BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030489
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 36 GYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94
Y DEA++ ++K ++L P S + L +A+ K+G D+A + K LE P+
Sbjct: 10 AYYKQGDYDEAIEYYQK--ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 95 ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
+ Y+ L + Y+K + A + Y++ E
Sbjct: 68 SAEAWYN-LGNAYYKQGDYDEAIEYYQKALE 97
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 36 GYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94
Y DEA++ ++K ++L P S + L +A+ K+G D+A + K LE P+
Sbjct: 44 AYYKQGDYDEAIEYYQK--ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 95 ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125
+ Y+ L + Y+K + A + Y++ E
Sbjct: 102 SAEAWYN-LGNAYYKQGDYDEAIEYYQKALE 131
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 36 GYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94
Y DEA++ ++K ++L P S + L +A+ K+G D+A + K LE P+
Sbjct: 78 AYYKQGDYDEAIEYYQK--ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Query: 95 A 95
+
Sbjct: 136 S 136
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P++ Y+ L + Y+K + A + Y++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN-LGNAYYKQGDYDEAIEYYQKA 61
Query: 124 CE 125
E
Sbjct: 62 LE 63
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 2 LIKECHLDAALKLFGQLTDRGLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60
K+ D A++ + + + L+P+ + + Y DEA++ ++K ++L P
Sbjct: 19 YYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK--ALELDP 74
Query: 61 NSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
N+ + L +A+ K+G D+A + K LE P
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P N + L + Y+K + A + Y++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 124 CENNISPNIA 133
E + PN A
Sbjct: 70 LE--LDPNNA 77
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 37 YCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95
Y DEA++ ++K ++L P S + L +A+ K+G D+A + K LE P++
Sbjct: 13 YYKQGDYDEAIEYYQK--ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P++ Y+ L + Y+K + A + Y++
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN-LGNAYYKQGDYDEAIEYYQKA 63
Query: 124 CE 125
E
Sbjct: 64 LE 65
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 37 YCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGP 93
Y DEA++ ++K ++L PN+ + L +A+ K+G D+A + K LE P
Sbjct: 53 YYKQGDYDEAIEYYQK--ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P N + L + Y+K + A + Y++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 124 CENNISPNIA 133
E + PN A
Sbjct: 70 LE--LYPNNA 77
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123
+ L +A+ K+G D+A + K LE P N + L + Y+K + A + Y++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 124 CENNISPNIA 133
E + PN A
Sbjct: 70 LE--LDPNNA 77
>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv976
Length = 323
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF-DVYEEMCENNISPNIAGRPT 137
+ A + K+L PKA T L + + ++MK F D+ E E+ P + +P+
Sbjct: 249 EKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENESTAKPQVLAQPS 308
Query: 138 EAMQ 141
+ +
Sbjct: 309 TSRK 312
>pdb|1Z9H|A Chain A, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|B Chain B, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|C Chain C, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|D Chain D, Microsomal Prostaglandin E Synthase Type-2
pdb|2PBJ|A Chain A, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|B Chain B, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|C Chain C, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|D Chain D, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
Length = 290
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 128 ISPNIAGRPTEAMQLYDSMLRNG 150
ISPN+ PTEA+ +D ++R G
Sbjct: 159 ISPNVYRTPTEALASFDYIVREG 181
>pdb|1C5D|H Chain H, The Crystal Structure Of The Fab Fragment Of A Rat
Monoclonal Antibody Against The Main Immunogenic Region
Of The Human Muscle Acetylcholine Receptor
pdb|1C5D|B Chain B, The Crystal Structure Of The Fab Fragment Of A Rat
Monoclonal Antibody Against The Main Immunogenic Region
Of The Human Muscle Acetylcholine Receptor
Length = 215
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM-FSKM 88
YN+ + S+NR Q+F K+ +Q + +I F D + TM+ S
Sbjct: 59 YNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSA 118
Query: 89 LEKGPK------------ANVVTYSCLIDGYF 108
P ++ VT CL+ GYF
Sbjct: 119 QTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYF 150
>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In
Complex With Inhibitor Pv1533
Length = 322
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF-DVYEEMCENNISPNIAGRPT 137
+ A + K+L PKA T L + + ++MK F D+ E E+ P + +P+
Sbjct: 248 EKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENESTALPQVLAQPS 307
Query: 138 EAMQ 141
+ +
Sbjct: 308 TSRK 311
>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A
Specific Inhibitor
pdb|2W7X|A Chain A, Cellular Inhibition Of Checkpoint Kinase 2 And
Potentiation Of Cytotoxic Drugs By Novel Chk2 Inhibitor
Pv1019
pdb|2YIQ|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1322
pdb|2YIR|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1352
pdb|2YIT|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Pv1162, A Novel Inhibitor
pdb|2YCQ|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1115
pdb|2YCS|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Pv788
Length = 323
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF-DVYEEMCENNISPNIAGRPT 137
+ A + K+L PKA T L + + ++MK F D+ E E+ P + +P+
Sbjct: 249 EKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENESTALPQVLAQPS 308
Query: 138 EAMQ 141
+ +
Sbjct: 309 TSRK 312
>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1531
Length = 322
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF-DVYEEMCENNISPNIAGRPT 137
+ A + K+L PKA T L + + ++MK F D+ E E+ P + +P+
Sbjct: 249 EKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENESTALPQVLAQPS 308
Query: 138 EAMQ 141
+ +
Sbjct: 309 TSRK 312
>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp
pdb|2CN8|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Debromohymenialdisine
pdb|2WTC|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTD|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTI|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XBJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XM8|A Chain A, Co-Crystal Structure Of A Small Molecule Inhibitor Bound
To The Kinase Domain Of Chk2
pdb|2XM9|A Chain A, Structure Of A Small Molecule Inhibitor With The Kinase
Domain Of Chk2
pdb|4A9R|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9S|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9T|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9U|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
Length = 329
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF-DVYEEMCENNISPNIAGRPT 137
+ A + K+L PKA T L + + ++MK F D+ E E+ P + +P+
Sbjct: 255 EKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENESTALPQVLAQPS 314
Query: 138 EAMQ 141
+ +
Sbjct: 315 TSRK 318
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 66 TILIDAFCKEGRMDDATMMFSKMLEKGPK 94
+ L + + GR+D+A ++K LE+ PK
Sbjct: 155 SALAELYLSMGRLDEALAQYAKALEQAPK 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,956,458
Number of Sequences: 62578
Number of extensions: 184884
Number of successful extensions: 829
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 24
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)