Query 030489
Match_columns 176
No_of_seqs 257 out of 1516
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 14:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.4E-35 7.3E-40 229.0 20.0 174 1-174 588-773 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.5E-35 9.8E-40 228.3 20.5 173 2-174 482-668 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.3E-33 2.8E-38 216.0 15.6 170 1-174 299-481 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.6E-33 5.7E-38 214.3 15.2 170 1-174 268-445 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 7.2E-31 1.6E-35 204.9 17.4 174 1-174 363-644 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 6.4E-31 1.4E-35 205.2 17.1 170 1-174 262-443 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 1.8E-16 4E-21 81.0 6.2 49 25-73 1-49 (50)
8 PRK11788 tetratricopeptide rep 99.7 8.6E-15 1.9E-19 105.9 16.9 120 3-124 118-241 (389)
9 PF13041 PPR_2: PPR repeat fam 99.7 3.6E-16 7.8E-21 79.9 6.3 50 60-109 1-50 (50)
10 PRK11788 tetratricopeptide rep 99.7 2.5E-14 5.3E-19 103.5 18.1 121 4-126 47-170 (389)
11 TIGR02917 PEP_TPR_lipo putativ 99.6 5.1E-13 1.1E-17 105.2 18.8 163 4-174 715-890 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.6 6.2E-13 1.3E-17 104.7 19.0 167 3-174 578-755 (899)
13 TIGR02521 type_IV_pilW type IV 99.5 2.4E-11 5.1E-16 81.4 18.4 170 2-174 41-222 (234)
14 TIGR00990 3a0801s09 mitochondr 99.5 3.3E-11 7.2E-16 92.1 19.8 167 3-174 376-561 (615)
15 PF13429 TPR_15: Tetratricopep 99.4 4.9E-12 1.1E-16 87.8 12.8 168 3-175 88-268 (280)
16 KOG4422 Uncharacterized conser 99.4 1.2E-11 2.7E-16 87.4 13.9 118 2-123 217-339 (625)
17 PRK15174 Vi polysaccharide exp 99.4 8.2E-11 1.8E-15 90.4 18.2 166 3-174 188-371 (656)
18 KOG4422 Uncharacterized conser 99.4 3.1E-11 6.6E-16 85.4 13.5 126 24-172 204-329 (625)
19 TIGR00990 3a0801s09 mitochondr 99.4 1.5E-10 3.2E-15 88.7 18.5 163 6-174 308-486 (615)
20 COG2956 Predicted N-acetylgluc 99.4 1.7E-10 3.8E-15 78.8 16.1 167 3-174 46-268 (389)
21 PRK15174 Vi polysaccharide exp 99.4 1.6E-10 3.4E-15 88.9 17.9 166 3-173 87-264 (656)
22 PRK12370 invasion protein regu 99.3 5.9E-10 1.3E-14 84.3 18.0 158 6-169 318-489 (553)
23 KOG4626 O-linked N-acetylgluco 99.3 5.6E-10 1.2E-14 82.5 16.4 166 2-174 296-475 (966)
24 KOG1126 DNA-binding cell divis 99.3 6.1E-11 1.3E-15 87.4 11.4 169 2-175 431-611 (638)
25 PRK10747 putative protoheme IX 99.3 6E-10 1.3E-14 81.0 15.9 39 134-174 342-380 (398)
26 PRK12370 invasion protein regu 99.3 2E-09 4.4E-14 81.4 18.9 162 2-165 348-519 (553)
27 COG3063 PilF Tfp pilus assembl 99.3 3E-09 6.4E-14 69.7 16.2 170 1-173 44-225 (250)
28 TIGR02521 type_IV_pilW type IV 99.2 4.5E-09 9.7E-14 70.3 17.8 143 2-148 75-231 (234)
29 PF12854 PPR_1: PPR repeat 99.2 2E-11 4.4E-16 56.6 3.8 29 59-87 4-32 (34)
30 PRK09782 bacteriophage N4 rece 99.2 4.3E-09 9.4E-14 83.7 18.6 163 3-174 520-696 (987)
31 TIGR00540 hemY_coli hemY prote 99.2 3E-09 6.4E-14 77.7 16.3 171 3-174 164-389 (409)
32 PF13429 TPR_15: Tetratricopep 99.2 2.1E-11 4.5E-16 84.7 4.8 165 2-172 18-197 (280)
33 PF12854 PPR_1: PPR repeat 99.2 4.3E-11 9.3E-16 55.5 3.9 34 21-54 1-34 (34)
34 PRK11447 cellulose synthase su 99.2 9.7E-09 2.1E-13 83.8 19.1 167 4-174 473-730 (1157)
35 KOG1155 Anaphase-promoting com 99.2 7.5E-09 1.6E-13 74.1 15.6 170 3-175 341-527 (559)
36 PRK11447 cellulose synthase su 99.2 1.1E-08 2.3E-13 83.6 18.8 123 2-126 279-414 (1157)
37 PRK10370 formate-dependent nit 99.1 2.1E-08 4.7E-13 66.0 16.7 122 5-129 52-176 (198)
38 PRK10049 pgaA outer membrane p 99.1 1.4E-08 3E-13 79.7 17.5 167 3-174 248-446 (765)
39 PRK11189 lipoprotein NlpI; Pro 99.1 6.1E-08 1.3E-12 67.9 18.6 167 2-174 74-255 (296)
40 PRK09782 bacteriophage N4 rece 99.1 2E-08 4.3E-13 80.0 17.6 141 3-149 553-706 (987)
41 COG2956 Predicted N-acetylgluc 99.1 4.7E-08 1E-12 67.2 16.5 165 2-169 117-329 (389)
42 KOG1129 TPR repeat-containing 99.1 6.2E-09 1.4E-13 71.7 12.1 168 2-174 233-448 (478)
43 PRK10049 pgaA outer membrane p 99.1 5.9E-08 1.3E-12 76.2 19.0 159 2-165 282-470 (765)
44 KOG4318 Bicoid mRNA stability 99.1 1.2E-08 2.7E-13 78.1 14.4 159 13-172 11-288 (1088)
45 KOG1129 TPR repeat-containing 99.1 4.2E-08 9.2E-13 67.7 15.6 145 26-174 222-377 (478)
46 TIGR00540 hemY_coli hemY prote 99.0 6.5E-08 1.4E-12 70.8 17.0 167 4-174 96-282 (409)
47 PRK10747 putative protoheme IX 99.0 5.7E-08 1.2E-12 70.8 16.4 121 5-129 97-219 (398)
48 PRK14574 hmsH outer membrane p 99.0 9.2E-08 2E-12 75.0 18.0 166 2-172 44-220 (822)
49 KOG4626 O-linked N-acetylgluco 99.0 1E-08 2.2E-13 76.1 11.3 117 4-124 230-347 (966)
50 COG3071 HemY Uncharacterized e 99.0 2.6E-07 5.6E-12 65.1 17.6 125 5-131 97-221 (400)
51 PRK15359 type III secretion sy 99.0 1.5E-07 3.2E-12 58.9 14.5 110 11-126 12-121 (144)
52 PRK14574 hmsH outer membrane p 99.0 1.4E-07 3.1E-12 74.0 17.1 169 2-174 302-503 (822)
53 PRK11189 lipoprotein NlpI; Pro 98.9 6.4E-07 1.4E-11 62.8 17.4 142 5-148 39-193 (296)
54 TIGR02552 LcrH_SycD type III s 98.9 2.8E-07 6E-12 56.9 13.5 111 14-127 5-115 (135)
55 PRK15359 type III secretion sy 98.9 1.3E-07 2.7E-12 59.2 12.0 103 2-107 34-136 (144)
56 TIGR03302 OM_YfiO outer membra 98.9 9.9E-07 2.2E-11 59.7 17.0 146 2-148 43-231 (235)
57 TIGR00756 PPR pentatricopeptid 98.8 7.2E-09 1.6E-13 48.4 4.2 33 29-61 2-34 (35)
58 COG4783 Putative Zn-dependent 98.8 2E-06 4.4E-11 62.3 17.9 152 3-164 317-471 (484)
59 KOG0547 Translocase of outer m 98.8 2.5E-07 5.5E-12 67.0 12.8 168 2-174 370-556 (606)
60 KOG2076 RNA polymerase III tra 98.8 9.1E-07 2E-11 68.1 16.2 166 6-174 153-335 (895)
61 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 3.7E-07 8E-12 65.8 13.4 115 4-124 181-295 (395)
62 PF13812 PPR_3: Pentatricopept 98.8 1.5E-08 3.3E-13 47.0 4.3 33 28-60 2-34 (34)
63 COG3063 PilF Tfp pilus assembl 98.8 3E-06 6.5E-11 55.9 15.6 154 2-160 79-245 (250)
64 TIGR00756 PPR pentatricopeptid 98.8 2.2E-08 4.9E-13 46.6 4.5 33 99-131 2-34 (35)
65 KOG1840 Kinesin light chain [C 98.8 6.5E-07 1.4E-11 66.4 14.0 173 2-174 251-469 (508)
66 PRK15179 Vi polysaccharide bio 98.8 9.4E-07 2E-11 68.3 15.4 119 4-125 98-216 (694)
67 PF13812 PPR_3: Pentatricopept 98.7 2.6E-08 5.6E-13 46.2 4.2 32 99-130 3-34 (34)
68 KOG2002 TPR-containing nuclear 98.7 4.7E-07 1E-11 70.2 12.9 146 5-152 625-801 (1018)
69 COG5010 TadD Flp pilus assembl 98.7 1.5E-06 3.2E-11 58.2 13.4 141 4-147 78-229 (257)
70 cd05804 StaR_like StaR_like; a 98.7 7.4E-06 1.6E-10 58.8 18.1 142 3-148 54-214 (355)
71 COG5010 TadD Flp pilus assembl 98.7 2E-06 4.3E-11 57.6 13.8 145 26-174 66-221 (257)
72 PF04733 Coatomer_E: Coatomer 98.7 5.7E-07 1.2E-11 62.7 11.8 113 3-125 113-229 (290)
73 PF06239 ECSIT: Evolutionarily 98.7 3.3E-06 7.2E-11 55.4 14.4 125 24-148 44-197 (228)
74 PF10037 MRP-S27: Mitochondria 98.7 2.9E-07 6.3E-12 66.8 10.3 105 6-110 80-186 (429)
75 KOG1155 Anaphase-promoting com 98.7 1.5E-06 3.2E-11 62.8 13.3 59 66-125 334-392 (559)
76 PF10037 MRP-S27: Mitochondria 98.7 7.8E-07 1.7E-11 64.6 12.1 111 21-131 60-172 (429)
77 TIGR03302 OM_YfiO outer membra 98.7 4.8E-06 1E-10 56.4 15.4 149 26-174 32-222 (235)
78 PF08579 RPM2: Mitochondrial r 98.7 1.3E-06 2.9E-11 51.2 10.3 82 29-110 27-117 (120)
79 PRK15179 Vi polysaccharide bio 98.7 8.8E-06 1.9E-10 63.1 17.8 132 23-160 82-227 (694)
80 cd00189 TPR Tetratricopeptide 98.6 2.1E-06 4.4E-11 48.8 11.3 96 29-126 2-97 (100)
81 PF09976 TPR_21: Tetratricopep 98.6 6.4E-06 1.4E-10 51.6 13.9 117 4-122 23-143 (145)
82 PF08579 RPM2: Mitochondrial r 98.6 7.3E-07 1.6E-11 52.2 8.7 72 3-74 36-116 (120)
83 KOG1126 DNA-binding cell divis 98.6 2.4E-06 5.3E-11 63.8 13.0 141 4-149 467-620 (638)
84 KOG1840 Kinesin light chain [C 98.6 5E-06 1.1E-10 61.9 14.5 174 1-174 208-428 (508)
85 KOG2003 TPR repeat-containing 98.6 3E-06 6.5E-11 61.4 12.6 163 5-174 503-679 (840)
86 TIGR02552 LcrH_SycD type III s 98.6 3.3E-06 7.2E-11 52.1 11.6 89 2-92 27-115 (135)
87 PRK10370 formate-dependent nit 98.6 8.2E-06 1.8E-10 53.9 13.7 116 40-158 52-181 (198)
88 TIGR02795 tol_pal_ybgF tol-pal 98.6 7.6E-06 1.6E-10 49.1 12.6 99 28-126 3-105 (119)
89 PF12895 Apc3: Anaphase-promot 98.6 2.5E-07 5.4E-12 52.4 5.5 81 5-87 2-83 (84)
90 PF01535 PPR: PPR repeat; Int 98.6 1.2E-07 2.6E-12 42.9 3.4 29 99-127 2-30 (31)
91 PF01535 PPR: PPR repeat; Int 98.5 1.2E-07 2.6E-12 42.9 3.3 29 29-57 2-30 (31)
92 CHL00033 ycf3 photosystem I as 98.5 4.8E-05 1E-09 48.9 15.5 114 8-122 15-138 (168)
93 PF12895 Apc3: Anaphase-promot 98.5 5.6E-07 1.2E-11 50.9 5.8 81 40-122 2-83 (84)
94 PRK02603 photosystem I assembl 98.5 6.3E-05 1.4E-09 48.5 16.0 132 26-171 34-167 (172)
95 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.1E-05 2.3E-10 48.5 11.7 99 2-101 12-114 (119)
96 PRK15363 pathogenicity island 98.5 1.5E-05 3.2E-10 50.0 11.8 98 26-125 34-131 (157)
97 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.2E-05 9.1E-10 55.5 15.8 116 29-174 171-287 (395)
98 KOG1173 Anaphase-promoting com 98.4 1E-05 2.2E-10 59.7 12.5 122 2-125 390-517 (611)
99 PF04733 Coatomer_E: Coatomer 98.4 1.8E-06 3.9E-11 60.2 8.4 129 32-171 107-251 (290)
100 cd00189 TPR Tetratricopeptide 98.4 5.9E-06 1.3E-10 46.8 9.5 89 2-92 10-98 (100)
101 PLN03088 SGT1, suppressor of 98.4 1.8E-05 3.8E-10 57.1 13.6 89 3-93 13-101 (356)
