 
Sbjct: 436 ALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLL 495

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK  R+DDA  MF++M+EKG + N  TY  LI+G                        
Sbjct: 496 GLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI----------------------- 532

Query: 131 NIAGRPTEAMQLYDSMLRNGIM 152
             AG  TEAM+L +S+    ++
Sbjct: 533 GFAGWRTEAMELANSLFSRDVI 554



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++AA ++  ++  RG  PDI+TYN +I   C+  +L  A+++ ++L      P  IT+T
Sbjct: 152 RIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYT 211

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILI+A   EG +++A  +  +ML +G   ++ TY+ +I G  K   ++ A ++   +   
Sbjct: 212 ILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSK 271

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              P++             G+  E  +L   M   G  P+ +  S L
Sbjct: 272 GCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSIL 318



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ +   EPD+  YN +I G+C +NR++ A Q+  ++      P+ +T+ I+I + C   
Sbjct: 127 EILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
           ++  A  +  ++L       V+TY+ LI+       +  A  + EEM    + P++    
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 246

Query: 133 --------AGRPTEAMQLYDSMLRNGIMPD 154
                    G    A +L  S+   G  PD
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKGCKPD 276



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A+ +   + ++ L PD  +Y+ +I   C   RLD A+ + + +      P+ + + 
Sbjct: 327 RIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYN 386

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            ++ A CK G  + A  +F+K+   G   NV +Y+ +I   +   +   A  +   M   
Sbjct: 387 TILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISK 446

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
            + P+              G   EA+ L D M ++G  P      T+  YN+
Sbjct: 447 GVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP------TVISYNI 492



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  ++ A+ L   +   G  P +I+YN ++ G C + R+D+A+ +F ++     +PN
Sbjct: 462 LCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPN 521

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+ +LI+     G   +A  + + +  +    +V++     D + +        DVY+
Sbjct: 522 ETTYILLIEGIGFAGWRTEAMELANSLFSR----DVISQ----DSFKRLNKTFPMLDVYK 573

Query: 122 EM 123
           E+
Sbjct: 574 EL 575



 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 13/99 (13%)

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CK G+ +++      ++ KG   +V+  + LI G+F  +N++ A  V  E+ E++
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESH 132

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             P++              R   A Q+ + M   G +PD
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPD 171


>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L  Q+  RG+  DI+T  T++ G   + +  EA ++FE +  + L PN
Sbjct: 55  LFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPN 114

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ L+D +CK G+M+ A ++  KM ++    NV+T+S +I+GY K   +  A DV  
Sbjct: 115 CVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLR 174

Query: 122 EMCENNISPN 131
           EM + N+ PN
Sbjct: 175 EMVQRNVMPN 184



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A ++F  +    L P+ +TY+ ++ GYC L +++ A  + +K+    + PN
Sbjct: 90  LFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPN 149

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF+ +I+ + K+G +  A  +  +M+++    N + Y+ LIDGYFK+     A D  +
Sbjct: 150 VITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCK 209

Query: 122 EMC-----ENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      E+N+  +I        GR  EA  L   M   GI PD +  ++L D
Sbjct: 210 EMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLID 263



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 70/110 (63%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD++T ++I+ G+C   +L EA  LF ++  + L PN +++  +I++  K GR+ +A
Sbjct: 5   GIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEA 64

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
             + S+M+ +G   ++VT + ++DG FK    K A +V+E + + N++PN
Sbjct: 65  FNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPN 114



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A+ +  ++  R + P+ I Y  +I GY      D A    +++   +L+ +++
Sbjct: 162 KKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNV 221

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F IL++   + GRMD+A  +   M  KG   ++V Y+ LIDGYFK  N  +A  + +EM
Sbjct: 222 IFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEM 281

Query: 124 CENNISPNIAG 134
            E NI  ++  
Sbjct: 282 KEKNIRFDVVA 292



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  A  LF ++ + GL+P+ ++Y TII       R+ EA  L  ++    +  + +
Sbjct: 22  RHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIV 81

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T ++D   K G+  +A  +F  +L+     N VTYS L+DGY K   M+ A  V ++M
Sbjct: 82  TCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKM 141

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + ++ PN+             G  ++A+ +   M++  +MP+ ++ + L D
Sbjct: 142 EKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILID 193



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 35/166 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEA--------------- 46
           L  +C  + AL +  ++   G+ P+ +TYN +I G C    +++A               
Sbjct: 320 LAPDCKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPT 379

Query: 47  --------------------VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                               +Q+ EKL    L+ +   +  LI  FC+ G    A ++  
Sbjct: 380 PITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLD 439

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           +M+++G  A++VTY+ LI GY    +++ A   Y +M  + I+PNI
Sbjct: 440 EMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNI 485



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 63/116 (54%), Gaps = 12/116 (10%)

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+ +T + ++  FC+ G++ +A ++F +M E G   N V+Y+ +I+  FKS  +  AF++
Sbjct: 8   PDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNL 67

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +M    IS +I             G+  EA ++++++L+  + P+ +  S L D
Sbjct: 68  QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLD 123



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ----LKPNS 62
           H++ ALK + Q+   G+ P+I TYNT++ G  +   ++E ++  EKL        L PN+
Sbjct: 465 HVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNA 524

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ IL+  + + G      ++  +M+ KG    + TY+ LI  Y KS  M  A ++  +
Sbjct: 525 ATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLND 584

Query: 123 MCENNISPN 131
           +      PN
Sbjct: 585 LLTKGRIPN 593



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 22/174 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L++  +L   GLE  +  YNT+I  +C L    +A  + +++    +  + +T+  L
Sbjct: 397 DKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNAL 456

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY----FKSQNMKSAFDVYEEMC 124
           I  +C    ++ A   +S+M   G   N+ TY+ L+ G        + M+    +  EM 
Sbjct: 457 IRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMN 516

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           E  + PN A            G   + + L+  M+  G +P      TL  YN+
Sbjct: 517 ERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVP------TLKTYNV 564



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 32/183 (17%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLD------------------- 44
           KE +  AAL +  ++ ++ +  D++ YN +I G   L + D                   
Sbjct: 267 KEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCKT 326

Query: 45  -EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
            +A+ +  ++    + PN++T+ ILI   CK G ++ A     +ML        +T+  L
Sbjct: 327 EDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFL 386

Query: 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           +  Y +S+       ++E++  + +  ++             G   +A  + D M++ GI
Sbjct: 387 VKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGI 446

Query: 152 MPD 154
             D
Sbjct: 447 SAD 449



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL  ++ +RGL P+  TY+ ++ GY  +    + + L  ++      P   T+ +LI  +
Sbjct: 510 KLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDY 569

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            K G+M +A  + + +L KG   N  TY  L  G+ 
Sbjct: 570 AKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGWL 605



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++  R LE   + ++ ++     + R+DEA  L   +    + P+ + +  LID + KEG
Sbjct: 210 EMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEG 269

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP 136
               A  +  +M EK  + +VV Y+ LI G  +       + V   M E  ++P+   + 
Sbjct: 270 NQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSRMIELGLAPDC--KT 326

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
            +A+ + + M   GIMP+ +  + L
Sbjct: 327 EDALDILNEMKSYGIMPNAVTYNIL 351



 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 20/144 (13%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  L   +  +G++PDI+ Y ++I GY        A+ + +++    ++ + + + 
Sbjct: 235 RMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYN 294

Query: 67  ILIDAFCKEGRMD--------------------DATMMFSKMLEKGPKANVVTYSCLIDG 106
            LI    + G+ D                    DA  + ++M   G   N VTY+ LI G
Sbjct: 295 ALIKGLLRLGKYDPRYVCSRMIELGLAPDCKTEDALDILNEMKSYGIMPNAVTYNILIGG 354

Query: 107 YFKSQNMKSAFDVYEEMCENNISP 130
             K+  ++ A    +EM      P
Sbjct: 355 LCKTGAVEKAESALDEMLVMEFVP 378


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 70/124 (56%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A +L  ++  +G  PD  TY+ +I   C   ++++A  LF+++  V + P+  T+TI
Sbjct: 438 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 497

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID+FCK G ++ A  +F +M   G    VVTY+ LI  Y K++ +  A D++  M +  
Sbjct: 498 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 557

Query: 128 ISPN 131
             PN
Sbjct: 558 CRPN 561



 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 31/189 (16%)

Query: 6   CH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           CH   ++ A  LF ++   G+ PD+ TY  +I  +C    +++A  LFE++  V   P  
Sbjct: 468 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTV 527

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+T LI A+ K  ++  A  +F +M++ G + N VTY  L+DG  K+ N+  AF+VY +
Sbjct: 528 VTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAK 587

Query: 123 M--------------CENN--ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           +              CE+   ++PN+            A +   A +L D+ML +G  P+
Sbjct: 588 LIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPN 647

Query: 155 GLLLSTLAD 163
            ++   L D
Sbjct: 648 HIVYDALID 656



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           L P+++TY  ++ G C  +++D A +L + +     +PN I +  LID FCK G++D A 
Sbjct: 609 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 668

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133
            +F +M + G   +V TY+ LID  FK   +  A  V  +M +++ +PN+          
Sbjct: 669 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 728

Query: 134 ---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              G   +A++L   M   G  P+ +  + L D
Sbjct: 729 CRIGESEKALKLLSLMEEKGCSPNVVTYTALID 761



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L   +   G EP+ I Y+ +I G+C   ++D A ++F ++T     P+
Sbjct: 623 LCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPS 682

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+T LID   K+GR+D A  + S+ML+     NVVTY+ +IDG  +    + A  +  
Sbjct: 683 VHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLS 742

Query: 122 EMCENNISPNI 132
            M E   SPN+
Sbjct: 743 LMEEKGCSPNV 753



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 28/189 (14%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ----- 57
           +K   +  A  +F ++ D G  P+ +TY  ++ G C    + +A +++ KL         
Sbjct: 538 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS 597

Query: 58  -----------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
                      L PN +T+  L+D  CK  ++D A  +   ML  G + N + Y  LIDG
Sbjct: 598 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG 657

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + K+  + SA +V+ +M +    P++             GR   AM++   ML++   P+
Sbjct: 658 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 717

Query: 155 GLLLSTLAD 163
            +  + + D
Sbjct: 718 VVTYTAMID 726



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D+A ++F Q+T  G  P + TY ++I       RLD A+++  ++      PN +
Sbjct: 660 KAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVV 719

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112
           T+T +ID  C+ G  + A  + S M EKG   NVVTY+ LIDG  +S  
Sbjct: 720 TYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQSWQ 768



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A K++G++       + +         C + + D+A QL +++      P++ T++ 
Sbjct: 403 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSK 462

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C   +++ A ++F +M   G   +V TY+ LID + K+  ++ A  ++EEM    
Sbjct: 463 VITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 522

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            SP +            A +  +A  ++  M+  G  P+ +    L D
Sbjct: 523 CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVD 570



 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++  + D A+    ++      P+++TY T++ G+    +L    ++   +      PN
Sbjct: 286 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 345

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS------ 115
              F  L+ ++C E     A  + ++M   G     V Y+  I      + + S      
Sbjct: 346 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 405

Query: 116 AFDVYEEMCENNI---SPNIA---------GRPTEAMQLYDSMLRNGIMPD 154
           A  +Y EM   N      N+A         G+  +A QL   M+R G +PD
Sbjct: 406 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPD 456



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+  LD A+K+  Q+      P+++TY  +I G C +   ++A++L   +      PN
Sbjct: 693 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 752

Query: 62  SITFTILIDAF 72
            +T+T LID  
Sbjct: 753 VVTYTALIDGL 763



 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +L++ C      + AL+  G+L D G  P  +TYN ++    S  ++D   ++ ++++  
Sbjct: 179 VLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSES 238

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
               +  T      A CKEGR  DA  M  +   +  K + V  + +I G  ++     A
Sbjct: 239 GFCMDRFTVGCFAHALCKEGRWADALDMIER---EDFKLDTVLCTHMISGLMEASYFDEA 295

Query: 117 FDVYEEMCENNISPNI 132
                 M  N+  PN+
Sbjct: 296 MSFLHRMRCNSCIPNV 311



 Score = 39.3 bits (90), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/106 (19%), Positives = 44/106 (41%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D +    +I G    +  DEA+    ++ C    PN +T+  L+  F K+ ++     + 
Sbjct: 275 DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRII 334

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           + M+ +G   N   ++ L+  Y   ++   A+ +   M      P 
Sbjct: 335 NMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 380


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A    G++   G EPDI+T+ ++I G+C  NR++EA+ +  ++  + +KP+ + +T +ID
Sbjct: 126 ASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIID 185

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK G ++ A  +F +M   G + +VV Y+ L++G   S   + A  +   M +  I P
Sbjct: 186 SLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKP 245

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++             G+  +A +LY+ M+R  I P+    ++L +
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN 290



 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H++ AL LF Q+ + G+ PD++ Y +++ G C+  R  +A  L   +T  ++KP+
Sbjct: 187 LCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPD 246

Query: 62  SITFTILIDAFCKEGR-----------------------------------MDDATMMFS 86
            ITF  LIDAF KEG+                                   +D+A  MF 
Sbjct: 247 VITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFY 306

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M  KG   +VV Y+ LI+G+ K + +  A  ++ EM +  ++ N              G
Sbjct: 307 LMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVG 366

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           +P  A +++  M+  G+ P+
Sbjct: 367 KPNVAQEVFSHMVSRGVPPN 386



 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A+ +  Q+ + G++PD++ Y TII   C    ++ A+ LF+++    ++P+ + +T
Sbjct: 157 RMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYT 216

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L++  C  GR  DA  +   M ++  K +V+T++ LID + K      A ++Y EM   
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRM 276

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +I+PNI             G   EA Q++  M   G  PD +  ++L +
Sbjct: 277 SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLIN 325



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 15/168 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE     A +L+ ++    + P+I TY ++I G+C    +DEA Q+F  +      P+
Sbjct: 257 FVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPD 316

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +T LI+ FCK  ++DDA  +F +M +KG   N +TY+ LI G+ +      A +V+ 
Sbjct: 317 VVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFS 376

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLR---NGIMPD 154
            M    + PNI             G+  +A+ +++ M +   +G+ P+
Sbjct: 377 HMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPN 424



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D  + L   L   G+  D+ T N ++  +C  ++   A     K+  +  +P+ +TFT 
Sbjct: 88  FDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTS 147

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ FC   RM++A  M ++M+E G K +VV Y+ +ID   K+ ++  A  ++++M    
Sbjct: 148 LINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYG 207

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I P++            +GR  +A  L   M +  I PD +  + L D
Sbjct: 208 IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALID 255



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 8   LDAALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           +  AL +F  +  R   G+ P+I TYN ++ G C   +L++A+ +FE +   ++    IT
Sbjct: 403 VKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIIT 462

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           +TI+I   CK G++ +A  +F  +  KG K NVVTY+ +I G F+      A  ++ +M 
Sbjct: 463 YTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMK 522

Query: 125 ENNIS 129
           E+ +S
Sbjct: 523 EDGVS 527



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             + AL LF  + +    P II +  ++     + + D  + L + L  + +  +  T  
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L++ FC+  +   A+    KM++ G + ++VT++ LI+G+     M+ A  +  +M E 
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            I P++             G    A+ L+D M   GI PD ++ ++L +
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVN 220


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K C  + A+K+   L  + ++ ++ TYNT+I       + ++A++++EK+    +KP++
Sbjct: 357 VKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSA 416

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+T LI A+ K+G+++ A  +F  M+ +G + NV+TYS LI    K+   + A +++ +
Sbjct: 417 TTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSK 476

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGL 156
           M + N  PN+             G   +A +L++ M   G  PD +
Sbjct: 477 MHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSI 522



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 68/130 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  ++ AL++F  +  RG E ++ITY+++I       R + A++LF K+     KPN +
Sbjct: 428 KKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVV 487

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF  LI A    G  + A+ +F +M  +G K + +TY  LI  Y +    + A   +E+M
Sbjct: 488 TFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQM 547

Query: 124 CENNISPNIA 133
                 P+ A
Sbjct: 548 QTQGCHPDAA 557



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 22/180 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEP--------DIITYNTIICGYCSLNRLDEAVQLFEKL 53
           L K+ +L  A+++F  L  R LEP        D+ TY T+I    S  +L  A++L  ++
Sbjct: 245 LAKQGYLKRAVEIFDWL--RNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAEM 302

Query: 54  TCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
               +  N  T++ L++   K   +D A  ++ +MLE+G   N+VTY+ LID Y K    
Sbjct: 303 RSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQW 362

Query: 114 KSAFDVYEEMCENNISP------------NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + A  V + + +  I              N +G+P +A+++Y+ ML  G+ P     + L
Sbjct: 363 EEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTAL 422



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 16/176 (9%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +I +C     L  AL+L  ++  RG++ ++ TY+ ++      N LD A  +++++    
Sbjct: 282 MISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEG 341

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             PN +T+ ILID + K  + ++A  +   + ++  +A V TY+ +I    KS   + A 
Sbjct: 342 CSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQAL 401

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            VYE+M    + P+              G+  +A++++  M+R G   + +  S+L
Sbjct: 402 KVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSL 457



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 57/102 (55%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL+LF ++     +P+++T+N++I         ++A +LFE++     KP+SIT+  L
Sbjct: 468 EMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGL 527

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
           I A+ + G+   A   F +M  +G   +   ++ L++  ++S
Sbjct: 528 ITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQS 569



 Score = 40.4 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           LI  C    H + A +LF Q+  +G +PD ITY  +I  Y    +   A++ FE++    
Sbjct: 492 LIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQG 551

Query: 58  LKPNSITFTILIDAFCKEG 76
             P++  F  L++   + G
Sbjct: 552 CHPDAAVFNSLMEVLWQSG 570


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L  A +L  ++   GL+PD ITY  +I  +C    L EA ++F  +    L P+
Sbjct: 495 LCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPS 554

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++TFT++I A+C+ G +  A   F KMLE+G + N +TY+ LI    +    + A   + 
Sbjct: 555 AVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFH 614

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGL 156
           EM E  +  N              G   +AM+ Y  M +NGI PD L
Sbjct: 615 EMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYL 661



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   ++AA   F ++   GL PD+ITYN+++ GYC    L EA+ LF  L    L P 
Sbjct: 320 LLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPT 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ I ID +C+ G +++A ++  +M E+G   NV TY+ L+ G     ++  A + ++
Sbjct: 380 VLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFD 439

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           EM    + P+            I G    A++L + ++  GI  D
Sbjct: 440 EMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSD 484



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L   L   G+  D +TYN +I G C    L +A +L  K+    L+P+ IT+T LI 
Sbjct: 469 ALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIH 528

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C+ G + +A  +F+ M+  G   + VT++ +I  Y +  N+ SA+  + +M E  + P
Sbjct: 529 AHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 588

Query: 131 N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           N              GR   A   +  ML  G++ +    + L D N
Sbjct: 589 NEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGN 635



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C L  A + F ++  +GL+PD   YNT IC    L  +  A++L E L    +  +++T+
Sbjct: 429 CSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTY 488

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            ILI   CK G + DA  +  KM+  G + + +TY+CLI  + +   ++ A  ++  M  
Sbjct: 489 NILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMIS 548

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + + P+              G    A   +  ML  G+ P+ +  + L
Sbjct: 549 DGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVL 596



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ + G+ P ++TYN +I G      ++ A   F ++  + L P+ IT+  L++ +CK G
Sbjct: 300 EMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAG 359

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP 136
            + +A ++F  +   G    V+TY+  IDGY +  +++ A  + EEM E    PN+    
Sbjct: 360 NLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYT 419

Query: 137 ------------TEAMQLYDSMLRNGIMPD 154
                         A + +D ML  G+ PD
Sbjct: 420 ILMKGSLNVCSLAMAREFFDEMLSKGLQPD 449



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 47/205 (22%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  AL LFG L   GL P ++TYN  I GYC L  L+EA  L E++      PN  
Sbjct: 357 KAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVC 416

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPK----------------------------- 94
           T+TIL+        +  A   F +ML KG +                             
Sbjct: 417 TYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVL 476

Query: 95  ------ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
                 ++ VTY+ LI G  K+ N+K A ++  +M  N + P+              G  
Sbjct: 477 MLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLL 536

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
            EA +++++M+ +G++P  +  + +
Sbjct: 537 REARKIFNNMISDGLLPSAVTFTVI 561



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +  +L +A   F ++ + G+EP+ ITYN +I   C + R   A   F ++    L  N  
Sbjct: 567 RRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKY 626

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
           T+T+LID  CK G  +DA   + +M + G   + +T+  L+ G+
Sbjct: 627 TYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGF 670



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           L  F ++   G+ PD+   N ++       R D+   + E++  + ++P+ +T+  L+D+
Sbjct: 154 LSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDS 213

Query: 72  FCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEM------ 123
           F KEGR D   M+  +M  +G     N VTY+ +I G  +  +++ A ++ E M      
Sbjct: 214 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA 273

Query: 124 CENNISPNIAGRPTEA--MQLYD---SMLRNGIMPDGLLLSTLADYNLQSSG 170
                +P I G        ++YD    M   GIMP      T+  YN    G
Sbjct: 274 SSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMP------TVVTYNAMIHG 319



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 21/183 (11%)

Query: 2   LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
            +KE   D    L  ++  RG    P+ +TYN +I G      L+EA +L E +   + K
Sbjct: 214 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-K 272

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
            +S T+  LI      G +     +  +M  +G    VVTY+ +I G  +S  +++A   
Sbjct: 273 ASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVK 332

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           + EM    + P++            AG   EA+ L+  + R G+ P      T+  YN++
Sbjct: 333 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAP------TVLTYNIR 386

Query: 168 SSG 170
             G
Sbjct: 387 IDG 389


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+     A  L   +  RG+E +++TYNTII GYC    L EA++L  K+     KP+
Sbjct: 501 LLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPD 560

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT  I+IDA+CK+G+++ A  +  ++       +++ Y+ LI G      ++ A     
Sbjct: 561 AITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLR 620

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNG 150
            M    ISPN+A        L+ +M  +G
Sbjct: 621 RMLSEGISPNVATWNVLVRHLFSNMGHSG 649



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  + ++   G+ P+++ YN ++ G CS   L +AV +F ++      PN  T++ LID
Sbjct: 335 ALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALID 394

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G +D A+ +++ M+  G   NVV Y+C++D   ++     A+ + E M   N  P
Sbjct: 395 GYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPP 454

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N             +GR   A++++D M  +G  P+    + L D
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLD 499



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A +++  +   G  P+++ Y  ++   C  +  ++A  L E +      PN++
Sbjct: 398 KAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTV 457

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF   I   C  GR+D A  +F +M   G   N  TY+ L+D   K +    AF + ++M
Sbjct: 458 TFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDM 517

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
               I  N+            AG   EA++L   M+  G  PD + ++ + D
Sbjct: 518 EHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVID 569



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL+L G++  RG +PD IT N +I  YC   +++ A+QL ++L+  +  P+ I +T 
Sbjct: 542 LGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTS 601

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           LI   C    +++A +   +ML +G   NV T++ L+   F +     A
Sbjct: 602 LISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGA 650



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 92/186 (49%), Gaps = 13/186 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE   + A +L  ++ ++G++P++I+Y TII        ++ ++ +  K+      PN  
Sbjct: 258 KEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLH 317

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TFT LI  F  +G   +A   + +M+ +G   NVV Y+ L+ G    +++  A  V+ +M
Sbjct: 318 TFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQM 377

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS-G 170
             N   PN+            AG    A ++++ M+ +G  P+ +  + + D   ++S  
Sbjct: 378 EINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMF 437

Query: 171 SQEHCI 176
           +Q +C+
Sbjct: 438 NQAYCL 443



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 42/183 (22%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           ++  +   G+EP++ TYN ++   C  NR+D A +L  +++     P+ +++T LI + C
Sbjct: 168 IYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLC 227

Query: 74  KEGRM------------------------------DDATMMFSKMLEKGPKANVVTYSCL 103
           K G++                              ++A  +  +M+ KG   NV++Y+ +
Sbjct: 228 KLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTI 287

Query: 104 IDGYFKSQNMKSAFDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGI 151
           I+    + N++ +  V  +M     SPN            + G   EA+  +D M+R G+
Sbjct: 288 INALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGV 347

Query: 152 MPD 154
           +P+
Sbjct: 348 VPN 350



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P +  YN +I G C     +EA QL +++    + PN I++T +I+A    G ++ +  +
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
            +KM  +G   N+ T++ LI G+F       A D ++ M    + PN+            
Sbjct: 304 LAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCS 363

Query: 138 -----EAMQLYDSMLRNGIMPDGLLLSTLAD 163
                +A+ +++ M  NG  P+    S L D
Sbjct: 364 KRSLGDAVSVFNQMEINGCCPNVRTYSALID 394



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ +T+NT I G C   R+D A+++F+++      PN+ T+  L+D+  K+ R  +A  +
Sbjct: 454 PNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGL 513

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP-----NIA------ 133
              M  +G + N+VTY+ +I GY  +  +  A ++  +M      P     NI       
Sbjct: 514 VKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCK 573

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            G+   A+QL D +      PD +  ++L
Sbjct: 574 QGKVNIAIQLMDRLSAGKWHPDIIAYTSL 602



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALK F ++ D  ++P +  YN I+      NR      ++  +    ++PN  T+ IL
Sbjct: 128 EQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNIL 187

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE--- 125
           + A CK  R+D A  +  +M  KG   + V+Y+ LI    K   +K A ++         
Sbjct: 188 LKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVP 247

Query: 126 --NNISPNIAGRPT--EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
             N +   +    T  EA QL D M+  GI P+ +  +T+ +  L  +G+ E
Sbjct: 248 VYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIIN-ALSDAGNVE 298



 Score = 43.5 bits (101), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 56/130 (43%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L  E  +D    L  Q+   G+      + ++I  Y      ++A++ F ++   ++KP 
Sbjct: 86  LASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPT 145

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  ++DA   E R      ++S M + G + NV TY+ L+    K+  +  A  +  
Sbjct: 146 VKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLV 205

Query: 122 EMCENNISPN 131
           EM      P+
Sbjct: 206 EMSSKGCDPD 215


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+   LD A KLF     +G++P ++ YN +I GYC    +++A+   +++      P+
Sbjct: 495 FIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPD 554

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ +ID + K+  + +A  +F +M+++  K NVVTY+ LI+G+ ++ +   A   +E
Sbjct: 555 EFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFE 614

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM  + + PN+             G+ ++A   ++ ML N  +P+ +  + L +
Sbjct: 615 EMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLIN 668



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 30/188 (15%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+  L  ALKLFGQ+  +  +P+++TY ++I G+C       A + FE++    LKPN 
Sbjct: 566 VKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNV 625

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA------ 116
           +T+TILI  FCKEG++  A   F  ML      N VT++ LI+G   + N+ +A      
Sbjct: 626 VTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGL--TNNLATAVSNKAN 683

Query: 117 ----------FDVYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
                      D +  M  +     +A   +             A+QL D M   GI PD
Sbjct: 684 ESLEIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPD 743

Query: 155 GLLLSTLA 162
            +  + L 
Sbjct: 744 PVSFAALV 751



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K    +T+ G EPDI TYNT+I G C   ++ EA +L E      L PN +++T LI  +
Sbjct: 331 KTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVY 390

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           CK+G+   A  +F  M EKG   ++V Y  L+ G   +  +  A  V ++M E  + P+ 
Sbjct: 391 CKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDA 450

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                        GR + A  L   ML   +  D  + +TL D
Sbjct: 451 NVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVD 493



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L AA  L  ++  + L  D     T++ G+    +LDEA +LFE      + P 
Sbjct: 460 LCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPG 519

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  +I  +CK G M+DA     +M +     +  TYS +IDGY K  ++ +A  ++ 
Sbjct: 520 VVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFG 579

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M +    PN+             G  + A + ++ M  +G+ P+
Sbjct: 580 QMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPN 624



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    +D AL +  ++ +RG+ PD   YN ++ G C   RL  A  L  ++    L  +
Sbjct: 425 LVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLD 484

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +     L+D F + G++D+A  +F   + KG    VV Y+ +I GY K   M  A    +
Sbjct: 485 AFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQ 544

Query: 122 EMCENNISPN-------IAGRPTE-----AMQLYDSMLRNGIMPDGLLLSTLAD 163
            M + + SP+       I G   +     A++L+  M++    P+ +  ++L +
Sbjct: 545 RMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLIN 598



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  ++   KL      +G  P+I+ YNT++ GY     ++ A  LF++L      P 
Sbjct: 215 LCKERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPT 274

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+ I+I+  CK+        +  +M E+G   NV  Y+ ++D   K            
Sbjct: 275 TETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLR 334

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + EN   P+I             G+  EA +L +  ++ G+ P+ L  + L
Sbjct: 335 WITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPL 386



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF  +T++G   D++ Y  ++ G  +   +D A+ + +K+    + P++  + +L++
Sbjct: 399 AFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMN 458

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK+GR+  A ++  +ML +    +    + L+DG+ +   +  A  ++E      + P
Sbjct: 459 GLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDP 518

Query: 131 NIAGRPTEAMQLYDSMLRN----GIMPDGL 156
            + G        Y++M++     G+M D L
Sbjct: 519 GVVG--------YNAMIKGYCKFGMMNDAL 540



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 8/149 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +  A +L      RGL P+ ++Y  +I  YC   +   A  LF  +T      + +
Sbjct: 357 RDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLV 416

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKG--PKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +  L+      G +D A  +  KM+E+G  P ANV  Y+ L++G  K   + +A  +  
Sbjct: 417 AYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANV--YNVLMNGLCKKGRLSAAKLLLV 474

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNG 150
           EM   N+S +     T    L D  +R+G
Sbjct: 475 EMLHQNLSLDAFVSAT----LVDGFIRHG 499



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 55/99 (55%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           PD+I  N ++       +++ A +++E++       ++ +  I++   CKE ++++   +
Sbjct: 168 PDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEGRKL 227

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +    KG   N+V Y+ L+DGY+K  +++ A  +++E+
Sbjct: 228 INDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKEL 266



 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 49/114 (42%)

Query: 12  LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
           +  F  +   G E  +  YN+++   C    ++ A+QL +K+T   + P+ ++F  L+  
Sbjct: 694 MDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYG 753

Query: 72  FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            C EGR  +     S  L +      V YS  ++ +        A  V+  + E
Sbjct: 754 LCLEGRSKEWKNTISCKLNEWELQIAVKYSQKLNPFLPKGLTSEASKVFHTLLE 807



 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 1   MLIKECH---LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE-KLTCV 56
           +LI  CH   ++AAL+L  ++T +G+ PD +++  ++ G C   R  E       KL   
Sbjct: 715 VLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGLCLEGRSKEWKNTISCKLNEW 774

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
           +L+  ++ ++  ++ F  +G   +A+ +F  +LE
Sbjct: 775 ELQI-AVKYSQKLNPFLPKGLTSEASKVFHTLLE 807


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 68/110 (61%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G EP+I+ YN +I GYC+   ++ A+++FE +   +  PN  T+T LI   CK G+++ A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            ++FS+M+E G + NVVTY+ LI G     +++ AF +   M  N + PN
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPN 316



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 12/183 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A+ LF ++ + GLEP+++TY  +I G C+   L  A +L   +    L PN
Sbjct: 257 LCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPN 316

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF++LIDA CK  ++++A +    +++KG K N V Y+ LIDG  K+  + +A ++ +
Sbjct: 317 DWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQ 376

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M      P+       I G     + ++A  + + M+  GI    +  + + D  ++  
Sbjct: 377 KMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREV 436

Query: 170 GSQ 172
           GS+
Sbjct: 437 GSE 439



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A    G L  +G++ + + Y ++I G C   ++D A +L +K+      P+
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPD 386

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + +++ LID  C++ ++  AT+M   M+EKG +A+ VTY+ +ID   +    +    +++
Sbjct: 387 AHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFD 446

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    I+P+I             GR  +A  +   M+  G+ P+ +  +TL
Sbjct: 447 KMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTL 498



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 35/165 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV-------------- 47
           L K   +DAA +L  ++   G  PD  +Y+++I G C   +L +A               
Sbjct: 362 LCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 48  ---------------------QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                                ++F+K+    + P+ +T+T+ + ++C+EGRM+DA  M  
Sbjct: 422 PVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIV 481

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           +M+++G   N+VTY+ LI GY     +  AF  +E M      PN
Sbjct: 482 QMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPN 526



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++F  +  RG      TY  ++ G      + EA+ +F  +      P++  +  
Sbjct: 123 LTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYAT 182

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C+ GR ++A ++  + +  G + N+V Y+ LIDGY  +  M+ A  V+E M  N 
Sbjct: 183 MVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNR 242

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            SPN+            +G+   AM L+  M+  G+ P+ +  + L
Sbjct: 243 CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTAL 288



 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ +F  +      PD   Y T++ G C   R +EA  L E+      +PN + +  LID
Sbjct: 161 AMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID 220

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C  G M+ A  +F  M       NV TY+ LI G  KS  ++ A  ++  M E  + P
Sbjct: 221 GYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP 280

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G    A +L   M  NG++P+    S L D
Sbjct: 281 NVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLID 325



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++E   +   K+F ++   G+ PDI+TY   +  YC   R+++A  +  ++    + PN
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI  +   G +  A   F  M+ KG K N  +Y+ L+    K  +  ++ D+++
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 13/171 (7%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L  R    ++ TY T+I  YC    +  A Q    L    L P+S  +T  +  +C+ G 
Sbjct: 63  LASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGM 122

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           +  A  +F  M  +G      TY+ L+ G   +  ++ A  V+  M  ++ +P+      
Sbjct: 123 LTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYAT 182

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
                  AGR  EA  L +  + NG  P+ ++ + L D    ++G  EH +
Sbjct: 183 MVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALID-GYCNAGEMEHAL 232


>gi|410109907|gb|AFV61033.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           trifolia]
          Length = 250

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 72/117 (61%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  +F  +T  GL P +++YNT++ GY  L  LDE  +L   +    ++P+  
Sbjct: 134 KDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVY 193

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           T+++LI+ FCKE +MDDA  +F +ML KG   N VT++ LIDG+ K+  +  A ++Y
Sbjct: 194 TYSVLINGFCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 250



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 23/162 (14%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  +       + ++ + G    +  +N ++  +C    +  A  +F+ +T   L+P+
Sbjct: 97  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPS 156

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  L++ + + G +D+   + S ML  G + +V TYS LI+G+ K   M        
Sbjct: 157 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGFCKESKMD------- 209

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                           +A +L+D ML  G++P+G+  +TL D
Sbjct: 210 ----------------DANELFDEMLVKGLVPNGVTFTTLID 235


>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
 gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
 gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
 gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +ALKL   +   GL+P+++T+NT+I G+C   +L EA ++F ++  V + PN++T+  
Sbjct: 289 LSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNT 348

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ + ++G  + A   +  M+  G + +++TY+ LI G  K    + A    +E+ + N
Sbjct: 349 LINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKEN 408

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           + PN            +        +LY SM+R+G  P+
Sbjct: 409 LVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPN 447



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+ +  +D AL+ + ++    + P+  T N ++ GYC   +LD+ ++L + +  +  +  
Sbjct: 213 LLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRAT 272

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +++  LI   C++G +  A  + + M + G + NVVT++ LI G+ ++  ++ A  V+ 
Sbjct: 273 DVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   N++PN              G    A + Y+ M+ NGI  D L  + L
Sbjct: 333 EMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNAL 384



 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD  ++L   +   G     ++YNT+I G+C    L  A++L   +    L+PN +TF  
Sbjct: 254 LDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNT 313

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  FC+  ++ +A+ +F +M       N VTY+ LI+GY +  + + AF  YE+M  N 
Sbjct: 314 LIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNG 373

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I  +I              +  +A Q    + +  ++P+    S L
Sbjct: 374 IQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSAL 419



 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A + +  +   G++ DI+TYN +I G C   +  +A Q  ++L    L PNS TF+ L
Sbjct: 360 EMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSAL 419

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   C     D    ++  M+  G   N  T++ L+  + ++++   A  V  EM   +I
Sbjct: 420 IMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSI 479



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A   F Q+ D G  P + + N  +       R+D A++ + ++   ++ PN  T  +++ 
Sbjct: 187 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMS 246

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+ G++D    +   M   G +A  V+Y+ LI G+ +   + SA  +   M ++ + P
Sbjct: 247 GYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQP 306

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+            A +  EA +++  M    + P+ +  +TL
Sbjct: 307 NVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTL 349



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A +   +L    L P+  T++ +I G C     D   +L++ +      PN
Sbjct: 388 LCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPN 447

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEK 91
             TF +L+ AFC+    D A+ +  +M+ +
Sbjct: 448 EQTFNMLVSAFCRNEDFDGASQVLREMVRR 477


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K    D+A++ + ++++ G  P+++T+ ++I G+C  NR+D A+++  ++  ++LK +
Sbjct: 600 FVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLD 659

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LID FCK+  M  A  +FS++ E G   NV  Y+ LI G+     M +A D+Y+
Sbjct: 660 LPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYK 719

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M  + IS ++             G    A  LY  +L  GI+PD +L   L +
Sbjct: 720 KMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVN 773



 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 96/182 (52%), Gaps = 18/182 (9%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +  A  LF +L + GL P++  YN++I G+ +L ++D A+ L++K+    +  +  
Sbjct: 672 KKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLF 731

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +ID   K+G ++ A+ ++S++L+ G   + + +  L++G  K      A  + EEM
Sbjct: 732 TYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEM 791

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            + +++PN+             G   EA +L+D ML  GI+ D  +      +NL  SG 
Sbjct: 792 KKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTV------FNLLVSGR 845

Query: 172 QE 173
            E
Sbjct: 846 VE 847



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 12/147 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           +YN+II G+  +   D AV+ + +++     PN +TFT LI+ FCK  RMD A  M  +M
Sbjct: 592 SYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEM 651

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
                K ++  Y  LIDG+ K  +MK+A+ ++ E+ E  + PN++            G+ 
Sbjct: 652 KSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKM 711

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             A+ LY  M+ +GI  D    +T+ D
Sbjct: 712 DAAIDLYKKMVNDGISCDLFTYTTMID 738



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 36/166 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +DAA      +  +G+EP+++ YN ++  +C +  +D A  +F ++    L+PN+ 
Sbjct: 461 KQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNF 520

Query: 64  TFTILIDAF-----------------------------------CKEGRMDDATMMFSKM 88
           T++ILID F                                   CK G+   A  M   +
Sbjct: 521 TYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNL 580

Query: 89  L-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           + EK    +  +Y+ +IDG+ K  +  SA + Y EM EN  SPN+ 
Sbjct: 581 IKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVV 626



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 1/123 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           +AAL++F    +  +    +  N I   +C   ++D A    + +    ++PN + +  +
Sbjct: 432 EAALEIFNDSFESWIAHGFMC-NKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNM 490

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           + A C+   MD A  +FS+MLEKG + N  TYS LIDG+FK+++ ++A+DV  +M  +N 
Sbjct: 491 MLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNF 550

Query: 129 SPN 131
             N
Sbjct: 551 EAN 553



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 70/128 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +KE +++ A+++  ++   G+   +I   +++ GYC  N L +A+ LF ++    L P+
Sbjct: 320 FVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPD 379

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F+++++ FCK   M+ A   + +M       + V    +I G  K+++ ++A +++ 
Sbjct: 380 KVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFN 439

Query: 122 EMCENNIS 129
           +  E+ I+
Sbjct: 440 DSFESWIA 447



 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/210 (19%), Positives = 89/210 (42%), Gaps = 48/210 (22%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           I+   +D A+  FG + DR + P +   N ++      N +DEA +++ K+  + +  ++
Sbjct: 180 IRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDN 239

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPK---------------------------- 94
           +T  +L+ A  +E + ++A  +F +++ +G +                            
Sbjct: 240 VTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLRE 299

Query: 95  --------ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT--------- 137
                   A+  TY+ +I  + K  NM+ A  V +EM    I  ++    +         
Sbjct: 300 MRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGN 359

Query: 138 ---EAMQLYDSMLRNGIMPDGLLLSTLADY 164
              +A+ L++ M   G+ PD ++ S + ++
Sbjct: 360 ELGKALDLFNRMEEEGLAPDKVMFSVMVEW 389



 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 36/165 (21%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDII---------------------------------- 28
           ++E   + A+K+F ++  RG EPD +                                  
Sbjct: 250 LRERKPEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPAS 309

Query: 29  --TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
             TY ++I  +     ++EAV++ +++    +  + I  T L++ +CK   +  A  +F+
Sbjct: 310 QETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFN 369

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           +M E+G   + V +S +++ + K+  M+ A + Y  M    I+P+
Sbjct: 370 RMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPS 414



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 58/105 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+ +++ A  L+ +L D G+ PD I +  ++ G     +  +A ++ E++    + PN
Sbjct: 740 LLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPN 799

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            + ++ +I    +EG +++A  +  +MLEKG   +   ++ L+ G
Sbjct: 800 VLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVSG 844


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 12/162 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  ++   +L  ++T RG++PDI TYN ++ G C++ +LD+A++L+++     L  N  T
Sbjct: 513 EGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHT 572

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           + I+++ +CK  R++D   +F+++L K  + N + Y+ +I  + ++ N+ +A  + E M 
Sbjct: 573 YGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMK 632

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
              I PN A            G   +A  L D M + G +P+
Sbjct: 633 SKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPN 674



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 72/129 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A++LF ++   G+ P+++TYN II G C   RLD A +L EK+T   ++PN
Sbjct: 230 LCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPN 289

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI+   K    D    +  +M+  G   NVV ++ LIDGY K  N++ A  + +
Sbjct: 290 LKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKD 349

Query: 122 EMCENNISP 130
            M   NI+P
Sbjct: 350 VMISKNITP 358



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 68/116 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L  ++   G  P+++ Y  +I GYC L ++D A   + ++    + PN  T+T+
Sbjct: 656 VEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTV 715

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +ID +CK G M+ A  +  KM E G   +VVTY+ L +G+ K+ +M +AF V ++M
Sbjct: 716 MIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQM 771



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++  ++ +RGL  D ITYN +I G+C+  +++   +L E++T   ++P+  T+  
Sbjct: 481 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 540

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           L+   C  G++DDA  ++ +    G  +N+ TY  +++GY K+  ++   +++ E+    
Sbjct: 541 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 600

Query: 126 ---NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              N+I  NI        G    A+QL ++M   GI+P+    S+L
Sbjct: 601 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSL 646



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL+L   +  +G+ P+  TY+++I G C++  +++A  L +++      PN + +T LI
Sbjct: 623 AALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALI 682

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             +CK G+MD A   + +M+      N  TY+ +IDGY K  NM+ A ++  +M E+ I 
Sbjct: 683 GGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 742

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           P++            A     A ++ D M   G+  D +  +TL 
Sbjct: 743 PDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 787



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF +L  + +E + I YN II  +C    +  A+QL E +    + PN  T++ LI   C
Sbjct: 592 LFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVC 651

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
             G ++DA  +  +M ++G   NVV Y+ LI GY K   M +A   + EM   NI PN  
Sbjct: 652 NIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKF 711

Query: 132 ----------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
                       G   +A  L   M  +GI+PD      +  YN+ ++G
Sbjct: 712 TYTVMIDGYCKLGNMEKANNLLIKMKESGIVPD------VVTYNVLTNG 754



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    +   ++F ++   G  PD+ ++  +I   C   +++ A++LF K+  + + PN
Sbjct: 196 LVKANEFEKCCEVF-RVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPN 254

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I+  C+ GR+D+A  +  KM  KG + N+ TY  LI+G  K         + +
Sbjct: 255 VVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILD 314

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM     +PN+             G    A+++ D M+   I P  + L +L
Sbjct: 315 EMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSL 366



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   LD A +L  ++T +G++P++ TY  +I G   LN  D+   + +++      PN
Sbjct: 265 LCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPN 324

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  LID +CK G ++ A  +   M+ K      VT   L+ G+ KS  ++ A +  E
Sbjct: 325 VVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALE 384

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           E+  + +S +               R   A +    ML     P  LLL+ L 
Sbjct: 385 EILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLV 437



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K+    +A +    +  R   P  +    ++CG C   +  EA +L+ +L       
Sbjct: 404 WLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPA 463

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T   LI   C  G++ +A+ +  +MLE+G   + +TY+ LI G+     ++  F + 
Sbjct: 464 SKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLR 523

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           EEM +  I P+I             G+  +A++L+D    +G      L+S +  Y +  
Sbjct: 524 EEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASG------LISNIHTYGIMM 577

Query: 169 SG 170
            G
Sbjct: 578 EG 579



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A   + ++    + P+  TY  +I GYC L  +++A  L  K+    + P+ +T+ 
Sbjct: 690 QMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYN 749

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
           +L + FCK   MD+A  +  +M  +G   + +TY+ L+ G+
Sbjct: 750 VLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 790



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK    D    +  ++   G  P+++ +N +I GYC +  ++ A+++ + +    + P 
Sbjct: 300 LIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPT 359

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T   L+  FCK  +++ A     ++L  G   +      ++    K     SAF   +
Sbjct: 360 SVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTK 419

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNG 150
            M   N  P+              G+  EA +L+  +L  G
Sbjct: 420 MMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 460



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 32  TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
           +++   C   R   A +  + +     +P+ +  T+L+   CK+G+  +AT ++ ++LEK
Sbjct: 400 SVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEK 459

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGRPTEA 139
           G  A+ VT + LI G   +  +  A  + +EM E     + I+ N         G+    
Sbjct: 460 GSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGC 519

Query: 140 MQLYDSMLRNGIMPD 154
            +L + M + GI PD
Sbjct: 520 FRLREEMTKRGIQPD 534


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +      A+ L  ++    L PD+++YNT+I G+C    L++A+QL  ++       +
Sbjct: 152 LCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWS 211

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ ILIDAFCK G+MD+A  +  +M  KG +A+++ Y+ LI G+     +     +++
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFD 271

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           E+ E   SP               GR  EA ++++ M+  G+ P+    + L D
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLID 325



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D A+ L  ++  +GLE D+I Y ++I G+C    LD    LF+++      P +I
Sbjct: 224 KAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAI 283

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI  FCK GR+ +A+ +F  M+E+G + NV TY+ LIDG       K A  +   M
Sbjct: 284 TYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLM 343

Query: 124 CENNISPNIA 133
            + +  PN+ 
Sbjct: 344 LQKDEEPNVV 353



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 71/125 (56%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD    LF ++ +RG  P  ITYNT+I G+C L RL EA ++FE +    ++PN  T+T
Sbjct: 262 ELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYT 321

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID  C  G+  +A  + + ML+K  + NVVTY+ +I+   K   +  A ++ E M + 
Sbjct: 322 GLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKR 381

Query: 127 NISPN 131
              P+
Sbjct: 382 RTRPD 386



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 89/174 (51%), Gaps = 12/174 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   ++ A++L+ Q+++  + P+  TY T+I G+C    L+ A  L  K+   +L P+ 
Sbjct: 470 LKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSV 529

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  L+ + CK+G +D A  +F +M       +V++++ +IDG  K+ ++KSA  +   
Sbjct: 530 FDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVG 589

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           M    +SP++             G   EA+  +D M+ +G  PD  +  ++  Y
Sbjct: 590 MSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKY 643



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L   +  +  EP+++TYN II   C  + + +A+++ E +   + +P++IT+  L+ 
Sbjct: 336 ALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLG 395

Query: 71  AFCKEGRMDDATMMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE--- 125
             C +G +D+A+ +   ML+       +V++++ LI G  K   +  A D+Y+ + E   
Sbjct: 396 GLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLG 455

Query: 126 --NNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + ++ NI       +G   +AM+L+  +  + I+P+    +T+ D
Sbjct: 456 AGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMID 502



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  AL ++  L ++    DI+T N ++        +++A++L+++++  ++ PN
Sbjct: 434 LCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPN 493

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T+T +ID FCK G ++ A  +  KM       +V  Y+CL+    K   +  A+ ++E
Sbjct: 494 SDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFE 553

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           EM  ++  P++            AG    A  L   M   G+ PD    S L +  L+
Sbjct: 554 EMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLK 611



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 10/136 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-- 59
           L K+  +  AL++   +  R   PD ITYN+++ G C+   LDEA     KL  + LK  
Sbjct: 362 LCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEA----SKLLYLMLKDS 417

Query: 60  ----PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
               P+ I+F  LI   CK  R+  A  ++  ++EK    ++VT + L++   KS ++  
Sbjct: 418 SYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNK 477

Query: 116 AFDVYEEMCENNISPN 131
           A ++++++  + I PN
Sbjct: 478 AMELWKQISNSKIVPN 493



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 12/153 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           RG   ++  YN ++ G C      +AV L  ++    L P+ +++  +I  FC+   ++ 
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A  + ++M   G   ++VT+  LID + K+  M  A  + +EM    +  ++        
Sbjct: 196 ALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIR 255

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                G       L+D +L  G  P  +  +TL
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTL 288



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD A +LF ++      PD+I++N +I G      +  A  L   ++   L P+
Sbjct: 539 LCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPD 598

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG--PKANV 97
             T++ LI+ F K G +D+A   F KM++ G  P A++
Sbjct: 599 LFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHI 636


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +  A+KL  ++ DRG  PD++TYN ++ G C   RLDEA++    +     +PN I
Sbjct: 251 RDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVI 310

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  I++ + C  GR  DA  + + ML KG   +VVT++ LI+   +   +  A D+ E+M
Sbjct: 311 THNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM 370

Query: 124 CENNISPN-IAGRP-----------TEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++   PN ++  P             A++  + M+  G  PD +  +T+
Sbjct: 371 PQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A+ +  ++   G +P+ ++YN ++ G+C   ++D A++  E++      P+
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++ A CK+G+++DA  + +++  KG    ++TY+ +IDG  K+     A  + +
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLD 473

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   ++ P+              G+  EA++ +    R GI P+ +  +++
Sbjct: 474 EMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A+++  QL+ +G  P +ITYNT+I G     +  +A++L +++    LKP+
Sbjct: 424 LCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPD 483

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT++ L+    +EG++D+A   F +    G + N VT++ ++ G  KS+    A D   
Sbjct: 484 TITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLV 543

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIM 152
            M      PN              G   EA++L + +   G+M
Sbjct: 544 FMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL +  +++   + PD++TYNTI+   C   +L +A+++ +++      P+ I
Sbjct: 184 KAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI+A C++  +  A  +  +M ++G   +VVTY+ L++G  K   +  A     +M
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
             +   PN+             GR  +A +L   MLR G  P  +  + L ++
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A+K    +   G +P++IT+N I+   CS  R  +A +L   +      P+ +
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF ILI+  C++G +  A  +  KM + G + N ++Y+ L+ G+ K + M  A +  E M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 P+I             G+  +A+++ + +   G  P  +  +T+ D
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 15/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +++   L+   K    +   G  PDII   T+I G+C L +  +A ++ E L      P+
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ ++I  +CK G +++A  +  +M       +VVTY+ ++     S  +K A +V +
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M + +  P++                  AM+L D M   G  PD +  + L +
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 282



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+++  ++  R   PD+ITY  +I   C  + +  A++L +++      P+ +T+ +
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CKEGR+D+A    + M   G + NV+T++ ++     +     A  +  +M    
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
            SP++             G    A+ + + M ++G  P+ L
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 15/140 (10%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           L+E  +  E +      P+ I  T LI  FC+ G+   A  +   +   G   +V+TY+ 
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNV 177

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           +I GY K+  + +A  V + M   ++SP++            +G+  +AM++ D ML+  
Sbjct: 178 MISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 151 IMPDGLLLSTLADYNLQSSG 170
             PD +  + L +   + SG
Sbjct: 235 CYPDVITYTILIEATCRDSG 254


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 22/186 (11%)

Query: 1   MLIKECHLDA----ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +L+    +DA    A  +  ++   G  PD+ TYN +I GYC      +A+++FE+++  
Sbjct: 259 LLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQK 318

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            ++  ++T+T LI  F ++G++ +   +F+  ++KG + +VV Y+ LI+ +    +M+ A
Sbjct: 319 GVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERA 378

Query: 117 FDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +++  EM +  I P+            + GR  EA  L D M + GI PD      L  Y
Sbjct: 379 YEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPD------LVSY 432

Query: 165 NLQSSG 170
           N   SG
Sbjct: 433 NTLISG 438



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 18/158 (11%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILI 69
           AL+L  Q+      P+ +TYNT+I G+C+  R+  A+++  ++     + P+  T+  LI
Sbjct: 135 ALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLI 190

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
             +CK GRM+DA  +F +ML KG  A + V Y+ LI GY     +  A    E+M +  I
Sbjct: 191 SGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGI 250

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +  +A             R ++A  + + M +NG  PD
Sbjct: 251 AMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPD 288



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 7   HLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            ++ A+K+F ++  +G + P  + YN +I GYC + +LD A+Q  E +    +     T+
Sbjct: 198 RMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATY 257

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            +L+ A   + R  DA  +  +M + G   +V TY+ LI+GY K  N K A +V+EEM +
Sbjct: 258 NLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQ 317

Query: 126 NNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +                 G+  E  +L++  ++ GI PD ++ + L
Sbjct: 318 KGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNAL 365



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 12/154 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF     +G+ PD++ YN +I  +C+   ++ A ++  ++   ++ P+ +T+  L+  F
Sbjct: 345 RLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGF 404

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN- 131
           C  GR+D+A  +  +M ++G + ++V+Y+ LI GY    ++K A  V +EM +   +P  
Sbjct: 405 CLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTL 464

Query: 132 ------IAG-----RPTEAMQLYDSMLRNGIMPD 154
                 I G     +  +A  L   M+  GI PD
Sbjct: 465 MTYNALIQGLCKIRQGDDAENLMKEMVAKGITPD 498



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 74/124 (59%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A ++  ++  + + PD +TYNT++ G+C L RLDEA  L +++T   ++P+ +++  
Sbjct: 375 MERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNT 434

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +  +G + DA  +  +M++KG    ++TY+ LI G  K +    A ++ +EM    
Sbjct: 435 LISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKG 494

Query: 128 ISPN 131
           I+P+
Sbjct: 495 ITPD 498



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A  L  ++T RG++PD+++YNT+I GY     + +A+++ +++      P  +T+ 
Sbjct: 409 RLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYN 468

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            LI   CK  + DDA  +  +M+ KG   +  TY  LI+G
Sbjct: 469 ALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEG 508


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D+AL+LF  +     +P+ ITY T++ G C+  RLD A +L  ++      PN +TF 
Sbjct: 471 RVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFN 527

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L+  FC++G MD+A  +  +M+E G   N++TY+ L+DG  K  N + A ++   +  N
Sbjct: 528 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSN 587

Query: 127 NISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLL 157
            +SP+I              R  EA++++  +   G+ P  ++
Sbjct: 588 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVI 630



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 44/216 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+  +D A +    +   G  PD I+Y T++ G C   R ++A +L +++      PN
Sbjct: 361 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 420

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY- 120
            +TF   I   C++G ++ ATM+  +M E G + N+VTY+ L++G+     + SA +++ 
Sbjct: 421 EVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFY 480

Query: 121 -------------------------------EEMCENNISPNIA------------GRPT 137
                                           EM + + +PN+             G   
Sbjct: 481 SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 540

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           EA++L + M+ +G  P+ +  +TL D   +   S+E
Sbjct: 541 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEE 576



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K      A+++  ++  +G  P+I+TYN II G C   R+D+A +   +L+    +P+++
Sbjct: 223 KSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTV 282

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++T ++   C   R +D   +F++M+EK    N VT+  L+  + +   ++ A  V E+M
Sbjct: 283 SYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 342

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +  + N              GR  +A Q  ++M   G  PD +  +T+
Sbjct: 343 SGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 392



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 69/127 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+C+ + AL+L   L   G+ PDI+TY++II      +R++EA+++F  +  + ++P 
Sbjct: 568 ITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK 627

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  ++ A CK    D A   F+ M+  G   N +TY  LI+G      +K   D+  
Sbjct: 628 AVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLR 687

Query: 122 EMCENNI 128
           E+C   +
Sbjct: 688 ELCSRGV 694



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 66/121 (54%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L   +  RG +P ++TY  ++   C      +A+++ +++      PN +T+ ++I+
Sbjct: 195 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIIN 254

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+EGR+DDA    +++   G + + V+Y+ ++ G   ++  +   +++ EM E N  P
Sbjct: 255 GMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMP 314

Query: 131 N 131
           N
Sbjct: 315 N 315



 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + +E  +D A +   +L+  G +PD ++Y T++ G C+  R ++  +LF ++      PN
Sbjct: 256 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPN 315

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +L+  FC+ G ++ A  +  +M   G  AN    + +I+   K   +  AF    
Sbjct: 316 EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLN 375

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP+             A R  +A +L   M+R    P+ +  +T 
Sbjct: 376 NMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 427



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 15/170 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LDAA +L   +    + PD  TY  II G C   R+ EA+ L + +     +P+ +T+T
Sbjct: 159 QLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYT 215

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L++A CK      A  +  +M  KG   N+VTY+ +I+G  +   +  A +    +   
Sbjct: 216 VLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSY 275

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
              P+             A R  +  +L+  M+    MP+ +    L  +
Sbjct: 276 GFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRF 325



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 64/124 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L  Q+ + G  P++ITYNT++ G       +EA++L   L    + P+ +T++ 
Sbjct: 539 MDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSS 598

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I    +E R+++A  MF  + + G +   V Y+ ++    K  N   A D +  M  N 
Sbjct: 599 IIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNG 658

Query: 128 ISPN 131
             PN
Sbjct: 659 CMPN 662



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+++  Q++  G   +    N +I   C   R+D+A Q    +      P++I++T 
Sbjct: 332 VERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTT 391

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C+  R +DA  +  +M+ K    N VT++  I    +   ++ A  + E+M E+ 
Sbjct: 392 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 451

Query: 128 ISPNIA------------GRPTEAMQLYDSM 146
              NI             GR   A++L+ SM
Sbjct: 452 CEVNIVTYNALVNGFCVQGRVDSALELFYSM 482



 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 44/195 (22%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  + T RG  PD+     +I   C   R  +A ++           +   +  L+ 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 71  AFCKEGRMDDATMMFSK--------------------------------MLEKGPKANVV 98
            +C+ G++D A  + +                                 ML +G + +VV
Sbjct: 153 GYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVV 212

Query: 99  TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSM 146
           TY+ L++   KS     A +V +EM     +PNI             GR  +A +  + +
Sbjct: 213 TYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRL 272

Query: 147 LRNGIMPDGLLLSTL 161
              G  PD +  +T+
Sbjct: 273 SSYGFQPDTVSYTTV 287



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 45  EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            A +L ++ T     P+    T LI   C+ GR  DA  +       G   +V  Y+ L+
Sbjct: 92  RAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 151

Query: 105 DGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIM 152
            GY +   + +A  +   M    ++P+              GR  EA+ L D ML  G  
Sbjct: 152 AGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 153 PDGLLLSTLADYNLQSSG 170
           P  +  + L +   +S+G
Sbjct: 209 PSVVTYTVLLEAVCKSTG 226



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 43/92 (46%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +E  ++ A+K+F  + D G+ P  + YN I+   C     D A+  F  +      P
Sbjct: 602 VLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMP 661

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           N +T+  LI+    E  + +   +  ++  +G
Sbjct: 662 NELTYITLIEGLANEDFLKETRDLLRELCSRG 693


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 96/174 (55%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  +D+A+  + ++   G+ P++ITY +++ G C  NR+D+A+++ +++    +K +
Sbjct: 594 FFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLD 653

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LID FCK   M+ A+ +FS++LE+G   +   Y+ LI G+    NM +A D+Y+
Sbjct: 654 IPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYK 713

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M ++ +  ++             G    A +LY  M   G++PD ++ + + +
Sbjct: 714 KMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVN 767



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 12/164 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++++A  LF +L + GL P    YN++I G+ +L  +  A+ L++K+    L+ +  
Sbjct: 666 KRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLG 725

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID   K+G +  A+ ++++M   G   + + Y+ +++G  K         ++EEM
Sbjct: 726 TYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEM 785

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDG 155
            +NN++PN+             G   EA +L+D ML  GI+PDG
Sbjct: 786 KKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDG 829



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 48/202 (23%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K+   D A +L  ++  RG+ P++++YN ++ G+C    +D A  +F  +    LKP
Sbjct: 452 WLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKP 511

Query: 61  NSITFTILID-----------------------------------AFCKEGRMDDATMMF 85
           N+ T++ILID                                     CK G+   A  + 
Sbjct: 512 NNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELL 571

Query: 86  SKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
           + M+ EK    + ++Y+ +IDG+FK   M SA   YEEMC N ISPN+            
Sbjct: 572 ANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCK 631

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
             R  +A+++ D M   G+  D
Sbjct: 632 NNRMDQALEMRDEMKNKGVKLD 653



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 12/148 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ++YN+II G+     +D AV  +E++    + PN IT+T L++  CK  RMD A  M  +
Sbjct: 585 MSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDE 644

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           M  KG K ++  Y  LIDG+ K  NM+SA  ++ E+ E  ++P+              G 
Sbjct: 645 MKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGN 704

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              A+ LY  ML++G+  D    +TL D
Sbjct: 705 MVAALDLYKKMLKDGLRCDLGTYTTLID 732



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 1/123 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALKLF +  + GL  ++   NTI+   C   + DEA +L  K+    + PN +++  +
Sbjct: 426 EEALKLFDESFETGL-ANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNV 484

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   C++  MD A ++FS +LEKG K N  TYS LIDG F++ + ++A +V   M  +NI
Sbjct: 485 MLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNI 544

Query: 129 SPN 131
             N
Sbjct: 545 EVN 547



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 13/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+ ++D A++L  ++   G+  +++   ++I G+C  N L  A+ LF+K+      PNS
Sbjct: 315 VKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNS 374

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TF++LI+ F K G M+ A   + KM   G   +V     +I G+ K Q  + A  +++E
Sbjct: 375 VTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDE 434

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             E  ++ N+             G+  EA +L   M   GI P+
Sbjct: 435 SFETGLA-NVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPN 477



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P   TY ++I        +D+A++L +++    +  N +  T LI   CK   +  A ++
Sbjct: 302 PSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVL 361

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           F KM ++GP  N VT+S LI+ + K+  M+ A + Y++M    ++P++            
Sbjct: 362 FDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLK 421

Query: 133 AGRPTEAMQLYDSMLRNGI 151
             +  EA++L+D     G+
Sbjct: 422 GQKHEEALKLFDESFETGL 440



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 57/105 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+ +L  A +L+ ++   GL PD I Y  I+ G     +  + V++FE++    + PN
Sbjct: 734 LLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPN 793

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
            + +  +I    +EG +D+A  +  +ML+KG   +  T+  L+ G
Sbjct: 794 VLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 18/190 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L  A +L+ ++   G++ D +T   ++       +  EA+++  +      +P+
Sbjct: 208 LVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPD 267

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG---PKANVVTYSCLIDGYFKSQNMKSAFD 118
           S+ +++ + A CK   +  A  +  +M EK    P     TY+ +I    K  NM  A  
Sbjct: 268 SLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQE--TYTSVILASVKQGNMDDAIR 325

Query: 119 VYEEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           + +EM  + IS N+    +             A+ L+D M + G  P+ +  S L ++  
Sbjct: 326 LKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEW-F 384

Query: 167 QSSGSQEHCI 176
           + +G  E  +
Sbjct: 385 RKNGEMEKAL 394


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 77/128 (60%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  +  A+KLF ++ ++G +PD++TYN +I G+C   RLDEA++  +KL     +P+ I
Sbjct: 228 KESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVI 287

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +  +++ + C  GR  DA  + + ML KG   +VVT++ LI+   +   +  A +V E M
Sbjct: 288 SHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMM 347

Query: 124 CENNISPN 131
            ++  +PN
Sbjct: 348 PKHGHTPN 355



 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 88/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  AL +   +   G  P+  ++N +I G+C+   +D A++  E +      P+ +T+ I
Sbjct: 337 LGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNI 396

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+ A CK+G++DDA ++ S++  KG   ++++Y+ +IDG  K    + A ++ EEMC   
Sbjct: 397 LLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKG 456

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + P++             G+  EAM+ +  + R  I P+  + +++
Sbjct: 457 LKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSI 502



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 15/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL++  ++   G+ P+  TY+ ++C  C   +L +A+Q+  +    +  P+ +
Sbjct: 161 KSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVV 217

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T+LIDA CKE  +  A  +F++M  KG K +VVTY+ LI G+ K   +  A    +++
Sbjct: 218 TCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKL 277

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                 P++             GR  +AM+L  +MLR G +P  +  + L ++
Sbjct: 278 PSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINF 330



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+ +  QL+ +G  P +I+YNT+I G   + + + AV+L E++    LKP+
Sbjct: 401 LCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPD 460

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT T ++    +EG++ +A   F  +     + N   Y+ +I G  KSQ    A D   
Sbjct: 461 LITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLA 520

Query: 122 EMCENNISPN-------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M      P        I G   E +    S L N +   GL+  +L +
Sbjct: 521 DMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLVKRSLVE 569



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A++   +L   G +PD+I++N I+   CS  R  +A++L   +      P+ +
Sbjct: 263 KGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVV 322

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF ILI+  C++G +  A  +   M + G   N  +++ LI G+   + +  A +  E M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 124 CENNISPNIA 133
                 P+I 
Sbjct: 383 VSRGCYPDIV 392



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 15/140 (10%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           L+E  +  E +T     P+ I  T LI  FCK GR  +A+ +   + E G   +V +Y+ 
Sbjct: 95  LEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNV 154

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNG 150
           LI GY KS  ++ A  V + M    +SPN A            G+  +AMQ+    L++ 
Sbjct: 155 LISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSK 211

Query: 151 IMPDGLLLSTLADYNLQSSG 170
             PD +  + L D   + SG
Sbjct: 212 CYPDVVTCTVLIDATCKESG 231


>gi|18401487|ref|NP_566575.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332642425|gb|AEE75946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 212

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 9/128 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           M+I+   L  A KL+ ++  RGL PD ITYN++I G C  N+L +A ++ +  +      
Sbjct: 54  MMIRFSSLGRAEKLYAEMIRRGLVPDTITYNSMIHGLCKQNKLAQARKVSKSCS------ 107

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
              TF  LI+ +CK  R+ D   +F +M  +G  ANV+TY+ LI G+ +  +  +A D++
Sbjct: 108 ---TFNTLINGYCKATRVKDGMNLFCEMYRRGIVANVITYTTLIHGFRQVGDFNTALDIF 164

Query: 121 EEMCENNI 128
           +EM  N +
Sbjct: 165 QEMVSNGV 172



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  + +  ++ D   YN II G C   + DEA  +F  L    L+P+  T+ ++I  F 
Sbjct: 1   MFKVMRESNMDMDTAGYNIIIHGLCKAGKFDEAGNIFTNLLISGLQPDVQTYNMMIR-FS 59

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
             GR   A  ++++M+ +G   + +TY+ +I G  K   +  A  V +     N   N  
Sbjct: 60  SLGR---AEKLYAEMIRRGLVPDTITYNSMIHGLCKQNKLAQARKVSKSCSTFNTLINGY 116

Query: 132 -IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             A R  + M L+  M R GI+ + +  +TL
Sbjct: 117 CKATRVKDGMNLFCEMYRRGIVANVITYTTL 147


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 15/167 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D+AL+LF  +     +P+ ITY T++ G C+  RLD A +L  ++      PN +TF 
Sbjct: 440 RVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFN 496

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L+  FC++G MD+A  +  +M+E G   N++TY+ L+DG  K  N + A ++   +  N
Sbjct: 497 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSN 556

Query: 127 NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +SP+I              R  EA++++  +   G+ P  ++ + +
Sbjct: 557 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKI 603



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 44/216 (20%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+  +D A +    +   G  PD I+Y T++ G C   R ++A +L +++      PN
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY- 120
            +TF   I   C++G ++ ATM+  +M E G + N+VTY+ L++G+     + SA +++ 
Sbjct: 390 EVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFY 449

Query: 121 -------------------------------EEMCENNISPNIA------------GRPT 137
                                           EM + + +PN+             G   
Sbjct: 450 SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 509

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           EA++L + M+ +G  P+ +  +TL D   +   S+E
Sbjct: 510 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEE 545



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K      A+++  ++  +G  P+I+TYN II G C   R+D+A +   +L+    +P+++
Sbjct: 192 KSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTV 251

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++T ++   C   R +D   +F++M+EK    N VT+  L+  + +   ++ A  V E+M
Sbjct: 252 SYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 311

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             +  + N              GR  +A Q  ++M   G  PD +  +T+
Sbjct: 312 SGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 69/127 (54%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + K+C+ + AL+L   L   G+ PDI+TY++II      +R++EA+++F  +  + ++P 
Sbjct: 537 ITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK 596

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  ++ A CK    D A   F+ M+  G   N +TY  LI+G      +K   D+  
Sbjct: 597 AVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLR 656

Query: 122 EMCENNI 128
           E+C   +
Sbjct: 657 ELCSRGV 663



 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 66/121 (54%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L   +  RG +P ++TY  ++   C      +A+++ +++      PN +T+ ++I+
Sbjct: 164 ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIIN 223

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C+EGR+DDA    +++   G + + V+Y+ ++ G   ++  +   +++ EM E N  P
Sbjct: 224 GMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMP 283

Query: 131 N 131
           N
Sbjct: 284 N 284



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           + +E  +D A +   +L+  G +PD ++Y T++ G C+  R ++  +LF ++      PN
Sbjct: 225 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPN 284

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TF +L+  FC+ G ++ A  +  +M   G  AN    + +I+   K   +  AF    
Sbjct: 285 EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLN 344

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M     SP+             A R  +A +L   M+R    P+ +  +T 
Sbjct: 345 NMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 396



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 15/170 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LDAA +L   +    + PD  TY  II G C   R+ EA+ L + +     +P+ +T+T
Sbjct: 128 QLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYT 184

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +L++A CK      A  +  +M  KG   N+VTY+ +I+G  +   +  A +    +   
Sbjct: 185 VLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSY 244

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
              P+             A R  +  +L+  M+    MP+ +    L  +
Sbjct: 245 GFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRF 294



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 64/124 (51%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A++L  Q+ + G  P++ITYNT++ G       +EA++L   L    + P+ +T++ 
Sbjct: 508 MDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSS 567

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I    +E R+++A  MF  + + G +   V Y+ ++    K  N   A D +  M  N 
Sbjct: 568 IIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNG 627

Query: 128 ISPN 131
             PN
Sbjct: 628 CMPN 631



 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+++  Q++  G   +    N +I   C   R+D+A Q    +      P++I++T 
Sbjct: 301 VERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTT 360

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++   C+  R +DA  +  +M+ K    N VT++  I    +   ++ A  + E+M E+ 
Sbjct: 361 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420

Query: 128 ISPNIA------------GRPTEAMQLYDSM 146
              NI             GR   A++L+ SM
Sbjct: 421 CEVNIVTYNALVNGFCVQGRVDSALELFYSM 451



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 44/204 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI    L  A +L  + T RG  PD+     +I   C   R  +A ++           +
Sbjct: 53  LIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVD 112

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK--------------------------------ML 89
              +  L+  +C+ G++D A  + +                                 ML
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 172

Query: 90  EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPT 137
            +G + +VVTY+ L++   KS     A +V +EM     +PNI             GR  
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTL 161
           +A +  + +   G  PD +  +T+
Sbjct: 233 DAREFLNRLSSYGFQPDTVSYTTV 256



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           L EA +L ++ T     P+    T LI   C+ GR  DA  +       G   +V  Y+ 
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           L+ GY +   + +A  +   M    ++P+              GR  EA+ L D ML  G
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 151 IMPDGLLLSTLADYNLQSSG 170
             P  +  + L +   +S+G
Sbjct: 176 CQPSVVTYTVLLEAVCKSTG 195



 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 43/92 (46%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +E  ++ A+K+F  + D G+ P  + YN I+   C     D A+  F  +      P
Sbjct: 571 VLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMP 630

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           N +T+  LI+    E  + +   +  ++  +G
Sbjct: 631 NELTYITLIEGLANEDFLKETRDLLRELCSRG 662


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 74/131 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +     +   +   G  P+++T+N+++ GYC +  ++EA  L + +  + ++PN
Sbjct: 518 LCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 577

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+D +CK GR+DDA  +F  ML KG K   V YS ++ G F+++   +A  ++ 
Sbjct: 578 CYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFH 637

Query: 122 EMCENNISPNI 132
           EM E+  + +I
Sbjct: 638 EMIESGTTVSI 648



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  +D A  LF ++ ++G+ P I+  N+II   C +  +D+A  + +K+    + P+
Sbjct: 200 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 259

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++++ID  CK   MD A  +  +M+E G + N +TY+ LI GY  S     +  V++
Sbjct: 260 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 319

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    + P +             GR  EA  ++DSM+  G  PD +  ST+
Sbjct: 320 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTM 371



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++  Q+ + G  P+ ITYN++I GY      +E+V++F++++   + P 
Sbjct: 270 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 329

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDV 119
                  I A  K GR ++A  +F  M+ KGPK ++++YS ++ GY  + +  +    ++
Sbjct: 330 VDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNI 389

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  M    I+PN              G   +AM +++ M   G++PD +  +T+
Sbjct: 390 FNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 443



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 48/202 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT--- 64
           +D A+ +F  + ++G+ PD +T+ T+I   C + RLD+A+  F  +  + + P+      
Sbjct: 418 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGC 477

Query: 65  ---------------------------------FTILIDAFCKEGRMDDATMMFSKMLEK 91
                                            F+ +I+  CKEGR+ +   +   M++ 
Sbjct: 478 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 537

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G + NVVT++ L++GY    NM+ AF + + M    I PN              GR  +A
Sbjct: 538 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 597

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
           + ++  ML  G+ P  +L S +
Sbjct: 598 LTVFRDMLHKGVKPTSVLYSII 619



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  L   +   G+EP+   Y T++ GYC   R+D+A+ +F  +    +KP S+ ++
Sbjct: 558 NMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 617

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++    +  R   A  MF +M+E G   ++ TY  ++ G  ++     A  + E++   
Sbjct: 618 IILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAM 677

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+  +I             GR  EA +L+D++   G++P+
Sbjct: 678 NVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPN 717