102 KOG2003 TPR repeat-containing 98.4 4.9E-05 1.1E-09 55.3 15.3 97 26-125 591-688 (840)
103 KOG3060 Uncharacterized conser 98.4 9.1E-05 2E-09 49.8 15.3 141 4-149 64-220 (289)
104 PF06239 ECSIT: Evolutionarily 98.4 1.3E-05 2.8E-10 52.7 10.9 105 59-170 44-153 (228)
105 KOG4318 Bicoid mRNA stability 98.4 2.6E-06 5.6E-11 65.9 8.4 67 48-115 11-101 (1088)
106 PRK15363 pathogenicity island 98.4 1.5E-05 3.2E-10 50.0 10.1 88 2-91 45-132 (157)
107 PLN02789 farnesyltranstransfer 98.4 0.00028 6E-09 50.1 17.8 126 4-132 49-177 (320)
108 PF09976 TPR_21: Tetratricopep 98.3 4.3E-05 9.2E-10 47.9 12.1 118 27-145 12-143 (145)
109 COG3071 HemY Uncharacterized e 98.3 5.8E-05 1.3E-09 53.6 13.5 116 2-124 273-388 (400)
110 PLN03088 SGT1, suppressor of 98.3 4.4E-05 9.5E-10 55.0 13.3 93 33-127 8-100 (356)
111 PF12569 NARP1: NMDA receptor- 98.3 0.00012 2.6E-09 55.1 15.6 94 31-127 198-292 (517)
112 KOG2076 RNA polymerase III tra 98.3 8.9E-05 1.9E-09 57.7 14.6 119 5-124 390-510 (895)
113 cd05804 StaR_like StaR_like; a 98.3 9.1E-05 2E-09 53.2 14.0 97 27-124 114-213 (355)
114 KOG3081 Vesicle coat complex C 98.3 0.0002 4.3E-09 48.6 14.2 115 2-126 118-236 (299)
115 PF05843 Suf: Suppressor of fo 98.3 3.6E-05 7.7E-10 53.6 11.2 116 7-125 16-135 (280)
116 PF14559 TPR_19: Tetratricopep 98.2 5E-06 1.1E-10 44.9 5.5 53 3-56 2-54 (68)
117 KOG1070 rRNA processing protei 98.2 0.0001 2.2E-09 60.1 14.4 113 9-124 1514-1627(1710)
118 PRK02603 photosystem I assembl 98.2 0.00014 3E-09 47.0 12.6 76 2-78 45-122 (172)
119 KOG1125 TPR repeat-containing 98.2 0.00014 3.1E-09 54.0 13.7 167 2-174 295-517 (579)
120 KOG0495 HAT repeat protein [RN 98.2 0.00049 1.1E-08 52.4 16.5 166 2-174 526-704 (913)
121 KOG1070 rRNA processing protei 98.2 0.00038 8.3E-09 56.9 16.8 163 4-170 1470-1649(1710)
122 KOG0547 Translocase of outer m 98.2 0.00018 4E-09 52.7 13.5 141 5-148 339-490 (606)
123 KOG2002 TPR-containing nuclear 98.2 8.1E-05 1.8E-09 58.4 12.4 167 6-174 544-735 (1018)
124 PRK14720 transcript cleavage f 98.2 0.00017 3.6E-09 57.3 14.2 118 3-126 42-178 (906)
125 KOG4340 Uncharacterized conser 98.1 7.9E-05 1.7E-09 51.5 10.7 40 134-174 290-329 (459)
126 KOG0495 HAT repeat protein [RN 98.1 0.00072 1.6E-08 51.6 16.1 163 5-174 597-772 (913)
127 PF05843 Suf: Suppressor of fo 98.1 0.00015 3.3E-09 50.6 12.0 133 28-165 2-150 (280)
128 KOG3081 Vesicle coat complex C 98.1 0.00012 2.6E-09 49.6 10.7 148 12-170 93-256 (299)
129 KOG1156 N-terminal acetyltrans 98.1 0.00062 1.4E-08 51.5 15.4 155 4-163 53-260 (700)
130 PF13414 TPR_11: TPR repeat; P 98.1 4E-05 8.6E-10 41.4 7.3 63 62-125 3-66 (69)
131 KOG1128 Uncharacterized conser 98.1 0.00023 5E-09 54.5 13.1 145 1-148 433-615 (777)
132 PF12569 NARP1: NMDA receptor- 98.1 0.0012 2.5E-08 50.0 16.8 122 2-125 204-333 (517)
133 CHL00033 ycf3 photosystem I as 98.1 0.00016 3.5E-09 46.4 11.0 85 3-88 46-139 (168)
134 PF13432 TPR_16: Tetratricopep 98.1 4.9E-05 1.1E-09 40.6 7.1 54 70-124 5-58 (65)
135 KOG1125 TPR repeat-containing 98.0 0.00029 6.3E-09 52.5 12.5 139 7-147 409-552 (579)
136 PF12688 TPR_5: Tetratrico pep 98.0 0.00059 1.3E-08 41.2 11.7 89 34-122 8-100 (120)
137 KOG0553 TPR repeat-containing 98.0 0.0013 2.9E-08 45.4 14.4 96 3-102 92-187 (304)
138 PF13414 TPR_11: TPR repeat; P 98.0 6.8E-05 1.5E-09 40.5 7.0 66 26-92 2-68 (69)
139 PF14559 TPR_19: Tetratricopep 98.0 4E-05 8.8E-10 41.2 6.0 54 38-92 2-55 (68)
140 PLN02789 farnesyltranstransfer 98.0 0.0024 5.3E-08 45.4 17.3 157 7-167 87-267 (320)
141 PF13432 TPR_16: Tetratricopep 98.0 9.1E-05 2E-09 39.5 7.1 57 34-91 4-60 (65)
142 PF12688 TPR_5: Tetratrico pep 98.0 0.00068 1.5E-08 40.9 11.4 101 3-109 12-118 (120)
143 KOG1173 Anaphase-promoting com 98.0 0.001 2.2E-08 49.6 14.3 160 5-167 325-534 (611)
144 COG4235 Cytochrome c biogenesi 97.9 0.0025 5.4E-08 44.1 15.1 104 24-129 153-259 (287)
145 KOG2376 Signal recognition par 97.9 0.00051 1.1E-08 51.5 12.2 117 2-128 22-141 (652)
146 PF12921 ATP13: Mitochondrial 97.9 0.00063 1.4E-08 41.5 10.7 87 26-112 1-103 (126)
147 KOG1914 mRNA cleavage and poly 97.9 0.0013 2.8E-08 49.0 13.9 164 8-172 309-489 (656)
148 PF14938 SNAP: Soluble NSF att 97.9 0.00053 1.2E-08 47.9 11.8 25 100-124 158-182 (282)
149 KOG1915 Cell cycle control pro 97.9 0.0019 4.2E-08 47.6 14.6 114 6-123 87-200 (677)
150 PRK10803 tol-pal system protei 97.9 0.0013 2.8E-08 45.5 13.3 100 27-126 143-246 (263)
151 PF03704 BTAD: Bacterial trans 97.9 0.0012 2.6E-08 41.3 12.0 60 65-125 65-124 (146)
152 PRK15331 chaperone protein Sic 97.9 0.0022 4.7E-08 40.7 13.6 112 31-147 41-152 (165)
153 COG4783 Putative Zn-dependent 97.9 0.0055 1.2E-07 45.2 16.2 102 69-174 313-427 (484)
154 PRK10803 tol-pal system protei 97.8 0.00081 1.8E-08 46.4 11.1 91 3-93 154-248 (263)
155 PF03704 BTAD: Bacterial trans 97.8 0.0004 8.6E-09 43.5 8.7 96 5-101 19-140 (146)
156 KOG0553 TPR repeat-containing 97.8 0.00054 1.2E-08 47.3 9.7 90 35-126 89-178 (304)
157 PRK10153 DNA-binding transcrip 97.8 0.0025 5.3E-08 48.4 14.1 119 7-128 357-484 (517)
158 KOG1174 Anaphase-promoting com 97.8 0.0038 8.2E-08 45.3 14.1 164 7-175 211-388 (564)
159 KOG1915 Cell cycle control pro 97.8 0.002 4.4E-08 47.5 12.9 116 4-124 119-234 (677)
160 PRK14720 transcript cleavage f 97.8 0.0042 9E-08 49.8 15.7 63 26-90 115-177 (906)
161 PRK15331 chaperone protein Sic 97.8 0.00053 1.1E-08 43.4 8.8 88 2-91 47-134 (165)
162 PF13525 YfiO: Outer membrane 97.8 0.0032 6.9E-08 41.8 13.2 37 134-172 155-195 (203)
163 PF13371 TPR_9: Tetratricopept 97.8 0.00032 6.9E-09 38.2 7.0 56 36-92 4-59 (73)
164 PF14938 SNAP: Soluble NSF att 97.7 0.0036 7.7E-08 43.8 13.7 160 3-167 85-262 (282)
165 KOG2796 Uncharacterized conser 97.7 0.0019 4.2E-08 44.1 11.5 131 29-161 179-325 (366)
166 KOG2053 Mitochondrial inherita 97.7 0.011 2.4E-07 46.7 16.8 115 3-123 20-136 (932)
167 PRK10866 outer membrane biogen 97.7 0.0062 1.3E-07 41.7 14.8 145 27-174 32-231 (243)
168 KOG1174 Anaphase-promoting com 97.7 0.0047 1E-07 44.9 13.7 53 70-123 342-394 (564)
169 KOG3941 Intermediate in Toll s 97.7 0.0052 1.1E-07 42.5 13.0 124 24-147 64-216 (406)
170 KOG3060 Uncharacterized conser 97.7 0.0072 1.6E-07 41.0 13.5 122 4-128 98-222 (289)
171 KOG3785 Uncharacterized conser 97.6 0.0074 1.6E-07 43.1 13.7 160 6-170 373-536 (557)
172 KOG1128 Uncharacterized conser 97.6 0.00099 2.1E-08 51.2 10.0 120 3-126 496-616 (777)
173 KOG2376 Signal recognition par 97.6 0.0075 1.6E-07 45.6 14.0 143 2-150 56-254 (652)
174 KOG2047 mRNA splicing factor [ 97.6 0.013 2.9E-07 44.9 15.1 92 2-93 397-508 (835)
175 PF13371 TPR_9: Tetratricopept 97.6 0.00076 1.6E-08 36.7 6.9 53 3-56 6-58 (73)
176 KOG4162 Predicted calmodulin-b 97.5 0.011 2.3E-07 46.1 13.8 121 2-125 660-782 (799)
177 PF13424 TPR_12: Tetratricopep 97.5 0.00055 1.2E-08 37.9 5.5 60 64-123 7-72 (78)
178 PF13424 TPR_12: Tetratricopep 97.5 0.00048 1E-08 38.1 5.2 65 26-90 4-74 (78)
179 KOG1127 TPR repeat-containing 97.5 0.0013 2.8E-08 52.4 8.9 137 7-147 507-657 (1238)
180 KOG4340 Uncharacterized conser 97.5 0.013 2.7E-07 41.1 12.7 85 3-90 21-106 (459)
181 KOG2053 Mitochondrial inherita 97.4 0.039 8.4E-07 43.9 16.3 84 2-88 53-136 (932)
182 KOG3941 Intermediate in Toll s 97.4 0.00088 1.9E-08 46.1 6.9 84 5-88 85-185 (406)
183 PF13512 TPR_18: Tetratricopep 97.4 0.011 2.3E-07 36.7 12.4 120 27-155 11-132 (142)
184 KOG2796 Uncharacterized conser 97.4 0.0062 1.3E-07 41.7 10.1 128 5-133 190-322 (366)
185 PF04840 Vps16_C: Vps16, C-ter 97.4 0.027 5.9E-07 40.1 14.1 85 28-122 178-262 (319)
186 KOG0624 dsRNA-activated protei 97.4 0.028 6E-07 40.2 17.1 122 2-125 116-251 (504)
187 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.013 2.7E-07 43.3 12.2 66 24-91 72-141 (453)
188 PRK10153 DNA-binding transcrip 97.3 0.025 5.4E-07 43.1 14.3 134 22-159 332-490 (517)
189 KOG0548 Molecular co-chaperone 97.3 0.018 3.9E-07 43.0 12.8 93 69-166 365-470 (539)
190 PRK04841 transcriptional regul 97.3 0.038 8.2E-07 45.0 15.9 145 3-147 463-639 (903)
191 KOG1914 mRNA cleavage and poly 97.3 0.046 1E-06 41.3 15.6 139 7-147 346-499 (656)
192 PRK04841 transcriptional regul 97.3 0.029 6.3E-07 45.7 14.8 123 3-125 502-640 (903)
193 KOG0543 FKBP-type peptidyl-pro 97.2 0.028 6.1E-07 40.7 12.7 122 2-125 218-354 (397)
194 COG3629 DnrI DNA-binding trans 97.2 0.018 3.8E-07 40.1 11.3 62 63-125 154-215 (280)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.015 3.2E-07 42.9 11.4 65 61-126 74-141 (453)
196 KOG1156 N-terminal acetyltrans 97.2 0.019 4.2E-07 43.9 12.0 155 3-162 18-186 (700)
197 PF13525 YfiO: Outer membrane 97.1 0.04 8.6E-07 36.6 12.1 124 2-126 15-170 (203)
198 PF12921 ATP13: Mitochondrial 97.1 0.026 5.6E-07 34.5 10.9 65 61-125 1-80 (126)
199 KOG4555 TPR repeat-containing 97.0 0.034 7.3E-07 34.1 10.3 91 2-93 53-146 (175)
200 PF13428 TPR_14: Tetratricopep 96.9 0.0061 1.3E-07 29.6 5.4 39 64-103 3-41 (44)
201 smart00299 CLH Clathrin heavy 96.9 0.041 9E-07 34.1 10.8 124 30-167 10-137 (140)
202 PRK10866 outer membrane biogen 96.9 0.07 1.5E-06 36.6 15.8 145 3-152 43-228 (243)
203 KOG3785 Uncharacterized conser 96.9 0.024 5.2E-07 40.7 9.6 128 2-144 403-532 (557)
204 KOG2610 Uncharacterized conser 96.8 0.067 1.5E-06 38.2 11.4 141 5-147 116-274 (491)
205 COG1729 Uncharacterized protei 96.8 0.048 1E-06 37.5 10.5 99 27-126 142-244 (262)