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 13/161 (8%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  +G+ P+   +N +I  Y     +D+A+ +FE +    + P+++TF  +I + C
Sbjct: 389 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 448

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--- 130
           + GR+DDA   F+ M++ G   +   Y CLI G      +  A ++  EM   +I P   
Sbjct: 449 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 508

Query: 131 --------NI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   N+   GR  E   + D M++ G  P+ +  ++L
Sbjct: 509 KYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSL 549



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L + G+L   GL PD  +Y ++I G+     +D+A  LF ++    + P  +    +
Sbjct: 173 DLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSI 231

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   CK   MD A  +  KM++ G   ++ TYS +IDG  KS+ M  A  V E+M E   
Sbjct: 232 IKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGT 291

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMP 153
            PN            I+G   E+++++  M   G++P
Sbjct: 292 RPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 328



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 14/169 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--LDEAVQLFEKLTCVQLK 59
           L K    + A  +F  +  +G +PDII+Y+T++ GY +     L +   +F  +    + 
Sbjct: 340 LFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIA 399

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN   F ILI+A+ + G MD A ++F  M  KG   + VT++ +I    +   +  A   
Sbjct: 400 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 459

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           +  M +  + P+ A            G   +A +L   M+   I P G+
Sbjct: 460 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 508



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITY-NTIICGYCSLNRLDEAVQLFEKLTCV 56
           LI+ C     L  A +L  ++ ++ + P  + Y ++II   C   R+ E   + + +   
Sbjct: 478 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 537

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             +PN +TF  L++ +C  G M++A  +   M   G + N   Y  L+DGY K+  +  A
Sbjct: 538 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 597

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
             V+ +M    + P              A R T A +++  M+ +G
Sbjct: 598 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 643



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA K+F ++ + G    I TY  ++ G C  N  DEA  L EKL  + +K + ITF I+I
Sbjct: 631 AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVI 690

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            A  K GR  +A  +F  +   G   N+ TYS +I    K ++ + A +++
Sbjct: 691 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 741



 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 58/121 (47%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  +L    ++ DIIT+N +I     + R  EA +LF+ ++   L PN  T++++
Sbjct: 665 DEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMM 724

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    KE   ++A  +F  + + G  ++    + ++        +  A +    + ENN+
Sbjct: 725 ITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNL 784

Query: 129 S 129
           +
Sbjct: 785 T 785



 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 46  AVQLFEKL---TCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
           A++LF+++    C +  P +I T+ ILID + +  R D    +  ++L+ G   +  +YS
Sbjct: 136 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS 195

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRN 149
            LI G+ K   +  A  ++ EM E  + P I                 +A  +   M+ +
Sbjct: 196 -LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 254

Query: 150 GIMPDGLLLSTLAD 163
           GI PD    S + D
Sbjct: 255 GIAPDLFTYSLIID 268


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 74/131 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +     +   +   G  P+++T+N+++ GYC +  ++EA  L + +  + ++PN
Sbjct: 462 LCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 521

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+D +CK GR+DDA  +F  ML KG K   V YS ++ G F+++   +A  ++ 
Sbjct: 522 CYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFH 581

Query: 122 EMCENNISPNI 132
           EM E+  + +I
Sbjct: 582 EMIESGTTVSI 592



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  +D A  LF ++ ++G+ P I+  N+II   C +  +D+A  + +K+    + P+
Sbjct: 144 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 203

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++++ID  CK   MD A  +  +M+E G + N +TY+ LI GY  S     +  V++
Sbjct: 204 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 263

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    + P +             GR  EA  ++DSM+  G  PD +  ST+
Sbjct: 264 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTM 315



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++  Q+ + G  P+ ITYN++I GY      +E+V++F++++   + P 
Sbjct: 214 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 273

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDV 119
                  I A  K GR ++A  +F  M+ KGPK ++++YS ++ GY  + +  +    ++
Sbjct: 274 VDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNI 333

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  M    I+PN              G   +AM +++ M   G++PD +  +T+
Sbjct: 334 FNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 387



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 48/202 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT--- 64
           +D A+ +F  + ++G+ PD +T+ T+I   C + RLD+A+  F  +  + + P+      
Sbjct: 362 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGC 421

Query: 65  ---------------------------------FTILIDAFCKEGRMDDATMMFSKMLEK 91
                                            F+ +I+  CKEGR+ +   +   M++ 
Sbjct: 422 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 481

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G + NVVT++ L++GY    NM+ AF + + M    I PN              GR  +A
Sbjct: 482 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 541

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
           + ++  ML  G+ P  +L S +
Sbjct: 542 LTVFRDMLHKGVKPTSVLYSII 563



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  L   +   G+EP+   Y T++ GYC   R+D+A+ +F  +    +KP S+ ++
Sbjct: 502 NMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 561

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++    +  R   A  MF +M+E G   ++ TY  ++ G  ++     A  + E++   
Sbjct: 562 IILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAM 621

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+  +I             GR  EA +L+D++   G++P+
Sbjct: 622 NVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPN 661



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  +G+ P+   +N +I  Y     +D+A+ +FE +    + P+++TF  +I + C
Sbjct: 333 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 392

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--- 130
           + GR+DDA   F+ M++ G   +   Y CLI G      +  A ++  EM   +I P   
Sbjct: 393 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 452

Query: 131 --------NI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   N+   GR  E   + D M++ G  P+ +  ++L +
Sbjct: 453 KYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLME 495



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L + G+L   GL PD  +Y ++I G+     +D+A  LF ++    + P  +    +
Sbjct: 117 DLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSI 175

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   CK   MD A  +  KM++ G   ++ TYS +IDG  KS+ M  A  V E+M E   
Sbjct: 176 IKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGT 235

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMP 153
            PN            I+G   E+++++  M   G++P
Sbjct: 236 RPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 272



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 14/169 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--LDEAVQLFEKLTCVQLK 59
           L K    + A  +F  +  +G +PDII+Y+T++ GY +     L +   +F  +    + 
Sbjct: 284 LFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIA 343

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN   F ILI+A+ + G MD A ++F  M  KG   + VT++ +I    +   +  A   
Sbjct: 344 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 403

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           +  M +  + P+ A            G   +A +L   M+   I P G+
Sbjct: 404 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 452



 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA K+F ++ + G    I TY  ++ G C  N  DEA  L EKL  + +K + ITF I+I
Sbjct: 575 AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVI 634

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            A  K GR  +A  +F  +   G   N+ TYS +I    K ++ + A +++
Sbjct: 635 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 685



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITY-NTIICGYCSLNRLDEAVQLFEKLTCV 56
           LI+ C     L  A +L  ++ ++ + P  + Y ++II   C   R+ E   + + +   
Sbjct: 422 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 481

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             +PN +TF  L++ +C  G M++A  +   M   G + N   Y  L+DGY K+  +  A
Sbjct: 482 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 541

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
             V+ +M    + P              A R T A +++  M+ +G
Sbjct: 542 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 587



 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 58/121 (47%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  +L    ++ DIIT+N +I     + R  EA +LF+ ++   L PN  T++++
Sbjct: 609 DEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMM 668

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    KE   ++A  +F  + + G  ++    + ++        +  A +    + ENN+
Sbjct: 669 ITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNL 728

Query: 129 S 129
           +
Sbjct: 729 T 729



 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 14/129 (10%)

Query: 48  QLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           Q  ++  C +  P +I T+ ILID + +  R D    +  ++L+ G   +  +YS LI G
Sbjct: 85  QRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYG 143

Query: 107 YFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           + K   +  A  ++ EM E  + P I                 +A  +   M+ +GI PD
Sbjct: 144 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 203

Query: 155 GLLLSTLAD 163
               S + D
Sbjct: 204 LFTYSLIID 212


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D A +L   +   GL PD+I+YNT+ICG+C  ++L EA     K+    ++PN
Sbjct: 261 LCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPN 320

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+ FCK G M +A  +    + KG   +  TYS LI+G     +M  A  V+ 
Sbjct: 321 EFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFY 380

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E  E     +I             G   +A+QL   M+ +G  PD      +  YNL  +
Sbjct: 381 EAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD------IWTYNLVVN 434

Query: 170 G 170
           G
Sbjct: 435 G 435



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L   + + G  PDI TYN ++ G C +  L +A  +          P+  TF  LID
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLID 469

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK+  MD A  +   ML  G   +V+TY+ L++G  K++ + +  D ++ M E   +P
Sbjct: 470 GYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTP 529

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI              + +EAM+L+  M   G+ PD + L TL
Sbjct: 530 NIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL 572



 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 13/164 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNS 62
           K+  +  A++LF ++  RGL PDI+T  T+ICG CS   LD+A +LF  +    +   ++
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             F I+I+AFC++  +  A  +F KM       +  TY  +ID Y K+ N+  A     E
Sbjct: 603 AIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
                + P+            +  R +EA+ + + M++NGI+P+
Sbjct: 663 NISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 69/117 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++D A+++   +   G+ PD+ITYNT++ G C   +LD  V  F+ +      PN I
Sbjct: 473 KQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNII 532

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           T+ ILI++FCK+ ++ +A  +F +M  +G   ++VT   LI G   +  +  A++++
Sbjct: 533 TYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELF 589



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+ ++  + KLF ++  RG+ P++ T+N  I G C    +DEA +L E +    L P
Sbjct: 225 VLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTP 284

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + I++  LI  FCK  ++ +A     KM+  G + N  TY+ +I+G+ K+  M++A  + 
Sbjct: 285 DVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKIL 344

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            +       P+         +   S L NG+  DG +   +A +        +H I
Sbjct: 345 RDAMFKGFIPD---------EFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSI 391



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++  +G+ PDI+T+N +I   C    + E+ +LF K+    + PN  TF I I 
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C++G +D+A  +   ++ +G   +V++Y+ LI G+ K   +  A     +M  + + P
Sbjct: 260 GLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEP 319

Query: 131 N-------IAGR-PTEAMQLYDSMLRN----GIMPDGLLLSTLAD 163
           N       I G      MQ  D +LR+    G +PD    S+L +
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364



 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ +F +  ++G +  II YNT++ G      + +A+QL + +      P+  T+ +
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  CK G + DA  + +  + KG   ++ T++ LIDGY K +NM  A ++ + M  + 
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+P++            A +    +  + +ML  G  P+ +  + L +
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIE 539



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL+L   +  +G E + ++Y  +I G+   N   EA  LF+++    + P+ +TF  LI
Sbjct: 164 AALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLI 223

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              CK+G + ++  +FSK++++G   N+ T++  I G  +   +  A  + E +    ++
Sbjct: 224 HVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLT 283

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P++    T            EA      M+ +G+ P+    +T+ +
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIIN 329



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+ +F ++     EP + +YN I+          +A +++ ++  + + P+  T TI
Sbjct: 92  VQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            + +FC  GR   A  + + M  +G + N V+Y  +I G++K      A+ +++EM +  
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           I P+I             G   E+ +L+  +++ G+ P+
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPN 250



 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++  +   A K++ ++ D G+ PD+ T+   +  +C   R   A++L   +     + 
Sbjct: 120 ILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEF 179

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++++  +I  F KE    +A  +F +ML++G   +++T++ LI    K  N++ +  ++
Sbjct: 180 NAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLF 239

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++ +  + PN+             G   EA +L +S++  G+ PD +  +TL
Sbjct: 240 SKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTL 292


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 51/218 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQL------------ 49
           L K+  +  AL LF Q+T +G++PD+ TYN +I G C+ +R  EA  L            
Sbjct: 233 LCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPD 292

Query: 50  -----------------------FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86
                                  F  +  + ++ + +T+T +I A C   +M DA  +F 
Sbjct: 293 VQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFD 352

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AG 134
            M+ KG   N+VTY+ LI G+ +++NM  A     EM  N + PN+            AG
Sbjct: 353 LMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAG 412

Query: 135 RPTEAMQLYDSMLRNGIMPD----GLLLSTLADYNLQS 168
           +P  A +L+  M ++G +P+     ++L  L   N  S
Sbjct: 413 KPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHS 450



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  H      + G +   G+EP I+T+NTI+ G C    + +A++  + L  +  + +
Sbjct: 128 LCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESD 187

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T   + +  CK G    A     KM EK    +V  YS ++DG  K   +  A +++ 
Sbjct: 188 SYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFS 247

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           +M    I P+       I G     R  EA  L  +M+R GIMPD    + +A
Sbjct: 248 QMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIA 300



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 18/172 (10%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+++F  +  +G  P+I+TY ++I G+C    +++A+    ++    L PN +T++ LI 
Sbjct: 347 AMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIG 406

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+   A  +F  M + G   N+ T + ++DG FK      A  ++ E+ + N   
Sbjct: 407 GVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDL 466

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           NI            +G+  +A++L+  +   G+  D      +  YN+   G
Sbjct: 467 NIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKID------VVTYNIMIKG 512



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H  AAL    ++ ++    D+  Y+ ++ G C    + EA+ LF ++T   ++P+
Sbjct: 198 LCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPD 257

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI   C   R  +A  + + M+ KG   +V T++ +   +FK+  +  A  ++ 
Sbjct: 258 LFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFS 317

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
            M    I  ++    +            +AM+++D M+  G +P+ +  ++L
Sbjct: 318 FMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSL 369



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 35/160 (21%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A+   G++ + GL+P+++T++T+I G C   +   A +LF  +      PN  T  
Sbjct: 378 NMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCA 437

Query: 67  ILIDAF-----------------------------------CKEGRMDDATMMFSKMLEK 91
           I++D                                     C  G+++DA  +FS +  K
Sbjct: 438 IILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSK 497

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           G K +VVTY+ +I G  K   +  A D+  +M EN   PN
Sbjct: 498 GVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPN 537



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ AL+LF  L+ +G++ D++TYN +I G C    LD+A  L  K+      PN  T+ +
Sbjct: 484 LNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNV 543

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +    +  ++  +T     M +KG +A+  T   LI+ YF +     A +V+
Sbjct: 544 FVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFLIN-YFSANKENRALEVF 595



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ LF +L     + +II YN I+ G CS  +L++A++LF  L+   +K + +T+ I+I 
Sbjct: 452 AMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIK 511

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
             CKEG +DDA  +  KM E G   N  TY+  + G  +
Sbjct: 512 GLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLR 550



 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL  + ++      P +  +N +      +     A+ L + ++ + +KP   T  I
Sbjct: 64  VDVALDFYHKMVTMKPFPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNI 123

Query: 68  LIDAFCKEGRMDDATMMFSK---MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +I+  C   R+  A   FS    M + G + ++VT++ +++G     N+  A    + +
Sbjct: 124 VINCLC---RLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHL 179


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  +  Q+ DRG  PD  T+NT+I   CS NRL+EA+ L  +LT   L P+
Sbjct: 345 LSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPD 404

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF ILI+A CK G       +F +M   G   + VTY+ LID       + +A D+ +
Sbjct: 405 VYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLK 464

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM  N    +               R  EA +++D M  +GI    +  +TL D
Sbjct: 465 EMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLID 518



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL L  ++   G     +TYNTII   C   R++EA ++F+++    +  +++TF  LID
Sbjct: 459 ALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLID 518

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK  R+DDAT +  +M+++G + + +TY+ ++  Y K  ++K A D+ E M  N    
Sbjct: 519 GLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEI 578

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMP 153
           ++            AGR   A++L   M   GI P
Sbjct: 579 DVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRP 613



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 12/160 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           ++ ++TDRG++PD++T NT+I   C  +++  AV + E+++   + P+  TFT L+  F 
Sbjct: 182 VYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFI 241

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           +EG ++ A  + +KM+E G     VT + LI+GY K   ++ A    ++   +   P+  
Sbjct: 242 EEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQV 301

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                       G  + A+++ D ML+ G  PD    +T+
Sbjct: 302 TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTV 341



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A ++F Q+   G+    +T+NT+I G C   R+D+A +L E++    L+P+
Sbjct: 485 LCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPS 544

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+  ++  +CK+G +  A  +   M   G + +VVTY  LI+G  K+   + A  +  
Sbjct: 545 NITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLR 604

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            M    I P     P     +  S+ R   + D L L
Sbjct: 605 GMRIKGIRPT----PKAYNPVIQSLFRRNNLRDALSL 637



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A +L  Q+   GL+P  ITYN+I+  YC    L +A  + E +T    + +
Sbjct: 520 LCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEID 579

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI+  CK GR   A  +   M  KG +     Y+ +I   F+  N++ A  ++ 
Sbjct: 580 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFR 639

Query: 122 EMCENNISPNI-------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM E    P+               G   EA      M+  G MP+
Sbjct: 640 EMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPE 685



 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 89/171 (52%), Gaps = 14/171 (8%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + + HL   ++LF ++   G  PD +TYN +I   CS+ +L  A+ L +++       ++
Sbjct: 418 VGDPHL--GIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRST 475

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+  +IDA CK+ R+++A  +F +M   G   + VT++ LIDG  K++ +  A ++ E+
Sbjct: 476 VTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQ 535

Query: 123 MCENNISP-NIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           M +  + P NI            G   +A  + ++M  NG   D +   TL
Sbjct: 536 MVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTL 586



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+E  ++AAL++  ++ + G  P  +T N +I GYC + R+++A+   +K      +P+
Sbjct: 240 FIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPD 299

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+   +   C+ G +  A  +   ML++G   +V TY+ +I+   K+  +  A  +  
Sbjct: 300 QVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVN 359

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           +M +    P+               R  EA+ L   +   G+ PD
Sbjct: 360 QMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPD 404



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G EPD +TYNT +   C    +  A+++ + +      P+  T+  +I+   K G +D+A
Sbjct: 295 GFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEA 354

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             + ++M+++G   +  T++ LI        ++ A D+  E+    +SP++         
Sbjct: 355 KGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINA 414

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
               G P   ++L++ M  +G  PD +  + L D+
Sbjct: 415 LCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDH 449



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFE-KLTCVQLKPNSITFTILIDAF 72
           L  ++   G E       + +  Y  L R D+AV L   +L    ++ ++  +  L++  
Sbjct: 111 LVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVL 170

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
            +  RM     ++++M ++G + +VVT + LI    ++  +++A  + EEM  + ++P+
Sbjct: 171 AEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPD 229


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 18/181 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D A +L   +   GL PD+I+YNT+ICG+C  ++L EA     K+    ++PN
Sbjct: 261 LCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPN 320

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  +I+ FCK G M +A  +    + KG   +  TYS LI+G     +M  A  V+ 
Sbjct: 321 EFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFY 380

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E  E     +I             G   +A+QL   M+ +G  PD      +  YNL  +
Sbjct: 381 EAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD------IWTYNLVVN 434

Query: 170 G 170
           G
Sbjct: 435 G 435



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+L   + + G  PDI TYN ++ G C +  L +A  +          P+  TF  LID
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLID 469

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK+  MD A  +   ML  G   +V+TY+ L++G  K++ + +  D ++ M E   +P
Sbjct: 470 GYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTP 529

Query: 131 NIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           NI              + +EAM+L+  M   G+ PD + L TL
Sbjct: 530 NIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL 572



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 69/117 (58%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++D A+++   +   G+ PD+ITYNT++ G C   +LD  V  F+ +      PN I
Sbjct: 473 KQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNII 532

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           T+ ILI++FCK+ ++ +A  +F +M  +G   ++VT   LI G   +  +  A++++
Sbjct: 533 TYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELF 589



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 13/164 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-VQLKPNS 62
           K+  +  A++LF ++  RGL PDI+T  T+ICG CS   LD+A +LF  +    +   ++
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             F I+I+AFC +  +  A  +F KM       +  TY  +ID Y K+ N+  A     E
Sbjct: 603 AIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
                + P+            +  R +EA+ + + M++NGI+P+
Sbjct: 663 NISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K+ ++  + KLF ++  RG+ P++ T+N  I G C    +DEA +L E +    L P
Sbjct: 225 VLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTP 284

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + I++  LI  FCK  ++ +A     KM+  G + N  TY+ +I+G+ K+  M++A  + 
Sbjct: 285 DVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKIL 344

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            +       P+         +   S L NG+  DG +   +A +        +H I
Sbjct: 345 RDAMFKGFIPD---------EFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSI 391



 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF ++  +G+ PDI+T+N +I   C    + E+ +LF K+    + PN  TF I I 
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C++G +D+A  +   ++ +G   +V++Y+ LI G+ K   +  A     +M  + + P
Sbjct: 260 GLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEP 319

Query: 131 N-------IAGR-PTEAMQLYDSMLRN----GIMPDGLLLSTLAD 163
           N       I G      MQ  D +LR+    G +PD    S+L +
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364



 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+ +F +  ++G +  II YNT++ G      + +A+QL + +      P+  T+ +
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++  CK G + DA  + +  + KG   ++ T++ LIDGY K +NM  A ++ + M  + 
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           I+P++            A +    +  + +ML  G  P+ +  + L +
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIE 539



 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL+L   +  +G E + ++Y  +I G+   N   EA  LF+++    + P+ +TF  LI
Sbjct: 164 AALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLI 223

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              CK+G + ++  +FSK++++G   N+ T++  I G  +   +  A  + E +    ++
Sbjct: 224 HVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLT 283

Query: 130 PNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
           P++    T            EA      M+ +G+ P+    +T+ +
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIIN 329



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+ +F ++     EP + +YN I+          +A +++ ++  + + P+  T TI
Sbjct: 92  VQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            + +FC  GR   A  + + M  +G + N V+Y  +I G++K      A+ +++EM +  
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           I P+I             G   E+ +L+  +++ G+ P+
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPN 250



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L++  +   A K++ ++ D G+ PD+ T+   +  +C   R   A++L   +     + 
Sbjct: 120 ILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEF 179

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++++  +I  F KE    +A  +F +ML++G   +++T++ LI    K  N++ +  ++
Sbjct: 180 NAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLF 239

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++ +  + PN+             G   EA +L +S++  G+ PD +  +TL
Sbjct: 240 SKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTL 292


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 70/130 (53%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L+  L  F QL + GLEPD+ITYN +I G     RL+EAV LF ++    + PN
Sbjct: 1019 LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 1078

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              T+  LI    K G+  +A  M+ ++L KG K NV TY+ LI GY  S +  SA+  Y 
Sbjct: 1079 LYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYG 1138

Query: 122  EMCENNISPN 131
             M      PN
Sbjct: 1139 RMIVGGCLPN 1148



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+K   ++ A  LF ++ + G + +   YN ++ G+      ++   LF+ +    + P+
Sbjct: 949  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 1008

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++TI+ID  CK G+++D    F ++LE G + +++TY+ LIDG  KS+ ++ A  ++ 
Sbjct: 1009 IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 1068

Query: 122  EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            EM +  I PN+            AG+  EA ++Y+ +L  G  P+
Sbjct: 1069 EMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1113



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K   ++  LK+  ++  +G E   +TYNTII G     RL++A+ L+  L      P   
Sbjct: 881  KSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPC 940

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+  L+D   K GR++DA  +F++MLE G KAN   Y+ L++G+  + N +    ++++M
Sbjct: 941  TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM 1000

Query: 124  CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +  I+P+I            AG+  + +  +  +L  G+ PD +  + L D
Sbjct: 1001 VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLID 1052



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K CHL      F  + D+G+ PDI +Y  II   C   +L++ +  F +L  + L+P+ I
Sbjct: 992  KVCHL------FQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLI 1045

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            T+ +LID   K  R+++A  +F++M +KG   N+ TY+ LI    K+     A  +YEE+
Sbjct: 1046 TYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1105

Query: 124  CENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
                  PN            ++G    A   Y  M+  G +P+
Sbjct: 1106 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1148



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++  L L  ++   G++P++ +Y   I       R DEA ++  ++     KP+ I
Sbjct: 286 KRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVI 345

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T+LI   C  GR+ DA  +F KM +   K + VTY  L+D +  +   +S  +++  M
Sbjct: 346 THTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAM 405

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             +  + N+             GR  EA++++D M + GI+P+
Sbjct: 406 KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPE 448



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F ++  +G+ P+  +YN++I G+   +R  +A++LF+ +     KPN  T  + I+
Sbjct: 433 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFIN 492

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            + K G    A   +  M  KG   +VV  + ++ G  KS  +  A  V+ E+    +SP
Sbjct: 493 YYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSP 552

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +             A +  EA++++  M+ N  +PD L++++L D
Sbjct: 553 DTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLID 597



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 12/177 (6%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
             D A ++  ++ + G +PD+IT+  +I   C   R+ +A  +F K+     KP+ +T+ 
Sbjct: 324 RFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 383

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L+D F   G       +++ M   G   NVV Y+ +ID   +   +  A ++++EM + 
Sbjct: 384 TLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 443

Query: 127 NISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            I P        I+G     R  +A++L+  M  +G  P+G       +Y  +S  S
Sbjct: 444 GIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGES 500



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A ++F QL +  LEP   TYNT++ G     ++ E + L E++      PN
Sbjct: 599 LYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 658

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  ++D  CK G ++DA  M   M  KG   ++ +Y+ +I G  K +    AF ++ 
Sbjct: 659 LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFC 718

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           +M +  + P+ A   T    +  S ++ G+M + L +  + +Y LQ
Sbjct: 719 QM-KKVLIPDYATLCT----ILPSFVKIGLMKEALHI--IKEYFLQ 757



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++ +  +  +G+ PD++  N ++ G     RL  A ++F +L  + + P++IT+T++I 
Sbjct: 503 AIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK 562

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              K  + D+A  +F  M+E     +V+  + LID  +K+     A+ ++ ++ E N+ P
Sbjct: 563 CCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEP 622

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                          G+  E M L + M  +   P+ +  +T+ D
Sbjct: 623 TDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 667



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A ++F +L   G+ PD ITY  +I      ++ DEAV++F  +      P+
Sbjct: 529 LAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPD 588

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +    LID   K GR D+A  +F ++ E   +    TY+ L+ G  +   +K    + E
Sbjct: 589 VLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLE 648

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM  +N  PN+             G   +A+ +  SM   G +PD      L+ YN
Sbjct: 649 EMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD------LSSYN 698



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +L  +    G+     +YN++ICG    N +D A  LF ++  +   P+  T+ +L+D
Sbjct: 818 AHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLD 877

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A  K  R+++   +  +M  KG ++  VTY+ +I G  KS+ ++ A D+Y  +     SP
Sbjct: 878 AMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSP 937

Query: 131 N------------IAGRPTEAMQLYDSMLRNG 150
                         AGR  +A  L++ ML  G
Sbjct: 938 TPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 969



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           + ++++  +   G   +++ Y  +I   C + R+ EA+++F+++    + P   ++  LI
Sbjct: 397 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 456

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             F K  R  DA  +F  M   GPK N  T+   I+ Y KS     A   YE M    I 
Sbjct: 457 SGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIV 516

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           P++            +GR   A +++  +   G+ PD
Sbjct: 517 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 553



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L+ E  +D A  LF ++ + G  PD  TYN ++       R++E +++ E++     +  
Sbjct: 844  LVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYEST 903

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +T+  +I    K  R++ A  ++  ++ +G      TY  L+DG  K+  ++ A +++ 
Sbjct: 904  YVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFN 963

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
            EM E     N            IAG   +   L+  M+  GI PD
Sbjct: 964  EMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 1008



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           M+IK C      D A+K+F  + +    PD++  N++I       R DEA Q+F +L  +
Sbjct: 559 MMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEM 618

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L+P   T+  L+    +EG++ +   +  +M       N++TY+ ++D   K+  +  A
Sbjct: 619 NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDA 678

Query: 117 FDVYEEMCENNISPNIA 133
            D+   M      P+++
Sbjct: 679 LDMLYSMTTKGCIPDLS 695



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K   L+ A+ LF ++  +G+ P++ TYN++I       +  EA +++E+L     KPN
Sbjct: 1054 LGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1113

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              T+  LI  +   G  D A   + +M+  G   N  T  C I    K+  +K   D YE
Sbjct: 1114 VFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST--CHIHELMKT-FLKGDSDSYE 1170



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL +   +T +G  PD+ +YNT+I G     R +EA  +F ++  V L P+
Sbjct: 669 LCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 727

Query: 62  SITFTILIDAFCKEGRMDDATMMFSK-MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
             T   ++ +F K G M +A  +  +  L+ G K +  +   L++G  K    + + +  
Sbjct: 728 YATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFA 787

Query: 121 EEMCENNIS 129
           E +  + I+
Sbjct: 788 EIIASSGIT 796



 Score = 38.5 bits (88), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 16/139 (11%)

Query: 39  SLNRLDEAVQLFEKLTCVQLKPNSITFTI----LIDAFCKEGRMDDATMMFSKMLEKGPK 94
           +L   D   +  E+      +P  +  T     ++D     GR+ D   +F  M  +  K
Sbjct: 142 ALRSADGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQRQIVK 201

Query: 95  ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQL 142
           ANV T++ +  G      ++SA      M E  I  N             +G   EA+++
Sbjct: 202 ANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEV 261

Query: 143 YDSMLRNGIMPDGLLLSTL 161
           Y  M+ +G++P     S L
Sbjct: 262 YKVMMVDGVVPSVRTYSVL 280



 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 12/164 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           ++K+   + +++    +   G+  D      +I   C   +  EA +L +K     +   
Sbjct: 774 ILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLK 833

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + ++  LI     E  +D A  +F++M E G   +  TY+ L+D   KS  ++    V E
Sbjct: 834 TGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQE 893

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMP 153
           EM               I+G     R  +A+ LY +++  G  P
Sbjct: 894 EMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSP 937



 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 28  ITYNTIICGYC-----SLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
           + + T  C Y         R+ +  ++F+ +    +K N  TF  +      EG +  A 
Sbjct: 165 VVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAP 224

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           +    M E G   N  TY+ L+    KS   + A +VY+ M  + + P++
Sbjct: 225 VALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSV 274


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 18/170 (10%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A   FG +  R   PD++TYNT++ G   L R DEA  LF+++   +  P+  TF  L
Sbjct: 422 EKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTL 481

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID   K GRM+DA    +++++ G   N   Y+ LI G+ +S  +   ++++++M E + 
Sbjct: 482 IDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSC 541

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
            P+              G  + AM+L   M+R G  P       LA YN+
Sbjct: 542 FPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTP------ALATYNV 585



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++F  +   G  PD + YN +I       ++DEA++L E +    + P+  T+ I+ID
Sbjct: 354 ALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVID 413

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                GR + A   F  M  +    +VVTY+ L++G  K +    A D+++EM  N   P
Sbjct: 414 VLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMP 473

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPDGL 156
           ++    T    L D++ + G M D L
Sbjct: 474 DLTTFGT----LIDTLAKAGRMEDAL 495



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 68/131 (51%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ AL+   +L   G  P+   YN +I G+C   ++D+  +LF+ +      P+
Sbjct: 485 LAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPD 544

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SIT+TIL+  F + G    A  +  +M+ +G    + TY+ LI     +  ++ A+ +++
Sbjct: 545 SITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFK 604

Query: 122 EMCENNISPNI 132
           EM     +P++
Sbjct: 605 EMIAKGFNPDM 615



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ AL LF +    G+  D+ TY+ ++  +    R  +A+++F  +      P+
Sbjct: 310 LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPD 369

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ + +LI    K+G++D+A  +   M  KG   +  TY+ +ID        + A+  + 
Sbjct: 370 TVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFG 429

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M     SP++              R  EA  L+D M  N  MPD     TL D  L  +
Sbjct: 430 MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLID-TLAKA 488

Query: 170 GSQE 173
           G  E
Sbjct: 489 GRME 492



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            I+   L  A +LF     +   PD+ TYN +I   C   +L+EA+ LF++     +  +
Sbjct: 276 FIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLD 334

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ L+DAF K GR   A  +F  M + G   + V Y+ LI    K   +  A ++ E
Sbjct: 335 VFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLE 394

Query: 122 EMCENNISP-----NIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    I P     NI        GR  +A   +  M R    PD +  +TL
Sbjct: 395 DMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTL 446



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQLKPNSITFTILIDAFCKEGRMDD 80
           PD++ YNT+I GYC     D A+ +F +L    +C   KPN+++F  L+   CK  R  D
Sbjct: 123 PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSC---KPNAVSFDTLVIFLCKMSRATD 179

Query: 81  ATMMFSKMLEKGPKANVVTYSCLI 104
           A  +F +ML  G KA+V   + LI
Sbjct: 180 ALAVFQEMLGAGLKADVNVCNTLI 203



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 26/186 (13%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL +F ++   GL+ D+   NT+I   C L  L +A +L   +T      ++ T+ IL++
Sbjct: 180 ALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVN 239

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           A C+ G+M +           G   + V Y+ +I G+ +   +  A  ++E        P
Sbjct: 240 AHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVP 299

Query: 131 NI-----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD---------------Y 164
           ++           + +  EA+ L+    + G++ D    S L D               Y
Sbjct: 300 DVFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFY 359

Query: 165 NLQSSG 170
           N+Q +G
Sbjct: 360 NMQKAG 365



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 8   LDAALKLFGQLTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKL--TCVQLKPNSI 63
           LDAA+ +   +  RG   +PD + +   +   C + R+++A+ LF+ +  TC    P+ +
Sbjct: 69  LDAAMGMLDDMR-RGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETC-DCAPDVV 126

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            +  LI  +CK G  D A  MF ++ ++G  K N V++  L+    K      A  V++E
Sbjct: 127 AYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQE 186

Query: 123 MCENNISPNI 132
           M    +  ++
Sbjct: 187 MLGAGLKADV 196



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D   +LF  + +    PD ITY  ++ G+        A++L +++      P   T+ 
Sbjct: 525 QVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYN 584

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103
           +LI +    G+++DA  +F +M+ KG   ++ TYS L
Sbjct: 585 VLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 621


>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
 gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
          Length = 374

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 13/156 (8%)

Query: 19  TDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           T  G  PD+++YNT+I G     R LD A  LF+++    L P+ +T+  +I A  K   
Sbjct: 194 TRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARA 253

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----- 132
           MD A ++  +M++ G   N +T++ L+ GY  S     A  V++ MC + + P++     
Sbjct: 254 MDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNT 313

Query: 133 -------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                   GR  EA +++DSM++ G  P+     TL
Sbjct: 314 LMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTL 349



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 12/156 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A  LF Q+ D+GL PD++TYN+II        +D+A  +  ++      PN IT   
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +C  G+ +DA  +F +M   G + +V TY+ L+    K+     A  +++ M +  
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 128 ISPNIA-------GRPTEA-----MQLYDSMLRNGI 151
             PN A       G  TE        L D M+RNGI
Sbjct: 339 HKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGI 374



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 21/184 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-----LKPNS 62
           +D AL+    L   G  P++ +Y  ++ G C  NR  +A+ L   +           P+ 
Sbjct: 146 MDIALRRMPVL---GCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDV 202

Query: 63  ITFTILIDAFCKEGR-MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +++  +I+   +EGR +D A  +F +ML++G   +VVTY+ +I    K++ M  A  V  
Sbjct: 203 VSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLV 262

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M +N   PN             +G+P +A+ ++  M R+G+ PD    +TL  Y  ++ 
Sbjct: 263 RMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNG 322

Query: 170 GSQE 173
            S E
Sbjct: 323 RSME 326



 Score = 43.1 bits (100), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 21/130 (16%)

Query: 46  AVQLFEKLTCV---QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           A+ LF ++  V   ++ PN IT++++ID   + G +D A     +++  G  A  +T+S 
Sbjct: 72  AISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSP 131

Query: 103 LIDGYFKSQNMKSAFDV-YEEMCENNISPNI------------AGRPTEAMQLYDSML-- 147
           L+      +    A D+    M     +PN+              R  +A+ L  +M+  
Sbjct: 132 LLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVA 191

Query: 148 ---RNGIMPD 154
              R G  PD
Sbjct: 192 DDTRGGYPPD 201


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 12/162 (7%)

Query: 5   ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64
           E  ++   +L  ++T RG++PDI TYN ++ G C++ +LD+A++L+++     L  N  T
Sbjct: 536 EGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHT 595

Query: 65  FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
           + I+++ +CK  R++D   +F+++L K  + N + Y+ +I  + ++ N+ +A  + E M 
Sbjct: 596 YGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMK 655

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
              I PN A            G   +A  L D M + G +P+
Sbjct: 656 SKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPN 697



 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 72/129 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++ A++LF ++   G+ P+++TYN II G C   RLD A +L EK+T   ++PN
Sbjct: 253 LCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPN 312

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI+   K    D    +  +M+  G   NVV ++ LIDGY K  N++ A  + +
Sbjct: 313 LKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKD 372

Query: 122 EMCENNISP 130
            M   NI+P
Sbjct: 373 VMISKNITP 381



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 68/116 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A  L  ++   G  P+++ Y  +I GYC L ++D A   + ++    + PN  T+T+
Sbjct: 679 VEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTV 738

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           +ID +CK G M+ A  +  KM E G   +VVTY+ L +G+ K+ +M +AF V ++M
Sbjct: 739 MIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQM 794



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A ++  ++ +RGL  D ITYN +I G+C+  +++   +L E++T   ++P+  T+  
Sbjct: 504 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 563

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           L+   C  G++DDA  ++ +    G  +N+ TY  +++GY K+  ++   +++ E+    
Sbjct: 564 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 623

Query: 126 ---NNISPNIA-------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              N+I  NI        G    A+QL ++M   GI+P+    S+L
Sbjct: 624 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSL 669



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K    +   ++F ++   G  PD+ ++  +I   C   +++ A++LF K+  + + PN
Sbjct: 219 LVKANEFEKCCEVF-RVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPN 277

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +I+  C+ GR+D+A  +  KM  KG + N+ TY  LI+G  K         V +
Sbjct: 278 VVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLD 337

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM  +  +PN+             G    A+++ D M+   I P  + L +L
Sbjct: 338 EMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSL 389



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AAL+L   +  +G+ P+  TY+++I G C++  +++A  L +++      PN + +T LI
Sbjct: 646 AALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALI 705

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             +CK G+MD A   + +M+      N  TY+ +IDGY K  NM+ A ++  +M E+ I 
Sbjct: 706 GGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIV 765

Query: 130 PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           P++            A     A ++ D M   G+  D +  +TL 
Sbjct: 766 PDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 810



 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF +L  + +E + I YN II  +C    +  A+QL E +    + PN  T++ LI   C
Sbjct: 615 LFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVC 674

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-- 131
             G ++DA  +  +M ++G   NVV Y+ LI GY K   M +A   + EM   NI PN  
Sbjct: 675 NIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKF 734

Query: 132 ----------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
                       G   +A  L   M  +GI+PD      +  YN+ ++G
Sbjct: 735 TYTVMIDGYCKLGNMEKANNLLIKMKESGIVPD------VVTYNVLTNG 777



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   LD A +L  ++T +G++P++ TY  +I G   LN  D+   + +++      PN
Sbjct: 288 LCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPN 347

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  LID +CK G ++ A  +   M+ K      VT   L+ G+ KS  ++ A +  E
Sbjct: 348 VVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALE 407

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           E+  + +S +               R   A +    ML     P  LLL+ L 
Sbjct: 408 EILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLV 460



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K+    +A +    +  R   P  +    ++CG C   +  EA +L+ +L       
Sbjct: 427 WLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPA 486

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T   LI   C  G++ +A+ +  +MLE+G   + +TY+ LI G+     ++  F + 
Sbjct: 487 SKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLR 546

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           EEM +  I P+I             G+  +A++L+D    +G      L+S +  Y +  
Sbjct: 547 EEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASG------LISNIHTYGIMM 600

Query: 169 SG 170
            G
Sbjct: 601 EG 602



 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A   + ++    + P+  TY  +I GYC L  +++A  L  K+    + P+ +T+ 
Sbjct: 713 QMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYN 772

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
           +L + FCK   MD+A  +  +M  +G   + +TY+ L+ G+
Sbjct: 773 VLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 813



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK    D    +  ++   G  P+++ +N +I GYC +  ++ A+++ + +    + P 
Sbjct: 323 LIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPT 382

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S+T   L+  FCK  +++ A     ++L  G   +      ++    K     SAF   +
Sbjct: 383 SVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTK 442

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNG 150
            M   N  P+              G+  EA +L+  +L  G
Sbjct: 443 MMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG 483



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 32  TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
           +++   C   R   A +  + +     +P+ +  T+L+   CK+G+  +AT ++ ++LEK
Sbjct: 423 SVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEK 482

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGRPTEA 139
           G  A+ VT + LI G   +  +  A  + +EM E     + I+ N         G+    
Sbjct: 483 GSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGC 542

Query: 140 MQLYDSMLRNGIMPD 154
            +L + M + GI PD
Sbjct: 543 FRLREEMTKRGIQPD 557


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  F ++  +GL PD  T + ++ G C   ++  A +  E +    +  N+  + +LID
Sbjct: 332 ALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLID 391

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK G +D+A +  ++M E G + NVVTYS LIDG+ K+  M+ A  +Y EM    + P
Sbjct: 392 EYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEP 451

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           N+             G    A  L   M   GI  + + +S L D
Sbjct: 452 NVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVD 496



 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L    +LF ++  RG+ P ++TYNT+I        + +A ++++++   ++ PN
Sbjct: 148 LVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPN 207

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +I A C+E  + DA  +F +M E G + N+ TY+ L+  +FK  N+K A   Y 
Sbjct: 208 VVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYY 267

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           ++ +  + PN             A R TEA  ++  M R  + P   + ++L     +S 
Sbjct: 268 DLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSG 327

Query: 170 GSQE 173
            +QE
Sbjct: 328 YAQE 331



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 71/125 (56%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +  A +    +   G+  +   YN +I  YC    LDEA+    +++ V ++PN +T++
Sbjct: 363 QMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYS 422

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LID   K G M+ A  ++++M+ KG + NVVTY+ LI G+ K+ +M +AF + +EM E 
Sbjct: 423 SLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEK 482

Query: 127 NISPN 131
            I  N
Sbjct: 483 GIYSN 487



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 18/169 (10%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +LD AL    ++++ G+EP+++TY+++I G+     ++ A+ ++ ++    ++PN +
Sbjct: 395 KSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVV 454

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV---Y 120
           T+T LI    K G MD A  +  +M EKG  +N +T S L+DG  +   ++ A      Y
Sbjct: 455 TYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEY 514

Query: 121 EEMCENNISPNIA---------------GRPTEAMQLYDSMLRNGIMPD 154
               ++  +P+IA               G+  EA   +  M  +G++PD
Sbjct: 515 SGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPD 563



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F  +    + P +  YN++I G        EA+  F+++    L+P+  T +I++ 
Sbjct: 297 AKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVR 356

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             C  G+M  AT     M + G   N   Y+ LID Y KS N+  A      M E  + P
Sbjct: 357 GLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEP 416

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           N+             G    AM +Y  M+  G+ P+ +  + L
Sbjct: 417 NVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTAL 459



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ + G+ P++ TYN ++  +   + +  A+  +  L    L PN + FT LID  C
Sbjct: 230 LFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLC 289

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           +  R+ +A  +F  M        V  Y+ LI G F+S   + A   ++E+    + P+
Sbjct: 290 QANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPD 347



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL +FG+L +    P +   N I+ G    + L    +LF+++    + P+ +T+  L
Sbjct: 123 DEALSVFGRLREL---PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTL 179

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+A   +G +  A  ++ +M+ +    NVVTY+ +I    +   +  A  ++ EM E  +
Sbjct: 180 INACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGM 239

Query: 129 SPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            PN+                  A+  Y  +L+ G++P+ ++ +TL D
Sbjct: 240 RPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLID 286



 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK---- 59
           K   +DAA  L  ++ ++G+  + IT + ++ G C  NR+ +AV+   + +  +      
Sbjct: 465 KNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNP 524

Query: 60  --PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
              NS+T+  LI     +G+ ++A   FS M + G   +  TY+ +I G      + +A 
Sbjct: 525 SIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAM 584

Query: 118 DVYEEMCENNISPN 131
            +Y +M +  + P 
Sbjct: 585 MLYADMVKVGVKPT 598



 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 37/75 (49%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           +TY T+I G     + +EA   F  +    + P+  T+T++I   C  G + +A M+++ 
Sbjct: 530 VTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYAD 589

Query: 88  MLEKGPKANVVTYSC 102
           M++ G K       C
Sbjct: 590 MVKVGVKPTKCAMVC 604


>gi|302780829|ref|XP_002972189.1| hypothetical protein SELMODRAFT_412752 [Selaginella moellendorffii]
 gi|300160488|gb|EFJ27106.1| hypothetical protein SELMODRAFT_412752 [Selaginella moellendorffii]
          Length = 529

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 80/140 (57%), Gaps = 2/140 (1%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF  +  +   PDI+T++T++ GYC+   +D+A +L E++      P+  T+T L+D
Sbjct: 2   ARTLFNDMLKQAALPDIVTFSTLVEGYCNAGLVDDAERLLEEIIASDCSPDVYTYTSLVD 61

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC--ENNI 128
           +FCK  RM +A  +  +M ++G + NVVTY+ LID + ++     A+ + EEM    N++
Sbjct: 62  SFCKVKRMVEAHRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGINNDV 121

Query: 129 SPNIAGRPTEAMQLYDSMLR 148
            PN+    +  +  +  + R
Sbjct: 122 QPNVQELASVGLGTWKRLAR 141



 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 48/82 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A +L  ++      PD+ TY +++  +C + R+ EA ++ +++     +PN +T+T 
Sbjct: 34  VDDAERLLEEIIASDCSPDVYTYTSLVDSFCKVKRMVEAHRVLKRMAKRGCQPNVVTYTA 93

Query: 68  LIDAFCKEGRMDDATMMFSKML 89
           LIDAFC+ G+   A  +  +M+
Sbjct: 94  LIDAFCRAGKPTVAYKLLEEMV 115


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 77/119 (64%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A++LF +L    ++ DI ++N +I G C   +L+ A +LFEKL+   L+P+ +T+ I+I+
Sbjct: 431 AMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMIN 490

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            FCK G++D+A ++F  M E G   N++TYS L+ G++K+  ++    +  +M + ++S
Sbjct: 491 GFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVS 549



 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 18/180 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  H      L+ ++   GL P+  T N +I   C++NR+ E +     +      P+
Sbjct: 101 LAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPD 160

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LI   C E R+ +AT +F +M + G   NVVTY  LI G  ++ N+  A  +++
Sbjct: 161 VVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQ 220

Query: 122 EMCEN------NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM         N  PNI             G+  EA +L++ M+  G+ PD +  S L D
Sbjct: 221 EMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALID 280



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 23/144 (15%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A +LF ++ D+G+ PD++T++ +I   C    + EA +  E +    + P+  TFT LI+
Sbjct: 256 AKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIE 315

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC  G +D A  +F  M  KG + +V++Y+ LI GY K+ N++                
Sbjct: 316 GFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVE---------------- 359

Query: 131 NIAGRPTEAMQLYDSMLRNGIMPD 154
                  EAM+LY+ MLR G  PD
Sbjct: 360 -------EAMKLYNEMLRVGKWPD 376



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 47/201 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD+A +LF  +  +G EPD+I+Y  +I GYC    ++EA++L+ ++  V   P+  TF +
Sbjct: 323 LDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCV 382

Query: 68  LI-----------------------------------DAFCKEGRMDDATMMFSKMLEKG 92
           L+                                   D  CK G + +A  +F+++    
Sbjct: 383 LLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYN 442

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAM 140
            K ++ +++CLIDG  K++ +++A++++E++ +  + P++             G+   A 
Sbjct: 443 MKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNAN 502

Query: 141 QLYDSMLRNGIMPDGLLLSTL 161
            L+  M  NG  P+ L  S L
Sbjct: 503 ILFQMMEENGCTPNLLTYSAL 523



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L+ A +LF +L+  GL+PD++TY  +I G+C   ++D A  LF+ +      PN
Sbjct: 457 LCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPN 516

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ L+  F K  ++++   +  KM++K        Y+ + D   K +  +   D+ +
Sbjct: 517 LLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKCREWLDILQ 576

Query: 122 E 122
            
Sbjct: 577 R 577


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 70/121 (57%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL   +  RG+ P   TY+++I G C + R+DEA ++FE++    L PN   +T LI 
Sbjct: 660 AFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIG 719

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK G+MD    +  +M   G + N +TY+ +IDGY K  NMK A ++  EM  N I+P
Sbjct: 720 GHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAP 779

Query: 131 N 131
           +
Sbjct: 780 D 780



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A+K F  L    +E   + YN +I  YC +  + EA +L + +    + P   T++ 
Sbjct: 622 IEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSS 681

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C  GR+D+A  +F +M  +G   NV  Y+ LI G+ K   M     +  EM  N 
Sbjct: 682 LIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNG 741

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I PN              G   EA +L + M+RNGI PD +  + L
Sbjct: 742 IRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNAL 787



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 91/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++   ++  Q+ ++GL  D I+YNT+I G C   +++EA +L E++   + +P+
Sbjct: 511 LCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPD 570

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-- 119
           + T+  L+      G++DD   +  +  E G   NV TY+ L++GY K+  ++ A     
Sbjct: 571 TYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFK 630

Query: 120 ---YEEMCENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              YE++  +++  NI        G  TEA +L D+M   GI+P     S+L
Sbjct: 631 NLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSL 682



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 13/172 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   L  + ++F  L  +G+ PD+ T+ T I  +C   R+ +AV LF K+  + + PN
Sbjct: 231 LVKANELHKSYEVF-DLACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPN 289

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID   K GR ++A     +M+      +VVTY  LI G  K +  + A +V  
Sbjct: 290 VVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLV 349

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM     +PN              G   EA+++ D M   G+ P+ +  +TL
Sbjct: 350 EMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTL 401



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 64/106 (60%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A ++F ++ + GL P++  Y  +I G+C L ++D    +  +++   ++PN IT+TI
Sbjct: 692 VDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTI 751

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
           +ID +CK G M +A  + ++M+  G   + VTY+ L  GY K + +
Sbjct: 752 MIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCKEREL 797



 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 3/170 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + AL+   ++    + P ++TY  +I G   L   +EA ++  ++  +   PN
Sbjct: 300 LFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPN 359

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + F  LID +C++G M +A  +  +M  KG K N VT++ L+ G+ +S  M+ A  V  
Sbjct: 360 EVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLV 419

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
            +  + +S N+      +  ++  M R+G +    +++ L   N++ S S
Sbjct: 420 YILSSGLSVNM---DVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDS 466



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKP 60
           L++     +ALK+  +L    +         ++ G C      EA++L+ KL  V+ L  
Sbjct: 440 LMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAA 499

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N++T   L+   C+ G M++   +  +MLEKG   + ++Y+ LI G  K   ++ AF + 
Sbjct: 500 NTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLK 559

Query: 121 EEMCENNISPN 131
           EEM +    P+
Sbjct: 560 EEMVQQEFQPD 570



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 52/205 (25%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF-------------------- 50
           AL++  ++  +G++P+ +T+NT++ G+C  N++++A Q+                     
Sbjct: 379 ALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIH 438

Query: 51  ---------------EKLTCVQLKPNSITFTILIDAFCK-EGRMDDATMMFSKMLEKGPK 94
                           KL    ++ +    T L+   CK EG  +   + F     KG  
Sbjct: 439 RLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLA 498

Query: 95  ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNI-------AGRPTEAMQL 142
           AN VT + L+ G  +  NM+  F+V ++M E     + IS N         G+  EA +L
Sbjct: 499 ANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKL 558

Query: 143 YDSMLRNGIMPD----GLLLSTLAD 163
            + M++    PD      L+  LAD
Sbjct: 559 KEEMVQQEFQPDTYTYNFLMKGLAD 583


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +  A +LF  +  RG +PD++TYNT+I G C   +LDEAV L E++    + P 
Sbjct: 124 LWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPT 183

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T LID  CK  R+  A  +F KM E         YS L +   ++  +  A  VY 
Sbjct: 184 FVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVEASRVYS 243

Query: 122 EMCENNIS-------------PNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +MC  N+                + G   EA +L   M+   I PD    S L
Sbjct: 244 DMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSIL 296



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++  A+ +F ++  +G EPDI+ +N ++ G     ++ EA +LF  +     KP+ +
Sbjct: 91  KTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVV 150

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I   CK  ++D+A  +  +M ++      VTY+ LID   K   ++ A++V+E+M
Sbjct: 151 TYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKM 210

Query: 124 CENNIS---P---------NIAGRPTEAMQLYDSMLRNGI 151
            E   +   P           AG+  EA ++Y  M R  +
Sbjct: 211 AEGPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNV 250



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P++++YN II GYC    +++A+    ++  +   P    ++ ++ +FCK G +  A  +
Sbjct: 42  PNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDV 101

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT------- 137
           F++M  KG + ++V ++ L+ G ++++ +  A +++  M      P++    T       
Sbjct: 102 FAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCK 161

Query: 138 -----EAMQLYDSMLRNGIMPDGLLLSTLADY 164
                EA+ L + M +  + P  +  +TL D+
Sbjct: 162 WKKLDEAVFLLERMKQEDVSPTFVTYTTLIDH 193



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 25/181 (13%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+    L  A++L   + D+G  PD  +YN +I G+C+    +EA  LF+ +    +  N
Sbjct: 335 LLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLN 394

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML----EKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           + T+  +I  F K+     A M+F +M     +K P  N+ TY  LI    K+  ++ AF
Sbjct: 395 TWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAF 454

Query: 118 DVYEEMCENNISPNI------------AGRPTEAMQLYDSMLR---------NGIMPDGL 156
            +   M +    P++            AGR  +A +LY  M R         + I+ DG+
Sbjct: 455 KLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGI 514

Query: 157 L 157
           L
Sbjct: 515 L 515



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 66/129 (51%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +++ AL    ++ + G  P    Y++I+  +C    + +A+ +F ++     +P+ +
Sbjct: 56  KARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIV 115

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F +L+    +  ++ +A  +F  M  +G K +VVTY+ +I G  K + +  A  + E M
Sbjct: 116 NFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERM 175

Query: 124 CENNISPNI 132
            + ++SP  
Sbjct: 176 KQEDVSPTF 184



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 81/176 (46%), Gaps = 16/176 (9%)

Query: 2   LIKECHLDAALKLFGQL----TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
            IK+    +A  LF ++     D+   P++ TY  +I   C  ++++EA +L   +    
Sbjct: 405 FIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKG 464

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
             P+   + +L+    + GR+DDA  ++ +M     +  V + + L+DG  +  ++  A 
Sbjct: 465 FVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAK 524

Query: 118 DVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           D  ++M +  I P+              G+  +A +L + ++R+G  P+   L  L
Sbjct: 525 DFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLRQL 580



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 63/121 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A KL  ++  + + PD   Y+ +I G C   R  EA ++F+++    + P  +T+  L++
Sbjct: 274 AAKLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLE 333

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
                 ++ DA  +   ML++G   +  +Y+ +I G+  + +   A+ ++++M ++ I  
Sbjct: 334 GLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVL 393

Query: 131 N 131
           N
Sbjct: 394 N 394



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 19/140 (13%)

Query: 29  TYNTIICGYCSLNRLD----EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           TY+ ++ G   L+++D    EA +L  ++   ++ P+   ++ILI+  CK  R  +A  M
Sbjct: 256 TYSLVVLG---LSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEM 312

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
           F +M  +G    VVTY+ L++G   +  ++ A ++   M +    P+             
Sbjct: 313 FQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCA 372

Query: 134 -GRPTEAMQLYDSMLRNGIM 152
            G   EA  L+  M+++GI+
Sbjct: 373 NGDTNEAYCLFQDMIKDGIV 392



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 21/126 (16%)

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSA 116
           L PN+I +  LI   CK G + +A     +M +   P  NVV+Y+ +IDGY K++N++ A
Sbjct: 6   LFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCAP--NVVSYNIIIDGYCKARNIEKA 63

Query: 117 FDVYEEMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
                EM E    P               G  ++AM ++  M   G  PD      + ++
Sbjct: 64  LAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPD------IVNF 117

Query: 165 NLQSSG 170
           N+  SG
Sbjct: 118 NVLLSG 123



 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 49/103 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           +++   +D A     Q+TD G+ PD  TY+ ++ G C   + D+A +L E+L     +P 
Sbjct: 514 ILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPE 573

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           +     L+ A C +G    A   +  +   G +  +  ++ L+
Sbjct: 574 NQGLRQLLGALCAQGDFQGAYEFYCWLPSVGVEVTLGMHNTLV 616


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  +  A+KL  ++ DRG  PD++TYN ++ G C   RLDEA++    +     +PN I
Sbjct: 251 RDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVI 310

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  I++ + C  GR  DA  + + ML KG   +VVT++ LI+   +   +  A D+ E+M
Sbjct: 311 THNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM 370

Query: 124 CENNISPN-IAGRP-----------TEAMQLYDSMLRNGIMPDGLLLSTL 161
            ++   PN ++  P             A++  + M+  G  PD +  +T+
Sbjct: 371 PKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  L  A+ +  ++   G +P+ ++YN ++ G+C   ++D A++  E++      P+
Sbjct: 354 LCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  ++ A CK+G+++DA  + +++  KG    ++TY+ +IDG  K+     A  + +
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLD 473

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM   ++ P+              G+  EA++ +    R G+ P+ +  +++
Sbjct: 474 EMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSI 525



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ AL +  +++   + PD++TYNTI+   C   +L +A+++ +++      P+ I
Sbjct: 184 KAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI+A C++  +  A  +  +M ++G   +VVTY+ L++G  K   +  A     +M
Sbjct: 241 TYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
             +   PN+             GR  +A +L   MLR G  P  +  + L ++
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353



 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ A+++  QL+ +G  P +ITYNT+I G     +  +A++L +++    LKP+
Sbjct: 424 LCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPD 483

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT++ L+    +EG++D+A   F +    G + N VT++ ++ G  K++    A D   
Sbjct: 484 TITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLV 543

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIM 152
            M      P               G   EA++L + +   G+M
Sbjct: 544 YMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  LD A+K    +   G +P++IT+N I+   CS  R  +A +L   +      P+ +
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF ILI+  C++G +  A  +  KM + G + N ++Y+ L+ G+ K + M  A +  E M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 124 CENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                 P+I             G+  +A+++ + +   G  P  +  +T+ D
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 15/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   L+   K    +   G  PDII   T+I G+C + +  +A ++ E L      P+
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD 171

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+ ++I  +CK G +++A  +  +M       +VVTY+ ++     S  +K A +V +
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLAD 163
            M + +  P++                 +AM+L D M   G  PD +  + L +
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVN 282



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A+++  ++  R   PD+ITY  +I   C  + + +A++L +++      P+ +T+ +
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNV 279

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L++  CKEGR+D+A    + M   G + NV+T++ ++     +     A  +  +M    
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
            SP++             G    A+ + + M ++G  P+ L
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSL 380



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 15/140 (10%)

Query: 43  LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102
           L+E  +  E +      P+ I  T LI  FC+ G+   A  +   +   G   +V+TY+ 
Sbjct: 118 LEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNV 177

Query: 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
           +I GY K+  + +A  V + M   ++SP++            +G+  +AM++ D ML+  
Sbjct: 178 MISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 151 IMPDGLLLSTLADYNLQSSG 170
             PD +  + L +   + SG
Sbjct: 235 CYPDVITYTILIEATCRDSG 254


>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 511

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 3/132 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           LI E  +D A  L  ++   G   PD+++Y  II GYC L +++E   LF+++      P
Sbjct: 224 LINE--VDRARSLLREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAP 281

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N+ TF  LID F K G M  A  ++SKML +G   +V T++ LI+G+F+ + +  A D++
Sbjct: 282 NTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMW 341

Query: 121 EEMCENNISPNI 132
            +M E NI  ++
Sbjct: 342 HKMNEKNIGASL 353



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 76/128 (59%), Gaps = 3/128 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITF 65
           +D A KL   L   G  PD+ITYNT+I G C +N +D A  L  ++ C+  +  P+ +++
Sbjct: 193 IDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREV-CLNGEFAPDVVSY 251

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           T++I  +CK  +M++ +++F +M+  G   N  T++ LIDG+ K  +M SA  +Y +M  
Sbjct: 252 TMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLV 311

Query: 126 NNISPNIA 133
               P++A
Sbjct: 312 QGCLPDVA 319



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +LI++  +  A+ LF +L     +P   T N +I G C +  +DEA +L + L      P
Sbjct: 151 VLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLP 210

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDV 119
           + IT+  LI   C    +D A  +  ++   G  A +VV+Y+ +I GY K + M+    +
Sbjct: 211 DVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLL 270

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
           ++EM  +  +PN              G    A+ LY  ML  G +PD    ++L + + +
Sbjct: 271 FDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFR 330



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + +AL L+ ++  +G  PD+ T+ ++I G+  + ++ +A+ ++ K+    +  +  T+++
Sbjct: 299 MASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSV 358

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+   C   R+  A  +   + E         Y+ +IDGY KS N+  A  +  EM  N 
Sbjct: 359 LVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNR 418

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
             P+            + GR  EA+  +D ML  G  PD + ++ L
Sbjct: 419 CKPDKLTFTILIIGHCMKGRMPEAIGFFDKMLAVGCAPDEITVNNL 464



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L  A  +   L +  + P    YN +I GYC    +DEA ++  ++   + KP+ +TFTI
Sbjct: 369 LHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTI 428

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           LI   C +GRM +A   F KML  G   + +T + L     K+     A  V E + +N
Sbjct: 429 LIIGHCMKGRMPEAIGFFDKMLAVGCAPDEITVNNLRSCLLKAGMPGEAARVKEVLAQN 487



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 77/159 (48%), Gaps = 14/159 (8%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +++ H   A+ ++ ++ ++ +   + TY+ ++ G C+ NRL +A  +   L    + P  
Sbjct: 331 VRQVH--QAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQP 388

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             +  +ID +CK G +D+A  + ++M     K + +T++ LI G+     M  A   +++
Sbjct: 389 FIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGFFDK 448

Query: 123 MCENNISPN------------IAGRPTEAMQLYDSMLRN 149
           M     +P+             AG P EA ++ + + +N
Sbjct: 449 MLAVGCAPDEITVNNLRSCLLKAGMPGEAARVKEVLAQN 487



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD + +L   +    +  + + YN +       N++ +AV LF +L  ++ KP + T  I
Sbjct: 123 LDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNI 182

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G +D+A  +   +   G   +V+TY+ LI G      +  A  +  E+C N 
Sbjct: 183 LIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNG 242

Query: 128 -ISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             +P++              +  E   L+D M+ +G  P+    + L D
Sbjct: 243 EFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALID 291


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  +D A  LF ++ ++G+ P I+  N+II   C +  +D+A  + +K+    + P+
Sbjct: 58  FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 117

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++++ID  CK   MD A  +  +M+E G + N +TY+ LI GY  S     +  V++
Sbjct: 118 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 177

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    + P +             GR  EA  ++DSM+  G  PD +  ST+
Sbjct: 178 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTM 229



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 74/131 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +     +   +   G  P+++T+N+++ GYC +  ++EA  L + +  + ++PN
Sbjct: 376 LCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 435

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+D +CK GR+DDA  +F  ML KG K   V YS ++ G F+++   +A  ++ 
Sbjct: 436 CYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFH 495

Query: 122 EMCENNISPNI 132
           EM E+  + +I
Sbjct: 496 EMIESGTTVSI 506



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++  Q+ + G  P+ ITYN++I GY      +E+V++F++++   + P 
Sbjct: 128 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 187

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDV 119
                  I A  K GR ++A  +F  M+ KGPK ++++YS ++ GY  + +  +    ++
Sbjct: 188 VDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNI 247

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  M    I+PN              G   +AM +++ M   G++PD +  +T+
Sbjct: 248 FNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 301



 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 48/202 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT--- 64
           +D A+ +F  + ++G+ PD +T+ T+I   C + RLD+A+  F  +  + + P+      
Sbjct: 276 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGC 335

Query: 65  ---------------------------------FTILIDAFCKEGRMDDATMMFSKMLEK 91
                                            F+ +I+  CKEGR+ +   +   M++ 
Sbjct: 336 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 395

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G + NVVT++ L++GY    NM+ AF + + M    I PN              GR  +A
Sbjct: 396 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 455

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
           + ++  ML  G+ P  +L S +
Sbjct: 456 LTVFRDMLHKGVKPTSVLYSII 477



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  L   +   G+EP+   Y T++ GYC   R+D+A+ +F  +    +KP S+ ++
Sbjct: 416 NMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 475

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++    +  R   A  MF +M+E G   ++ TY  ++ G  ++     A  + E++   
Sbjct: 476 IILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAM 535

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+  +I             GR  EA +L+D++   G++P+
Sbjct: 536 NVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPN 575



 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  +G+ P+   +N +I  Y     +D+A+ +FE +    + P+++TF  +I + C
Sbjct: 247 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 306

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--- 130
           + GR+DDA   F+ M++ G   +   Y CLI G      +  A ++  EM   +I P   
Sbjct: 307 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 366

Query: 131 --------NI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   N+   GR  E   + D M++ G  P+ +  ++L +
Sbjct: 367 KYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLME 409



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L + G+L   GL PD  +Y ++I G+     +D+A  LF ++    + P  +    +
Sbjct: 31  DLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSI 89

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   CK   MD A  +  KM++ G   ++ TYS +IDG  KS+ M  A  V E+M E   
Sbjct: 90  IKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGT 149

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMP 153
            PN            I+G   E+++++  M   G++P
Sbjct: 150 RPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 186



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 14/169 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--LDEAVQLFEKLTCVQLK 59
           L K    + A  +F  +  +G +PDII+Y+T++ GY +     L +   +F  +    + 
Sbjct: 198 LFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIA 257

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN   F ILI+A+ + G MD A ++F  M  KG   + VT++ +I    +   +  A   
Sbjct: 258 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 317

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           +  M +  + P+ A            G   +A +L   M+   I P G+
Sbjct: 318 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 366



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA K+F ++ + G    I TY  ++ G C  N  DEA  L EKL  + +K + ITF I+I
Sbjct: 489 AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVI 548

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            A  K GR  +A  +F  +   G   N+ TYS +I    K ++ + A +++
Sbjct: 549 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 599



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITY-NTIICGYCSLNRLDEAVQLFEKLTCV 56
           LI+ C     L  A +L  ++ ++ + P  + Y ++II   C   R+ E   + + +   
Sbjct: 336 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 395

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             +PN +TF  L++ +C  G M++A  +   M   G + N   Y  L+DGY K+  +  A
Sbjct: 396 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 455

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
             V+ +M    + P              A R T A +++  M+ +G
Sbjct: 456 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 501



 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 58/121 (47%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  +L    ++ DIIT+N +I     + R  EA +LF+ ++   L PN  T++++
Sbjct: 523 DEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMM 582

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    KE   ++A  +F  + + G  ++    + ++        +  A +    + ENN+
Sbjct: 583 ITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNL 642

Query: 129 S 129
           +
Sbjct: 643 T 643



 Score = 38.5 bits (88), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 14/126 (11%)

Query: 51  EKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109
           ++  C +  P +I T+ ILID + +  R D    +  ++L+ G   +  +YS LI G+ K
Sbjct: 2   DRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVK 60

Query: 110 SQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLL 157
              +  A  ++ EM E  + P I                 +A  +   M+ +GI PD   
Sbjct: 61  DGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFT 120

Query: 158 LSTLAD 163
            S + D
Sbjct: 121 YSLIID 126


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  ++ ALK+F ++   G+ P+++TY TI+ G+ S   L  A ++F +++     P+
Sbjct: 168 LCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPD 227

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T+L+  +CK+GR+ DA  +   M   G + N VTY  +ID Y K +    A ++ +
Sbjct: 228 ATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLID 287

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +M +    P+              G+   A  L+  ML    +PD  ++STL  +
Sbjct: 288 DMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHW 342



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ P++ ++N +I   C  N ++ A+++F+++  + + PN +T+T ++  F   G + +A
Sbjct: 153 GVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNA 212

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133
             +FS++ +KG   +  TY+ L+ GY K   +  A  V + M  N + PN          
Sbjct: 213 EKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDA 272

Query: 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                +  EA  L D ML    +P   L   + D
Sbjct: 273 YCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVID 306



 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L KE  +  A KLF +  ++G  P ++TYNT+I G C    L+EA +L++ +   + +P
Sbjct: 342 WLCKEGKVWEARKLFDEF-EQGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRP 400

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
           N+ T+ +LI  F K G + +   +  +ML+ G   N  TY+ LI+G  +S
Sbjct: 401 NAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQES 450



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L ++  ++ A  L+ ++ ++   PD    +T+I   C   ++ EA +LF++     + P
Sbjct: 307 VLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQGTI-P 365

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T+  LI   C+ G +++A  ++  M+EK  + N  TY+ LI G+ K+  +K    + 
Sbjct: 366 SLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRIL 425

Query: 121 EEMCENNISPN 131
           EEM +N   PN
Sbjct: 426 EEMLDNGCLPN 436



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 47/215 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A+K+   +   G+EP+ +TY  +I  YC   +  EA  L + +   +  P+S 
Sbjct: 240 KQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSST 299

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEK-------------------------------- 91
               +ID  C++G++++A  ++ +MLEK                                
Sbjct: 300 LCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEF 359

Query: 92  --GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPT 137
             G   +++TY+ LI G  +   +  A  ++++M E    PN             AG   
Sbjct: 360 EQGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVK 419

Query: 138 EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
           E +++ + ML NG +P+    + L +  LQ SG +
Sbjct: 420 EGVRILEEMLDNGCLPNKSTYTLLIE-GLQESGME 453



 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 40/79 (50%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L+ A +L+  + ++   P+  TYN +I G+     + E V++ E++      PN  T+T+
Sbjct: 383 LNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTL 442

Query: 68  LIDAFCKEGRMDDATMMFS 86
           LI+   + G   D   + S
Sbjct: 443 LIEGLQESGMEGDVDKVMS 461


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----TCVQLKPNSI 63
           +  AL+L  ++ + G  PD +T N ++ G C +  +    ++  +L     C+   PN +
Sbjct: 244 VQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCM---PNVV 300

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T +I  +CK GRM+DA  +++ M+  G   N VTY+ LI+GY K+ NM SA  VY++M
Sbjct: 301 TYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQM 360

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLST-LADYNLQ 167
                 P++    T    L D   R G + D +   T ++ Y +Q
Sbjct: 361 ILRRCPPDVVTFST----LIDGYCRCGQLDDAMRTWTEMSQYQIQ 401



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 13/152 (8%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+++TY ++I GYC   R+++A+ ++  +      PN++T+ +LI+ + K G M  A  +
Sbjct: 297 PNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAV 356

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------ 132
           + +M+ +    +VVT+S LIDGY +   +  A   + EM +  I PN             
Sbjct: 357 YQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCK 416

Query: 133 AGRPTEAMQLYDSM-LRNGIMPDGLLLSTLAD 163
             R  EA++    + +R  I P   + + + D
Sbjct: 417 QNRSAEALRFLKELNMRTDIAPRAFICNPVID 448



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 36/164 (21%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  ++ +A+ ++ Q+  R   PD++T++T+I GYC   +LD+A++ + +++  Q++PN+ 
Sbjct: 346 KAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAH 405

Query: 64  TFTILI------------------------------------DAFCKEGRMDDATMMFSK 87
           TF+I+I                                    D  CK G++D+A ++  +
Sbjct: 406 TFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILME 465

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           M  KG + +  TY+ LI G+     +  A   + +M +   SP+
Sbjct: 466 MEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPD 509



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   ++ A+ ++  +   G  P+ +TYN +I GY     +  AV +++++   +  P+ +
Sbjct: 311 KSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVV 370

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           TF+ LID +C+ G++DDA   +++M +   + N  T+S +I  + K      A    +E+
Sbjct: 371 TFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKEL 430

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNG 150
              N+  +IA R      + D + + G
Sbjct: 431 ---NMRTDIAPRAFICNPVIDVLCKGG 454



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 76/205 (37%), Gaps = 49/205 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-LTCVQLKPNSITFT 66
           LDAA  L  +    G   +   YN ++  +    R+ +AV LFE  +      P+  +F 
Sbjct: 173 LDAAAALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFN 232

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKG--PKA----------------------------- 95
           + I   C+ G +  A  +  +M E G  P                               
Sbjct: 233 VAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRD 292

Query: 96  -----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTE 138
                NVVTY+ +I GY KS  M+ A  VY +M     +PN             AG    
Sbjct: 293 GVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGS 352

Query: 139 AMQLYDSMLRNGIMPDGLLLSTLAD 163
           A+ +Y  M+     PD +  STL D
Sbjct: 353 AVAVYQQMILRRCPPDVVTFSTLID 377



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 37/148 (25%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-----------C 55
            LD A++ + +++   ++P+  T++ II  +C  NR  EA++  ++L            C
Sbjct: 384 QLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFIC 443

Query: 56  VQL-------------------------KPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
             +                         +P+  T+TILI   C +GR+ +A   F+KM++
Sbjct: 444 NPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVD 503

Query: 91  KGPKANVVTYSCLIDGYFKSQNMKSAFD 118
            G   + +T +  I    K+  M S  D
Sbjct: 504 TGCSPDSITVNSFIGCLLKA-GMPSEVD 530



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS-LNRLDEAVQLFEKLTCVQLK 59
           ML +      ALKLF Q+TD+        + + + G C+    LD A  L  K       
Sbjct: 130 MLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAALLSKAPQFGCC 189

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFD 118
             +  +  L+++F   GR+ DA  +F   ++ G    +V +++  I G  +  +++ A +
Sbjct: 190 VEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALE 249

Query: 119 VYEEMCENNISPN 131
           + E M E   SP+
Sbjct: 250 LVERMAEFGCSPD 262



 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L K   +D A  +  ++  +G  PD  TY  +I G+C   R+ EA+  F K+      P
Sbjct: 449 VLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSP 508

Query: 61  NSITFTILIDAFCKEG 76
           +SIT    I    K G
Sbjct: 509 DSITVNSFIGCLLKAG 524


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ AL +F  +   G+EP++  YN II G C   R+DEA+ LF+++   ++ P+ +T+ 
Sbjct: 232 QVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYN 291

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           ILID  CK G++  +  +  +M   G   +++TY+ L+    K+ ++  A  + +E+ + 
Sbjct: 292 ILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQ 351

Query: 127 NISPNIAGRPTEAMQLYDSMLRNGIMPDGLLL 158
            I PN+    T    L D + ++G + D  ++
Sbjct: 352 GIQPNVCTYTT----LIDGLCKDGRLEDAYVI 379