206 PF13170 DUF4003: Protein of u 96.8 0.1 2.2E-06 36.9 13.1 117 43-161 78-223 (297)
207 PF00637 Clathrin: Region in C 96.8 0.00012 2.5E-09 45.7 -2.1 127 32-171 12-141 (143)
208 COG4700 Uncharacterized protei 96.8 0.072 1.6E-06 34.8 15.3 103 23-125 85-188 (251)
209 PF13281 DUF4071: Domain of un 96.7 0.13 2.9E-06 37.4 14.5 143 5-149 195-357 (374)
210 PF13512 TPR_18: Tetratricopep 96.7 0.061 1.3E-06 33.4 10.1 72 3-74 21-94 (142)
211 COG1729 Uncharacterized protei 96.7 0.11 2.3E-06 35.9 12.3 85 64-149 144-244 (262)
212 KOG3616 Selective LIM binding 96.7 0.014 3E-07 45.8 8.0 105 3-120 743-847 (1636)
213 KOG0985 Vesicle coat protein c 96.7 0.15 3.3E-06 41.7 13.5 87 26-120 1103-1189(1666)
214 KOG0985 Vesicle coat protein c 96.7 0.032 6.9E-07 45.3 9.8 134 26-174 1132-1268(1666)
215 KOG4570 Uncharacterized conser 96.6 0.026 5.6E-07 39.7 8.1 47 77-123 115-161 (418)
216 COG3629 DnrI DNA-binding trans 96.6 0.073 1.6E-06 37.1 10.3 79 27-106 153-236 (280)
217 PF10300 DUF3808: Protein of u 96.6 0.1 2.2E-06 39.4 11.8 118 5-125 246-375 (468)
218 COG4649 Uncharacterized protei 96.6 0.1 2.2E-06 33.7 13.6 123 3-125 69-195 (221)
219 COG4235 Cytochrome c biogenesi 96.5 0.15 3.3E-06 35.6 12.8 90 59-149 153-256 (287)
220 KOG3616 Selective LIM binding 96.5 0.013 2.8E-07 46.0 6.9 100 4-123 718-817 (1636)
221 KOG3617 WD40 and TPR repeat-co 96.5 0.041 8.9E-07 43.8 9.6 48 2-55 738-785 (1416)
222 KOG0548 Molecular co-chaperone 96.5 0.16 3.5E-06 38.2 12.0 92 34-127 365-456 (539)
223 PF13929 mRNA_stabil: mRNA sta 96.5 0.11 2.3E-06 36.3 10.3 114 8-121 144-262 (292)
224 KOG4162 Predicted calmodulin-b 96.4 0.25 5.4E-06 39.0 13.1 41 134-174 492-532 (799)
225 KOG1127 TPR repeat-containing 96.4 0.064 1.4E-06 43.4 9.9 121 2-124 536-657 (1238)
226 COG4700 Uncharacterized protei 96.4 0.14 3.1E-06 33.5 14.4 67 59-125 86-152 (251)
227 COG4105 ComL DNA uptake lipopr 96.4 0.18 3.9E-06 34.5 15.5 53 39-91 46-100 (254)
228 PF04840 Vps16_C: Vps16, C-ter 96.3 0.16 3.6E-06 36.3 11.1 52 64-119 179-230 (319)
229 KOG2047 mRNA splicing factor [ 96.3 0.36 7.8E-06 37.6 12.8 84 37-124 112-196 (835)
230 KOG4570 Uncharacterized conser 96.2 0.057 1.2E-06 38.1 7.9 83 5-91 77-164 (418)
231 PF13428 TPR_14: Tetratricopep 96.2 0.027 5.8E-07 27.3 4.8 40 28-68 2-41 (44)
232 PF04184 ST7: ST7 protein; In 96.1 0.39 8.5E-06 36.2 13.1 82 31-112 263-346 (539)
233 PF04053 Coatomer_WDAD: Coatom 96.1 0.14 3E-06 38.4 10.2 98 4-122 330-427 (443)
234 PF13176 TPR_7: Tetratricopept 96.1 0.022 4.9E-07 26.3 4.1 26 99-124 1-26 (36)
235 KOG0543 FKBP-type peptidyl-pro 96.1 0.13 2.9E-06 37.4 9.5 97 34-133 215-325 (397)
236 PF13176 TPR_7: Tetratricopept 96.1 0.022 4.7E-07 26.3 3.9 23 30-52 2-24 (36)
237 COG5107 RNA14 Pre-mRNA 3'-end 96.0 0.39 8.5E-06 35.9 11.8 92 28-122 398-491 (660)
238 PF09205 DUF1955: Domain of un 95.9 0.19 4.2E-06 30.9 13.1 121 4-128 14-151 (161)
239 PF07035 Mic1: Colon cancer-as 95.9 0.24 5.3E-06 31.8 13.1 103 11-123 13-115 (167)
240 PF00637 Clathrin: Region in C 95.9 0.013 2.8E-07 36.5 3.5 81 2-89 17-97 (143)
241 PF10602 RPN7: 26S proteasome 95.9 0.27 5.9E-06 32.0 9.6 97 27-123 36-139 (177)
242 PF13170 DUF4003: Protein of u 95.8 0.43 9.3E-06 33.8 13.4 125 7-133 77-218 (297)
243 COG3118 Thioredoxin domain-con 95.7 0.45 9.9E-06 33.4 13.9 125 3-130 145-269 (304)
244 PF13431 TPR_17: Tetratricopep 95.7 0.028 6E-07 25.6 3.3 32 85-117 2-33 (34)
245 PF09205 DUF1955: Domain of un 95.6 0.29 6.2E-06 30.2 10.1 85 4-94 68-152 (161)
246 PF13431 TPR_17: Tetratricopep 95.5 0.021 4.6E-07 26.0 2.7 32 15-47 2-33 (34)
247 smart00299 CLH Clathrin heavy 95.5 0.3 6.6E-06 30.2 11.9 103 3-122 18-121 (140)
248 COG1747 Uncharacterized N-term 95.5 0.83 1.8E-05 34.8 12.8 145 24-173 63-223 (711)
249 PF10602 RPN7: 26S proteasome 95.4 0.31 6.8E-06 31.7 8.8 85 63-147 37-140 (177)
250 PF11207 DUF2989: Protein of u 95.4 0.37 8E-06 31.9 8.9 79 38-117 117-198 (203)
251 COG5107 RNA14 Pre-mRNA 3'-end 95.4 0.74 1.6E-05 34.5 11.1 116 6-125 411-530 (660)
252 KOG4555 TPR repeat-containing 95.4 0.33 7.2E-06 29.9 10.3 93 34-127 50-145 (175)
253 KOG2114 Vacuolar assembly/sort 95.4 0.13 2.8E-06 40.9 7.7 83 33-122 374-456 (933)
254 PF07163 Pex26: Pex26 protein; 95.3 0.61 1.3E-05 32.6 9.8 91 30-120 86-181 (309)
255 PF02284 COX5A: Cytochrome c o 94.9 0.38 8.3E-06 28.1 9.6 62 43-105 26-87 (108)
256 PF08631 SPO22: Meiosis protei 94.9 0.86 1.9E-05 32.0 17.4 151 3-155 4-192 (278)
257 PF13929 mRNA_stabil: mRNA sta 94.8 0.91 2E-05 31.9 10.2 98 10-107 184-288 (292)
258 COG4105 ComL DNA uptake lipopr 94.7 0.89 1.9E-05 31.3 17.4 123 3-126 45-196 (254)
259 PF10300 DUF3808: Protein of u 94.7 1.4 3E-05 33.5 14.2 130 30-162 191-346 (468)
260 PF13374 TPR_10: Tetratricopep 94.7 0.13 2.8E-06 24.1 4.3 27 28-54 3-29 (42)
261 KOG0624 dsRNA-activated protei 94.7 1.2 2.5E-05 32.4 13.5 165 3-173 49-241 (504)
262 PF11207 DUF2989: Protein of u 94.7 0.79 1.7E-05 30.4 11.7 73 9-82 123-198 (203)
263 PF13281 DUF4071: Domain of un 94.6 1.3 2.8E-05 32.5 16.0 16 134-149 319-334 (374)
264 PF13374 TPR_10: Tetratricopep 94.4 0.18 3.8E-06 23.6 4.4 28 97-124 2-29 (42)
265 PF04184 ST7: ST7 protein; In 94.4 1.7 3.6E-05 33.1 12.6 59 66-124 263-322 (539)
266 KOG2280 Vacuolar assembly/sort 94.0 0.48 1E-05 37.4 7.8 103 11-123 667-770 (829)
267 cd00923 Cyt_c_Oxidase_Va Cytoc 94.0 0.45 9.7E-06 27.5 5.9 48 42-89 22-69 (103)
268 PF00515 TPR_1: Tetratricopept 94.0 0.25 5.4E-06 22.1 4.3 27 99-125 3-29 (34)
269 PF00515 TPR_1: Tetratricopept 93.9 0.27 5.9E-06 21.9 4.3 27 29-55 3-29 (34)
270 COG3898 Uncharacterized membra 93.7 2.1 4.6E-05 31.6 15.1 30 104-133 270-299 (531)
271 PF04053 Coatomer_WDAD: Coatom 93.6 2.1 4.5E-05 32.3 10.4 97 5-122 274-372 (443)
272 PF13762 MNE1: Mitochondrial s 93.6 1.1 2.4E-05 28.1 9.8 110 5-114 7-132 (145)
273 PF09613 HrpB1_HrpK: Bacterial 93.5 1.2 2.7E-05 28.4 11.6 19 37-55 54-72 (160)
274 KOG0276 Vesicle coat complex C 93.3 3.1 6.8E-05 32.5 10.8 98 4-122 649-746 (794)
275 COG4455 ImpE Protein of avirul 93.3 1.5 3.2E-05 29.7 8.2 69 2-71 11-81 (273)
276 cd00923 Cyt_c_Oxidase_Va Cytoc 93.2 0.96 2.1E-05 26.2 9.5 48 77-124 22-69 (103)
277 KOG1585 Protein required for f 93.2 1.6 3.6E-05 30.0 8.3 14 5-18 44-57 (308)
278 PRK11906 transcriptional regul 92.9 3.1 6.7E-05 31.4 12.4 111 7-120 319-430 (458)
279 PF07719 TPR_2: Tetratricopept 92.7 0.43 9.4E-06 21.1 4.3 26 100-125 4-29 (34)
280 KOG1550 Extracellular protein 92.7 3.8 8.3E-05 31.9 13.5 138 8-150 228-394 (552)
281 KOG0550 Molecular chaperone (D 92.6 1.1 2.4E-05 33.2 7.4 102 3-108 260-368 (486)
282 PRK11906 transcriptional regul 92.6 3.5 7.5E-05 31.1 14.7 137 7-147 273-434 (458)
283 TIGR03504 FimV_Cterm FimV C-te 92.5 0.52 1.1E-05 22.9 4.1 23 68-90 5-27 (44)
284 PF10579 Rapsyn_N: Rapsyn N-te 92.4 0.45 9.8E-06 26.3 4.2 51 33-84 13-65 (80)
285 PF07719 TPR_2: Tetratricopept 92.4 0.49 1.1E-05 20.9 4.4 26 65-90 4-29 (34)
286 COG0735 Fur Fe2+/Zn2+ uptake r 92.4 1.8 3.8E-05 27.2 7.4 64 13-77 7-70 (145)
287 COG3898 Uncharacterized membra 92.4 3.5 7.6E-05 30.6 15.7 117 5-126 97-217 (531)
288 PF07035 Mic1: Colon cancer-as 92.3 2 4.4E-05 27.7 10.1 96 47-146 14-115 (167)
289 COG4455 ImpE Protein of avirul 92.1 1.2 2.5E-05 30.2 6.5 79 29-108 3-83 (273)
290 KOG0550 Molecular chaperone (D 92.0 3.9 8.5E-05 30.5 10.9 126 5-133 216-357 (486)
291 KOG3617 WD40 and TPR repeat-co 92.0 2.9 6.4E-05 34.1 9.5 117 4-123 838-993 (1416)
292 PF02284 COX5A: Cytochrome c o 92.0 1.5 3.3E-05 25.7 8.1 47 79-125 27-73 (108)
293 KOG1586 Protein required for f 92.0 2.1 4.5E-05 29.4 7.6 16 134-149 168-183 (288)
294 PF07079 DUF1347: Protein of u 91.8 4.5 9.8E-05 30.6 13.9 120 3-126 17-157 (549)
295 PF11846 DUF3366: Domain of un 91.7 1.7 3.8E-05 28.6 7.2 30 95-124 142-171 (193)
296 COG4649 Uncharacterized protei 91.7 2.6 5.6E-05 27.6 11.7 128 26-154 58-201 (221)
297 KOG4648 Uncharacterized conser 91.7 1.5 3.2E-05 31.8 7.0 87 35-124 105-192 (536)
298 COG3947 Response regulator con 91.6 1.9 4.1E-05 30.5 7.4 98 25-124 242-340 (361)
299 TIGR03504 FimV_Cterm FimV C-te 91.6 0.54 1.2E-05 22.9 3.6 25 102-126 4-28 (44)
300 PRK15180 Vi polysaccharide bio 91.5 3.3 7.2E-05 31.6 8.9 88 37-126 333-420 (831)
301 PF13181 TPR_8: Tetratricopept 91.5 0.67 1.5E-05 20.5 4.3 27 99-125 3-29 (34)
302 PF07079 DUF1347: Protein of u 91.4 5 0.00011 30.4 14.9 101 7-110 60-180 (549)
303 KOG1130 Predicted G-alpha GTPa 91.3 4.4 9.4E-05 30.4 9.1 148 4-151 207-370 (639)
304 PF14689 SPOB_a: Sensor_kinase 91.1 0.98 2.1E-05 23.8 4.5 47 7-55 5-51 (62)
305 PF07721 TPR_4: Tetratricopept 91.0 0.48 1E-05 19.9 2.8 7 75-81 14-20 (26)
306 COG0457 NrfG FOG: TPR repeat [ 91.0 3 6.5E-05 27.0 13.9 145 4-149 107-265 (291)
307 PF13174 TPR_6: Tetratricopept 90.8 0.72 1.6E-05 20.1 3.5 21 70-90 8-28 (33)
308 cd00280 TRFH Telomeric Repeat 90.5 3.5 7.6E-05 27.1 7.5 64 8-74 85-155 (200)
309 PF13181 TPR_8: Tetratricopept 90.4 0.91 2E-05 20.0 4.2 25 30-54 4-28 (34)
310 KOG4648 Uncharacterized conser 90.3 1.3 2.8E-05 32.1 5.7 87 2-91 107-194 (536)
311 KOG1538 Uncharacterized conser 90.3 8.1 0.00017 30.8 10.6 75 98-174 748-836 (1081)
312 PF07163 Pex26: Pex26 protein; 90.0 5.2 0.00011 28.2 8.9 85 1-85 92-181 (309)
313 KOG4077 Cytochrome c oxidase, 89.6 3.3 7.2E-05 25.4 7.3 45 45-89 67-111 (149)