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 6   CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
           C +         L    +  D++ Y+TII   C    + +A +L+ ++    + PN  TF
Sbjct: 126 CKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTF 185

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
           +IL+DA CK+ +   A  + + M++KG K NVVTY  ++DGY     +  A +++  M +
Sbjct: 186 SILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQ 245

Query: 126 NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             + PN+              R  EAM L+  M    I PD +  + L D
Sbjct: 246 EGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILID 295



 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 13/181 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+ LF ++  + + PD++TYN +I G C L ++  +++L +++  +    +
Sbjct: 262 LCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVD 321

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  L+ A CK   +D A  +  ++ ++G + NV TY+ LIDG  K   ++ A+ +++
Sbjct: 322 IITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQ 381

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           E+        +             G   EA+ L   M  N  +PD +   T+  Y L   
Sbjct: 382 EILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETII-YALSEK 440

Query: 170 G 170
           G
Sbjct: 441 G 441



 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 71/113 (62%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ L   +  +G++P+++TY  I+ GYC +N++++A+ +F  +    ++PN   + I+I+
Sbjct: 201 AMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIIN 260

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
             CK+ R+D+A  +F +M  K    +VVTY+ LIDG  K   + ++ ++ +EM
Sbjct: 261 GLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEM 313



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K  H   A+ LF QL   G++P I+T   ++  YC    +     +  K+  +  +PN
Sbjct: 20  LVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPN 79

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           SITFT LI   C  G+  +A +    ++  G K + V+Y+ L++G  K    ++A  +  
Sbjct: 80  SITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLR 139

Query: 122 EMCENN--------ISPNIAGR-PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +   N         I     G+  T+A +LY  M+  GI P+    S L D
Sbjct: 140 KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVD 190



 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 75/156 (48%), Gaps = 15/156 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL     +   G + D ++Y  ++ G C +     A+Q+  K     +  + + ++ +ID
Sbjct: 99  ALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRK---TWVNADVVMYSTIID 155

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + CK   + DA  ++S+M+ KG   NV T+S L+D   K +  K A ++   M +  + P
Sbjct: 156 SLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKP 215

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+              +  +A+ +++ M++ G+ P+
Sbjct: 216 NVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPN 251



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 23/130 (17%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P I+ +N I+     +N    A+ LF +L    +KP+ +T TIL++ +C  G +     +
Sbjct: 8   PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSI 67

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144
            +K+L+ G + N +T++ LI G                MC N       G+  EA+  +D
Sbjct: 68  LTKILKMGYEPNSITFTTLIKG----------------MCLN-------GQAYEALLFHD 104

Query: 145 SMLRNGIMPD 154
            ++ +G   D
Sbjct: 105 HVVAHGFKLD 114



 Score = 42.4 bits (98), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  L+ A  +F ++   G    + TYN +I G C     DEA+ L  ++      P+
Sbjct: 367 LCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPD 426

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG------PKANVVTYSCLIDGY 107
           ++++  +I A  ++G       +   M+ +G       K N+ T + L D +
Sbjct: 427 AVSYETIIYALSEKGETVKTNKLLCAMIVRGLSKRLKKKVNMTTIADLNDKW 478


>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 67/124 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A + +  +  RG+ PD++TYNT+I GYC    ++EA Q F ++    + P  I++T
Sbjct: 274 RLETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYT 333

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  +    R DDA  +F +M   G K N +TYS L+ G   ++ +  A  +  EM   
Sbjct: 334 TMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTR 393

Query: 127 NISP 130
           + +P
Sbjct: 394 HFAP 397



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 62/121 (51%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F  + + G+EP   TYN ++ G+    RL+ A + +E +    + P+ +T+  +I+
Sbjct: 243 AKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMIN 302

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+   M++A   F++M  K     V++Y+ +I GY        A  ++EEM      P
Sbjct: 303 GYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKP 362

Query: 131 N 131
           N
Sbjct: 363 N 363



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+K+F ++ + G+E  + +Y+ +        R   A + F  +    ++P   T+ +++ 
Sbjct: 208 AVKIFQKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLW 267

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F    R++ A   +  M  +G   +VVTY+ +I+GY + + M+ A   + EM   NI+P
Sbjct: 268 GFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAP 327

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +              R  +A++L++ M   G  P+ +  STL
Sbjct: 328 TVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTL 370



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 26/191 (13%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPN 61
           K   LDAA+ +   +    +  +   Y  +I   C     D+AV+L E L   +  L+P 
Sbjct: 412 KHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQ 471

Query: 62  SI------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           S        + ++I   C  G+   A   F ++L+KG + + V ++ LI G+ K  N   
Sbjct: 472 STLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQ-DEVAFNNLIRGHAKEGNPDL 530

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLL----- 158
           AF++ + M    +S +              G P +A    DSM+ NG  PD  L      
Sbjct: 531 AFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVME 590

Query: 159 STLADYNLQSS 169
           S  AD  +Q++
Sbjct: 591 SLFADGRVQTA 601



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   L+ A  +   + ++G++ D   +  +I  Y     + EAV++F+K+  + ++ 
Sbjct: 163 ILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVER 222

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  ++  L     + GR   A   F+ ML +G +    TY+ ++ G+F S  +++A   Y
Sbjct: 223 SVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFY 282

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           E+M    ISP++    T            EA Q +  M    I P  +  +T+
Sbjct: 283 EDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTM 335



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 9   DAALKLFGQLTDR--------GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           D A+KL   L ++         LE +   YN II   C+  +  +A   F +L    ++ 
Sbjct: 452 DQAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQ- 510

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + F  LI    KEG  D A  M   M  +G   +  +Y  LI  Y        A    
Sbjct: 511 DEVAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTAL 570

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           + M EN  SP+ A            GR   A ++ +SML  GI
Sbjct: 571 DSMIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLDKGI 613



 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 9/150 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE + D A ++   +  RG+  D  +Y  +I  Y S     +A    + +      P+S 
Sbjct: 524 KEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSA 583

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  ++++   +GR+  A+ + + ML+KG   N+   + +++  F   + + A      +
Sbjct: 584 LFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALGRINLL 643

Query: 124 CENNISPNI---------AGRPTEAMQLYD 144
              N  P+           G+ T A +L D
Sbjct: 644 MNCNCPPDFNSLLSVLCEKGKTTSAFKLLD 673


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L  Q+  RG+  DI+T  T++ G   + +  EA ++FE +  + L PN
Sbjct: 401 LFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPN 460

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ L+D +CK G+M+ A ++  KM ++    NV+T+S +I+GY K   +  A DV  
Sbjct: 461 CVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLR 520

Query: 122 EMCENNISPN 131
           EM + N+ PN
Sbjct: 521 EMVQRNVMPN 530



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 12/155 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           + L+P ++TY T+I  YC    ++E+  L++K+    + P+ +T + ++  FC+ G++ +
Sbjct: 315 KNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTE 374

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A ++F +M E G   N V+Y+ +I+  FKS  +  AF++  +M    IS +I        
Sbjct: 375 AAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMD 434

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                G+  EA ++++++L+  + P+ +  S L D
Sbjct: 435 GLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLD 469



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A ++F  +    L P+ +TY+ ++ GYC L +++ A  + +K+    + PN
Sbjct: 436 LFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPN 495

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF+ +I+ + K+G +  A  +  +M+++    N + Y+ LIDGYFK+     A D  +
Sbjct: 496 VITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCK 555

Query: 122 EMC-----ENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      E+N+  +I        GR  EA  L   M   GI PD +  ++L D
Sbjct: 556 EMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLID 609



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 78/129 (60%), Gaps = 5/129 (3%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E H      L+ ++   G+ PD++T ++I+ G+C   +L EA  LF ++  + L PN 
Sbjct: 337 VEESH-----SLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNH 391

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  +I++  K GR+ +A  + S+M+ +G   ++VT + ++DG FK    K A +V+E 
Sbjct: 392 VSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFET 451

Query: 123 MCENNISPN 131
           + + N++PN
Sbjct: 452 ILKLNLAPN 460



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A+ +  ++  R + P+ I Y  +I GY      D A    +++   +L+ +++
Sbjct: 508 KKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNV 567

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F IL++   + GRMD+A  +   M  KG   ++V Y+ LIDGYFK  N  +A  + +EM
Sbjct: 568 IFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEM 627

Query: 124 CENNISPNIAG 134
            E NI  ++  
Sbjct: 628 KEKNIRFDVVA 638



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  A  LF ++ + GL+P+ ++Y TII       R+ EA  L  ++    +  + +
Sbjct: 368 RHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIV 427

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T ++D   K G+  +A  +F  +L+     N VTYS L+DGY K   M+ A  V ++M
Sbjct: 428 TCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKM 487

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + ++ PN+             G  ++A+ +   M++  +MP+ ++ + L D
Sbjct: 488 EKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILID 539



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 31/188 (16%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
            L D G+  D+I  NT+I GYC    + +A +L E      +K + +T+  L+ AFCK G
Sbjct: 222 NLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTG 281

Query: 77  RMDDATMMFSKMLE-------------------KGPKANVVTYSCLIDGYFKSQNMKSAF 117
            +  A  +F+++L                    K  +  +VTY+ LI  Y K   ++ + 
Sbjct: 282 DLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESH 341

Query: 118 DVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            +Y++M  N I P++             G+ TEA  L+  M   G+ P+ +  +T+ +  
Sbjct: 342 SLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSL 401

Query: 166 LQSSGSQE 173
            +S    E
Sbjct: 402 FKSGRVME 409



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ + GL PD ITYNTII  YC   + ++A+ +  ++    + PN++T+ ILI   CK G
Sbjct: 660 RMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTG 719

Query: 77  RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133
            ++ A     +ML        +T+  L+  Y +S+       ++E++  + +  ++    
Sbjct: 720 AVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYN 779

Query: 134 ---------GRPTEAMQLYDSMLRNGIMPD 154
                    G   +A  + D M++ GI  D
Sbjct: 780 TLITVFCRLGMTRKAKVVLDEMVKRGISAD 809



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P  IT+  ++  Y    + D+ +Q+ EKL    L+ +   +  LI  FC+ G    A ++
Sbjct: 738 PTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVV 797

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
             +M+++G  A++VTY+ LI GY    +++ A   Y +M  + I+PNI 
Sbjct: 798 LDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNIT 846



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 31/185 (16%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D    L  ++  RGL  D IT N ++ GYC +  +  A  +   L    +  + I    
Sbjct: 178 VDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNT 237

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           LID +C+ G M  AT +         K ++VTY+ L+  + K+ ++  A  ++ E+    
Sbjct: 238 LIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFW 297

Query: 126 -----------------NNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL 156
                             N+ P +    T            E+  LY  M+ NGIMPD +
Sbjct: 298 KDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVV 357

Query: 157 LLSTL 161
             S++
Sbjct: 358 TCSSI 362



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +  AAL +  ++ ++ +  D++ YN +I G   L + D    +  ++  + L P+ I
Sbjct: 613 KEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPR-YVCSRMIELGLAPDCI 671

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +I+ +C +G+ +DA  + ++M   G   N VTY+ LI G  K+  ++ A    +EM
Sbjct: 672 TYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEM 731

Query: 124 CENNISP 130
                 P
Sbjct: 732 LVMEFVP 738



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ----LKPNS 62
           H++ ALK + Q+   G+ P+I TYNT++ G  +   ++E ++  EKL        L PN+
Sbjct: 825 HVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNA 884

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ IL+  + + G      ++  +M+ KG    + TY+ LI  Y KS  M  A ++  +
Sbjct: 885 ATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLND 944

Query: 123 MCENNISPN 131
           +      PN
Sbjct: 945 LLTKGRIPN 953



 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 22/174 (12%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L++  +L   GLE  +  YNT+I  +C L    +A  + +++    +  + +T+  L
Sbjct: 757 DKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNAL 816

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY----FKSQNMKSAFDVYEEMC 124
           I  +C    ++ A   +S+M   G   N+ TY+ L+ G        + M+    +  EM 
Sbjct: 817 IRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMN 876

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           E  + PN A            G   + + L+  M+  G +P      TL  YN+
Sbjct: 877 ERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVP------TLKTYNV 924



 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D +TYNT+I G+C    +D+   L  ++    L  +SIT  IL+  +C+ G +  A  + 
Sbjct: 161 DNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVM 220

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
             +++ G   +V+  + LIDGY ++  M  A ++ E    +++  +I 
Sbjct: 221 YNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIV 268



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 13/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A     ++  R LE   + ++ ++     + R+DEA  L   +    + P+ + +  L
Sbjct: 548 DVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASL 607

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID + KEG    A  +  +M EK  + +VV Y+ LI G  +       + V   M E  +
Sbjct: 608 IDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSRMIELGL 666

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +P+            I G+  +A+ + + M   GIMP+ +  + L
Sbjct: 667 APDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNIL 711



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL  ++ +RGL P+  TY+ ++ GY  +    + + L  ++      P   T+ +LI  +
Sbjct: 870 KLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDY 929

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            K G+M +A  + + +L KG   N  TY  L  G+ 
Sbjct: 930 AKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGWL 965



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  L   +  +G++PDI+ Y ++I GY        A+ + +++    ++ + + + 
Sbjct: 581 RMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYN 640

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI    + G+  D   + S+M+E G   + +TY+ +I+ Y      + A D+  EM   
Sbjct: 641 ALIKGLLRLGKY-DPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSY 699

Query: 127 NISPN 131
            I PN
Sbjct: 700 GIMPN 704



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 75/152 (49%), Gaps = 14/152 (9%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD+ + N ++   C +  LD A+        V +  +++T+  +I  FC++G +D  
Sbjct: 124 GVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDI--DNVTYNTVIWGFCQKGLVDQG 181

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             + S+M+++G   + +T + L+ GY +   ++ A  V   + +  ++ ++         
Sbjct: 182 FGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDG 241

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              AG  ++A +L ++  R+ +  D +  +TL
Sbjct: 242 YCEAGLMSQATELIENSWRSDVKIDIVTYNTL 273


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            ++   L+ AL+ FG +  +G  P ++TYNT+I G     R  EA  L +++     KPN
Sbjct: 474 FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPN 533

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+++L++  C+  ++D A  ++ + LEKG K +V  ++ +I G   S  ++ A  +Y 
Sbjct: 534 MITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYS 593

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
           EM +    PN+    T             A +++D +L+ G  PD
Sbjct: 594 EMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPD 638



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++   D A +L   + ++G  PD+ +Y T+I        + +A++LF+++    + P+  
Sbjct: 161 RKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVA 220

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + ILID F K+G + +A+ ++ ++L KGP    N+ +Y+ +I+G  K      +F+++ 
Sbjct: 221 CYNILIDGFFKKGDILNASEIWERLL-KGPSVYPNIPSYNVMINGLCKCGKFDESFEIWH 279

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
            M +N    ++            +G    A ++Y  M  NG+ PD ++ +T+ +  L+ +
Sbjct: 280 RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLR-A 338

Query: 170 GSQEHCI 176
           G  E C+
Sbjct: 339 GRIEECL 345



 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI+    D A   F      GL P++ TYN +I   C   + D+A +L   +      P+
Sbjct: 124 LIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPD 183

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++  LI++  K G M DA  +F +M E+G   +V  Y+ LIDG+FK  ++ +A +++E
Sbjct: 184 VFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWE 243

Query: 122 EMCEN-NISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + +  ++ PNI             G+  E+ +++  M +N    D    STL
Sbjct: 244 RLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTL 296



 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +L+ AL +  +  +   + D   Y+++I G C   RLDE   + +++T    KPN
Sbjct: 404 LCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPN 463

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                 +I+ F +  +++DA   F  M+ KG    VVTY+ LI+G  K++    A+ + +
Sbjct: 464 PHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVK 523

Query: 122 EMCENNISPNI-----------AGRPTE-AMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM      PN+            G+  + A+ L+   L  G  PD + +  +  + L SS
Sbjct: 524 EMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPD-VKMHNIIIHGLCSS 582

Query: 170 GSQE 173
           G  E
Sbjct: 583 GKVE 586



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 87/173 (50%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A  L  ++  +G +P++ITY+ ++ G C   +LD A+ L+ +      KP+
Sbjct: 509 LSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPD 568

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
                I+I   C  G+++DA  ++S+M ++    N+VT++ L++G++K ++ + A  +++
Sbjct: 569 VKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWD 628

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            + +    P+I              R ++A+   +  +  G++P  +  + L 
Sbjct: 629 HILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 681



 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)

Query: 9   DAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D AL +F ++ +  G +P I +YN+++      N+ DEA   F     + L PN  T+ I
Sbjct: 95  DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNI 154

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C++ + D A  + + M E+G   +V +Y  LI+   K+  M  A  +++EM E  
Sbjct: 155 LIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERG 214

Query: 128 ISPNIA 133
           ++P++A
Sbjct: 215 VTPDVA 220



 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 40/174 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGY------------------------ 37
           L K  ++  ALKLF ++ +RG+ PD+  YN +I G+                        
Sbjct: 194 LAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYP 253

Query: 38  ------------CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
                       C   + DE+ +++ ++   +   +  T++ LI   C  G +D AT ++
Sbjct: 254 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVY 313

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM----CENNISPNIAGR 135
            +M E G   +VV Y+ +++GY ++  ++   ++++ M    C   +S NI  R
Sbjct: 314 KEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR 367



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 16/154 (10%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLF---EKLTCVQLKPNSI 63
           +LD A +++ ++ + G+ PD++ YNT++ GY    R++E ++L+   EK  C  +    +
Sbjct: 305 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTV----V 360

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           ++ ILI    +  ++D+A  ++  + EK   A+ +TY  L+ G  K+  +  A  + EE 
Sbjct: 361 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE- 419

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLL 157
            EN       GR       Y SM+ NG+  +G L
Sbjct: 420 AEN-------GRGDLDTFAYSSMI-NGLCREGRL 445



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +D A+ ++  L ++    D +TY  ++ G C    L++A+ + E+    +   +
Sbjct: 369 LFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLD 428

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +  ++ +I+  C+EGR+D+   +  +M + G K N    + +I+G+ ++  ++ A   + 
Sbjct: 429 TFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M      P +            A R +EA  L   ML  G  P+ +  S L
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLL 540



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D + +++ ++       D+ TY+T+I G C    LD A ++++++    + P+ + +  
Sbjct: 271 FDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNT 330

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++ + + GR+++   ++ K++EK     VV+Y+ LI G F++  +  A  ++E + E +
Sbjct: 331 MLNGYLRAGRIEECLELW-KVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKD 389



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A K++  +   G +PDII+YN  + G CS +R+ +AV          + P +IT+ I
Sbjct: 620 FERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNI 679

Query: 68  LIDAFCKEGRM 78
           L+ A    G +
Sbjct: 680 LVRAVLDNGAL 690


>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
 gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           L +A+KL   +   G+ PD++T+NT++ G+C + +L EA +LF ++  + L P ++T+ I
Sbjct: 289 LSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNI 348

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI+ + K G  +    +F +M     KA+++TY+ LI G  K    K A  +  E+ E  
Sbjct: 349 LINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKG 408

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMP 153
           + PN            +  +   A Q+Y SM+++   P
Sbjct: 409 LVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSFTP 446



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            LD A  +F ++   G  P++ +YNT+I GYC+   L  A++L   +    + P+ +TF 
Sbjct: 253 RLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFN 312

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            L++ FCK G++ +A+ +F +M         VTY+ LI+GY K+ N +    ++EEM   
Sbjct: 313 TLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRF 372

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +  +I             G+  +A  L   +   G++P+    S L
Sbjct: 373 QVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSAL 419



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 67/122 (54%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D AL  + ++    + P+  T N +IC  C L RLD+A  +FE++  +   PN  ++  L
Sbjct: 220 DIALAFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTL 279

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I  +C +G +  A  + S M + G   +VVT++ L++G+ K   ++ A  ++ EM   ++
Sbjct: 280 IAGYCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSL 339

Query: 129 SP 130
           SP
Sbjct: 340 SP 341



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 15  FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74
           F ++ D G  P + + N  +    + +R D A+  + ++   ++ PNS T  ++I A CK
Sbjct: 191 FCRMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSRIYPNSYTLNLVICACCK 250

Query: 75  EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-- 132
            GR+D A ++F +M   G   NV +Y+ LI GY     + SA  +   M +N + P++  
Sbjct: 251 LGRLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVPPDVVT 310

Query: 133 ----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
                      G+  EA +L+  M    + P      T   YN+  +G
Sbjct: 311 FNTLVNGFCKVGKLQEASKLFGEMKGMSLSP------TTVTYNILING 352



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +LF +++   ++ DI+TYN +I G C   +  +A  L  +L    L PN+ TF+ LI   
Sbjct: 364 RLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQ 423

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           C + + + A  ++  M++        T+  L+  + ++++   A  + EEM   + +P++
Sbjct: 424 CVQKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDYDGAVQLLEEMLNRHKAPDV 483

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGL 156
                        G+   AM L   +    ++P+G 
Sbjct: 484 NNLYELCAGLGQCGKVKTAMMLCSELEAQRLLPEGF 519



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A  L  +L ++GL P+  T++ +I G C   + + A Q+++ +      P 
Sbjct: 388 LCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSFTPC 447

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             TF +L+  FC+    D A  +  +ML +    +V     L  G  +   +K+A  +  
Sbjct: 448 DQTFRMLLSTFCENEDYDGAVQLLEEMLNRHKAPDVNNLYELCAGLGQCGKVKTAMMLCS 507

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
           E+    + P          + +D +   G++PD
Sbjct: 508 ELEAQRLLP----------EGFDKLKAFGLLPD 530


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 74/131 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +     +   +   G  P+++T+N+++ GYC +  ++EA  L + +  + ++PN
Sbjct: 538 LCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 597

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  L+D +CK GR+DDA  +F  ML KG K   V YS ++ G F+++   +A  ++ 
Sbjct: 598 CYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFH 657

Query: 122 EMCENNISPNI 132
           EM E+  + +I
Sbjct: 658 EMIESGTTVSI 668



 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  +D A  LF ++ ++G+ P I+  N+II   C +  +D+A  + +K+    + P+
Sbjct: 220 FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 279

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++++ID  CK   MD A  +  +M+E G + N +TY+ LI GY  S     +  V++
Sbjct: 280 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 339

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +M    + P +             GR  EA  ++DSM+  G  PD +  ST+
Sbjct: 340 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTM 391



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A ++  Q+ + G  P+ ITYN++I GY      +E+V++F++++   + P 
Sbjct: 290 LCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPT 349

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDV 119
                  I A  K GR ++A  +F  M+ KGPK ++++YS ++ GY  + +  +    ++
Sbjct: 350 VDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNI 409

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +  M    I+PN              G   +AM +++ M   G++PD +  +T+
Sbjct: 410 FNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 463



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 48/202 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT--- 64
           +D A+ +F  + ++G+ PD +T+ T+I   C + RLD+A+  F  +  + + P+      
Sbjct: 438 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGC 497

Query: 65  ---------------------------------FTILIDAFCKEGRMDDATMMFSKMLEK 91
                                            F+ +I+  CKEGR+ +   +   M++ 
Sbjct: 498 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 557

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEA 139
           G + NVVT++ L++GY    NM+ AF + + M    I PN              GR  +A
Sbjct: 558 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 617

Query: 140 MQLYDSMLRNGIMPDGLLLSTL 161
           + ++  ML  G+ P  +L S +
Sbjct: 618 LTVFRDMLHKGVKPTSVLYSII 639



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 12/160 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +++ A  L   +   G+EP+   Y T++ GYC   R+D+A+ +F  +    +KP S+ ++
Sbjct: 578 NMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 637

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           I++    +  R   A  MF +M+E G   ++ TY  ++ G  ++     A  + E++   
Sbjct: 638 IILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAM 697

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           N+  +I             GR  EA +L+D++   G++P+
Sbjct: 698 NVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPN 737



 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           +F  +  +G+ P+   +N +I  Y     +D+A+ +FE +    + P+++TF  +I + C
Sbjct: 409 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 468

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--- 130
           + GR+DDA   F+ M++ G   +   Y CLI G      +  A ++  EM   +I P   
Sbjct: 469 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 528

Query: 131 --------NI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   N+   GR  E   + D M++ G  P+ +  ++L +
Sbjct: 529 KYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLME 571



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D  L + G+L   GL PD  +Y ++I G+     +D+A  LF ++    + P  +    +
Sbjct: 193 DLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSI 251

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I   CK   MD A  +  KM++ G   ++ TYS +IDG  KS+ M  A  V E+M E   
Sbjct: 252 IKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGT 311

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMP 153
            PN            I+G   E+++++  M   G++P
Sbjct: 312 RPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIP 348



 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 14/169 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--LDEAVQLFEKLTCVQLK 59
           L K    + A  +F  +  +G +PDII+Y+T++ GY +     L +   +F  +    + 
Sbjct: 360 LFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIA 419

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN   F ILI+A+ + G MD A ++F  M  KG   + VT++ +I    +   +  A   
Sbjct: 420 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 479

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGL 156
           +  M +  + P+ A            G   +A +L   M+   I P G+
Sbjct: 480 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 528



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA K+F ++ + G    I TY  ++ G C  N  DEA  L EKL  + +K + ITF I+I
Sbjct: 651 AAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVI 710

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            A  K GR  +A  +F  +   G   N+ TYS +I    K ++ + A +++
Sbjct: 711 SAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 761



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 2   LIKEC----HLDAALKLFGQLTDRGLEPDIITY-NTIICGYCSLNRLDEAVQLFEKLTCV 56
           LI+ C     L  A +L  ++ ++ + P  + Y ++II   C   R+ E   + + +   
Sbjct: 498 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQT 557

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
             +PN +TF  L++ +C  G M++A  +   M   G + N   Y  L+DGY K+  +  A
Sbjct: 558 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 617

Query: 117 FDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNG 150
             V+ +M    + P              A R T A +++  M+ +G
Sbjct: 618 LTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 663



 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 58/121 (47%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  +L    ++ DIIT+N +I     + R  EA +LF+ ++   L PN  T++++
Sbjct: 685 DEANMLLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMM 744

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    KE   ++A  +F  + + G  ++    + ++        +  A +    + ENN+
Sbjct: 745 ITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNL 804

Query: 129 S 129
           +
Sbjct: 805 T 805



 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 46  AVQLFEKL---TCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
           A++LF+++    C +  P +I T+ ILID + +  R D    +  ++L+ G   +  +YS
Sbjct: 156 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS 215

Query: 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRN 149
            LI G+ K   +  A  ++ EM E  + P I                 +A  +   M+ +
Sbjct: 216 -LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDS 274

Query: 150 GIMPDGLLLSTLAD 163
           GI PD    S + D
Sbjct: 275 GIAPDLFTYSLIID 288


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 75/130 (57%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  A  L  Q+  RG+  DI+T  T++ G   + +  EA ++FE +  + L PN
Sbjct: 401 LFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPN 460

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ L+D +CK G+M+ A ++  KM ++    NV+T+S +I+GY K   +  A DV  
Sbjct: 461 CVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLR 520

Query: 122 EMCENNISPN 131
           EM + N+ PN
Sbjct: 521 EMVQRNVMPN 530



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 12/155 (7%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           + L+P ++TY T+I  YC    ++E+  L++K+    + P+ +T + ++  FC+ G++ +
Sbjct: 315 KNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTE 374

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------- 132
           A ++F +M E G   N V+Y+ +I+  FKS  +  AF++  +M    IS +I        
Sbjct: 375 AAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMD 434

Query: 133 ----AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                G+  EA ++++++L+  + P+ +  S L D
Sbjct: 435 GLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLD 469



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A ++F  +    L P+ +TY+ ++ GYC L +++ A  + +K+    + PN
Sbjct: 436 LFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPN 495

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ITF+ +I+ + K+G +  A  +  +M+++    N + Y+ LIDGYFK+     A D  +
Sbjct: 496 VITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCK 555

Query: 122 EMC-----ENNISPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM      E+N+  +I        GR  EA  L   M   GI PD +  ++L D
Sbjct: 556 EMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLID 609



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 78/129 (60%), Gaps = 5/129 (3%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           ++E H      L+ ++   G+ PD++T ++I+ G+C   +L EA  LF ++  + L PN 
Sbjct: 337 VEESH-----SLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNH 391

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +++  +I++  K GR+ +A  + S+M+ +G   ++VT + ++DG FK    K A +V+E 
Sbjct: 392 VSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFET 451

Query: 123 MCENNISPN 131
           + + N++PN
Sbjct: 452 ILKLNLAPN 460



 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  L  A+ +  ++  R + P+ I Y  +I GY      D A    +++   +L+ +++
Sbjct: 508 KKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNV 567

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F IL++   + GRMD+A  +   M  KG   ++V Y+ LIDGYFK  N  +A  + +EM
Sbjct: 568 IFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEM 627

Query: 124 CENNISPNIAG 134
            E NI  ++  
Sbjct: 628 KEKNIRFDVVA 638



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +   L  A  LF ++ + GL+P+ ++Y TII       R+ EA  L  ++    +  + +
Sbjct: 368 RHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIV 427

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T T ++D   K G+  +A  +F  +L+     N VTYS L+DGY K   M+ A  V ++M
Sbjct: 428 TCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKM 487

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + ++ PN+             G  ++A+ +   M++  +MP+ ++ + L D
Sbjct: 488 EKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILID 539



 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 36/153 (23%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++ + GL PD ITYNTII  YC   + ++A+ +  ++    + PN++T+ ILI   CK G
Sbjct: 660 RMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTG 719

Query: 77  ------------------------------------RMDDATMMFSKMLEKGPKANVVTY 100
                                                +    ++  +M+++G  A++VTY
Sbjct: 720 FVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTY 779

Query: 101 SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           + LI GY    +++ A   Y +M  + I+PNI 
Sbjct: 780 NALIRGYCTGSHVEKALKTYSQMFVDGIAPNIT 812



 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 31/187 (16%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           L D G+  D+I  NT+I GYC    + +A +L E      +K + +T+  L+ AFCK G 
Sbjct: 223 LVDGGVTKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGD 282

Query: 78  MDDATMMFSKMLE-------------------KGPKANVVTYSCLIDGYFKSQNMKSAFD 118
           +  A  +F+++L                    K  +  +VTY+ LI  Y K   ++ +  
Sbjct: 283 LTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHS 342

Query: 119 VYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
           +Y++M  N I P++             G+ TEA  L+  M   G+ P+ +  +T+ +   
Sbjct: 343 LYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLF 402

Query: 167 QSSGSQE 173
           +S    E
Sbjct: 403 KSGRVME 409



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 17  QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
           ++  RG+  D++TYN +I GYC+ + +++A++ + ++    + PN  T+  L+      G
Sbjct: 766 EMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAG 825

Query: 77  ----RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
                M++   + S+M E+G   N  TY  L+ GY +  N K    ++ EM      P +
Sbjct: 826 LMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTL 885

Query: 133 ------------AGRPTEAMQLYDSMLRNGIMPDGL 156
                       +G+  EA +L + +L  G +P+  
Sbjct: 886 KTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSF 921



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 31/185 (16%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D    L  ++  RGL  D IT N ++ GYC +  +  A  +   L    +  + I    
Sbjct: 178 VDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNT 237

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           LID +C+   M  AT +         K ++VTY+ L+  + K+ ++  A  ++ E+    
Sbjct: 238 LIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFW 297

Query: 126 -----------------NNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGL 156
                             N+ P +    T            E+  LY  M+ NGIMPD +
Sbjct: 298 KDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVV 357

Query: 157 LLSTL 161
             S++
Sbjct: 358 TCSSI 362



 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ----LKPNS 62
           H++ ALK + Q+   G+ P+I TYNT++ G  +   ++E ++  EKL        L PN+
Sbjct: 791 HVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNA 850

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
            T+ IL+  + + G      ++  +M+ KG    + TY+ LI  Y KS  M  A ++  +
Sbjct: 851 ATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLND 910

Query: 123 MCENNISPN 131
           +      PN
Sbjct: 911 LLTKGRIPN 919



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE +  AAL +  ++ ++ +  D++ YN +I G   L + D    +  ++  + L P+ I
Sbjct: 613 KEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPR-YVCSRMIELGLAPDCI 671

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110
           T+  +I+ +C +G+ +DA  + ++M   G   N VTY+ LI G  K+
Sbjct: 672 TYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKT 718



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D +TYNT+I G+C    +D+   L  ++    L  +SIT  IL+  +C+ G +  A  + 
Sbjct: 161 DNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVM 220

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
             +++ G   +V+  + LIDGY ++  M  A ++ E    +++  +I 
Sbjct: 221 YNLVDGGVTKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDIV 268



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 13/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A     ++  R LE   + ++ ++     + R+DEA  L   +    + P+ + +  L
Sbjct: 548 DVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASL 607

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID + KEG    A  +  +M EK  + +VV Y+ LI G  +       + V   M E  +
Sbjct: 608 IDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSRMIELGL 666

Query: 129 SPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           +P+            I G+  +A+ + + M   GIMP+ +  + L
Sbjct: 667 APDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNIL 711



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           KL  ++ +RGL P+  TY+ ++ GY  +    + + L  ++      P   T+ +LI  +
Sbjct: 836 KLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDY 895

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108
            K G+M +A  + + +L KG   N  TY  L  G+ 
Sbjct: 896 AKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGWL 931



 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A  L   +  +G++PDI+ Y ++I GY        A+ + +++    ++ + + + 
Sbjct: 581 RMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYN 640

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI    + G+  D   + S+M+E G   + +TY+ +I+ Y      + A D+  EM   
Sbjct: 641 ALIKGLLRLGKY-DPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSY 699

Query: 127 NISPN 131
            I PN
Sbjct: 700 GIMPN 704



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 74/152 (48%), Gaps = 14/152 (9%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD+ + N ++   C +  LD A+        V +  +++T+  +I  FC++G +D  
Sbjct: 124 GVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDI--DNVTYNTVIWGFCQKGLVDQG 181

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
             + S+M+++G   + +T + L+ GY +   ++ A  V   + +  ++ ++ G  T    
Sbjct: 182 FGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDG 241

Query: 138 --------EAMQLYDSMLRNGIMPDGLLLSTL 161
                   +A +L ++  R+ +  D +  +TL
Sbjct: 242 YCEAVLMSQATELIENSWRSDVKIDIVTYNTL 273


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +D A+ L  ++  +G  PDI +YNTII   C+  +++EA  +FE L    +  N
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVAN 485

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT+  +I A  ++GR  DA  +  +M+  G   +VV+Y+ LI    K  N+  +  + E
Sbjct: 486 GITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLE 545

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           EM E  I PN               R  +A++L   ML  G+ PD +  +TL
Sbjct: 546 EMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL 597



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 12/183 (6%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           + E  L  A +L+  +  +G +PD  TY+ ++ G C L R+  AV+L  ++      PN 
Sbjct: 322 LAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNV 381

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +T+TI++ +FCK G  DD   +  +M  KG   N   Y+ +I    K   M  A  + +E
Sbjct: 382 VTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 441

Query: 123 MCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170
           M     +P+I    T            EA  +++++L  G++ +G+  +T+    L+   
Sbjct: 442 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGR 501

Query: 171 SQE 173
            Q+
Sbjct: 502 WQD 504



 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 76/131 (58%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+++     A++L  ++   G   D+++YN +I   C    +D ++ L E++    +KPN
Sbjct: 496 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 555

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++++ ILI   CKE R+ DA  +  +ML +G   ++VTY+ LI+G  K   M +A ++ E
Sbjct: 556 NVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLE 615

Query: 122 EMCENNISPNI 132
           ++   N+ P+I
Sbjct: 616 KLHNENVHPDI 626



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 54/88 (61%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  AL+L  Q+ ++GL PDI+TYNT+I G C +  +  A+ L EKL    + P+
Sbjct: 566 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 625

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML 89
            IT+ ILI   CK   +DDA M+ ++ +
Sbjct: 626 IITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 16/158 (10%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  + G++     E +++ +NT+I G  +  +L EA +L+E +     +P++ T++IL
Sbjct: 297 DEARAMLGRVP----ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           +   CK GR+  A  +  +M +KG   NVVTY+ ++  + K+        + EEM    +
Sbjct: 353 MHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           + N              GR  EAM L   M   G  PD
Sbjct: 413 TLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 450



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 90/185 (48%), Gaps = 17/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   + +A++L  ++  +G  P+++TY  ++  +C     D+   L E+++   L  N
Sbjct: 356 LCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S  +  +I A CK+GRMD+A  +  +M  +G   ++ +Y+ +I     ++ M+ A  ++E
Sbjct: 416 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNG-----IMPDGLLLSTLADY 164
            + E  +  N              GR  +A++L   M+ +G     +  +GL+ +   D 
Sbjct: 476 NLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDG 535

Query: 165 NLQSS 169
           N+  S
Sbjct: 536 NVDRS 540



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 65/113 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++D +L L  ++ ++G++P+ ++YN +I   C   R+ +A++L +++    L P+ +
Sbjct: 533 KDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIV 592

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           T+  LI+  CK G M  A  +  K+  +    +++TY+ LI  + K + +  A
Sbjct: 593 TYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDA 645



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL L   +   G  PD + Y T+I   C    + EA  L  ++  +    +  TF  +
Sbjct: 192 NEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDV 251

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN- 127
           +   C  GR+ +A  +  +M+ KG    V+TY  L+ G  + +    A  +   + E N 
Sbjct: 252 VRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNV 311

Query: 128 ------ISPNIA-GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                 I   +A G+  EA +LY++M   G  PD    S L
Sbjct: 312 VLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 29/162 (17%)

Query: 5   ECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +CH DA L L+ ++  R  + P   T+       C L R +EA+ L   +      P+++
Sbjct: 153 DCHADA-LALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAV 211

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +  +I A C +G + +A  + ++ML  G  A+V T+                 DV   M
Sbjct: 212 LYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFD----------------DVVRGM 255

Query: 124 CENNISPNIAGRPTEAMQLYDSMLRNGIMPD----GLLLSTL 161
           C         GR  EA +L D M+  G MP     G LL  L
Sbjct: 256 CG-------LGRVREAARLVDRMMTKGCMPGVMTYGFLLQGL 290


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 67/124 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ A + +  +  RG+ PD++TYNT+I GYC    ++EA Q F ++    + P  I++T
Sbjct: 274 RLETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYT 333

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  +    R DDA  +F +M   G K N +TYS L+ G   ++ +  A  +  EM   
Sbjct: 334 TMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTR 393

Query: 127 NISP 130
           + +P
Sbjct: 394 HFAP 397



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 62/121 (51%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F  + + G+EP   TYN ++ G+    RL+ A + +E +    + P+ +T+  +I+
Sbjct: 243 AKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMIN 302

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+   M++A   F++M  K     V++Y+ +I GY        A  ++EEM      P
Sbjct: 303 GYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKP 362

Query: 131 N 131
           N
Sbjct: 363 N 363



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+K+F ++ + G+E  + +Y+ +        R   A + F  +    ++P   T+ +++ 
Sbjct: 208 AVKIFQKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLW 267

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F    R++ A   +  M  +G   +VVTY+ +I+GY + + M+ A   + EM   NI+P
Sbjct: 268 GFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAP 327

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +              R  +A++L++ M   G  P+ +  STL
Sbjct: 328 TVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTL 370



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 26/191 (13%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--LKPN 61
           K   LDAA+ +   +    +  +   Y  +I   C     D+AV+L E L   +  L+P 
Sbjct: 412 KHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQ 471

Query: 62  SI------TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
           S        + ++I   C  G+   A   F ++L+KG + + V ++ LI G+ K  N   
Sbjct: 472 STLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQ-DEVAFNNLIRGHAKEGNPDL 530

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLL----- 158
           AF++ + M    +S +              G P +A    DSM+ NG  PD  L      
Sbjct: 531 AFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVME 590

Query: 159 STLADYNLQSS 169
           S  AD  +Q++
Sbjct: 591 SLFADGRVQTA 601



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L +   L+ A  +   + ++G++ D   +  +I  Y     + EAV++F+K+  + ++ 
Sbjct: 163 ILGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVER 222

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           +  ++  L     + GR   A   F+ ML +G +    TY+ ++ G+F S  +++A   Y
Sbjct: 223 SVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFY 282

Query: 121 EEMCENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTL 161
           E+M    ISP++    T            EA Q +  M    I P  +  +T+
Sbjct: 283 EDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTM 335



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 9   DAALKLFGQLTDR--------GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           D A+KL   L ++         LE +   YN II   C+  +  +A   F +L    ++ 
Sbjct: 452 DQAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQ- 510

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + + F  LI    KEG  D A  M   M  +G   +  +Y  LI  Y        A    
Sbjct: 511 DEVAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTAL 570

Query: 121 EEMCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           + M EN  SP+ A            GR   A ++ +SML  GI
Sbjct: 571 DSMIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLDKGI 613



 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 9/150 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE + D A ++   +  RG+  D  +Y  +I  Y S     +A    + +      P+S 
Sbjct: 524 KEGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSA 583

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            F  ++++   +GR+  A+ + + ML+KG   N+   + +++  F   + + A      +
Sbjct: 584 LFRSVMESLFADGRVQTASRVMNSMLDKGITENLDLVAKILEALFMRGHDEEALGRINLL 643

Query: 124 CENNISPNI---------AGRPTEAMQLYD 144
              N  P+           G+ T A +L D
Sbjct: 644 MNCNCPPDFNSLLSVLCEKGKTTSAFKLLD 673


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +  A  +F ++   GL+P  +++NT+I GYC    L+E  +L   +   ++ P+
Sbjct: 242 LCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPD 301

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T++ LID  CKE +++DA  +F +M ++G   N VT++ LI+G  K+  +  A ++Y+
Sbjct: 302 VFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQ 361

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M    +  ++             G   EA +    M + G++PD    +TL D
Sbjct: 362 QMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLD 415



 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KEC L+ A  LF ++ DRGL P+ +T+ T+I G C   R+D A+++++++    LK +
Sbjct: 312 LCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKAD 371

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +  LID  CK G   +A     +M ++G   +  TY+ L+DG  K  +++ A ++ +
Sbjct: 372 LVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRK 431

Query: 122 EMCENNIS-PNIA-----------GRPTEAMQLYDSMLRNGIMPD 154
           EM +  I   N+A           G+  +A +    MLR G+ PD
Sbjct: 432 EMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPD 476



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 86/166 (51%), Gaps = 12/166 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            AL+ + ++ D G  P++ T+N ++   C   ++ +A  +F+++    L+P +++F  LI
Sbjct: 215 VALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLI 274

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
           + +CK G +++   +   M E     +V TYS LIDG  K   ++ A  +++EMC+  + 
Sbjct: 275 NGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLV 334

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           PN              GR   A+++Y  M   G+  D +L +TL D
Sbjct: 335 PNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLID 380



 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 18/185 (9%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  +   A K  G++T RGL PD  TY T++ G C    L+ A+++ +++    ++ +
Sbjct: 382 LCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLD 441

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ FT +I   C++G++ DA     +ML  G K +  TY+ ++DG+ K  ++K  F + +
Sbjct: 442 NVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLK 501

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           EM  +   P +             G+   A  L ++ML  G++PD +       YN+   
Sbjct: 502 EMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDI------TYNILLQ 555

Query: 170 GSQEH 174
           G  +H
Sbjct: 556 GHCKH 560



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 55/102 (53%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           GL+PD  TY  ++ G+C    +    +L +++      P  IT+ +L++  CK+G++ +A
Sbjct: 472 GLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNA 531

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            M+ + ML  G   + +TY+ L+ G+ K   +    +V  EM
Sbjct: 532 DMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM 573



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +    KL  ++   G  P +ITYN ++ G C   ++  A  L   +  + + P+ I
Sbjct: 489 KKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDI 548

Query: 64  TFTILIDAFCKEGRMDD 80
           T+ IL+   CK G++ D
Sbjct: 549 TYNILLQGHCKHGKLGD 565


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A +L  ++  +G EP ++TY ++I G   ++RLDEA  LFE+    +++ N + ++ 
Sbjct: 603 VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS 662

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID F K GR+D+A ++  ++++KG   NV T++ L+D   K++ +  A   ++ M E  
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELK 722

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +PN       I G     +  +A   +  M + G+ P  +  +T+
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 23/199 (11%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML +   LD A +L   +   GL P++ T N ++   C   +LDEA  +FE++      P
Sbjct: 386 MLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTP 445

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + ITF  LID   K GR+DDA  ++ KML+   + N + Y+ LI  +F     +    +Y
Sbjct: 446 DEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIY 505

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD---------GLLLS 159
           ++M   N SP++            AG P +   +++ +     +PD         GL+ +
Sbjct: 506 KDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKA 565

Query: 160 TLAD--YNLQSSGSQEHCI 176
             A+  Y L  S  ++ C+
Sbjct: 566 GFANETYELFYSMKEQGCV 584



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 13/180 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K F ++   GL+PD +TY ++I   C  NRLDEAV++FE L   +  P +  +  
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +   G+ D+A  +  +   KG   +V+ Y+C++    K   +  A  V+EEM + +
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEM-KKD 372

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            AG+   A +L DSM + G+ P+   ++ + D   +S    E C
Sbjct: 373 AAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEAC 432



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 73/131 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK    +   +LF  + ++G   D   YN +I G+C   ++++A QL E++     +P 
Sbjct: 562 LIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPT 621

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID   K  R+D+A M+F +   K  + NVV YS LIDG+ K   +  A+ + E
Sbjct: 622 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILE 681

Query: 122 EMCENNISPNI 132
           E+ +  ++PN+
Sbjct: 682 ELMQKGLTPNV 692



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL++F ++  +   P++ TYN +I   C   +LD A +L + +    L PN
Sbjct: 353 LRKMGKVDEALRVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPN 411

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T  I++D  CK  ++D+A  +F +M  K    + +T+  LIDG  K   +  A+ +YE
Sbjct: 412 VRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYE 471

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +++   N              GR  +  ++Y  M+     PD  LL+T  D
Sbjct: 472 KMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMD 525



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H D  L LF Q+ + G EP +  + T+I G+    R+D A+ L +++    L  + + + 
Sbjct: 183 HSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYN 242

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + ID+F K G++D A   F ++   G K + VTY+ +I    K+  +  A +++E + +N
Sbjct: 243 VCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKN 302

Query: 127 NISP------------NIAGRPTEAMQLYDSMLRNGIMP 153
              P              AG+  EA  L +     G +P
Sbjct: 303 RRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 47/219 (21%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-------- 52
           +L K   LD A+++F  L      P    YNT+I GY S  + DEA  L E+        
Sbjct: 282 VLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341

Query: 53  --------LTCVQ------------------LKPNSITFTILIDAFCKEGRMDDATMMFS 86
                   LTC++                    PN  T+ ILID  C+ G++D A  +  
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRD 401

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAG 134
            M + G   NV T + ++D   KSQ +  A  ++E+M     +P+              G
Sbjct: 402 SMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVG 461

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           R  +A ++Y+ ML +    + ++ ++L   N  + G +E
Sbjct: 462 RVDDAYKIYEKMLDSDCRTNSIVYTSLIK-NFFNHGRKE 499



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
             P    Y T+I  + ++N  D  + LF+++  +  +P    FT LI  F KEGR+D A 
Sbjct: 164 FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSAL 223

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----------- 131
            +  +M      A++V Y+  ID + K   +  A+  + E+  N + P+           
Sbjct: 224 SLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVL 283

Query: 132 -IAGRPTEAMQLYDSMLRNGIMP 153
             A R  EA+++++ + +N  +P
Sbjct: 284 CKANRLDEAVEMFEHLEKNRRVP 306



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 61/121 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ AL  F  + +    P+ +TY  +I G C + + ++A   ++++    +KP+
Sbjct: 702 LVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPS 761

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I++T +I    K G + +A  +F +    G   +   Y+ +I+G         AF ++E
Sbjct: 762 TISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFE 821

Query: 122 E 122
           E
Sbjct: 822 E 822



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 51/211 (24%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  +F Q+  +   PD IT+ ++I G   + R+D+A +++EK+     + N
Sbjct: 422 LCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTN 481

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML------------------------EKG----- 92
           SI +T LI  F   GR +D   ++  M+                        EKG     
Sbjct: 482 SIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE 541

Query: 93  --------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNIA------ 133
                   P A   +YS LI G  K+      ++++  M E     +  + NI       
Sbjct: 542 EIKSRRFVPDAR--SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G+  +A QL + M   G  P  +   ++ D
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVID 630



 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 12/163 (7%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           K++  + ++   PD+   NT +         ++   +FE++   +  P++ +++ILI   
Sbjct: 503 KIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGL 562

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
            K G  ++   +F  M E+G   +   Y+ +IDG+ K   +  A+ + EEM      P +
Sbjct: 563 IKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 622

Query: 133 A------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                         R  EA  L++      I  + ++ S+L D
Sbjct: 623 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLID 665



 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 51/115 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A   + ++  +G++P  I+Y T+I G      + EA  LF++       P+
Sbjct: 737 LCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           S  +  +I+      R  DA  +F +   +G   +  T   L+D   K+  ++ A
Sbjct: 797 SACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQA 851



 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++  A  LF +    G  PD   YN +I G  + NR  +A  LFE+     L  +
Sbjct: 772 LAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIH 831

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           + T  +L+D   K   ++ A ++ + + E G
Sbjct: 832 NKTCVVLLDTLHKNDCLEQAAIVGAVLRETG 862


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A  +F Q++ +G  P+   YN++I G+C+  RL EA+ L  ++    L P+  T  I
Sbjct: 480 VDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNI 539

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I+  CKEGRM  A+ +F  M   G   ++VTY+ LIDGY K+ +  S  +V  +M    
Sbjct: 540 IINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATG 599

Query: 128 ISPNI-----------AGRP-TEAMQLYDSMLRNGIMPDGLLLSTL 161
             P+I            GR  + A+ + + ++  G++PD +  +T+
Sbjct: 600 WDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTV 645



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 65/124 (52%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
            A  L+ ++  RG+ PD + ++  I G   +  +DEA  +F +++     PN+  +  LI
Sbjct: 447 GAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLI 506

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
             FC  GR+ +A M+  +M  KG   ++ T + +I+G  K   MKSA DV+  M    + 
Sbjct: 507 RGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLI 566

Query: 130 PNIA 133
           P+I 
Sbjct: 567 PDIV 570



 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A+K    + ++G+ P ++ +N+II  Y      ++A + +  +    L P+S+T + 
Sbjct: 340 LDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSS 399

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI    K  R+ +A  +  +M+ +G   N   ++ L+DGYF+  ++  A+ ++ EM    
Sbjct: 400 LIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRG 459

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I P+            I G   EA  ++  M + G MP+  + ++L
Sbjct: 460 IHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSL 505



 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +PD+  YN +I  YC+  +  +A+     +      P+ +TF  +I+AFC +G M +A  
Sbjct: 181 QPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARN 240

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           +F  M E G   NVV Y+ L++GY K++++  A  +YEEM    ++P+
Sbjct: 241 LFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPD 288



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  + +A  +F  +   GL PDI+TYNT+I GYC         ++  K+      P+
Sbjct: 544 LCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPD 603

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
             T+ I +   C   +M  A MM  +++  G   + VTY+ +++G
Sbjct: 604 ITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNG 648



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  LF  + + G  P+++ YNT++ GY     + +A  L+E++    + P+  TF IL+ 
Sbjct: 238 ARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVA 297

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              + GR +D   +   + + G  +    Y+  + G   +  +  A    E+M E  I+P
Sbjct: 298 GHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITP 357

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +            AG   +A + Y  M++ G+ P  L  S+L
Sbjct: 358 TVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSL 400



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   L  A  L  ++   GL  +   +  ++ GY  +  +  A  L+ ++    + P+
Sbjct: 404 LSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPD 463

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ F+  I+     G +D+A  +F +M +KG   N   Y+ LI G+  S  ++ A  +  
Sbjct: 464 AVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLER 523

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           EM    + P+I             GR   A  ++ +M   G++PD +  +TL D
Sbjct: 524 EMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLID 577



 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 20/161 (12%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK----PNSITF 65
           +  KL   +  +G  P    +N +I G+C        V++ E L CV  K    P+   +
Sbjct: 132 SVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGH----VKVGESLLCVMQKFKCQPDVYAY 187

Query: 66  TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
            ILI+A+C  G+  DA      M++ G   ++VT+  +I+ +    NM  A ++++ M E
Sbjct: 188 NILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKE 247

Query: 126 NNISPNIAGRPT------------EAMQLYDSMLRNGIMPD 154
               PN+    T            +A  LY+ M    + PD
Sbjct: 248 AGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPD 288



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 59/129 (45%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K   +  A  L+ ++  + + PD  T+N ++ G+    R ++  +L   L+       S
Sbjct: 265 VKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSIS 324

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
             + I +   C  G +D+A      MLEKG    VV ++ +I  Y ++   + A+  Y  
Sbjct: 325 SLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRM 384

Query: 123 MCENNISPN 131
           M +  + P+
Sbjct: 385 MVKFGLFPS 393



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A+ +  +L   G+ PD +TYNT++ G C+ + L+ A+ +  KL  +   PN +T  +
Sbjct: 620 MSRAVMMLEELISAGVVPDTVTYNTVMNGVCT-DVLERAMIVTAKLLKMAFVPNVVTANL 678

Query: 68  LIDAFCKEGRMDDATMMFSKMLEK 91
           L+  FCK+G M + T+M+ + L +
Sbjct: 679 LLSHFCKQG-MPEKTIMWGQKLNE 701



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G +PDI TYN  + G C+  ++  AV + E+L    + P+++T+  +++  C +  ++ A
Sbjct: 599 GWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVCTD-VLERA 657

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113
            ++ +K+L+     NVVT + L+  +F  Q M
Sbjct: 658 MIVTAKLLKMAFVPNVVTANLLLS-HFCKQGM 688



 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 12/151 (7%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
            E D    +T++ G+  +    EA+++  ++  V L+P+S   TIL     + G      
Sbjct: 75  FESDFSVLDTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVW 134

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---------- 132
            +   M+ +GP+     ++ +I G+ +  ++K    +   M +    P++          
Sbjct: 135 KLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAY 194

Query: 133 --AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
              G+  +A+     M+ NG  P  +   T+
Sbjct: 195 CTRGQTFDALGWMRFMIDNGCTPSLVTFGTV 225


>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
 gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
          Length = 534

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL+LF  +     +PD+ +YNTII G C   RL  A+++F ++    + P  +T+T LI 
Sbjct: 184 ALRLFRNIP----KPDVCSYNTIIDGLCRRGRLAAALEMFSEMVGKCIAPTVVTYTTLIH 239

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              +EG  DDA  +F +M  +G   N+VTYS LIDG  K     SA ++ + M +    P
Sbjct: 240 WLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDRMIKEKKLP 299

Query: 131 NIAGRP------------TEAMQLYDSMLRNGIMPDGLLLSTL 161
           N                 +EAM++ D M   G  PD  L   L
Sbjct: 300 NTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKL 342



 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   L AAL++F ++  + + P ++TY T+I         D+A+++F+++    + PN
Sbjct: 206 LCRRGRLAAALEMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPN 265

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T++ LID  CK GR   A  +  +M+++    N +TYS +IDG  K   +  A +V +
Sbjct: 266 LVTYSSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLD 325

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
            M      P+             AGR  EA    D M+  GI P+
Sbjct: 326 RMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPN 370



 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 18/176 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLD--EAVQLFEKLTCVQLK 59
           L+   HL  A  L   +   G  P   TYN ++   CS    D  +A++LF  +     K
Sbjct: 138 LVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAQCSDAAADIKDALRLFRNIP----K 193

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           P+  ++  +ID  C+ GR+  A  MFS+M+ K     VVTY+ LI    +      A  +
Sbjct: 194 PDVCSYNTIIDGLCRRGRLAAALEMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKI 253

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++EM    +SPN+             GR   A++L D M++   +P+ +  S++ D
Sbjct: 254 FDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSSVID 309



 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L  A+++  ++  +G +PD   +  +I G C   R  EA    +++    ++PN
Sbjct: 311 LCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPN 370

Query: 62  SITFTI-------LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114
            +T+++       ++ A C +G +  A  ++     +    +  T+  L++ + K +NM+
Sbjct: 371 RVTWSLHTRINNTVLTALCAKGELGRAFQVYQSTRTRSISTDPTTFHLLVESFSKKKNME 430

Query: 115 SAFDVYEEMCENNISP 130
            A  V  +M      P
Sbjct: 431 KAAHVVLDMLSERCIP 446



 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 7/129 (5%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           +AL+L  ++      P+ ITY+++I G C  + L EA+++ +++     KP++  F  LI
Sbjct: 284 SALELMDRMIKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLI 343

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYS-------CLIDGYFKSQNMKSAFDVYEE 122
              C  GR  +A     +M+  G + N VT+S        ++        +  AF VY+ 
Sbjct: 344 VGLCDAGRAVEAANYLDEMILAGIEPNRVTWSLHTRINNTVLTALCAKGELGRAFQVYQS 403

Query: 123 MCENNISPN 131
               +IS +
Sbjct: 404 TRTRSISTD 412


>gi|8920567|gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL LF Q+   GL PD++ Y+ +I G C L + D A+ L++++   ++ PN
Sbjct: 386 LCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPN 445

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T   L+   C++G + +A  +   ++  G   ++V Y+ +IDGY KS  ++ A ++++
Sbjct: 446 SRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFK 505

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + E  I+P++A                EA ++ D +   G+ P  +  +TL D
Sbjct: 506 VVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMD 559



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A   F  +   GL P + ++N +I G C +  + EA++L   +    ++P+S+T+ I
Sbjct: 251 VDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNI 310

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L   F   G +  A  +   ML+KG   +V+TY+ L+ G  +  N+     + ++M    
Sbjct: 311 LAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRG 370

Query: 128 ISPNI-------------AGRPTEAMQLYDSMLRNGIMPD 154
              N               GR  EA+ L++ M  +G+ PD
Sbjct: 371 FELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPD 410



 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL+LF  + + G+ P + T+N++I GYC    + EA ++ + +    L P+ +++T 
Sbjct: 497 IEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTT 556

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA+   G       +  +M  +G     VTYS +  G  +            E C + 
Sbjct: 557 LMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWK--------HENCNHV 608

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +   I  +  + ++    M   GI PD +  +T+  Y
Sbjct: 609 LRERIFEKCKQGLR---DMESEGIPPDQITYNTIIQY 642



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           + + P ++++N+I+ GYC L  +D A   F  +    L P+  +  ILI+  C  G + +
Sbjct: 229 KDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAE 288

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           A  + S M + G + + VTY+ L  G+     +  A++V  +M +  +SP++
Sbjct: 289 ALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDV 340



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L   L   G   DI+ YN +I GY     ++EA++LF+ +    + P+  TF  LI 
Sbjct: 465 ARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIY 524

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK   + +A  +   +   G   +VV+Y+ L+D Y    N KS  ++  EM    I P
Sbjct: 525 GYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPP 584

Query: 131 N 131
            
Sbjct: 585 T 585



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 12/138 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TY+T++ G C   +L++AV          + P+ ++F  ++  +CK G +D A   F  +
Sbjct: 202 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 261

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP------------NIAGRP 136
           L+ G   +V +++ LI+G     ++  A ++  +M ++ + P            ++ G  
Sbjct: 262 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 321

Query: 137 TEAMQLYDSMLRNGIMPD 154
           + A ++   ML  G+ PD
Sbjct: 322 SGAWEVIRDMLDKGLSPD 339



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD ITYNTII   C +  L  A    E +    L  +S T+ ILID+ C  G +  A
Sbjct: 628 GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKA 687

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
                 + E+    +   Y+ LI  +    + + A  ++ ++     + +I         
Sbjct: 688 DSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINR 747

Query: 138 --------EAMQLYDSMLRNGIMPD 154
                   E+   +  ML  GI PD
Sbjct: 748 LCRRHLVNESKFFFCLMLSQGISPD 772



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 2/150 (1%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A      +  R L+    TYN +I   C    + +A      L    +  +   +T
Sbjct: 648 HLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYT 707

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI A C +G  + A  +F ++L +G   ++  YS +I+   +   +  +   +  M   
Sbjct: 708 TLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQ 767

Query: 127 NISP--NIAGRPTEAMQLYDSMLRNGIMPD 154
            ISP  +I     ++ +L    ++ G++PD
Sbjct: 768 GISPDLDICEVMIKSDELLSWTIKWGLLPD 797



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/167 (18%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D +L +  ++ D+ L     +YN+++  +      D+   +++++       N  T++ 
Sbjct: 153 VDDSLYILKKMKDQNLNVSTQSYNSVLYHF---RETDKMWDVYKEIK----DKNEHTYST 205

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D  C++ +++DA +       K    +VV+++ ++ GY K   +  A   +  + +  
Sbjct: 206 VVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCG 265

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + P++             G   EA++L   M ++G+ PD +  + LA
Sbjct: 266 LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILA 312



 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+   +   GL P +++Y T++  Y +        +L  ++    + P ++T++++  
Sbjct: 535 ARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFK 594

Query: 71  AFCKEGRMDDAT-MMFSKMLEK-----------GPKANVVTYSCLIDGYFKSQNMKSAFD 118
             C+  + ++   ++  ++ EK           G   + +TY+ +I    + +++  AF 
Sbjct: 595 GLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFV 654

Query: 119 VYEEMCENNISPNIA 133
             E M   N+  + A
Sbjct: 655 FLEIMKSRNLDASSA 669


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 13/180 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A K F ++   GL+PD +TY ++I   C  NRLDEAV++FE L   +  P +  +  
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I  +   G+ D+A  +  +   KG   +V+ Y+C++    K   +  A  V+EEM + +
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM-KKD 372

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            +PN+            AG+   A +L DSM + G+ P+   ++ + D   +S    E C
Sbjct: 373 AAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEAC 432



 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 23/199 (11%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           ML +   LD A +L   +   GL P++ T N ++   C   +LDEA  +FE++      P
Sbjct: 386 MLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTP 445

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + ITF  LID   K GR+DDA  ++ KML+   + N + Y+ LI  +F     +    +Y
Sbjct: 446 DEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIY 505

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD---------GLLLS 159
           ++M   N SP++            AG P +   +++ +     +PD         GL+ +
Sbjct: 506 KDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKA 565

Query: 160 TLAD--YNLQSSGSQEHCI 176
             A+  Y L  S  ++ C+
Sbjct: 566 GFANETYELFYSMKEQGCV 584



 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 12/166 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A +L  ++  +G EP ++TY ++I G   ++RLDEA  LFE+    +++ N + ++ 
Sbjct: 603 VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS 662

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID F K GR+D+A ++  ++++KG   N+ T++ L+D   K++ +  A   ++ M E  
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +PN       I G     +  +A   +  M + G+ P  +  +T+
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 73/131 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LIK    +   +LF  + ++G   D   YN +I G+C   ++++A QL E++     +P 
Sbjct: 562 LIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPT 621

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  +ID   K  R+D+A M+F +   K  + NVV YS LIDG+ K   +  A+ + E
Sbjct: 622 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILE 681

Query: 122 EMCENNISPNI 132
           E+ +  ++PN+
Sbjct: 682 ELMQKGLTPNL 692



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D ALK+F ++  +   P++ TYN +I   C   +LD A +L + +    L PN
Sbjct: 353 LRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPN 411

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T  I++D  CK  ++D+A  MF +M  K    + +T+  LIDG  K   +  A+ VYE
Sbjct: 412 VRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYE 471

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M +++   N              GR  +  ++Y  M+     PD  LL+T  D
Sbjct: 472 KMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMD 525



 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           H D  L LF Q+ + G EP +  + T+I G+    R+D A+ L +++    L  + + + 
Sbjct: 183 HSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYN 242

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           + ID+F K G++D A   F ++   G K + VTY+ +I    K+  +  A +++E + +N
Sbjct: 243 VCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKN 302

Query: 127 NISP------------NIAGRPTEAMQLYDSMLRNGIMP 153
              P              AG+  EA  L +     G +P
Sbjct: 303 RRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 47/219 (21%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-------- 52
           +L K   LD A+++F  L      P    YNT+I GY S  + DEA  L E+        
Sbjct: 282 VLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341

Query: 53  --------LTCVQ------------------LKPNSITFTILIDAFCKEGRMDDATMMFS 86
                   LTC++                    PN  T+ ILID  C+ G++D A  +  
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRD 401

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IAG 134
            M + G   NV T + ++D   KSQ +  A  ++EEM     +P+              G
Sbjct: 402 SMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVG 461

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           R  +A ++Y+ ML +    + ++ ++L   N  + G +E
Sbjct: 462 RVDDAYKVYEKMLDSDCRTNSIVYTSLIK-NFFNHGRKE 499



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
             P    Y T+I  + ++N  D  + LF+++  +  +P    FT LI  F KEGR+D A 
Sbjct: 164 FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSAL 223

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----------- 131
            +  +M      A++V Y+  ID + K   +  A+  + E+  N + P+           
Sbjct: 224 SLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVL 283

Query: 132 -IAGRPTEAMQLYDSMLRNGIMP 153
             A R  EA+++++ + +N  +P
Sbjct: 284 CKANRLDEAVEMFEHLEKNRRVP 306



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 61/121 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K   ++ AL  F  + +    P+ +TY  +I G C + + ++A   ++++    +KP+
Sbjct: 702 LVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPS 761

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +I++T +I    K G + +A  +F +    G   +   Y+ +I+G         AF ++E
Sbjct: 762 TISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFE 821

Query: 122 E 122
           E
Sbjct: 822 E 822



 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 51/211 (24%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  +F ++  +   PD IT+ ++I G   + R+D+A +++EK+     + N
Sbjct: 422 LCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTN 481

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML------------------------EKG----- 92
           SI +T LI  F   GR +D   ++  M+                        EKG     
Sbjct: 482 SIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE 541

Query: 93  --------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNIA------ 133
                   P A   +YS LI G  K+      ++++  M E     +  + NI       
Sbjct: 542 EIKARRFVPDAR--SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599

Query: 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            G+  +A QL + M   G  P  +   ++ D
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVID 630



 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 51/115 (44%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    + A   + ++  +G++P  I+Y T+I G      + EA  LF++       P+
Sbjct: 737 LCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
           S  +  +I+      R  DA  +F +   +G   +  T   L+D   K+  ++ A
Sbjct: 797 SACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQA 851



 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K  ++  A  LF +    G  PD   YN +I G  + NR  +A  LFE+     L  +
Sbjct: 772 LAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIH 831

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
           + T  +L+D   K   ++ A ++ + + E G
Sbjct: 832 NKTCVVLLDTLHKNDCLEQAAIVGAVLRETG 862


>gi|240254074|ref|NP_172820.4| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190928|gb|AEE29049.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL LF Q+   GL PD++ Y+ +I G C L + D A+ L++++   ++ PN
Sbjct: 373 LCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPN 432

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T   L+   C++G + +A  +   ++  G   ++V Y+ +IDGY KS  ++ A ++++
Sbjct: 433 SRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFK 492

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + E  I+P++A                EA ++ D +   G+ P  +  +TL D
Sbjct: 493 VVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMD 546



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A   F  +   GL P + ++N +I G C +  + EA++L   +    ++P+S+T+ I
Sbjct: 238 VDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNI 297

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L   F   G +  A  +   ML+KG   +V+TY+ L+ G  +  N+     + ++M    
Sbjct: 298 LAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRG 357

Query: 128 ISPNI-------------AGRPTEAMQLYDSMLRNGIMPD 154
              N               GR  EA+ L++ M  +G+ PD
Sbjct: 358 FELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPD 397



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL+LF  + + G+ P + T+N++I GYC    + EA ++ + +    L P+ +++T 
Sbjct: 484 IEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTT 543

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA+   G       +  +M  +G     VTYS +  G  +            E C + 
Sbjct: 544 LMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWK--------HENCNHV 595

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +   I  +  + ++    M   GI PD +  +T+  Y
Sbjct: 596 LRERIFEKCKQGLR---DMESEGIPPDQITYNTIIQY 629



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           + + P ++++N+I+ GYC L  +D A   F  +    L P+  +  ILI+  C  G + +
Sbjct: 216 KDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAE 275

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           A  + S M + G + + VTY+ L  G+     +  A++V  +M +  +SP++
Sbjct: 276 ALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDV 327



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L   L   G   DI+ YN +I GY     ++EA++LF+ +    + P+  TF  LI 
Sbjct: 452 ARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIY 511

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK   + +A  +   +   G   +VV+Y+ L+D Y    N KS  ++  EM    I P
Sbjct: 512 GYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPP 571



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TY+T++ G C   +L++AV          + P+ ++F  ++  +CK G +D A   F  +
Sbjct: 189 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 248

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP------------NIAGRP 136
           L+ G   +V +++ LI+G     ++  A ++  +M ++ + P            ++ G  
Sbjct: 249 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 308

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
           + A ++   ML  G+ PD +  + L
Sbjct: 309 SGAWEVIRDMLDKGLSPDVITYTIL 333



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 50/111 (45%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD ITYNTII   C +  L  A    E +    L  +S T+ ILID+ C  G +  A
Sbjct: 615 GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKA 674

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
                 + E+    +   Y+ LI  +    + + A  ++ ++     + +I
Sbjct: 675 DSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSI 725



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/167 (18%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D +L +  ++ D+ L     +YN+++  +      D+   +++++       N  T++ 
Sbjct: 140 VDDSLYILKKMKDQNLNVSTQSYNSVLYHF---RETDKMWDVYKEIK----DKNEHTYST 192

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D  C++ +++DA +       K    +VV+++ ++ GY K   +  A   +  + +  
Sbjct: 193 VVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCG 252

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + P++             G   EA++L   M ++G+ PD +  + LA
Sbjct: 253 LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILA 299



 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A      +  R L+    TYN +I   C    + +A      L    +  +   +T
Sbjct: 635 HLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYT 694

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            LI A C +G  + A  +F ++L +G   ++  YS +I+
Sbjct: 695 TLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVIN 733



 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+   +   GL P +++Y T++  Y +        +L  ++    + P ++T++++  
Sbjct: 522 ARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFK 581

Query: 71  AFCKEGRMDDAT-MMFSKMLEK-----------GPKANVVTYSCLIDGYFKSQNMKSAFD 118
             C+  + ++   ++  ++ EK           G   + +TY+ +I    + +++  AF 
Sbjct: 582 GLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFV 641

Query: 119 VYEEMCENNISPNIA 133
             E M   N+  + A
Sbjct: 642 FLEIMKSRNLDASSA 656


>gi|255586858|ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525946|gb|EEF28343.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 23/153 (15%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           LI+   +D ALKLF  ++ RG  PD+I YN ++ G    +R +EA  LF ++    L P+
Sbjct: 381 LIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPS 440

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+ +LID +CK G +DDA      M  K  + NV TY+ LIDG  K            
Sbjct: 441 VVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCK------------ 488

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPD 154
                      AGRP +A+ L++ M R G  P+
Sbjct: 489 -----------AGRPDDAVMLWNEMRRRGCRPN 510



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 62/109 (56%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + A  LF ++  +GL P ++TYN +I G+C    +D+A+     ++  + +PN  T+T L
Sbjct: 423 EEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTL 482

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           ID  CK GR DDA M++++M  +G + N V +   I G  K    ++A 
Sbjct: 483 IDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAAL 531



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 47/209 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++ C LD A+ LF  + + G   D++ YN +I G C+ +RL+E+ +L +++     KP 
Sbjct: 241 LMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEMEESGFKPT 300

Query: 62  SIT-----------------------------------FTILIDAFCKEGRMDDATMMFS 86
             T                                   +T+L+   CK G+  +A++  +
Sbjct: 301 QFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRKLCKHGKAAEASIFLT 360

Query: 87  KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-----CENNISPNI-------AG 134
            M+++G   N++ YS L+ G  + Q +  A  +++++     C + I+ NI       A 
Sbjct: 361 DMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAH 420

Query: 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           R  EA  L++ M+  G++P  +  + L D
Sbjct: 421 RTEEARNLFNEMVMKGLIPSVVTYNLLID 449



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D AL +F ++ D G   D   ++ ++  +    ++D++ +  EK+     + N  TF  
Sbjct: 26  FDEALNVFNEIQDHGW-LDAYVFSILVLSFSKWGQVDKSFEFIEKMEEQNFRLNEKTFCN 84

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  F K+ R+D    +F KM + G   ++  Y  LI G+  ++ +  A  +Y EM    
Sbjct: 85  LIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLK 144

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168
           I P+I        +L  S    G + D +L  TL D N+++
Sbjct: 145 IQPDIG----VVSKLISSFPEEGKLID-ILEETLEDMNIET 180



 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 51/79 (64%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            +K+  +D  ++LF ++   GL PDI  Y+ +I G+CS  +LD+A+ L+ ++  ++++P+
Sbjct: 89  FVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPD 148

Query: 62  SITFTILIDAFCKEGRMDD 80
               + LI +F +EG++ D
Sbjct: 149 IGVVSKLISSFPEEGKLID 167



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+     ++ +  EP++ TY T+I G C   R D+AV L+ ++     +PN + F  
Sbjct: 457 IDDAMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMG 516

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            I   CK  + + A + F +M E+  + +   Y  L+  +    N   AF++ ++M +  
Sbjct: 517 FIHGLCKCDKPEAALIHFHEMEEEEMEPDTYVYISLVSAFVNISNFPMAFEILKKMVDRR 576

Query: 128 ISPN 131
             P+
Sbjct: 577 NFPD 580



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + D+GL     T   ++  YC+  + DEA+ +F ++       ++  F+IL+ +F K G+
Sbjct: 1   MRDQGLSFSKYTLTPVLQVYCNAGKFDEALNVFNEIQ-DHGWLDAYVFSILVLSFSKWGQ 59

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133
           +D +     KM E+  + N  T+  LI G+ K   +     ++ +M +  +SP+I+    
Sbjct: 60  VDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDV 119

Query: 134 --------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                    +  +A+ LY  M    I PD  ++S L
Sbjct: 120 LIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKL 155



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 7/125 (5%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D + +   ++ ++    +  T+  +I G+   +R+D+ VQLF K+    L P+  
Sbjct: 56  KWGQVDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDIS 115

Query: 64  TFTILIDAFCKEGRMDDATMMFS--KMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            + +LI  FC   ++D A  +++  KML+  P   VV  S LI  + +   +    D+ E
Sbjct: 116 LYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVV--SKLISSFPEEGKL---IDILE 170