314 COG2976 Uncharacterized protei 89.5 4.6 9.9E-05 26.9 11.1 81 70-150 97-189 (207)
315 KOG2280 Vacuolar assembly/sort 89.2 3.2 7E-05 33.2 7.5 99 5-122 697-795 (829)
316 COG3947 Response regulator con 88.9 4.1 8.8E-05 29.0 7.1 63 60-126 242-308 (361)
317 PF08631 SPO22: Meiosis protei 88.7 6.5 0.00014 27.6 16.7 94 28-124 85-184 (278)
318 COG0735 Fur Fe2+/Zn2+ uptake r 88.2 4.7 0.0001 25.3 7.0 64 48-112 7-70 (145)
319 KOG4077 Cytochrome c oxidase, 88.1 3.8 8.2E-05 25.2 5.8 46 80-125 67-112 (149)
320 COG0457 NrfG FOG: TPR repeat [ 88.1 5.2 0.00011 25.8 14.2 121 5-126 72-196 (291)
321 KOG2114 Vacuolar assembly/sort 88.0 4.1 8.9E-05 33.1 7.4 78 3-87 379-456 (933)
322 TIGR02561 HrpB1_HrpK type III 88.0 5 0.00011 25.4 10.1 52 39-92 22-74 (153)
323 PF09986 DUF2225: Uncharacteri 87.9 5.2 0.00011 27.0 7.2 67 78-144 141-212 (214)
324 KOG4234 TPR repeat-containing 87.9 6.4 0.00014 26.5 9.8 93 34-127 102-198 (271)
325 PRK11639 zinc uptake transcrip 87.8 5.6 0.00012 25.7 7.8 61 18-79 17-77 (169)
326 PF11848 DUF3368: Domain of un 87.7 2.2 4.9E-05 21.1 4.8 31 39-69 14-44 (48)
327 COG2976 Uncharacterized protei 87.3 6.7 0.00014 26.1 12.4 90 33-127 95-189 (207)
328 PF11848 DUF3368: Domain of un 86.4 2.7 5.9E-05 20.8 5.0 38 69-106 9-46 (48)
329 PF11846 DUF3366: Domain of un 86.0 7.7 0.00017 25.5 7.7 57 36-92 117-174 (193)
330 TIGR02508 type_III_yscG type I 86.0 5.2 0.00011 23.5 7.5 50 70-125 47-96 (115)
331 cd08819 CARD_MDA5_2 Caspase ac 85.9 4.6 0.0001 22.9 7.3 65 46-116 21-85 (88)
332 PRK10564 maltose regulon perip 85.8 2.9 6.2E-05 29.7 5.1 43 60-102 254-297 (303)
333 PF10579 Rapsyn_N: Rapsyn N-te 85.5 4.5 9.8E-05 22.5 5.4 48 74-121 18-67 (80)
334 KOG2610 Uncharacterized conser 85.3 12 0.00027 27.3 10.2 119 3-122 148-272 (491)
335 smart00028 TPR Tetratricopepti 85.2 1.9 4E-05 17.8 3.7 26 99-124 3-28 (34)
336 PF10475 DUF2450: Protein of u 85.2 5 0.00011 28.4 6.3 100 69-174 105-216 (291)
337 KOG1258 mRNA processing protei 85.2 16 0.00035 28.6 17.2 162 4-169 309-489 (577)
338 cd07153 Fur_like Ferric uptake 85.0 4.1 8.9E-05 24.2 5.1 46 33-78 6-51 (116)
339 KOG4507 Uncharacterized conser 85.0 16 0.00035 28.9 9.0 100 5-106 620-719 (886)
340 COG3118 Thioredoxin domain-con 84.7 12 0.00026 26.7 14.6 134 33-170 140-287 (304)
341 KOG1550 Extracellular protein 84.5 18 0.00038 28.4 13.6 121 2-127 259-394 (552)
342 COG4785 NlpI Lipoprotein NlpI, 84.5 11 0.00023 25.9 8.5 52 96-147 98-160 (297)
343 TIGR02561 HrpB1_HrpK type III 84.5 8.1 0.00018 24.5 9.4 67 63-130 8-77 (153)
344 cd08819 CARD_MDA5_2 Caspase ac 84.5 5.6 0.00012 22.6 7.4 68 10-83 20-87 (88)
345 PF13762 MNE1: Mitochondrial s 84.4 4.4 9.6E-05 25.5 5.1 55 25-79 77-132 (145)
346 KOG1941 Acetylcholine receptor 83.8 10 0.00022 28.0 7.2 119 4-123 134-272 (518)
347 PRK10564 maltose regulon perip 83.7 4 8.7E-05 29.0 5.1 45 25-69 254-299 (303)
348 PF01475 FUR: Ferric uptake re 83.6 3.4 7.4E-05 24.8 4.4 46 32-77 12-57 (120)
349 PF11663 Toxin_YhaV: Toxin wit 83.2 2.1 4.5E-05 26.5 3.2 29 76-106 109-137 (140)
350 PRK15180 Vi polysaccharide bio 82.7 20 0.00044 27.7 12.3 111 35-148 297-419 (831)
351 PF14689 SPOB_a: Sensor_kinase 82.7 5.3 0.00011 21.0 5.3 24 100-123 26-49 (62)
352 KOG4234 TPR repeat-containing 82.6 12 0.00027 25.2 8.8 89 3-93 106-199 (271)
353 KOG4567 GTPase-activating prot 82.5 16 0.00034 26.3 7.9 71 47-122 263-343 (370)
354 PRK09462 fur ferric uptake reg 82.4 9.8 0.00021 23.9 7.6 61 17-78 7-68 (148)
355 cd00280 TRFH Telomeric Repeat 82.2 12 0.00026 24.7 9.0 48 78-125 85-139 (200)
356 PF13934 ELYS: Nuclear pore co 81.8 14 0.0003 25.2 9.1 20 68-87 114-133 (226)
357 PF10255 Paf67: RNA polymerase 81.8 17 0.00037 27.2 8.0 59 66-124 126-191 (404)
358 KOG1538 Uncharacterized conser 81.5 22 0.00048 28.6 8.6 89 27-126 747-846 (1081)
359 PF11817 Foie-gras_1: Foie gra 81.5 15 0.00032 25.4 8.1 59 66-124 182-245 (247)
360 KOG2908 26S proteasome regulat 81.1 19 0.00041 26.3 10.3 88 29-116 77-176 (380)
361 COG5159 RPN6 26S proteasome re 81.0 18 0.00038 25.9 10.9 121 3-123 14-151 (421)
362 PF02847 MA3: MA3 domain; Int 80.8 7.5 0.00016 22.9 5.1 61 31-93 6-68 (113)
363 PF07575 Nucleopor_Nup85: Nup8 80.7 5.3 0.00012 31.3 5.4 23 134-156 509-531 (566)
364 KOG3807 Predicted membrane pro 80.3 21 0.00044 26.2 8.0 56 67-122 280-336 (556)
365 PF08311 Mad3_BUB1_I: Mad3/BUB 80.0 11 0.00024 23.0 5.8 43 45-87 81-124 (126)
366 PF11838 ERAP1_C: ERAP1-like C 79.9 19 0.00041 25.6 13.0 110 8-121 146-261 (324)
367 KOG2063 Vacuolar assembly/sort 79.7 35 0.00076 28.5 10.2 104 64-167 506-638 (877)
368 PRK11639 zinc uptake transcrip 79.5 14 0.00031 23.9 7.2 63 52-115 16-78 (169)
369 PF03745 DUF309: Domain of unk 78.9 7.6 0.00016 20.4 5.7 32 74-105 11-42 (62)
370 cd07153 Fur_like Ferric uptake 78.9 8.1 0.00018 22.9 4.8 48 67-114 5-52 (116)
371 PF09613 HrpB1_HrpK: Bacterial 78.3 15 0.00033 23.6 10.8 59 32-92 15-74 (160)
372 KOG1585 Protein required for f 78.3 20 0.00044 25.0 7.5 87 27-123 31-117 (308)
373 PF06552 TOM20_plant: Plant sp 77.8 17 0.00037 23.9 8.5 112 8-128 7-138 (186)
374 KOG2063 Vacuolar assembly/sort 77.7 41 0.00088 28.2 13.2 109 2-110 514-639 (877)
375 PF11663 Toxin_YhaV: Toxin wit 77.4 3.4 7.4E-05 25.6 2.8 30 134-165 109-138 (140)
376 PF09797 NatB_MDM20: N-acetylt 77.3 24 0.00052 25.9 7.7 46 10-56 201-246 (365)
377 PRK09462 fur ferric uptake reg 77.3 15 0.00033 23.0 7.0 62 51-113 6-68 (148)
378 PF14669 Asp_Glu_race_2: Putat 77.3 11 0.00023 25.2 5.1 56 31-86 136-205 (233)
379 smart00386 HAT HAT (Half-A-TPR 77.3 4.7 0.0001 17.1 4.0 29 76-105 1-29 (33)
380 PF09454 Vps23_core: Vps23 cor 77.1 7.7 0.00017 20.7 3.8 50 24-74 5-54 (65)
381 KOG4567 GTPase-activating prot 76.3 26 0.00057 25.3 7.5 45 82-126 263-307 (370)
382 COG4003 Uncharacterized protei 75.9 6.4 0.00014 22.0 3.3 26 32-57 36-61 (98)
383 KOG1308 Hsp70-interacting prot 75.2 3.2 6.9E-05 30.1 2.6 94 4-100 126-220 (377)
384 KOG1130 Predicted G-alpha GTPa 75.1 3.3 7.1E-05 31.0 2.7 50 2-51 27-79 (639)
385 PF12862 Apc5: Anaphase-promot 74.9 13 0.00029 21.2 6.2 18 72-89 51-68 (94)
386 PF10345 Cohesin_load: Cohesin 74.7 42 0.0009 26.8 15.8 158 9-167 38-235 (608)
387 COG5108 RPO41 Mitochondrial DN 74.6 40 0.00086 27.4 8.2 72 32-106 33-112 (1117)
388 KOG1586 Protein required for f 74.1 27 0.00058 24.3 13.0 61 73-133 165-231 (288)
389 PF10366 Vps39_1: Vacuolar sor 74.0 16 0.00035 21.7 7.8 26 65-90 42-67 (108)
390 PRK09857 putative transposase; 73.4 31 0.00066 24.7 8.3 66 65-131 209-274 (292)
391 PF01475 FUR: Ferric uptake re 73.3 9.4 0.0002 22.9 4.1 48 66-113 11-58 (120)
392 PF12796 Ank_2: Ankyrin repeat 73.2 11 0.00024 20.8 4.2 8 71-78 32-39 (89)
393 PF09477 Type_III_YscG: Bacter 73.1 17 0.00037 21.7 8.9 75 42-123 21-95 (116)
394 KOG0276 Vesicle coat complex C 73.0 46 0.001 26.6 9.3 77 61-146 665-747 (794)
395 COG5159 RPN6 26S proteasome re 72.9 32 0.0007 24.7 8.4 53 32-84 8-67 (421)
396 PF08424 NRDE-2: NRDE-2, neces 72.6 34 0.00073 24.8 14.5 141 8-150 47-210 (321)
397 PF12926 MOZART2: Mitotic-spin 72.5 15 0.00033 20.8 7.8 43 83-125 29-71 (88)
398 PF11768 DUF3312: Protein of u 72.4 45 0.00097 26.1 8.2 103 68-176 414-544 (545)
399 PF10366 Vps39_1: Vacuolar sor 72.1 18 0.00039 21.5 7.4 49 99-147 41-93 (108)
400 KOG2041 WD40 repeat protein [G 70.5 58 0.0013 26.7 8.5 16 6-21 748-763 (1189)
401 PF08424 NRDE-2: NRDE-2, neces 70.1 39 0.00084 24.5 17.0 129 24-154 16-189 (321)
402 PF12926 MOZART2: Mitotic-spin 70.1 18 0.00039 20.6 7.8 63 26-90 9-71 (88)
403 PF06552 TOM20_plant: Plant sp 70.0 29 0.00062 22.9 9.1 70 78-166 51-124 (186)
404 KOG2396 HAT (Half-A-TPR) repea 69.9 50 0.0011 25.7 11.5 89 10-101 89-178 (568)
405 KOG2908 26S proteasome regulat 69.6 42 0.0009 24.7 8.3 76 5-80 88-175 (380)
406 COG3763 Uncharacterized protei 68.6 17 0.00036 19.7 5.6 42 12-53 26-67 (71)
407 KOG1920 IkappaB kinase complex 68.4 34 0.00075 29.4 7.1 21 102-122 1004-1024(1265)
408 PF06368 Met_asp_mut_E: Methyl 68.2 18 0.00039 27.2 5.1 48 41-91 29-76 (441)
409 KOG4507 Uncharacterized conser 67.9 32 0.0007 27.4 6.5 88 38-126 618-705 (886)
410 TIGR01503 MthylAspMut_E methyl 67.8 54 0.0012 25.2 9.9 87 42-132 69-169 (480)
411 PF09454 Vps23_core: Vps23 cor 67.6 17 0.00037 19.4 4.4 51 59-110 5-55 (65)
412 PHA02875 ankyrin repeat protei 67.4 49 0.0011 24.6 9.0 67 15-85 18-88 (413)
413 PF02847 MA3: MA3 domain; Int 67.0 23 0.00051 20.8 7.3 53 3-57 13-67 (113)
414 TIGR02508 type_III_yscG type I 66.3 25 0.00054 20.8 8.4 87 7-101 20-106 (115)
415 PF15297 CKAP2_C: Cytoskeleton 65.5 52 0.0011 24.2 7.7 43 65-107 143-185 (353)
416 KOG0890 Protein kinase of the 65.4 62 0.0013 30.3 8.3 107 4-119 1395-1505(2382)
417 PF10475 DUF2450: Protein of u 64.7 48 0.0011 23.6 9.4 86 27-117 127-217 (291)
418 PF03745 DUF309: Domain of unk 64.6 19 0.00042 18.9 5.5 49 37-85 9-62 (62)
419 PRK09857 putative transposase; 64.5 50 0.0011 23.6 9.3 21 134-154 254-274 (292)
420 KOG2041 WD40 repeat protein [G 64.3 15 0.00033 29.7 4.4 24 98-121 797-820 (1189)
421 PF02259 FAT: FAT domain; Int 64.3 51 0.0011 23.7 12.1 66 25-90 144-212 (352)
422 KOG2471 TPR repeat-containing 64.2 35 0.00075 26.5 5.9 106 4-110 252-382 (696)
423 COG4785 NlpI Lipoprotein NlpI, 63.3 47 0.001 22.9 9.1 35 23-57 94-129 (297)