Query: 122 EMCEN 126
           E  E+
Sbjct: 171 ETLED 175



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D   KLF    D  + P+  +++ +I G     +LD AV LF+ +  +    + + +  L
Sbjct: 216 DVQYKLF---RDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNL 272

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I+  C   R++++  +  +M E G K    T + +     K Q++  A D+ ++M     
Sbjct: 273 INGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGC 332

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P +             G+  EA      M++ G  P+ +  S L
Sbjct: 333 EPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSAL 377



 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 50/103 (48%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A+ L+ ++  RG  P+ + +   I G C  ++ + A+  F ++   +++P+
Sbjct: 486 LCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEEEMEPD 545

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
           +  +  L+ AF        A  +  KM+++    + +  +C+I
Sbjct: 546 TYVYISLVSAFVNISNFPMAFEILKKMVDRRNFPDPLDKNCII 588


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 1/132 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL-TCVQLKP 60
           L K  ++  A  +  ++  RGL+P++ T+ T+I G C +   + A +LF KL      KP
Sbjct: 253 LCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKP 312

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  T+T++I  +C+EG++  A M+  +M+E+G K N  TY+ LI G+ K  +   AF++ 
Sbjct: 313 NVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELM 372

Query: 121 EEMCENNISPNI 132
            +M +    PNI
Sbjct: 373 NKMKQEGFLPNI 384



 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D A +L  ++   G  P+I TYN +I G+C   ++ EA ++    T   LK + IT+TI
Sbjct: 365 FDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTI 424

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   CK+G +  A  +F +M+E G   ++  Y+ LI  Y + + M+ +   +++     
Sbjct: 425 LITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 484

Query: 128 ISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLST 160
           + P        IAG     R T A+++++ M++NG   D +L+ +
Sbjct: 485 LLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSILMCS 529



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  L  A  L  ++ ++GL+P+  TY T+I G+C     D A +L  K+      PN  
Sbjct: 326 REGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIY 385

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  +ID FCK+G++ +A  +      +G K + +TY+ LI  + K  ++  A D+++ M
Sbjct: 386 TYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRM 445

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMP 153
            EN   P+I    +            E+ + +D  L  G++P
Sbjct: 446 VENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLP 487



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 13/159 (8%)

Query: 9   DAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           + A +LF +L      +P++ TY  +I GYC   +L  A  L  ++    LKPN+ T+T 
Sbjct: 295 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTT 354

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-- 125
           LI   CK G  D A  + +KM ++G   N+ TY+ +IDG+ K   ++ A+ V        
Sbjct: 355 LIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQG 414

Query: 126 ---NNISPNI-------AGRPTEAMQLYDSMLRNGIMPD 154
              + I+  I        G  T A+ L+D M+ NG  PD
Sbjct: 415 LKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 453



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 64/122 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+F  +T  G+ PD  ++  ++   C   +++E   L   +       ++ T T+++ 
Sbjct: 157 ARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVR 216

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
           + C++GR  D +  F +MLE G   NVV Y+  IDG  K + +K AF V EEM    + P
Sbjct: 217 SLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKP 276

Query: 131 NI 132
           N+
Sbjct: 277 NV 278



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           + F ++ + G  P+++ Y   I G C    + +A  + E++    LKPN  T T LID  
Sbjct: 229 EFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 288

Query: 73  CKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
           CK G  + A  +F K+++    K NV TY+ +I GY +   +  A  +   M E  + PN
Sbjct: 289 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 348

Query: 132 I------------AGRPTEAMQLYDSMLRNGIMPD 154
                         G    A +L + M + G +P+
Sbjct: 349 TNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPN 383



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 54/95 (56%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ H+  AL LF ++ + G  PDI  Y ++I  YC   +++E+ + F+K   + L P   
Sbjct: 431 KQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQ 490

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98
           T+T +I  +CK GR   A  +F +M++ G  A+ +
Sbjct: 491 TYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSI 525



 Score = 55.5 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E  ++    L   +   G   D  T   ++   C   R  +  + F ++  +   PN +
Sbjct: 185 REGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVV 244

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T  ID  CK   +  A  +  +M+ +G K NV T++ LIDG  K    + AF ++ ++
Sbjct: 245 NYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKL 304

Query: 124 CE-NNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + ++  PN+             G+   A  L   M+  G+ P+    +TL
Sbjct: 305 IKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTL 355


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--CVQLKPNSITFT 66
           DA   +  ++T  G  P++ +YN ++ G C  NR  EA++L + +        P+ +++T
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I+ F KEG +D A   + +ML++G   NVVTYS +I    K+Q M  A +V   M +N
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN 263

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
            + PN             +G+P EA+     M  +G+ PD +  ++L DY
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+++   +   G+ P+  TYN+I+ GYCS  +  EA+   +K+    ++P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  L+D  CK GR  +A  MF  M ++G K  + TY  L+ GY     +     + +
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 122 EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M  N I PN              G+  +AM ++  M + G+ PD +   T+
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 73/130 (56%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K      A K+F  +T RGL+P+I TY T++ GY +   L E   L + +    + PN
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              F+ILI A+ K+G++D A ++FSKM ++G   + VTY  +I    KS  ++ A   +E
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 122 EMCENNISPN 131
           +M +  +SP 
Sbjct: 434 QMIDERLSPG 443



 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             KE  LD A   + ++ DRG+ P+++TY++II   C    +D+A+++   +    + PN
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  ++  +C  G+  +A     KM   G + +VVTY+ L+D   K+     A  +++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            M +  + P I             G   E   L D M+RNGI P+  + S L
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 11  ALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           AL+L   + D G +  PD+++Y T+I G+     LD+A   + ++    + PN +T++ +
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I A CK   MD A  + + M++ G   N  TY+ ++ GY  S   K A    ++M  + +
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGV 300

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P++             GR TEA +++DSM + G+ P+     TL
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345



 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 53/198 (26%)

Query: 10  AALKLFGQLTDRG---LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           AA+  + ++   G   + P++ TY  +I   C   RLD        +     + ++I FT
Sbjct: 71  AAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFT 130

Query: 67  ILIDAFCKEGRMDDAT-MMFSKMLEKGPKAN----------------------------- 96
            L+   C + R  DA  ++  +M + G   N                             
Sbjct: 131 PLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPD 190

Query: 97  --------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT----------- 137
                   VV+Y+ +I+G+FK  ++  A+  Y EM +  I PN+    +           
Sbjct: 191 DGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAM 250

Query: 138 -EAMQLYDSMLRNGIMPD 154
            +AM++  SM++NG+MP+
Sbjct: 251 DKAMEVLTSMVKNGVMPN 268



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  +D A+ +F ++  +GL PD +TY T+I   C   R+++A++ FE++   +L P +I
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 64  TFTILIDAFCKEGRMDDATMMFSK 87
            +  LI + C   + D A   F K
Sbjct: 446 VYNSLIHSLCIFDKWDKAKDYFLK 469


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 12/152 (7%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA   F ++ D+GL P ++TY ++I GYC+     +A +++ ++T   + PN+ TFT +I
Sbjct: 280 AAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAII 339

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
              C+   M +A  +F +M E+    + VTY+ +I+G+ +S N+  AF + +EM      
Sbjct: 340 SGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFV 399

Query: 130 PNI------------AGRPTEAMQLYDSMLRN 149
           P+              GR +EA +  D + ++
Sbjct: 400 PDTYTYRPLISGLCSVGRVSEAKEFVDDLHKD 431



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A  L  ++  +G  PD  TY  +I G CS+ R+ EA +  + L     K N++ ++ 
Sbjct: 383 ISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSA 442

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  +CKEGR  DA      M+E+G   ++V Y+ LIDG  +  + ++ F + +EM  + 
Sbjct: 443 LVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHG 502

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + P+             AG   EA  L+D M+  G +P+ +  + L +
Sbjct: 503 LRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALIN 550



 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           LF ++ ++GL  + ITY+ +I  +C    +D A+   +K+T   ++     +  LI+ +C
Sbjct: 214 LFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYC 273

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K G    A   F +M++KG    VVTY+ LI GY        AF VY EM    ISPN  
Sbjct: 274 KLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTY 333

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                      A    EA++L+  M    IMP  +  + + + + +S    E
Sbjct: 334 TFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISE 385



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+    ++T   +E  +  YN++I GYC L     A   F+++    L P  +T+T 
Sbjct: 243 MDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTS 302

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI  +C EG    A  ++++M  KG   N  T++ +I G  ++  M  A  ++ EM E  
Sbjct: 303 LISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERK 362

Query: 128 ISPN------------IAGRPTEAMQLYDSMLRNGIMPD 154
           I P+             +G  +EA  L D M+  G +PD
Sbjct: 363 IMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPD 401



 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           +E    A   L  ++ + GL PD + Y  +I  +     L EA  L++ +      PN +
Sbjct: 484 REHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVV 543

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LI+  CK G MD A ++  + L      N +TY C +D   +  NM+ A  ++  M
Sbjct: 544 TYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAM 603

Query: 124 CENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172
            +  ++  ++           G+  EA +L   M  N I+PD +  ST+     + S  Q
Sbjct: 604 LKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQ 663

Query: 173 E 173
           E
Sbjct: 664 E 664



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 21/165 (12%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +  AL++   L  +GLE +++TY           + +EA  LF+++    L  N
Sbjct: 176 LCKSRRIWEALEIKNCLMQKGLEANVVTY---------YGKFNEAELLFKEMGEKGLCAN 226

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ILID+FC+ G MD+A     KM +   +  V  Y+ LI+GY K  N  +A   ++
Sbjct: 227 HITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFD 286

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
           EM +  ++P +             G   +A ++Y+ M   GI P+
Sbjct: 287 EMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPN 331



 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A  L+  + D G  P+++TY  +I G C    +D+A  L ++     + PN I
Sbjct: 519 KAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHI 578

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   +D   + G M+ A  +   ML KG  A  V+Y+ LI G+ +   ++ A  +   M
Sbjct: 579 TYGCFLDHLTRGGNMEKAVQLHHAML-KGFLATTVSYNILIRGFCRLGKIEEATKLLHGM 637

Query: 124 CENNISPNIAGRPT------------EAMQLYDSMLRNGIMPDGLLLSTLA 162
            +N+I P+     T            EA++L+ +ML  G+ PD L  S L 
Sbjct: 638 TDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLV 688



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +  +++ A++L   +  +G     ++YN +I G+C L +++EA +L   +T   + P+
Sbjct: 587 LTRGGNMEKAVQLHHAML-KGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPD 645

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            IT++ +I   CK   + +A  ++  ML+KG K + + YS L+ G   +  ++ AF++ +
Sbjct: 646 YITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRD 705

Query: 122 EMCENNISPN 131
           EM    +  N
Sbjct: 706 EMIRRGMRSN 715



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ A KL   +TD  + PD ITY+TII   C  + L EA++L+  +    LKP+++ ++ 
Sbjct: 627 IEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSF 686

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99
           L+   C  G ++ A  +  +M+ +G ++N VT
Sbjct: 687 LVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 38/198 (19%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++    +  L LF  +    ++PDI  Y+ ++   C L   ++A ++   +   Q K +
Sbjct: 106 LLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLS 165

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV----------------------- 98
            + + +LI   CK  R+ +A  + + +++KG +ANVV                       
Sbjct: 166 IVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCA 225

Query: 99  ---TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
              TYS LID + +   M +A    ++M + +I   +             G  + A   +
Sbjct: 226 NHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYF 285

Query: 144 DSMLRNGIMPDGLLLSTL 161
           D M+  G+ P  +  ++L
Sbjct: 286 DEMIDKGLTPTVVTYTSL 303



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 3   IKECHLDAALKLFGQ-----LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57
           +K  H+D  L +        + D  L P++ T + ++ G     R ++ + LF+ +    
Sbjct: 67  LKPSHVDKVLMMLSLNDSRLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSAN 126

Query: 58  LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           ++P+   ++ ++ + C+    + A  M   M     K ++V Y+ LI G  KS+ +  A 
Sbjct: 127 VQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEAL 186

Query: 118 DVYEEMCENNISPNIA---GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           ++   + +  +  N+    G+  EA  L+  M   G+  + +  S L D
Sbjct: 187 EIKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILID 235



 Score = 42.0 bits (97), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  +L  A+KL+  + D+GL+PD + Y+ ++ G C    L++A +L +++    ++ N +
Sbjct: 658 KRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHV 717

Query: 64  T 64
           T
Sbjct: 718 T 718


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 12/161 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+K+ +L +AL+L  ++  +  EP++ITY  +I G+C   RL+EA ++   ++   L  N
Sbjct: 387 LVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLN 446

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++ +  LI A CK+G +++A  +F +M  KG K ++ T++ LI+G  K+  M+ A  +Y 
Sbjct: 447 TVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYH 506

Query: 122 EMCENNISPNIAGRPT------------EAMQLYDSMLRNG 150
           +M    +  N     T            +A +L D ML  G
Sbjct: 507 DMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRG 547



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L+  +   G EPD  T+N +I G      L  A++L  ++   + +PN IT+TILI+ FC
Sbjct: 364 LYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFC 423

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133
           K+GR+++A  + + M  KG   N V Y+CLI    K  N++ A  ++ EM      P+I 
Sbjct: 424 KQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIY 483

Query: 134 ------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
                        +  EA+ LY  M   G++ + +  +TL    L     Q+
Sbjct: 484 TFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQ 535



 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+ +++ AL+LFG+++ +G +PDI T+N++I G C  ++++EA+ L+  +    +  N
Sbjct: 457 LCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIAN 516

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           ++T+  L+ AF     +  A  +  +ML +G   + +TY+ LI    K+  ++    ++E
Sbjct: 517 TVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFE 576

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           EM    I P I             G+  +A++    M+  G+ PD
Sbjct: 577 EMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPD 621



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 64/116 (55%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   ++ ALK    +  RGL PDI+TYN++I G C +  + EA  LF KL    ++P+
Sbjct: 597 LCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPD 656

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117
           +IT+  LI   C EG  +DA ++  K ++ G   N VT+S LI+   K     + F
Sbjct: 657 AITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVKKIPWGARF 712



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L +   +  A KL  ++  RG   D +TY  ++ G C + ++DEA  L  K+      PN
Sbjct: 285 LCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP----NPN 340

Query: 62  SITFTILIDAFCKEGRMDDAT-MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           ++ +  LI  +   GR ++A  ++++ M+  G + +  T++ +IDG  K   + SA ++ 
Sbjct: 341 TVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELL 400

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
            EM      PN+             GR  EA ++ +SM   G+
Sbjct: 401 NEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGL 443



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +  A KL  ++  RG   D ITYN +I   C    +++ + LFE++    + P  I+  I
Sbjct: 533 IQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNI 592

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LI   C+ G+++DA      M+ +G   ++VTY+ LI+G  K  +++ A +++ ++    
Sbjct: 593 LISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEG 652

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           I P+              G   +A  L    + +G +P+ +  S L +Y
Sbjct: 653 IRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINY 701



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D+A  L   +   G  P+ + Y T+I   C  NR+ EA+QL E +  +  +P+  TF  
Sbjct: 221 VDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFND 280

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   C+ GR+ +A  +  +ML +G   + +TY  L+ G  +   +  A  +  ++   N
Sbjct: 281 VIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPN 340

Query: 128 -------ISPNIA-GRPTEAMQ-LYDSMLRNGIMPDGLLLSTLAD 163
                  IS  +A GR  EA   LY++M+  G  PD    + + D
Sbjct: 341 TVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMID 385



 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 14/139 (10%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           EPD+ T+N +I G C   R+ EA +L +++       +++T+  L+   C+ G++D+A  
Sbjct: 272 EPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARA 331

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEMCENNISPNIAGRPTEAMQL 142
           + +K+    P  N V Y+ LI GY  S   + A D +Y  M        IAG   +A   
Sbjct: 332 LLNKI----PNPNTVLYNTLISGYVASGRFEEAKDLLYNNMV-------IAGYEPDAYTF 380

Query: 143 YDSMLRNGIMPDGLLLSTL 161
             +++ +G++  G L+S L
Sbjct: 381 --NIMIDGLVKKGYLVSAL 397



 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 61/103 (59%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   ++  L LF ++  +G+ P II+ N +I G C   ++++A++  + +    L P+
Sbjct: 562 LCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPD 621

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104
            +T+  LI+  CK G + +A+ +F+K+  +G + + +TY+ LI
Sbjct: 622 IVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLI 664



 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P   +YN ++      +    A  +F  +    + P   TF +++ A C    +D A  
Sbjct: 167 DPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACS 226

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM----CE------NNISPNI- 132
           +   M + G   N V Y  LI    ++  +  A  + E+M    CE      N++   + 
Sbjct: 227 LLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLC 286

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGL 156
            AGR  EA +L D ML  G   D L
Sbjct: 287 RAGRIHEAAKLLDRMLLRGFSTDAL 311


>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 756

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 69/124 (55%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L+ AL+ F  +  RG+ PD +TYNTII GYC   ++DEA +LF ++     +P+ +T+T
Sbjct: 269 RLETALRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYT 328

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +I  +    R+DD   +F +M   G + N  TYS L+ G      M  A ++ + M   
Sbjct: 329 TMIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMMAK 388

Query: 127 NISP 130
           +I+P
Sbjct: 389 HIAP 392



 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A + F ++   G+EP   TYN ++ G+    RL+ A++ F+ +    + P+++T+  +I+
Sbjct: 238 AKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFDDMKTRGISPDAVTYNTIIN 297

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C+  +MD+A  +F +M     + +VVTY+ +I GY     +     ++EEM    I P
Sbjct: 298 GYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFGIEP 357

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMP 153
           N              G+  EA  +  +M+   I P
Sbjct: 358 NATTYSTLLPGLCDVGKMVEAKNILKNMMAKHIAP 392



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++K+F ++ D G+E  I +YNT+        R   A + F K+    ++P   T+ +++ 
Sbjct: 203 SVKIFQKMKDLGVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLW 262

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            F    R++ A   F  M  +G   + VTY+ +I+GY + + M  A  ++ EM  NN  P
Sbjct: 263 GFFLSLRLETALRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEP 322

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           ++              R  + +++++ M   GI P+    STL
Sbjct: 323 SVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTL 365



 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 59/114 (51%)

Query: 18  LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77
           + ++G+  D   +  +I  Y     + E+V++F+K+  + ++    ++  L     + GR
Sbjct: 175 MPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNTLFKVILRRGR 234

Query: 78  MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131
              A   F+KM+ +G +    TY+ ++ G+F S  +++A   +++M    ISP+
Sbjct: 235 YMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFDDMKTRGISPD 288



 Score = 42.7 bits (99), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 72/155 (46%), Gaps = 27/155 (17%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKLT----------CVQLKPNSITFTILIDAFCKEGRMD 79
           Y  +I   C  +  + A++L + L            ++++P++  +  +I+  C  G+  
Sbjct: 433 YGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDTLEMEPSA--YNPIIEYLCNNGQTA 490

Query: 80  DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------ 133
            A ++F +++++G + +    + LI G+ K  N +S++++ + M    + P  A      
Sbjct: 491 KAEVLFRQLMKRGVQ-DQDALNNLIRGHAKEGNPESSYEILKIMSRRGV-PREANAYELL 548

Query: 134 -------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
                  G P +A    DSM+ +G +PD  L  ++
Sbjct: 549 IKSYMSKGEPGDAKTALDSMVEDGHVPDSALFRSV 583


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-CVQLKP 60
           L K   +  A ++  ++  +G +P++ T+  +I G C     ++A +LF KL      KP
Sbjct: 311 LCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKP 370

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N  T+T +I  +CKE +++ A M+ S+M E+G   N  TY+CLIDG+ K+ N + A+++ 
Sbjct: 371 NVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELM 430

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           + M +   S NI             GR  EA +L     R G+  D +  + L
Sbjct: 431 DLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTIL 483



 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL  F ++   G++PD+ TYNT+I  +    R++E+ +LF +   + L P   T+T +I 
Sbjct: 496 ALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMIC 555

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +C++  +  A   F++M + G   + +TY  LI G  K   +  A  +YE M +  +SP
Sbjct: 556 GYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSP 615

Query: 131 NIAGRPTEAMQ 141
               R T A +
Sbjct: 616 CEVTRLTLAYE 626



 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 65/122 (53%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  +F ++  RG+ PD ++Y  +   YC + R+ +  +  + +       ++ T T++I 
Sbjct: 215 AENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMIS 274

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            FC++G        F K +E G K N++ ++ LI+G  K  ++K AF++ EEM +    P
Sbjct: 275 TFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKP 334

Query: 131 NI 132
           N+
Sbjct: 335 NV 336



 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+     A KL  +    GL+ D +TY  +I   C      EA+  F K+    ++P+
Sbjct: 452 LCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPD 511

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T+  LI AF ++ RM+++  +F++ +  G      TY+ +I GY + +N+  A   + 
Sbjct: 512 MHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFN 571

Query: 122 EMCENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
            M ++  +P+       I+G     +  EA QLY++M+  G+ P  +   TLA
Sbjct: 572 RMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLA 624



 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K  + + A +L   +   G   +I TYN  I   C   R  EA +L +K   + L+ +++
Sbjct: 419 KAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTV 478

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+TILI   C+     +A + FSKM + G + ++ TY+ LI  + + + M+ +  ++ E 
Sbjct: 479 TYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEA 538

Query: 124 CENNISPN-------IAG-----RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
               + P        I G       + A++ ++ M  +G  PD L    L     + S  
Sbjct: 539 VGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKL 598

Query: 172 QEHC 175
            E C
Sbjct: 599 DEAC 602



 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 14/170 (8%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           +    +  RG   D  T   +I  +C           F+K   + LKPN I FT LI+  
Sbjct: 252 RWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGL 311

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-NNISPN 131
           CK G +  A  M  +M++KG K NV T++ LIDG  K    + AF ++ ++   ++  PN
Sbjct: 312 CKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPN 371

Query: 132 IAGRPTEAMQLYDSMLRNGIMPDGL-----LLSTLADYNLQSSGSQEHCI 176
           +          Y SM+      D L     LLS + +  L  +     C+
Sbjct: 372 V--------HTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCL 413



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           ++  ++ + KLF +    GL P   TY ++ICGYC    +  A++ F +++     P+S+
Sbjct: 524 RQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSL 583

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+  LI   CKE ++D+A  ++  M++KG     VT   L   Y K  +  +A  + E +
Sbjct: 584 TYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERL 643



 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           KE  L+ A  L  ++ ++GL P+  TY  +I G+      ++A +L + +       N  
Sbjct: 384 KEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIF 443

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+   ID+ CK+GR  +A  +  K    G +A+ VTY+ LI    +  + + A   + +M
Sbjct: 444 TYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKM 503

Query: 124 CENNISPNI 132
            +  + P++
Sbjct: 504 FKAGVQPDM 512



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  LD A +L+  + D+GL P  +T  T+   YC  +    A+ + E+L     K  
Sbjct: 592 LCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERL---DKKLW 648

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             T   LI   C E ++  A + F K+L+K    + VT +      ++S       D+ E
Sbjct: 649 IRTVNTLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTLTAFTTACYESNKYALVSDLSE 708

Query: 122 EM 123
            +
Sbjct: 709 RI 710


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L K  +L  A +L  ++   GL+PD ITY  +I  +C    L EA ++F  +    L P+
Sbjct: 1410 LCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPS 1469

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            ++TFT++I A+C+ G +  A   F KMLE+G + N +TY+ LI    +    + A   + 
Sbjct: 1470 AVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFH 1529

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EM E  +  N              G   +AM+ Y  M +NGI PD L    L
Sbjct: 1530 EMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKAL 1581



 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2    LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            L++   ++AA   F ++   GL PD+ITYN+++ GYC    L EA+ LF  L    L P 
Sbjct: 1235 LLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPT 1294

Query: 62   SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             +T+ ILID +C+ G +++A ++  +M E+G   NV TY+ L+ G    +++  A + ++
Sbjct: 1295 VLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFD 1354

Query: 122  EMCENNISPN------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            EM    + P+            I G    A +L + ++  GI  D +  + L
Sbjct: 1355 EMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNIL 1406



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 11   ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
            A +L   L   G+  D +TYN +I G C    L +A +L  K+    L+P+ IT+T LI 
Sbjct: 1384 AFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIH 1443

Query: 71   AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            A C+ G + +A  +F+ M+  G   + VT++ +I  Y +  N+ SA+  + +M E  + P
Sbjct: 1444 AHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 1503

Query: 131  N------------IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
            N              GR   A   +  ML  G++ +    + L D N
Sbjct: 1504 NEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGN 1550



 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 12/150 (8%)

Query: 17   QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76
            ++ + G+ P ++TYN +I G      ++ A   F ++  + L P+ IT+  L++ +CK G
Sbjct: 1215 EMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAG 1274

Query: 77   RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI---- 132
             + +A ++F  +   G    V+TY+ LIDGY +  +++ A  + EEM E    PN+    
Sbjct: 1275 NLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYT 1334

Query: 133  --------AGRPTEAMQLYDSMLRNGIMPD 154
                          A + +D ML  G+ PD
Sbjct: 1335 ILMKGSLNVRSLAMAREFFDEMLSKGLQPD 1364



 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 8    LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            L  A + F ++  +GL+PD   YNT IC    L  +  A +L E L    +  +++T+ I
Sbjct: 1346 LAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNI 1405

Query: 68   LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
            LI   CK G + DA  +  KM+  G + + +TY+CLI  + +   ++ A  ++  M  + 
Sbjct: 1406 LIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDG 1465

Query: 128  ISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            + P+              G    A   +  ML  G+ P+ +  + L
Sbjct: 1466 LLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVL 1511



 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 47/205 (22%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            K  +L  AL LFG L   GL P ++TYN +I GYC L  L+EA  L E++      PN  
Sbjct: 1272 KAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVC 1331

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPK----------------------------- 94
            T+TIL+        +  A   F +ML KG +                             
Sbjct: 1332 TYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVL 1391

Query: 95   ------ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRP 136
                  ++ VTY+ LI G  K+ N+K A ++  +M  N + P+              G  
Sbjct: 1392 MLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLL 1451

Query: 137  TEAMQLYDSMLRNGIMPDGLLLSTL 161
             EA +++++M+ +G++P  +  + +
Sbjct: 1452 REARKIFNNMISDGLLPSAVTFTVI 1476



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%)

Query: 4    KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
            +  +L +A   F ++ + G+EP+ ITYN +I   C + R   A   F ++    L  N  
Sbjct: 1482 RRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKY 1541

Query: 64   TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107
            T+T+LID  CK G  +DA   + +M + G   + +T+  L+ G+
Sbjct: 1542 TYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGF 1585



 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 12   LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA 71
            L  F ++   G+ PD+   N ++       R D+   + E++  + ++P+ +T+  L+D+
Sbjct: 1069 LSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDS 1128

Query: 72   FCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEM------ 123
            F KEGR D   M+  +M  +G     N VTY+ +I G  +  +++ A ++ E M      
Sbjct: 1129 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA 1188

Query: 124  CENNISPNIAGRPTEA--MQLYD---SMLRNGIMPDGLLLSTLADYNLQSSG 170
                 +P I G        ++YD    M   GIMP      T+  YN    G
Sbjct: 1189 SSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMP------TVVTYNAMIHG 1234



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 15/176 (8%)

Query: 2    LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
             +KE   D    L  ++  RG    P+ +TYN +I G      L+EA +L E +   + K
Sbjct: 1129 FLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-K 1187

Query: 60   PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
             +S T+  LI      G +     +  +M  +G    VVTY+ +I G  +S  +++A   
Sbjct: 1188 ASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVK 1247

Query: 120  YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + EM    + P++            AG   EA+ L+  + R G+ P  L  + L D
Sbjct: 1248 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILID 1303


>gi|357529169|sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g13630
          Length = 826

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL LF Q+   GL PD++ Y+ +I G C L + D A+ L++++   ++ PN
Sbjct: 415 LCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPN 474

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T   L+   C++G + +A  +   ++  G   ++V Y+ +IDGY KS  ++ A ++++
Sbjct: 475 SRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFK 534

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + E  I+P++A                EA ++ D +   G+ P  +  +TL D
Sbjct: 535 VVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMD 588



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A   F  +   GL P + ++N +I G C +  + EA++L   +    ++P+S+T+ I
Sbjct: 280 VDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNI 339

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L   F   G +  A  +   ML+KG   +V+TY+ L+ G  +  N+     + ++M    
Sbjct: 340 LAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRG 399

Query: 128 ISPNI-------------AGRPTEAMQLYDSMLRNGIMPD 154
              N               GR  EA+ L++ M  +G+ PD
Sbjct: 400 FELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPD 439



 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL+LF  + + G+ P + T+N++I GYC    + EA ++ + +    L P+ +++T 
Sbjct: 526 IEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTT 585

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA+   G       +  +M  +G     VTYS +  G  +            E C + 
Sbjct: 586 LMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWK--------HENCNHV 637

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +   I  +  + ++    M   GI PD +  +T+  Y
Sbjct: 638 LRERIFEKCKQGLR---DMESEGIPPDQITYNTIIQY 671



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           + + P ++++N+I+ GYC L  +D A   F  +    L P+  +  ILI+  C  G + +
Sbjct: 258 KDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAE 317

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           A  + S M + G + + VTY+ L  G+     +  A++V  +M +  +SP++
Sbjct: 318 ALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDV 369



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L   L   G   DI+ YN +I GY     ++EA++LF+ +    + P+  TF  LI 
Sbjct: 494 ARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIY 553

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK   + +A  +   +   G   +VV+Y+ L+D Y    N KS  ++  EM    I P
Sbjct: 554 GYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPP 613

Query: 131 N 131
            
Sbjct: 614 T 614



 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 12/138 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TY+T++ G C   +L++AV          + P+ ++F  ++  +CK G +D A   F  +
Sbjct: 231 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 290

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP------------NIAGRP 136
           L+ G   +V +++ LI+G     ++  A ++  +M ++ + P            ++ G  
Sbjct: 291 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 350

Query: 137 TEAMQLYDSMLRNGIMPD 154
           + A ++   ML  G+ PD
Sbjct: 351 SGAWEVIRDMLDKGLSPD 368



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD ITYNTII   C +  L  A    E +    L  +S T+ ILID+ C  G +  A
Sbjct: 657 GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKA 716

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPT---- 137
                 + E+    +   Y+ LI  +    + + A  ++ ++     + +I         
Sbjct: 717 DSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINR 776

Query: 138 --------EAMQLYDSMLRNGIMPD 154
                   E+   +  ML  GI PD
Sbjct: 777 LCRRHLVNESKFFFCLMLSQGISPD 801



 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 2/150 (1%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A      +  R L+    TYN +I   C    + +A      L    +  +   +T
Sbjct: 677 HLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYT 736

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            LI A C +G  + A  +F ++L +G   ++  YS +I+   +   +  +   +  M   
Sbjct: 737 TLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQ 796

Query: 127 NISP--NIAGRPTEAMQLYDSMLRNGIMPD 154
            ISP  +I     ++ +L    ++ G++PD
Sbjct: 797 GISPDLDICEVMIKSDELLSWTIKWGLLPD 826



 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/167 (18%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D +L +  ++ D+ L     +YN+++  +      D+   +++++       N  T++ 
Sbjct: 182 VDDSLYILKKMKDQNLNVSTQSYNSVLYHF---RETDKMWDVYKEIK----DKNEHTYST 234

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D  C++ +++DA +       K    +VV+++ ++ GY K   +  A   +  + +  
Sbjct: 235 VVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCG 294

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + P++             G   EA++L   M ++G+ PD +  + LA
Sbjct: 295 LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILA 341



 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+   +   GL P +++Y T++  Y +        +L  ++    + P ++T++++  
Sbjct: 564 ARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFK 623

Query: 71  AFCKEGRMDDAT-MMFSKMLEK-----------GPKANVVTYSCLIDGYFKSQNMKSAFD 118
             C+  + ++   ++  ++ EK           G   + +TY+ +I    + +++  AF 
Sbjct: 624 GLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFV 683

Query: 119 VYEEMCENNISPNIA 133
             E M   N+  + A
Sbjct: 684 FLEIMKSRNLDASSA 698


>gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 798

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D AL LF Q+   GL PD++ Y+ +I G C L + D A+ L++++   ++ PN
Sbjct: 373 LCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPN 432

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           S T   L+   C++G + +A  +   ++  G   ++V Y+ +IDGY KS  ++ A ++++
Sbjct: 433 SRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFK 492

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            + E  I+P++A                EA ++ D +   G+ P  +  +TL D
Sbjct: 493 VVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMD 546



 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A   F  +   GL P + ++N +I G C +  + EA++L   +    ++P+S+T+ I
Sbjct: 238 VDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNI 297

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L   F   G +  A  +   ML+KG   +V+TY+ L+ G  +  N+     + ++M    
Sbjct: 298 LAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRG 357

Query: 128 ISPNI-------------AGRPTEAMQLYDSMLRNGIMPD 154
              N               GR  EA+ L++ M  +G+ PD
Sbjct: 358 FELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPD 397



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ AL+LF  + + G+ P + T+N++I GYC    + EA ++ + +    L P+ +++T 
Sbjct: 484 IEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTT 543

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+DA+   G       +  +M  +G     VTYS +  G  +            E C + 
Sbjct: 544 LMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWK--------HENCNHV 595

Query: 128 ISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           +   I  +  + ++    M   GI PD +  +T+  Y
Sbjct: 596 LRERIFEKCKQGLR---DMESEGIPPDQITYNTIIQY 629



 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 60/112 (53%)

Query: 21  RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80
           + + P ++++N+I+ GYC L  +D A   F  +    L P+  +  ILI+  C  G + +
Sbjct: 216 KDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAE 275

Query: 81  ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
           A  + S M + G + + VTY+ L  G+     +  A++V  +M +  +SP++
Sbjct: 276 ALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDV 327



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A  L   L   G   DI+ YN +I GY     ++EA++LF+ +    + P+  TF  LI 
Sbjct: 452 ARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIY 511

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +CK   + +A  +   +   G   +VV+Y+ L+D Y    N KS  ++  EM    I P
Sbjct: 512 GYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPP 571



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 29  TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
           TY+T++ G C   +L++AV          + P+ ++F  ++  +CK G +D A   F  +
Sbjct: 189 TYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTV 248

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP------------NIAGRP 136
           L+ G   +V +++ LI+G     ++  A ++  +M ++ + P            ++ G  
Sbjct: 249 LKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMI 308

Query: 137 TEAMQLYDSMLRNGIMPDGLLLSTL 161
           + A ++   ML  G+ PD +  + L
Sbjct: 309 SGAWEVIRDMLDKGLSPDVITYTIL 333



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 50/111 (45%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+ PD ITYNTII   C +  L  A    E +    L  +S T+ ILID+ C  G +  A
Sbjct: 615 GIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKA 674

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132
                 + E+    +   Y+ LI  +    + + A  ++ ++     + +I
Sbjct: 675 DSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSI 725



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/167 (18%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D +L +  ++ D+ L     +YN+++  +      D+   +++++       N  T++ 
Sbjct: 140 VDDSLYILKKMKDQNLNVSTQSYNSVLYHF---RETDKMWDVYKEIK----DKNEHTYST 192

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           ++D  C++ +++DA +       K    +VV+++ ++ GY K   +  A   +  + +  
Sbjct: 193 VVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCG 252

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162
           + P++             G   EA++L   M ++G+ PD +  + LA
Sbjct: 253 LVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILA 299



 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 43/99 (43%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           HL  A      +  R L+    TYN +I   C    + +A      L    +  +   +T
Sbjct: 635 HLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYT 694

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105
            LI A C +G  + A  +F ++L +G   ++  YS +I+
Sbjct: 695 TLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVIN 733



 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A K+   +   GL P +++Y T++  Y +        +L  ++    + P ++T++++  
Sbjct: 522 ARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFK 581

Query: 71  AFCKEGRMDDAT-MMFSKMLEK-----------GPKANVVTYSCLIDGYFKSQNMKSAFD 118
             C+  + ++   ++  ++ EK           G   + +TY+ +I    + +++  AF 
Sbjct: 582 GLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFV 641

Query: 119 VYEEMCENNISPNIA 133
             E M   N+  + A
Sbjct: 642 FLEIMKSRNLDASSA 656


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +++A K+  ++   GL P+++TY TI+ GY +   ++ A ++ E++      P+
Sbjct: 201 LCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPD 260

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           + T+T+L+D +CK GR  +A  +   M +   + N VTY  +I    K +    A ++++
Sbjct: 261 ATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFD 320

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM E +  P+ +             +  EA  L+  ML+N  MPD  LLSTL  +
Sbjct: 321 EMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHW 375



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           +LI+    D    +F    +  G+ P+I T N ++   C  N ++ A ++ +++  + L 
Sbjct: 164 VLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLV 223

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN +T+T ++  +   G M+ A  +  +ML++G   +  TY+ L+DGY K      A  V
Sbjct: 224 PNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATV 283

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            ++M +N I PN               +  EA  ++D ML    MPD  L   + D   +
Sbjct: 284 MDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCE 343

Query: 168 SSGSQEHC 175
                E C
Sbjct: 344 DHKVDEAC 351



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D A  L+ ++      PD    +T+I   C   R+ EA +LF++     + P+
Sbjct: 341 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSI-PS 399