424 COG2178 Predicted RNA-binding 63.2 43 0.00093 22.4 8.6 27 28-54 30-56 (204)
425 PRK08691 DNA polymerase III su 62.6 86 0.0019 25.7 10.6 74 55-131 193-279 (709)
426 KOG0890 Protein kinase of the 62.4 1.1E+02 0.0024 28.9 9.2 92 32-129 1388-1481(2382)
427 PF09670 Cas_Cas02710: CRISPR- 61.9 65 0.0014 24.1 10.0 51 4-55 143-197 (379)
428 COG5108 RPO41 Mitochondrial DN 61.7 89 0.0019 25.6 8.6 48 67-114 33-82 (1117)
429 KOG1166 Mitotic checkpoint ser 61.4 75 0.0016 27.1 7.8 63 38-100 89-152 (974)
430 PF09477 Type_III_YscG: Bacter 61.0 34 0.00073 20.5 9.0 86 7-100 21-106 (116)
431 KOG2471 TPR repeat-containing 60.5 31 0.00067 26.8 5.2 96 72-168 250-382 (696)
432 KOG4521 Nuclear pore complex, 60.4 1.2E+02 0.0026 26.6 13.2 161 1-174 929-1121(1480)
433 PF12862 Apc5: Anaphase-promot 60.4 30 0.00064 19.7 6.9 54 72-125 8-69 (94)
434 COG5187 RPN7 26S proteasome re 60.1 63 0.0014 23.4 11.0 73 61-133 114-191 (412)
435 PF09868 DUF2095: Uncharacteri 60.1 36 0.00078 20.5 5.2 24 69-92 68-91 (128)
436 COG2405 Predicted nucleic acid 60.0 30 0.00064 21.8 4.2 40 68-107 115-154 (157)
437 KOG4642 Chaperone-dependent E3 59.9 57 0.0012 22.8 9.2 114 5-122 23-142 (284)
438 PF11817 Foie-gras_1: Foie gra 59.5 56 0.0012 22.6 8.1 43 80-124 163-205 (247)
439 KOG4642 Chaperone-dependent E3 59.5 58 0.0013 22.8 11.1 83 37-123 20-104 (284)
440 cd08790 DED_DEDD Death Effecto 59.3 19 0.00042 20.9 3.2 57 38-96 35-91 (97)
441 KOG1941 Acetylcholine receptor 59.2 74 0.0016 23.9 8.9 108 67-174 127-265 (518)
442 cd08318 Death_NMPP84 Death dom 59.2 31 0.00066 19.5 4.2 22 98-119 64-85 (86)
443 PF14561 TPR_20: Tetratricopep 59.1 32 0.00069 19.6 8.5 31 96-126 21-51 (90)
444 COG1747 Uncharacterized N-term 58.5 90 0.0019 24.6 12.1 48 7-57 81-128 (711)
445 KOG3364 Membrane protein invol 58.5 44 0.00095 21.0 10.6 68 59-126 29-100 (149)
446 PF11123 DNA_Packaging_2: DNA 57.5 31 0.00067 19.0 4.6 32 78-110 13-44 (82)
447 PF04910 Tcf25: Transcriptiona 57.5 76 0.0017 23.5 9.3 54 2-55 113-167 (360)
448 KOG4814 Uncharacterized conser 57.5 1E+02 0.0022 25.0 7.7 84 4-89 366-455 (872)
449 PF09986 DUF2225: Uncharacteri 57.2 58 0.0013 22.1 11.6 93 2-94 87-197 (214)
450 TIGR02878 spore_ypjB sporulati 56.8 62 0.0013 22.3 9.3 19 2-20 15-33 (233)
451 KOG1920 IkappaB kinase complex 56.8 98 0.0021 27.0 7.7 17 106-122 1035-1051(1265)
452 PF02607 B12-binding_2: B12 bi 56.4 20 0.00044 19.5 3.0 32 76-107 15-46 (79)
453 KOG2297 Predicted translation 56.3 76 0.0017 23.1 6.3 66 8-82 271-341 (412)
454 COG4259 Uncharacterized protei 56.3 40 0.00087 19.9 5.8 45 47-91 57-101 (121)
455 PRK13342 recombination factor 56.0 86 0.0019 23.6 14.1 101 9-111 154-279 (413)
456 PF04090 RNA_pol_I_TF: RNA pol 55.9 60 0.0013 21.8 7.3 29 28-56 42-70 (199)
457 PRK14958 DNA polymerase III su 55.9 98 0.0021 24.2 11.9 75 19-96 192-279 (509)
458 KOG0376 Serine-threonine phosp 55.7 75 0.0016 24.5 6.5 90 33-125 10-100 (476)
459 PHA02537 M terminase endonucle 55.5 66 0.0014 22.2 9.9 30 30-59 86-115 (230)
460 PRK07003 DNA polymerase III su 55.4 1.2E+02 0.0027 25.3 10.4 72 57-131 195-279 (830)
461 COG2405 Predicted nucleic acid 55.1 37 0.00081 21.4 4.1 39 34-72 116-154 (157)
462 PF14853 Fis1_TPR_C: Fis1 C-te 54.4 28 0.00061 17.6 5.3 24 33-56 7-30 (53)
463 PRK00523 hypothetical protein; 54.4 35 0.00075 18.6 5.7 43 46-88 26-68 (72)
464 COG1466 HolA DNA polymerase II 54.0 83 0.0018 22.9 10.0 35 53-89 153-187 (334)
465 PF14840 DNA_pol3_delt_C: Proc 53.9 17 0.00036 22.3 2.6 26 5-30 10-35 (125)
466 PRK07003 DNA polymerase III su 53.5 1.3E+02 0.0029 25.1 12.6 84 9-95 181-278 (830)
467 COG0819 TenA Putative transcri 53.3 70 0.0015 21.8 9.2 25 22-46 104-128 (218)
468 PRK14963 DNA polymerase III su 53.2 1.1E+02 0.0024 24.0 10.6 85 45-132 179-276 (504)
469 TIGR01503 MthylAspMut_E methyl 52.8 1.1E+02 0.0023 23.7 7.6 76 42-126 29-115 (480)
470 PF02259 FAT: FAT domain; Int 52.5 85 0.0018 22.6 11.3 54 2-55 156-212 (352)
471 PRK10941 hypothetical protein; 52.4 82 0.0018 22.3 8.4 71 62-133 181-251 (269)
472 TIGR03362 VI_chp_7 type VI sec 51.2 56 0.0012 23.6 5.1 55 70-124 221-277 (301)
473 PF10155 DUF2363: Uncharacteri 50.9 57 0.0012 20.1 12.4 112 6-124 3-125 (126)
474 COG2987 HutU Urocanate hydrata 50.8 24 0.00052 26.9 3.3 46 110-156 216-261 (561)
475 PF09797 NatB_MDM20: N-acetylt 50.8 99 0.0021 22.8 6.6 67 31-98 184-253 (365)
476 KOG2396 HAT (Half-A-TPR) repea 50.8 1.2E+02 0.0026 23.8 10.0 78 46-125 90-168 (568)
477 PF00531 Death: Death domain; 50.3 41 0.00089 18.3 3.9 39 44-84 41-79 (83)
478 COG0320 LipA Lipoate synthase 50.3 22 0.00048 25.1 2.9 49 76-128 194-242 (306)
479 PF02184 HAT: HAT (Half-A-TPR) 50.3 25 0.00054 15.8 3.1 24 7-32 2-25 (32)
480 PF04097 Nic96: Nup93/Nic96; 50.2 47 0.001 26.6 5.1 85 2-88 424-531 (613)
481 COG0819 TenA Putative transcri 49.9 81 0.0018 21.5 7.9 91 56-147 103-204 (218)
482 KOG0989 Replication factor C, 49.8 1E+02 0.0022 22.6 10.1 76 54-131 202-289 (346)
483 PF04348 LppC: LppC putative l 49.6 5.5 0.00012 31.0 0.0 112 11-123 8-124 (536)
484 KOG0687 26S proteasome regulat 49.1 1.1E+02 0.0023 22.7 13.0 85 63-147 105-208 (393)
485 PRK14958 DNA polymerase III su 49.0 1.3E+02 0.0028 23.6 10.8 77 53-132 191-280 (509)
486 PRK13341 recombination factor 48.9 1.5E+02 0.0033 24.5 13.5 31 57-89 192-222 (725)
487 KOG4814 Uncharacterized conser 48.4 1.5E+02 0.0033 24.2 9.9 94 29-125 357-456 (872)
488 PRK08691 DNA polymerase III su 48.1 1.6E+02 0.0034 24.3 12.8 84 10-96 182-279 (709)
489 COG5210 GTPase-activating prot 47.7 1E+02 0.0023 23.9 6.5 59 48-106 363-421 (496)
490 PF04910 Tcf25: Transcriptiona 47.7 1.1E+02 0.0025 22.6 12.3 120 6-125 8-167 (360)
491 PRK14963 DNA polymerase III su 47.3 1.4E+02 0.003 23.4 10.8 85 9-96 178-275 (504)
492 KOG1166 Mitotic checkpoint ser 47.2 80 0.0017 27.0 6.0 66 5-70 91-157 (974)
493 KOG1464 COP9 signalosome, subu 47.1 1.1E+02 0.0023 22.1 13.6 123 4-126 39-174 (440)
494 KOG0292 Vesicle coat complex C 46.7 1.9E+02 0.004 24.8 7.9 130 2-152 653-785 (1202)
495 PF10345 Cohesin_load: Cohesin 46.6 1.5E+02 0.0033 23.7 11.9 113 11-123 118-251 (608)
496 cd08315 Death_TRAILR_DR4_DR5 D 46.5 58 0.0013 18.9 5.7 27 63-89 65-91 (96)
497 PF14669 Asp_Glu_race_2: Putat 45.6 93 0.002 21.0 11.0 34 100-133 135-168 (233)
498 PF07443 HARP: HepA-related pr 44.8 8.5 0.00018 19.8 0.2 29 79-107 9-37 (55)
499 PF03672 UPF0154: Uncharacteri 44.7 50 0.0011 17.6 5.6 43 11-53 18-60 (64)
500 KOG1258 mRNA processing protei 44.7 1.6E+02 0.0035 23.5 13.0 52 72-124 89-141 (577)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-35 Score=229.01 Aligned_cols=174 Identities=18% Similarity=0.347 Sum_probs=132.7
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+|++.|++++|.++|+.|.+.|++|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++++|++.|++++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 36677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~ 148 (176)
|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.|+.. |++++|.++|++|.+
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777655 777888888888877
Q ss_pred CCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 149 NGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 149 ~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.|+.||..||++++.+|++.|++++|
T Consensus 748 ~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 748 LGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 77788888888888888877777665
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.5e-35 Score=228.31 Aligned_cols=173 Identities=23% Similarity=0.399 Sum_probs=96.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 482 y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHh--cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHH
Q 030489 82 TMMFSKMLE--KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSML 147 (176)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~ 147 (176)
.++|++|.. .++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+.. |++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555555543 3455555555555555555555555555555555555555443 55555555555555
Q ss_pred HCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 148 RNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 148 ~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+.|+.||..||++++.+|++.|+.++|
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 555555555555555555555554443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=216.01 Aligned_cols=170 Identities=24% Similarity=0.371 Sum_probs=129.5
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 36677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~ 148 (176)
|.++|++|. .||..+||.||.+|++.|+.++|.++|++|.+.|+.|+.. |..++|.++|+.|.+
T Consensus 379 A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 777777774 3577777777777777777777777777777777777766 777777777777764
Q ss_pred -CCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 149 -NGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 149 -~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.|+.|+..+|+.++.+|++.|++++|
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 57777777777777777777777765
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=214.30 Aligned_cols=170 Identities=22% Similarity=0.381 Sum_probs=159.4
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+|++.|++++|.++|+.|. ++|..+||+++.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++
T Consensus 268 ~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 4789999999999999996 458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC--------CChHHHHHHHHHHHHCCCC
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------~~~~~a~~~~~~m~~~g~~ 152 (176)
|.++++.|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+.+...... |+.++|+++|++|.+.|+.
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999997644433322 9999999999999999999
Q ss_pred CcHHHHHHHHHHhhcccCcccc
Q 030489 153 PDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 153 p~~~~~~~l~~~~~~~g~~~~A 174 (176)
||..||++++.+|++.|.+++|
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999999998876
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=7.2e-31 Score=204.89 Aligned_cols=174 Identities=23% Similarity=0.344 Sum_probs=138.5
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 46778888888888888888888888888888888888888888888888888888887777777777777777777777
Q ss_pred HHHHHHHHHhcC------------------------------C-------------------------------------
Q 030489 81 ATMMFSKMLEKG------------------------------P------------------------------------- 93 (176)
Q Consensus 81 a~~~~~~~~~~~------------------------------~------------------------------------- 93 (176)
|.++|++|.+.+ +
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 777776654321 1
Q ss_pred ----------------------------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------
Q 030489 94 ----------------------------KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133 (176)
Q Consensus 94 ----------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------ 133 (176)
.||..+||.+|.+|++.|+.++|.++|++|.+.|+.|+..
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 3456667788888888888888888888888888888876
Q ss_pred CChHHHHHHHHHHH-HCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 GRPTEAMQLYDSML-RNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ~~~~~a~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
|.+++|+++|+.|. +.|+.|+..+|+.++.+|++.|++++|
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888 678888888888888888888888776
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=6.4e-31 Score=205.16 Aligned_cols=170 Identities=18% Similarity=0.287 Sum_probs=132.8
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 35677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~ 148 (176)
|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.|+.. |+.++|.++++.|.+
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 777777774 3577778888888888888888888888887777777766 778888888888888
Q ss_pred CCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 149 NGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 149 ~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.|+.|+..+|++|+.+|++.|++++|
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888888877765
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.68 E-value=1.8e-16 Score=81.02 Aligned_cols=49 Identities=45% Similarity=1.006 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHH
Q 030489 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73 (176)
Q Consensus 25 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 73 (176)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.68 E-value=8.6e-15 Score=105.86 Aligned_cols=120 Identities=22% Similarity=0.215 Sum_probs=54.0
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh----hhHHHHHHHHHhcCCH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS----ITFTILIDAFCKEGRM 78 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~ 78 (176)
.+.|++++|+++|+++.+.. +++..+++.++..+.+.|++++|++.++.+.+.+..++. ..+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 34455555555555554432 224445555555555555555555555555443221111 1222333344444555
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
++|...|+++.+.... +...+..+...|.+.|++++|.++++++.
T Consensus 197 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 197 DAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555544443211 33344444444444445555544444444
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.67 E-value=3.6e-16 Score=79.93 Aligned_cols=50 Identities=36% Similarity=0.788 Sum_probs=48.7
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 030489 60 PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (176)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (176)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=2.5e-14 Score=103.50 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=68.0
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC---hhhHHHHHHHHHhcCCHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN---SITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~ 80 (176)
..|++++|...|.++.+.+ +.+..++..+...+...|++++|+.+++.+...+..++ ..++..+...|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3456666666666666553 22445566666666666666666666666555322111 1344555556666666666
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+...
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 666666665542 234555666666666666666666666655543
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.58 E-value=5.1e-13 Score=105.17 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=102.6
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+.|++++|.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+..++..+...|.+.|+.++|.+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 4455555555555555442 222444455555555555555555555555432 2345555556666666666666666
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCC
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNG 150 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g 150 (176)
+|+++.+..+ .+..+++.+...+.+.|+ .+|+..+++.... .|+.. |++++|.++++++.+.+
T Consensus 792 ~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 792 HYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666665543 356666666666666666 5566666666543 22222 99999999999999765
Q ss_pred CCCcHHHHHHHHHHhhcccCcccc
Q 030489 151 IMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 151 ~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.. +..++..+..++.+.|+.++|
T Consensus 868 ~~-~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 868 PE-AAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHH
Confidence 43 788999999999999998876
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.57 E-value=6.2e-13 Score=104.68 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=92.9
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.|++++|.++++.+.+.. +.+..+|..+..++...|++++|+..|+.+.+.. +.+...+..+..++.+.|++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 34556666666666655442 3355566666666666666666666666665443 224445555566666666666666
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCCC
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNGI 151 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g~ 151 (176)
.+|+++.+.... +..++..+...+...|++++|..+++.+.......... |++++|.+.|+++...
T Consensus 656 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 732 (899)
T TIGR02917 656 TSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-- 732 (899)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 666666554322 45555666666666666666666666555433211111 6666666666666544
Q ss_pred CCcHHHHHHHHHHhhcccCcccc
Q 030489 152 MPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 152 ~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.|+..++..+..++.+.|+.++|
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHH
Confidence 34445555555555555555544
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=2.4e-11 Score=81.43 Aligned_cols=170 Identities=12% Similarity=0.107 Sum_probs=135.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.+++..+.. +.+...+..+...+...|++++|++.+++..+... .+...+..+...+...|++++|
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHH
Confidence 457899999999999998764 44678888999999999999999999999887643 3566778888999999999999
Q ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~ 149 (176)
.+.+++..+... ......+..+...+...|++++|...+++........... |++++|.+.+++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999986532 2245567778889999999999999999987653221111 9999999999999866
Q ss_pred CCCCcHHHHHHHHHHhhcccCcccc
Q 030489 150 GIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 150 g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
...+...+..+...+...|+.+.|
T Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 199 -YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred -CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 344556667777888787877654
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=3.3e-11 Score=92.15 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=116.8
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
...|++++|...|+...+.. +.+..+|..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|.