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   C++G + +A  ++  M E+  K N  TY+ LI+G  K+ N+K    V E
Sbjct: 400 LLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLE 459

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM E    PN     T  + L++ + + G   D + + ++A  N
Sbjct: 460 EMLEIGCFPN----KTTFLILFEGLQKLGKEEDAMKIVSMAVMN 499



 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L KE  +  A KLF +  ++G  P ++TYNT+I G C    L EA +L++ +   + KP
Sbjct: 375 WLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKP 433

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           N+ T+ +LI+   K G + +   +  +MLE G   N  T+  L +G
Sbjct: 434 NAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEG 479



 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A  +F ++ +R   PD      +I   C  +++DEA  L+ K+      P+
Sbjct: 306 LCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPD 365

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +   + LI   CKEGR+ +A  +F +  EKG   +++TY+ LI G  +   +  A  +++
Sbjct: 366 NALLSTLIHWLCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWD 424

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E    PN              G   E +++ + ML  G  P+      L +  LQ  
Sbjct: 425 DMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFE-GLQKL 483

Query: 170 GSQE 173
           G +E
Sbjct: 484 GKEE 487



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 48/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A ++  ++ DRG  PD  TY  ++ GYC L R  EA  + + +   +++PN +T+ +
Sbjct: 242 MESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGV 301

Query: 68  LI-----------------------------------DAFCKEGRMDDATMMFSKMLEKG 92
           +I                                   DA C++ ++D+A  ++ KML+  
Sbjct: 302 MIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNN 361

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
              +    S LI    K   +  A  +++E  + +I P++             G  TEA 
Sbjct: 362 CMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSI-PSLLTYNTLIAGMCEKGELTEAG 420

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
           +L+D M      P+    + L +
Sbjct: 421 RLWDDMYERKCKPNAFTYNVLIE 443



 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A +L+  + +R  +P+  TYN +I G      + E V++ E++  +   PN  TF 
Sbjct: 415 ELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFL 474

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKG 92
           IL +   K G+ +DA  + S  +  G
Sbjct: 475 ILFEGLQKLGKEEDAMKIVSMAVMNG 500


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           L K   +    +LF ++  R    PDI+TY +II G+C   ++ EA  LFE++    ++P
Sbjct: 223 LCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQP 282

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           N ITF +LID F K G + +A  M+ KM      A+VVT++ LIDGY ++  +      +
Sbjct: 283 NVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFW 342

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
             M   N+SP +              R  EA      +  + I+P   + + + D
Sbjct: 343 NVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVID 397



 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            D   KL  ++  + +  +   YN ++      N++ EA+ LF++   +Q  P++ TF I
Sbjct: 124 FDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNI 183

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM-CEN 126
           LI   C+ G +D A  +F  M   G   +VVTY+ LI+G  K+  ++   ++++E+   +
Sbjct: 184 LIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRS 243

Query: 127 NISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           + SP+I            +G+  EA  L++ M+R+GI P+ +  + L D
Sbjct: 244 DCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLID 292



 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
           +L+K+  +  A+ LF +       PD  T+N +I G C +  +D A ++F+ +      P
Sbjct: 152 VLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLP 211

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDV 119
           + +T+  LI+  CK   +     +F ++  +     ++VTY+ +I G+ KS  MK A ++
Sbjct: 212 DVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNL 271

Query: 120 YEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +EEM  + I PN+             G   EA  +Y  M       D +  ++L D
Sbjct: 272 FEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLID 327



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           D++T+ ++I GYC   +++  ++ +  +    + P   T+ +LI+A CKE R+++A    
Sbjct: 318 DVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFL 377

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN------------IA 133
            ++           Y+ +IDG+ K+ N+     + +EM E    P+            + 
Sbjct: 378 GQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVK 437

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           GR  EA+ +++ ML     PD + +++L
Sbjct: 438 GRMFEAINIFNRMLATRCAPDNITVNSL 465



 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++  LK +  +  R + P + TY  +I   C  NRL+EA     ++    + P    + 
Sbjct: 334 QVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYN 393

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
            +ID FCK G +D+  ++  +M EK    + VT++ LI G+     M  A +++  M   
Sbjct: 394 PVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLAT 453

Query: 127 NISP-NI-----------AGRPTEAMQL 142
             +P NI           AG P EA ++
Sbjct: 454 RCAPDNITVNSLISCLLKAGMPNEAYRI 481



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  L+ A    GQ+ +  + P    YN +I G+C    +DE   + +++   +  P+
Sbjct: 364 LCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPD 423

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +TFTILI   C +GRM +A  +F++ML      + +T + LI    K+     A+ + +
Sbjct: 424 KVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIRK 483

Query: 122 EMCEN 126
              E+
Sbjct: 484 MALED 488


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+ ++++A  LF +L + GL P    YN++I G+ +L  +  A+ L++K+    L+ +  
Sbjct: 665 KKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLG 724

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T+T LID   KEG +  A+ ++++M   G   + + Y+ +++G  K         ++EEM
Sbjct: 725 TYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEM 784

Query: 124 CENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            +NN++PN+             G   EA +L+D ML  GI+PDG     L
Sbjct: 785 KKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 834



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 95/174 (54%), Gaps = 12/174 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
            IKE  +D A+  + ++   G+ P++ITY +++ G C  NR+D+A+++ +++    +K +
Sbjct: 593 FIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLD 652

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              +  LI  FCK+  M+ A+ +FS++LE+G   +   Y+ LI G+    NM +A D+Y+
Sbjct: 653 IPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYK 712

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
           +M ++ +  ++             G    A  LY  M   G++PD ++ + + +
Sbjct: 713 KMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVN 766



 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 28  ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87
           ++YN+II G+     +D AV  +E++    + PN IT+T L+D  CK  RMD A  M  +
Sbjct: 584 MSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDE 643

Query: 88  MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GR 135
           M  KG K ++  Y  LI G+ K  NM+SA  ++ E+ E  ++P+              G 
Sbjct: 644 MKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGN 703

Query: 136 PTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
              A+ LY  ML++G+  D    +TL D
Sbjct: 704 MVAALDLYKKMLKDGLRCDLGTYTTLID 731



 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + ALKLF +  + GL  ++   NTI+   C   ++D+A +L  K+    + PN +++  +
Sbjct: 425 EEALKLFDESFETGL-ANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNV 483

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           + A C++  MD A  +FS MLEKG K N  TYS LIDG FK+ + ++  +V  +M  +NI
Sbjct: 484 MLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNI 543

Query: 129 SPN 131
             N
Sbjct: 544 EVN 546



 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 48/202 (23%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L K+  +D A +L  ++  RG+ P++++YN ++  +C    +D A  +F  +    LKP
Sbjct: 451 WLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKP 510

Query: 61  NSITFTILID-----------------------------------AFCKEGRMDDATMMF 85
           N+ T++ILID                                     CK G+   A  + 
Sbjct: 511 NNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELL 570

Query: 86  SKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133
           + M+ EK    + ++Y+ +IDG+ K   M  A   YEEMC N ISPN+            
Sbjct: 571 ANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCK 630

Query: 134 -GRPTEAMQLYDSMLRNGIMPD 154
             R  +A+++ D M   G+  D
Sbjct: 631 NNRMDQALEMRDEMKNKGVKLD 652



 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           +K+ +++ A++   ++   G+  +++   ++I G+C  N L  A+ LF K+      PNS
Sbjct: 314 VKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNS 373

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +TF++LI+ F K G M+ A   + KM   G   +V     +I G+ K Q  + A  +++E
Sbjct: 374 VTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDE 433

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             E  ++ N+             G+  +A +L   M   GI P+
Sbjct: 434 SFETGLA-NVFICNTILSWLCKQGKIDKATELLRKMESRGIGPN 476



 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62
           K  +L  A  L  ++ ++ L  P   TY ++I        +++A++  +++    +  N 
Sbjct: 279 KTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNV 338

Query: 63  ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122
           +  T LI   CK   +  A  +F KM  +GP  N VT+S LI+ + K+  M+ A + Y++
Sbjct: 339 VAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKK 398

Query: 123 MCENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
           M    ++P++              +  EA++L+D     G+
Sbjct: 399 MESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGL 439



 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L+KE +L  A  L+ ++   GL PD I Y  I+ G     +  + V++FE++    + PN
Sbjct: 733 LLKEGNLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPN 792

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSA 116
            + +  +I    +EG +D+A  +  +ML+KG   +  T+  L+ G   K Q +++A
Sbjct: 793 VLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGKVGKFQPIRAA 848



 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 62/125 (49%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+   D A+ +  Q+ + G+ P +   N  +      N + EA +L+ ++  + +  ++ 
Sbjct: 174 KDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSRMVAIGVDGDNG 233

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T  +L+ A  +E +  +A  +FS+ +E+G + + + YS  +    K+ N+  A  +  EM
Sbjct: 234 TTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREM 293

Query: 124 CENNI 128
            E  +
Sbjct: 294 KEKKL 298



 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 48/220 (21%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L++   +  A +L+ ++   G++ D  T   ++       +  EA+++F +      +P+
Sbjct: 207 LVQRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPD 266

Query: 62  SITFTILIDAFC------------------------------------KEGRMDDATMMF 85
           S+ +++ + A C                                    K+G M+DA    
Sbjct: 267 SLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWK 326

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133
            +M+  G   NVV  + LI G+ K+ ++ SA D++ +M     SPN              
Sbjct: 327 DEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKN 386

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173
           G   +A++ Y  M   G+ P    + T+    L+    +E
Sbjct: 387 GEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEE 426


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 12/162 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L G++   G+ P I+T+ ++I   C LN  ++A+Q+F ++  +++KP++  +T++I   C
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI- 132
           K  ++D A   F +M++ G   + VTY+ L+   FK+   +    ++EEM     SP + 
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120

Query: 133 -----------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                      AGR  +A+ L   +   G  P G L STL D
Sbjct: 121 TYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 162



 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 65/104 (62%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P ++TY+ +I G C  +RLD+A  + +K+      P+ +T+T +IDAFCK GR+D+A  +
Sbjct: 291 PSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEAREL 350

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           F +M E+G  ++VV Y+ LI GY ++  +  A  + EEM    I
Sbjct: 351 FQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K C  +   ++F ++  +G  P+++TY T++ GYC   R+D+A+ L  +L      P+
Sbjct: 94  LFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPS 153

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
              ++ LID  CK  R ++A  +F   +  G   +V+ Y+  I G  K+  +  A  V+ 
Sbjct: 154 GSLYSTLIDGLCKHDRHEEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHV 211

Query: 122 EMCENNISPNIAG------------RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E   +P+               R +EA +L D  +    MP   + + L D   +S 
Sbjct: 212 KMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSR 271

Query: 170 GSQEHCI 176
             +E C+
Sbjct: 272 RVEEACV 278



 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   LD A  +  ++ + G  PD ++YN II   C  NR+ EA +L ++    +  P 
Sbjct: 197 LCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPG 256

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVY 120
               T+L+D  CK  R+++A ++  +MLE G +A +VVTYS +IDG  K+  +  A+ V 
Sbjct: 257 VPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVL 316

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           ++M      P++             GR  EA +L+  M   G   D
Sbjct: 317 QKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASD 362



 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEK-LTCVQLKP 60
           L K+  +  A +L  Q  +R   P +     ++ G C   R++EA  + E+ L      P
Sbjct: 232 LCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAP 291

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
           + +T++ +ID  CK  R+DDA ++  KM   G   +VVTY+ +ID + K   +  A +++
Sbjct: 292 SVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELF 351

Query: 121 EEMCENNISPNI------------AGRPTEAMQLYDSMLRNGI 151
           + M E   + ++            A +  EA+ + + M   GI
Sbjct: 352 QRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 12/158 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           LD A   F Q+   G  PD +TY  ++       + ++  Q+FE++      P  +T+  
Sbjct: 65  LDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYAT 124

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +++ +CK GR+D A  +  ++   G   +   YS LIDG  K    + A +++ EM   +
Sbjct: 125 VVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGD 183

Query: 128 ISPNI-----------AGRPTEAMQLYDSMLRNGIMPD 154
           +   I           AG+  EA  ++  M+  G  PD
Sbjct: 184 VQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPD 221


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 12/165 (7%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           + AL +FG+L   GL PD+ +YNT+I G+     +D+A +LF K+    + P+ +T+  L
Sbjct: 46  ELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSL 105

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           ID  CK   M  +  +  +M++ G + N  TY+ LI GY  +   K +  V++EM  + +
Sbjct: 106 IDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGL 165

Query: 129 SPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
            P +              R  EA  ++DSM+  G  P+ +  STL
Sbjct: 166 IPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTL 210



 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 18/164 (10%)

Query: 13  KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72
           ++  Q+ D G+ P+  TYN++I GY +     E+V++F++++   L P  +     I A 
Sbjct: 120 RVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHAL 179

Query: 73  CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS---QNMKSAFDVYEEMCENNIS 129
           C+  R+ +A  +F  M+ KGPK N+++YS L+ GY       NM S  ++   M    I 
Sbjct: 180 CRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNL---MVSKGIV 236

Query: 130 PNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           PN              G   +AM +++ M   G++PD +  +T+
Sbjct: 237 PNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 280



 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 39/182 (21%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D A+ +F  + ++G+ PD +T+ T+I   C + RLD+A+  F  +  + + P+   +  
Sbjct: 255 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRC 314

Query: 68  LIDAFC------------------------------------KEGRMDDATMMFSKMLEK 91
           LI   C                                    KEGR+ +   +   M++ 
Sbjct: 315 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQT 374

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFD---VYEEMCENNISPNIAGRPTEAMQLYDSMLR 148
           G + NVVT++ L++GY    NM+ A     ++ ++  N I   +A R T A +++  M+ 
Sbjct: 375 GQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIE 434

Query: 149 NG 150
           +G
Sbjct: 435 SG 436



 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 14  LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73
           L   +  +G+ P+   +N +I  Y     +D+A+ +FE +    + P+++TF  +I + C
Sbjct: 226 LVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 285

Query: 74  KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP--- 130
           + GR+DDA   F+ M++ G   +   Y CLI G      +  A ++  EM   +I P   
Sbjct: 286 RIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 345

Query: 131 --------NI--AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
                   N+   GR  E   + D M++ G  P+ +  ++L +
Sbjct: 346 KYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLME 388



 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           ++++F +++  GL P ++  N+ I   C  NR+ EA  +F+ +     KPN I+++ L+ 
Sbjct: 153 SVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLH 212

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
            +  EG   +   + + M+ KG   N   ++ LI+ Y +   M  A  ++E+M    + P
Sbjct: 213 GYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIP 272

Query: 131 NIA------------GRPTEAMQLYDSMLRNGIMP 153
           +              GR  +A+  ++ M+  G+ P
Sbjct: 273 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPP 307



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 65/122 (53%)

Query: 10  AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69
           AA K+F ++ + G    I TY  ++ G C  N  DEA  L EKL  + +K + ITF I+I
Sbjct: 424 AAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVI 483

Query: 70  DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129
            A  K GR  +A  +F+ +   G    V TY+ +I    K ++ + A +++  + ++  +
Sbjct: 484 SAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRA 543

Query: 130 PN 131
           P+
Sbjct: 544 PD 545



 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/203 (17%), Positives = 81/203 (39%), Gaps = 46/203 (22%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV-------------- 47
           L KE  +     +   +   G  P+++T+N+++ GYC +  ++EA+              
Sbjct: 355 LFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRI 414

Query: 48  ----------------QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91
                           ++ E  T V ++    T+ +++   C+    D+A M+  K+   
Sbjct: 415 VTYMARRTTAAKKMFHEMIESGTTVSIQ----TYGVVLGGLCRNNCTDEANMLLEKLFAM 470

Query: 92  GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------RPTEA 139
             K +++T++ +I    K    + A +++  +    + P +                 EA
Sbjct: 471 NVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEA 530

Query: 140 MQLYDSMLRNGIMPDGLLLSTLA 162
             L+ S+ ++G  PD  LL+ + 
Sbjct: 531 DNLFISVEKSGRAPDSRLLNHIV 553



 Score = 43.1 bits (100), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 55/121 (45%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68
           D A  L  +L    ++ DIIT+N +I     + R  EA +LF  ++   L P   T+ ++
Sbjct: 458 DEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLM 517

Query: 69  IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128
           I    KE   ++A  +F  + + G   +    + ++    K   +  A +    + ENN+
Sbjct: 518 ISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNL 577

Query: 129 S 129
           +
Sbjct: 578 T 578


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 24  EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83
           +P+++TY  ++ G C  +++ +A  L E +     +PN+I +  LID FCK  ++D+A  
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 84  MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +F KM+E G   NV TYS LID  FK + +     V  +M EN+ +PNI           
Sbjct: 702 VFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
              +  EA +L   M   G  P+ +  + + D     +G  + C+
Sbjct: 762 KVAKTDEAYKLMLMMEEKGCKPNVVTYTAMID-GFGKAGKVDKCL 805



 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G EP+ I Y+ +I G+C   +LDEA ++F K+      PN  T++ LID   K+ R+D  
Sbjct: 675 GCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLV 734

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             + SKMLE     N+V Y+ +IDG  K      A+ +   M E    PN+         
Sbjct: 735 LKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDG 794

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
              AG+  + ++L+  M   G  P+ +  + L ++
Sbjct: 795 FGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINH 829



 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
            + A K+  ++   G  PD  TY+ +I   C+ +R++ A  LF+++    + P+  T+TI
Sbjct: 470 FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTI 529

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           LID F K G +  A     +M+  G +  VVTY+ LI  Y K++ +  A +++E M    
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKG 589

Query: 128 ISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
             PN+            +G   +A Q+Y  M  +  +PD
Sbjct: 590 CFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628



 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 69/130 (53%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   LD A ++F ++ + G  P++ TY+++I       RLD  +++  K+      PN +
Sbjct: 692 KAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIV 751

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            +T +ID   K  + D+A  +   M EKG K NVVTY+ +IDG+ K+  +    +++ EM
Sbjct: 752 IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREM 811

Query: 124 CENNISPNIA 133
                +PN  
Sbjct: 812 GSKGCAPNFV 821



 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  LD  LK+  ++ +    P+I+ Y  +I G   + + DEA +L   +     KPN
Sbjct: 725 LFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPN 784

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+T +ID F K G++D    +F +M  KG   N VTY+ LI+    + ++  A+ + E
Sbjct: 785 VVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLE 844

Query: 122 EMCENNISPNIA-------GRPTE---AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171
           EM +     +++       G   E   ++ L + + +NG  P  LL   L D N   +G 
Sbjct: 845 EMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLID-NFVKAGR 903

Query: 172 QE 173
            E
Sbjct: 904 LE 905



 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 28/185 (15%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            ++ A  LF ++   G+ PD+ TY  +I  +     + +A    +++     +P  +T+T
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--- 123
            LI A+ K  ++  A  +F  M+ KG   NV+TY+ LIDGY KS N++ A  +Y  M   
Sbjct: 564 TLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGD 623

Query: 124 -----------CENNIS--PNI------------AGRPTEAMQLYDSMLRNGIMPDGLLL 158
                       +NN++  PN+            A +  +A  L ++M  +G  P+ ++ 
Sbjct: 624 ADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVY 683

Query: 159 STLAD 163
             L D
Sbjct: 684 DALID 688



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 47/200 (23%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K    D A KL   + ++G +P+++TY  +I G+    ++D+ ++LF ++      PN
Sbjct: 760 LSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPN 819

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKM--------------------------------L 89
            +T+T+LI+  C  G +D+A  +  +M                                +
Sbjct: 820 FVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEV 879

Query: 90  EKGPKANVVT-YSCLIDGYFKSQNMKSAFDVYEEMCENNISP--------------NIAG 134
           EK   A ++  Y  LID + K+  ++ A ++++E+   ++S               + A 
Sbjct: 880 EKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYAS 939

Query: 135 RPTEAMQLYDSMLRNGIMPD 154
           +   A +L+  M+R+G++PD
Sbjct: 940 KIGHAFELFYDMIRDGVIPD 959



 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 79/162 (48%), Gaps = 15/162 (9%)

Query: 26  DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85
           +++++   +CG+    + ++A ++  ++      P++ T++ +I   C   R+++A  +F
Sbjct: 456 NVVSFARCLCGF---GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLF 512

Query: 86  SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------A 133
            +M   G   +V TY+ LID + K+  +K A +  +EM  +   P +            A
Sbjct: 513 KEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKA 572

Query: 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175
            + + A +L++ M+  G  P+ +  + L D   +S   ++ C
Sbjct: 573 KKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKAC 614



 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 51/192 (26%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT--------- 54
           K   +D  L+LF ++  +G  P+ +TY  +I   C+   LDEA  L E++          
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVS 856

Query: 55  --CVQLK----------------------PNSITFTILIDAFCKEGRMDDATMMFSKMLE 90
             C  ++                      P  + + +LID F K GR++ A  +  +++ 
Sbjct: 857 SYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVIS 916

Query: 91  K----GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAG------------ 134
                  K N+  Y+ LI  +  +  +  AF+++ +M  + + P++              
Sbjct: 917 ASMSMAAKKNL--YTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVR 974

Query: 135 RPTEAMQLYDSM 146
           R  EA+QL DS+
Sbjct: 975 RWEEALQLSDSL 986



 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 7/136 (5%)

Query: 1   MLIKEC----HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56
           +LI++C      + AL+  G+L D G +P  +TYN ++  +   ++LD A  +  +++ +
Sbjct: 211 VLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSEL 270

Query: 57  QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116
            L  +  T      A CK G+  +A  +  K   +    N + Y+ +I G  ++   + A
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNKMISGLCEASFFEEA 327

Query: 117 FDVYEEMCENNISPNI 132
            D    M   +  PN+
Sbjct: 328 MDFLNRMRSTSCIPNV 343



 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 59/212 (27%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICG------------------------------- 36
            + A+    ++      P++ TY  ++CG                               
Sbjct: 324 FEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNS 383

Query: 37  ----YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM------DDATMMFS 86
               YC  +    A +L +K+   + KP  + + ILI + C  G +      + A   ++
Sbjct: 384 LVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYN 443

Query: 87  KMLEKGP---KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------- 132
           +ML  G    K NVV+++  + G+ K    + A+ V  EM  N   P+            
Sbjct: 444 EMLSAGTVLNKVNVVSFARCLCGFGK---FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500

Query: 133 -AGRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163
            A R   A  L+  M   G++PD    + L D
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILID 532



 Score = 43.9 bits (102), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 25  PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84
           P+ I YN +I G C  +  +EA+    ++      PN  T+ IL+     + ++     +
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365

Query: 85  FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM--CE 125
            S M+ +G   +   ++ L+  Y KS +   A+ + ++M  CE
Sbjct: 366 LSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCE 408


>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 369

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 53/207 (25%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           AL++  ++ DRG+ P+++TY+++I G C   RL +A +   ++   ++ PN ITF+ LID
Sbjct: 67  ALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALID 126

Query: 71  AFCKEG-----------------------------------RMDDATMMFSKMLEKGPKA 95
           A+ K G                                   R+D+A  M   M+ KG   
Sbjct: 127 AYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTP 186

Query: 96  NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLY 143
           NVVTYS L +G+FKS  +     + ++M +  ++ N             AG+   A+ ++
Sbjct: 187 NVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVF 246

Query: 144 DSMLRNGIMPDGLLLSTLADYNLQSSG 170
             M  NG++P+      +  YN+  +G
Sbjct: 247 GYMTSNGLIPN------IRSYNIVLAG 267



 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 3/129 (2%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K   +D+  K+  Q++   ++P++ TY+++I G C  NR+DEA+++ + +      PN +
Sbjct: 133 KLSKVDSVYKMMIQMS---IDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVV 189

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
           T++ L + F K  R+DD   +   M ++G  AN V+ + LI GYF++  +  A  V+  M
Sbjct: 190 TYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYM 249

Query: 124 CENNISPNI 132
             N + PNI
Sbjct: 250 TSNGLIPNI 258



 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 12/171 (7%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A+ + GQ+   G++ D++    +I   C    +  A+++ +++    + PN +T++ LI 
Sbjct: 32  AVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLIT 91

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
             CK GR+ DA     +M  K    NV+T+S LID Y K   +     VY+ M + +I P
Sbjct: 92  GLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDP 151

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           N+              R  EA+++ D M+  G  P+ +  STLA+   +SS
Sbjct: 152 NVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSS 202



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 12/152 (7%)

Query: 22  GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81
           G+EPDI+T ++++ G+C  N + +AV +  ++  + +K + +  TILID  CK   +  A
Sbjct: 8   GIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPA 67

Query: 82  TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--------- 132
             +  +M ++G   NVVTYS LI G  KS  +  A     EM    I+PN+         
Sbjct: 68  LEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDA 127

Query: 133 ---AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
               G+ ++   +Y  M++  I P+    S+L
Sbjct: 128 YAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSL 159



 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 64/117 (54%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            +D A+K+   +  +G  P+++TY+T+  G+   +R+D+ ++L + +    +  N+++  
Sbjct: 168 RVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCN 227

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
            LI  + + G++D A  +F  M   G   N+ +Y+ ++ G F +  ++ A   +E M
Sbjct: 228 TLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHM 284



 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
             K   +D  +KL   +  RG+  + ++ NT+I GY    ++D A+ +F  +T   L PN
Sbjct: 198 FFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPN 257

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
             ++ I++      G ++ A   F  M +     +++TY+ +I G  K+  +K A+D++ 
Sbjct: 258 IRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFY 317

Query: 122 EMCENNISP------------NIAGRPTEA 139
           ++    + P            N AG  TEA
Sbjct: 318 KLKFKRVEPDFKAYTIMIAELNRAGMRTEA 347



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +D AL +FG +T  GL P+I +YN ++ G  +   +++A+  FE +   +   + IT+TI
Sbjct: 239 IDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTI 298

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CK   + +A  +F K+  K  + +   Y+ +I        M++  D      + +
Sbjct: 299 MIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMI-AELNRAGMRTEADALNRFYQKH 357

Query: 128 ISPN 131
           +  N
Sbjct: 358 VRQN 361



 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 12/124 (9%)

Query: 52  KLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111
           K+  + ++P+ +T + L++ FC    + DA  +  +M + G K +VV  + LID   K++
Sbjct: 3   KMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR 62

Query: 112 NMKSAFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLS 159
            +  A +V + M +  ISPN+            +GR  +A +    M    I P+ +  S
Sbjct: 63  LVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFS 122

Query: 160 TLAD 163
            L D
Sbjct: 123 ALID 126


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K+  +++A K+  ++   GL P+++TY TI+ GY +   ++ A ++ E++      P+
Sbjct: 199 LCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPD 258

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +IT+T+L+D +CK GR  +A  +   M +   + N VTY  +I    K +    A ++++
Sbjct: 259 AITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFD 318

Query: 122 EMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADY 164
           EM + +  P+ +             +  EA  L+  ML+N  MPD  LLSTL  +
Sbjct: 319 EMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHW 373



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 1   MLIKECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59
           +LI+    D    +F    +  G+ P+I T N ++   C  N ++ A ++ +++  + L 
Sbjct: 162 VLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLV 221

Query: 60  PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119
           PN +T+T ++  +   G M+ A  +  +ML++G   + +TY+ L+DGY K      A  V
Sbjct: 222 PNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATV 281

Query: 120 YEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167
            ++M +N I PN               +  EA  ++D ML    MPD  L   + D   +
Sbjct: 282 MDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCE 341

Query: 168 SSGSQEHC 175
                E C
Sbjct: 342 DHKVDEAC 349



 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L ++  +D A  L+ ++      PD    +T+I   C   R+ EA +LF++     + P+
Sbjct: 339 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSI-PS 397

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
            +T+  LI   C++G + +A  ++  M E+  K N  TY+ LI+G  K+ N+K    V E
Sbjct: 398 LLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLE 457

Query: 122 EMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165
           EM E+   PN     T  + L++ + + G   D + + ++A  N
Sbjct: 458 EMLESGCFPN----KTTFLILFEGLQKLGKEEDAIKIVSMAVMN 497



 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 1   MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
            L KE  +  A KLF +  D+G  P ++TYNT+I G C    L EA +L++ +   + KP
Sbjct: 373 WLCKEGRVSEARKLFDEF-DKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKP 431

Query: 61  NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106
           N+ T+ +LI+   K G + +   +  +MLE G   N  T+  L +G
Sbjct: 432 NAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEG 477



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 14/187 (7%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE     A  +F ++ DR   PD      +I   C  +++DEA  L+ K+      P+
Sbjct: 304 LCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPD 363

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121
           +   + LI   CKEGR+ +A  +F +  +KG   +++TY+ LI G  +   +  A  +++
Sbjct: 364 NALLSTLIHWLCKEGRVSEARKLFDE-FDKGSIPSLLTYNTLIAGMCEKGELTEAGRLWD 422

Query: 122 EMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169
           +M E    PN              G   E +++ + ML +G  P+      L +  LQ  
Sbjct: 423 DMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFE-GLQKL 481

Query: 170 GSQEHCI 176
           G +E  I
Sbjct: 482 GKEEDAI 488



 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 48/203 (23%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           +++A ++  ++ DRG  PD ITY  ++ GYC L R  EA  + + +   +++PN +T+ +
Sbjct: 240 MESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGV 299

Query: 68  LI-----------------------------------DAFCKEGRMDDATMMFSKMLEKG 92
           +I                                   DA C++ ++D+A  ++ KML+  
Sbjct: 300 MIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNN 359

Query: 93  PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAM 140
              +    S LI    K   +  A  +++E  + +I P++             G  TEA 
Sbjct: 360 CMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSI-PSLLTYNTLIAGMCEKGELTEAG 418

Query: 141 QLYDSMLRNGIMPDGLLLSTLAD 163
           +L+D M      P+    + L +
Sbjct: 419 RLWDDMFERKCKPNAFTYNVLIE 441



 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
            L  A +L+  + +R  +P+  TYN +I G      + E V++ E++      PN  TF 
Sbjct: 413 ELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFL 472

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKG 92
           IL +   K G+ +DA  + S  +  G
Sbjct: 473 ILFEGLQKLGKEEDAIKIVSMAVMNG 498


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 5/150 (3%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L K   +D A+ LF Q+ D+ + PD++TY  +I G     R+ EA  LFE+       P 
Sbjct: 215 LCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPT 274

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120
            +T+  +ID  CK GR+++A  ++  M+ E   K ++ TYS LI+G   S   + A+++Y
Sbjct: 275 VVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELY 334

Query: 121 EEMCENNISPNIAGRPTEAMQLYDSMLRNG 150
           EEM +   SP++    T    L D + ++G
Sbjct: 335 EEMLDTGCSPDVVTYNT----LLDGLCKSG 360



 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 14/167 (8%)

Query: 23  LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82
             P++I+Y  +I G C   ++D+A+ LF+++    + P+ +T+  LID   K+ R+ +A 
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAY 260

Query: 83  MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-ENNISP----------- 130
            +F +   KG    VVTY+ +IDG  K   +++A  +Y++M  E ++ P           
Sbjct: 261 DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALING 320

Query: 131 -NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176
            N++ R  +A +LY+ ML  G  PD +  +TL D  L  SG ++  +
Sbjct: 321 LNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLD-GLCKSGCEDKAM 366



 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 49/220 (22%)

Query: 3   IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGY------------------------- 37
           +K   ++ A   F        EPD ++YNT++ G+                         
Sbjct: 113 VKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLR 172

Query: 38  ---------CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88
                    CS  ++  A ++F+ ++ +   PN I++TI+ID  CK  ++D A  +F +M
Sbjct: 173 SHNIVLRGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFKQM 231

Query: 89  LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRP 136
           ++K    +VVTY  LIDG  K + +K A+D++EE       P +             GR 
Sbjct: 232 VDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRI 291

Query: 137 TEAMQLYDSMLRN-GIMPDGLLLSTLAD-YNLQSSGSQEH 174
             A+ LYD M+R   + PD    S L +  NL + G + +
Sbjct: 292 ENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAY 331



 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 89/159 (55%), Gaps = 14/159 (8%)

Query: 9   DAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           D A+++F ++    + +P++ITY  +I  +C ++RL +AV+L +++    L P+++TFT 
Sbjct: 363 DKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTT 422

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           +I   CKE R+D+A  +F   + K  K + V ++ ++ GY K   +  A  +++ M ++ 
Sbjct: 423 VIQKLCKESRIDEAHELFES-IGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSG 481

Query: 128 ISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154
            +P +A            GR ++A+ +Y  M+  G  P+
Sbjct: 482 CAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520



 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 2   LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61
           L KE  +D A +LF  +  +  +PD + +NT++ GYC + R+D+A +L +++      P 
Sbjct: 427 LCKESRIDEAHELFESI-GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPT 485

Query: 62  SITFTILIDAFCKEGRMDDATMMFSKMLEKG 92
             T+T L+  FC+ GR  DA +M+ +M+E G
Sbjct: 486 LATYTALVTGFCRTGRYSDALIMYHEMIEMG 516



 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 7   HLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65
            ++ AL L+  +  +  L+PD+ TY+ +I G    NR ++A +L+E++      P+ +T+
Sbjct: 290 RIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTY 349

Query: 66  TILIDAFCKEGRMDDATMMFSKM-LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124
             L+D  CK G  D A  +F KM +      NV+TY+ LID + K   +  A  + +EM 
Sbjct: 350 NTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEME 409

Query: 125 ENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST-LADY 164
             ++ P+               R  EA +L++S+ +    PD +L +T LA Y
Sbjct: 410 GRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKT-CKPDSVLFNTMLAGY 461



 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 21/165 (12%)

Query: 8   LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67
           ++ +L L+G +    L PD++    +I      N   E  Q   K +  +   N  T   
Sbjct: 56  IEKSLGLYGDI----LVPDLV--GKVIHRIPDPNTAWEVFQWAGKQS--KFTHNRFTCNN 107

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127
           L+  + K  R++DA + F   ++   + + V+Y+ L++G+FK+ ++K A  ++ EM ++ 
Sbjct: 108 LLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSG 167

Query: 128 I----SPNI-------AGRPTEAMQLYDSMLRNGIMPDGLLLSTL 161
           I    S NI        G+ + A +++  M  +GI    L+  T+
Sbjct: 168 IAVLRSHNIVLRGLCSGGKISMAWEVFKDM--SGIFSPNLISYTI 210


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 22/174 (12%)

Query: 7   HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66
           +L  A +++  + ++G++PD++ +NT+I G     R  EAV++FE +      PN  T+T
Sbjct: 356 NLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 415

Query: 67  ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126
           +LI   CK+G++D A   F +M   G +  V TY+CL+ GY  ++ M     + EEM + 
Sbjct: 416 MLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQK 475

Query: 127 NISPNIAGR--------------PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166
              P+  GR              P +A+++Y  M+  G+ P      T+  YN+
Sbjct: 476 GCPPD--GRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEP------TIHTYNM 521



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 4   KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63
           K+  LD A++ F ++   G +P++ TY  ++ GY +  R+D    + E++      P+  
Sbjct: 423 KQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGR 482

Query: 64  TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEE 122
           T+  LI         DDA  ++ KM+ KG +  + TY+ ++  YF   +N      V+EE
Sbjct: 483 TYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAVWEE 542

Query: 123 MCENNISPNIA------------GRPTEAMQLYDSMLRNGI 151
           M    I P++             GRP EA +  + M++ G+
Sbjct: 543 MHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGM 583



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 11  ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70
           A ++F ++ D+   PD+ +Y  ++  +C+   L EA +++  +    +KP+ +    +ID
Sbjct: 326 AARVFDRMRDQ-YTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMID 384

Query: 71  AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130
              +  R  +A  MF  M  KGP  NV TY+ LI  + K   +  A   +EEM      P
Sbjct: 385 GLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQP 444

Query: 131 NI------------AGRPTEAMQLYDSMLRNGIMPDG 155
            +            A R      + + M + G  PDG
Sbjct: 445 EVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDG 481



 Score = 46.6 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 9   DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTI 67
           D A++++ ++  +GLEP I TYN ++  Y    R       ++E++    + P+  ++T+
Sbjct: 498 DDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTV 557

Query: 68  LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101
            I+   + GR  +A     +M++KG KA  + Y+
Sbjct: 558 FINGHIRHGRPAEACKFLEEMIQKGMKAPQIDYN 591



 Score = 42.7 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 46/171 (26%)

Query: 30  YNTIICGYCSLNRLDEAVQLFEKL------------TCV--------------------- 56
           +   I  + +   +  AV +FE +             C+                     
Sbjct: 275 FKIAIKSFAAAGEIKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMR 334

Query: 57  -QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115
            Q  P+  ++T L+ A+C    + +A  +++ MLEKG K +VV ++ +IDG  + Q    
Sbjct: 335 DQYTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPE 394

Query: 116 AFDVYEEMCENNISPNI------------AGRPTEAMQLYDSMLRNGIMPD 154
           A  ++E M      PN+             G+   AM+ ++ M   G  P+
Sbjct: 395 AVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPE 445


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,570,062,896
Number of Sequences: 23463169
Number of extensions: 94589500
Number of successful extensions: 333561
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9144
Number of HSP's successfully gapped in prelim test: 2858
Number of HSP's that attempted gapping in prelim test: 218965
Number of HSP's gapped (non-prelim): 74979
length of query: 176
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 44
effective length of database: 9,262,057,059
effective search space: 407530510596
effective search space used: 407530510596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)