T Consensus 376 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 45677777777777776653 3356777777777777777777777777776653 224556666677777888888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC------------------CCChHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------------AGRPTEAMQLYD 144 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------------------~~~~~~a~~~~~ 144 (176)
..|++..+..+ .+...|+.+...+...|++++|...|++.......... .+++++|.++++
T Consensus 454 ~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 454 ATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88887776543 36777888888888888888888888877654322111 177888888888
Q ss_pred HHHHCCCCCcH-HHHHHHHHHhhcccCcccc
Q 030489 145 SMLRNGIMPDG-LLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 145 ~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 174 (176)
+.... .|+. ..+..+...+.+.|+.++|
T Consensus 533 kAl~l--~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 533 KALII--DPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHccCHHHH
Confidence 87754 3443 4677788888888888776
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=4.9e-12 Score=87.79 Aligned_cols=168 Identities=23% Similarity=0.256 Sum_probs=100.5
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
...+++++|.+++....+. .++...+...+..+.+.++++++.++++..... ..+.+...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4678899999998877665 356777888999999999999999999997754 2355778888888999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCCC----------CChHHHHHHHHHHHHCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNIA----------GRPTEAMQLYDSMLRNG 150 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~----------~~~~~a~~~~~~m~~~g 150 (176)
.+.+++..+..+. |....+.++..+...|+.+++.++++...... ..|... |+.++|+.+|++....
T Consensus 166 ~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~- 243 (280)
T PF13429_consen 166 LRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL- 243 (280)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-
Confidence 9999999998654 78889999999999999999999998876653 112111 9999999999999864
Q ss_pred CCC-cHHHHHHHHHHhhcccCccccC
Q 030489 151 IMP-DGLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 151 ~~p-~~~~~~~l~~~~~~~g~~~~A~ 175 (176)
.| |+.+...+..++...|+.++|.
T Consensus 244 -~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 244 -NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp -STT-HHHHHHHHHHHT---------
T ss_pred -ccccccccccccccccccccccccc
Confidence 44 6777789999999999999874
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.2e-11 Score=87.39 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=94.8
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH-
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD- 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~- 80 (176)
+|+--+.+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|.+....||..|||+++++..+.|+++.
T Consensus 217 l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~a 292 (625)
T KOG4422|consen 217 LCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDA 292 (625)
T ss_pred HHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHH
Confidence 4555677889999998887767889999999888765333 27788899999999999999999999999997654
Q ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 030489 81 ---ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS-AFDVYEEM 123 (176)
Q Consensus 81 ---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 123 (176)
|.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++
T Consensus 293 r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 293 RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 56788899999999999999999999988888755 33444444
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.40 E-value=8.2e-11 Score=90.37 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=102.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH--
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD-- 80 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-- 80 (176)
.+.|++++|...++.+.+....++...+..+..++.+.|++++|+..+++..+.. +.+...+..+...+...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhH
Confidence 3456666666666665554333333444444556666677777777776666543 2245556666667777777664
Q ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHH
Q 030489 81 --ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDS 145 (176)
Q Consensus 81 --a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~ 145 (176)
|...|++..+..+. +..++..+...+.+.|++++|...+++..... |+.. |++++|++.+++
T Consensus 267 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 267 LQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777777666443 66677777777777777777777777766542 3322 777888887777
Q ss_pred HHHCCCCCcHHH-HHHHHHHhhcccCcccc
Q 030489 146 MLRNGIMPDGLL-LSTLADYNLQSSGSQEH 174 (176)
Q Consensus 146 m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A 174 (176)
+... .|+... +..+..++...|+.++|
T Consensus 344 al~~--~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 344 LARE--KGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHh--CccchHHHHHHHHHHHHCCCHHHH
Confidence 7754 344333 33345566677776655
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.1e-11 Score=85.45 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=110.2
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
+-+..++..+|.++++-...+.|.++|++-.....+.+..+||.+|.+-.-. ...+++.+|+.....||..|||.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 5588999999999999999999999999999888889999999999875432 228899999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcc
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 172 (176)
+.+..+.|+++.|.+.+ ++++.+|++-|+.|+..+|..+|..+++.++.+
T Consensus 280 L~c~akfg~F~~ar~aa-------------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAA-------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHhcchHHHHHHH-------------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 99999999999886655 457788888999999999999998888888764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.38 E-value=1.5e-10 Score=88.67 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=129.2
Q ss_pred CChhHHHHHHHHHhhCC-C-CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 6 CHLDAALKLFGQLTDRG-L-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 57889999999888764 2 3345678888888889999999999999887753 2245677788888889999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCC
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNG 150 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g 150 (176)
.|++..+.... +..+|..+...+...|++++|...|++..... |+.. |++++|+..|++..+.
T Consensus 387 ~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 387 DFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99998877543 77888899999999999999999999887653 3332 8899999999988864
Q ss_pred CCCc-HHHHHHHHHHhhcccCcccc
Q 030489 151 IMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 151 ~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
.|+ ...+..+...+...|++++|
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHH
Confidence 344 56778888888888888766
No 20
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.7e-10 Score=78.82 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=135.8
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh------hhHHHHHHHHHhcC
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS------ITFTILIDAFCKEG 76 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~ 76 (176)
.-+++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..++|+.++..+..+ ||. ....-|..=|.+.|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 34688999999999999863 336677779999999999999999999988874 332 22234556688999
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------------------
Q 030489 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------------------- 133 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------------------- 133 (176)
-++.|+++|..+.+.+ ..-......|+..|-...+|++|+.+-+++.+.+..+...
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999998764 3477888999999999999999999999887766655544
Q ss_pred ---------------------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 ---------------------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ---------------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
|+++.|.+.++.+.+.+..--+.+...|..+|.+.|+.++.
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 89999999999999886666677888999999999987653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.37 E-value=1.6e-10 Score=88.88 Aligned_cols=166 Identities=15% Similarity=0.099 Sum_probs=120.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
...|++++|.+.++++.+.. |.+...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.
T Consensus 87 l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHH
Confidence 45788888888888888764 3367778888888888888888888888887653 235667777888888888888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHHCC
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNG 150 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~~g 150 (176)
..++.+...... +...+..+ ..+...|++++|...++.+......+... |++++|...+++..+..
T Consensus 165 ~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 165 SLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888887766544 33344333 34777888888888888876653222211 88889999998888653
Q ss_pred CCCcHHHHHHHHHHhhcccCccc
Q 030489 151 IMPDGLLLSTLADYNLQSSGSQE 173 (176)
Q Consensus 151 ~~p~~~~~~~l~~~~~~~g~~~~ 173 (176)
..+...+..+...+...|+.++
T Consensus 243 -p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 243 -LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred -CCCHHHHHHHHHHHHHcCCchh
Confidence 2235566778888888888875
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=5.9e-10 Score=84.26 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=85.4
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
+++++|...+++..+.. +-+...+..+...+...|++++|+..|++..+.+ +.+...+..+..++...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566666666666553 2255566666666666666666666666666553 223445555666666666666666666
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCC
Q 030489 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~ 152 (176)
++..+.++. +...+..++..+...|++++|...+++...... |+.. |+.++|.+.+.++... .
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~ 471 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E 471 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence 666665433 222233333344556666666666666544321 1111 6666666666665433 3
Q ss_pred CcHHHH-HHHHHHhhccc
Q 030489 153 PDGLLL-STLADYNLQSS 169 (176)
Q Consensus 153 p~~~~~-~~l~~~~~~~g 169 (176)
|+..+. +.+...+...|
T Consensus 472 ~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred chhHHHHHHHHHHHhccH
Confidence 333332 33334444444
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.30 E-value=5.6e-10 Score=82.55 Aligned_cols=166 Identities=22% Similarity=0.251 Sum_probs=138.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|..+|.++.|.+.|++..+.. +.-...|+.|..++-..|+..+|.+.|+........ .....+.|..+|...|.++.|
T Consensus 296 YyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHH
Confidence 567899999999999998873 325789999999999999999999999998876322 456788899999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~ 148 (176)
..+|....+..+. -...++.|...|-+.|++++|+..+++... +.|+.. |+.+.|++.+.+.+.
T Consensus 374 ~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 374 TRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 9999988876433 567799999999999999999999998765 344443 999999999998886
Q ss_pred CCCCCcH-HHHHHHHHHhhcccCcccc
Q 030489 149 NGIMPDG-LLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 149 ~g~~p~~-~~~~~l~~~~~~~g~~~~A 174 (176)
. .|+. ..++.|...|-.+|++.+|
T Consensus 451 ~--nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 451 I--NPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred c--CcHHHHHHhhHHHHhhccCCcHHH
Confidence 4 6664 4778888999999988776
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=6.1e-11 Score=87.42 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=137.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.-+++.+.|++.|++..+.. +....+|+.+..=+.....+|+|...|+........ +-..|..|.-.|.+.++++.|
T Consensus 431 fSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHH
Confidence 556788899999999988763 227788888888888889999999999887654222 445566677889999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNG 150 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g 150 (176)
+-.|+...+.++. +.....++...+-+.|+.++|++++++....+...... ++.++|+..++++++.
T Consensus 509 e~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~- 586 (638)
T KOG1126|consen 509 EFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL- 586 (638)
T ss_pred HHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-
Confidence 9999999998765 88888899999999999999999999987654433322 9999999999999975
Q ss_pred CCCc-HHHHHHHHHHhhcccCccccC
Q 030489 151 IMPD-GLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 151 ~~p~-~~~~~~l~~~~~~~g~~~~A~ 175 (176)
.|+ ...|..+...|-+.|+.+.|.
T Consensus 587 -vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 587 -VPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred -CcchHHHHHHHHHHHHHHccchHHH
Confidence 566 557788889999999988774
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.28 E-value=6e-10 Score=81.03 Aligned_cols=39 Identities=26% Similarity=0.224 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+++++|.+.|+...+. .|+..++..+...+.+.|+.++|
T Consensus 342 ~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 342 GEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999875 78999988999999999988776
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=2e-09 Score=81.41 Aligned_cols=162 Identities=13% Similarity=-0.011 Sum_probs=116.1
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+...|++++|...|++..+.+ +.+...+..+..++...|++++|+..+++..+.... +...+..++..+...|++++|
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHH
Confidence 356799999999999999875 336778889999999999999999999999886433 233344445567778999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------CChHHHHHHHHHHHH-CCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------GRPTEAMQLYDSMLR-NGI 151 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------~~~~~a~~~~~~m~~-~g~ 151 (176)
...+++..+...+-+...+..+..++...|++++|...++++.......... +.-+.|...++.+.+ ..-
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhH
Confidence 9999998876433355667888889999999999999999875542211111 444678887777763 223
Q ss_pred CCcHHHHHHHHHHh
Q 030489 152 MPDGLLLSTLADYN 165 (176)
Q Consensus 152 ~p~~~~~~~l~~~~ 165 (176)
.|.......++.++
T Consensus 506 ~~~~~~~~~~~~~~ 519 (553)
T PRK12370 506 IDNNPGLLPLVLVA 519 (553)
T ss_pred hhcCchHHHHHHHH
Confidence 34333344444433
No 27
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=3e-09 Score=69.68 Aligned_cols=170 Identities=14% Similarity=0.044 Sum_probs=141.5
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+|.+.|++..|.+-+++..+.. +.+..+|..+...|.+.|..+.|.+.|++..+.... +..+.|..--.+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHH
Confidence 3678999999999999999985 447899999999999999999999999998876433 66778888888899999999
Q ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 81 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~ 148 (176)
|.+.|++....- ..--..+|..+.-+..+.|+++.|...|++..+.....+.. |++-.|..+++....
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 999999988642 22245688889889999999999999999988765443333 999999999999987
Q ss_pred CCCCCcHHHHHHHHHHhhcccCccc
Q 030489 149 NGIMPDGLLLSTLADYNLQSSGSQE 173 (176)
Q Consensus 149 ~g~~p~~~~~~~l~~~~~~~g~~~~ 173 (176)
.+. ++..+....|..-...|+.+.
T Consensus 202 ~~~-~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 202 RGG-AQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred ccc-ccHHHHHHHHHHHHHhccHHH
Confidence 765 888888888888777777553
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=4.5e-09 Score=70.35 Aligned_cols=143 Identities=17% Similarity=0.134 Sum_probs=115.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+...|++++|.+.+++..+.. +.+...+..+...+...|++++|++.+++...... ......+..+..++...|++++
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 456899999999999998875 34677888999999999999999999999886532 2244567778888999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSML 147 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~ 147 (176)
|...+++..+.... +...+..+...+...|++++|...+++.... .|+.. |+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999887543 6778889999999999999999999998775 23222 67777777666655
Q ss_pred H
Q 030489 148 R 148 (176)
Q Consensus 148 ~ 148 (176)
.
T Consensus 231 ~ 231 (234)
T TIGR02521 231 K 231 (234)
T ss_pred h
Confidence 3
No 29
>PF12854 PPR_1: PPR repeat
Probab=99.22 E-value=2e-11 Score=56.64 Aligned_cols=29 Identities=41% Similarity=0.960 Sum_probs=11.3
Q ss_pred CcChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 59 KPNSITFTILIDAFCKEGRMDDATMMFSK 87 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 87 (176)
.||..||++||++|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.21 E-value=4.3e-09 Score=83.72 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=124.3
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.. +.+...+..+.......|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 4678999999999887655 4455556677788888999999999998888764 223333333444455669999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHC
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~ 149 (176)
..+++..+.. |+...|..+..++.+.|++++|...+++..... |+.. |+.++|+..+++..+.
T Consensus 597 ~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 597 NDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999988765 467788888999999999999999999887653 4433 8999999999998865
Q ss_pred CCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 150 GIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 150 g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
.|+ ...+..+..++...|+.++|
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 444 55677888888888888766
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.20 E-value=3e-09 Score=77.73 Aligned_cols=171 Identities=13% Similarity=0.054 Sum_probs=93.3
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHH---HhcCCHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF---CKEGRMD 79 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~ 79 (176)
.+.|+++.|.+.++.+.+.. |-+..++..+...+...|++++|.+.+..+.+.++.+.......-..++ ...+..+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688888888888888775 3366777788888888888888888888777665432211111001111 1111111
Q ss_pred HHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC----C-------------------
Q 030489 80 DATMMFSKMLEKGPK---ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----A------------------- 133 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~------------------- 133 (176)
++.+.+..+.+..+. .+...+..+...+...|++++|.+++++..+....... .
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 122222222222110 14445555555555555555555555555443222221 0
Q ss_pred --------------------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 --------------------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 --------------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
|++++|.+.|+........|+...+..+...+.+.|+.++|
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777543333467777777777777777776554
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.20 E-value=2.1e-11 Score=84.67 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=31.8
Q ss_pred chhhCChhHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+.+.|++++|+++++...... .+.+...|..+.......++++.|++.|+++...+.. ++..+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccc
Confidence 446677777777775544333 2334555555666666677777777777777665433 44445555554 45666666
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSML 147 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~ 147 (176)
|.++++...+.. ++...+..++..+.+.++++++.++++.+....-.+... |+.++|++++++..
T Consensus 96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665544332 344555555666666666666666666654322212111 66666666666665
Q ss_pred HCCCCCc-HHHHHHHHHHhhcccCcc
Q 030489 148 RNGIMPD-GLLLSTLADYNLQSSGSQ 172 (176)
Q Consensus 148 ~~g~~p~-~~~~~~l~~~~~~~g~~~ 172 (176)
+. .|+ ......++..+...|+.+
T Consensus 174 ~~--~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 174 EL--DPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp HH---TT-HHHHHHHHHHHCTTCHHH
T ss_pred Hc--CCCCHHHHHHHHHHHHHCCChH
Confidence 43 343 334455555555555543
No 33
>PF12854 PPR_1: PPR repeat
Probab=99.19 E-value=4.3e-11 Score=55.53 Aligned_cols=34 Identities=56% Similarity=1.117 Sum_probs=32.2
Q ss_pred CCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 030489 21 RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT 54 (176)
Q Consensus 21 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 54 (176)
+|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.17 E-value=9.7e-09 Score=83.82 Aligned_cols=167 Identities=15% Similarity=0.164 Sum_probs=108.1
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-------------------------
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL------------------------- 58 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------------------- 58 (176)
..|++++|++.|++..+..+ -+...+..+...|.+.|++++|+..+++..+...
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45777777777777766542 2556666677777777777777777766654321
Q ss_pred ------------------------------------------------CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 59 ------------------------------------------------KPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 59 ------------------------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
+.+...+..+...+.+.|++++|+..|++..+
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222333445556677788888888887777
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCC--CC--
Q 030489 91 KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGI--MP-- 153 (176)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~--~p-- 153 (176)
..+. +...+..+...|...|++++|++.++..... .|+.. |+.++|.++++++....- .|
T Consensus 632 ~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 708 (1157)
T PRK11447 632 REPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM 708 (1157)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch
Confidence 6544 6778888888888888888888888876543 22222 888888888888875421 11
Q ss_pred -cHHHHHHHHHHhhcccCcccc
Q 030489 154 -DGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 154 -~~~~~~~l~~~~~~~g~~~~A 174 (176)
+...+..+...+...|+.++|
T Consensus 709 ~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 709 ESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred hhHHHHHHHHHHHHHcCCHHHH
Confidence 123455556667777776665
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.5e-09 Score=74.10 Aligned_cols=170 Identities=16% Similarity=0.129 Sum_probs=139.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
+-.++.++|...|++..+.++. ....|+.+.+-|....+...|++-|+.....+. -|-..|..|-.+|.-.+.+.-|.
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHH
Confidence 4467889999999999988633 788999999999999999999999999988753 48899999999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHH---
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLR--- 148 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~--- 148 (176)
-.|++.....+ .|...|..|.++|.+.++.++|++.|......|-..... ++.++|-+.|.+-++
T Consensus 419 yYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 419 YYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred HHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999998854 499999999999999999999999999988765553333 888888888876653
Q ss_pred -CCC-CCc-HHHHHHHHHHhhcccCccccC
Q 030489 149 -NGI-MPD-GLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 149 -~g~-~p~-~~~~~~l~~~~~~~g~~~~A~ 175 (176)
.|. .|. .....-|...+.+.+++++|.
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 343 231 223334567778888888774
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.15 E-value=1.1e-08 Score=83.56 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=87.1
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-ChhhHH------------HH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFT------------IL 68 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~------------~l 68 (176)
+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....+. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 345788888999888888764 3377888888888888899999998888877653221 111111 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
...+.+.|++++|...|++..+.... +...+..+...+...|++++|++.|++..+.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33566778888888888888776543 6667777778888888888888888776643
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=2.1e-08 Score=66.00 Aligned_cols=122 Identities=14% Similarity=0.184 Sum_probs=101.5
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHH-HhcCC--HHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF-CKEGR--MDDA 81 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a 81 (176)
.++.+++...++...+.+ +.+...|..+...|...|++++|+..|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456677777887777665 558999999999999999999999999998887533 677777777764 67777 5999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 129 (176)
.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+...+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999998766 8889999999999999999999999999875433
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.12 E-value=1.4e-08 Score=79.70 Aligned_cols=167 Identities=15% Similarity=0.097 Sum_probs=110.0
Q ss_pred hhhCChhHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc---ChhhHHHHHHHHHhcCCH
Q 030489 3 IKECHLDAALKLFGQLTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP---NSITFTILIDAFCKEGRM 78 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~ 78 (176)
...|++++|+..|+.+.+.+.+ |+ ..-..+..+|...|++++|+.+|+++.+..... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4567888888888888776532 22 222224667888888888888888876542111 123455566677888888
Q ss_pred HHHHHHHHHHHhcCC-----------CCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------
Q 030489 79 DDATMMFSKMLEKGP-----------KAN---VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------- 133 (176)
++|.++++.+....+ .|+ ...+..+...+...|++++|+++++++... .|+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 888888888876532 112 234556677778888888888888887654 33333
Q ss_pred --CChHHHHHHHHHHHHCCCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 134 --GRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 --~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
|++++|++.+++.... .|+ ...+......+.+.|++++|
T Consensus 405 ~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 405 ARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred hcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHH
Confidence 8888888888887764 455 34445555666777776654
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=6.1e-08 Score=67.90 Aligned_cols=167 Identities=14% Similarity=0.022 Sum_probs=100.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.|++++|...|++..+.. +.+...|+.+...+...|++++|+..|+...+.... +..++..+..++...|++++|
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345677778888887777764 336777777778888888888888888777765322 455666677777777888888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------CChHHHHHHHHHHHHC---
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------GRPTEAMQLYDSMLRN--- 149 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------~~~~~a~~~~~~m~~~--- 149 (176)
.+.|+...+..+. +. ........+...+++++|...+++..... .++.. |+.+.+ +.+..+.+.
T Consensus 152 ~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~ 227 (296)
T PRK11189 152 QDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGWNIVEFYLGKISEE-TLMERLKAGATD 227 (296)
T ss_pred HHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHHHHHHHHccCCCHH-HHHHHHHhcCCC
Confidence 8888777765433 22 11222223345567788877776544322 12111 444433 244444321
Q ss_pred CC--CC-cHHHHHHHHHHhhcccCcccc
Q 030489 150 GI--MP-DGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 150 g~--~p-~~~~~~~l~~~~~~~g~~~~A 174 (176)
.. .| ....|..+...+.+.|+.++|
T Consensus 228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 228 NTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 01 11 124677777788888887766
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.10 E-value=2e-08 Score=80.04 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=91.8
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.|++++|...+++..+.. +.+...+..+.......|++++|+..+++..+. .|+...+..+..++.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45677777777777776654 223333333444444557777777777776654 345666777777777777777777
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHC
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~ 149 (176)
..|++.....+. +...++.+..++...|++++|+..+++..+. .|+.. |++++|...+++..+.
T Consensus 630 ~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 630 SDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777776544 6666777777777777777777777776653 23332 7777777777777643
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=4.7e-08 Score=67.23 Aligned_cols=165 Identities=19% Similarity=0.219 Sum_probs=121.8
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh-------------------
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS------------------- 62 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------------------- 62 (176)
|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-.++.+.+-.+..
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 456788899999998888765 346677888888899999999999888877765433211
Q ss_pred -------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 63 -------------------ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 63 -------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
..--.+-+.....|++++|.+.++...+.+...-..+...|..+|...|+.++...++..+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1111233556678888888888888888887777788888999999999999999999888
Q ss_pred HHCCCCCCCC----------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhccc
Q 030489 124 CENNISPNIA----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169 (176)
Q Consensus 124 ~~~~~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 169 (176)
.+....+... ...+.|..++.+-... .|+...+..++..-...+
T Consensus 276 ~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 276 METNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence 7765444443 5556666666665554 799999998887765443
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=6.2e-09 Score=71.72 Aligned_cols=168 Identities=12% Similarity=0.074 Sum_probs=79.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh-------
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK------- 74 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~------- 74 (176)
|.+.|-+.+|.+.|+...+. .|-+.||-.|-++|.+...+..|+.++.+-... ++-|+.....+...+-.
T Consensus 233 ylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHH
Confidence 44555556666666555554 445555555666666666666555555543332 11122222222233333
Q ss_pred ---------------------------cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 030489 75 ---------------------------EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 75 ---------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 127 (176)
.++++-|..+++.+.+.|+. +...|+.+--+|.-.++++-++..|++....-
T Consensus 310 ~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 310 LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 33334444444444444433 44444444444444444444444444443322
Q ss_pred CCCCCC--------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 128 ISPNIA--------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 128 ~~~~~~--------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
-.|+.. |++..|.++|+-....+ .-....++.|.-.-.+.|+++.|
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHH
Confidence 222221 66666666666665432 22345566666666666666554
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.07 E-value=5.9e-08 Score=76.21 Aligned_cols=159 Identities=11% Similarity=-0.012 Sum_probs=125.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-----------CcC---hhh
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEP---DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-----------KPN---SIT 64 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----------~~~---~~~ 64 (176)
|...|++++|+..|+++.+..... .......+..++.+.|++++|+++++.+..... .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 567899999999999987653221 135566777788999999999999999886531 123 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------- 133 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------- 133 (176)
+..+...+...|+.++|+++++++....+. +...+..+...+...|++++|++.+++..... |+..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHH
Confidence 556778889999999999999999987544 78899999999999999999999999987753 5553
Q ss_pred --CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHh
Q 030489 134 --GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165 (176)
Q Consensus 134 --~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 165 (176)
+++++|..+++++.+. .|+......+-...
T Consensus 439 ~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999999975 67766555554444
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.06 E-value=1.2e-08 Score=78.07 Aligned_cols=159 Identities=16% Similarity=0.254 Sum_probs=123.1
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC------------------------CCcChhhHHHH
Q 030489 13 KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ------------------------LKPNSITFTIL 68 (176)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------------------------~~~~~~~~~~l 68 (176)
.+|..+...|+.|+..||.+++.-|+..|+.+.|- +|..|+-.. -.|...||+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 46677888899999999999999999999998887 776665321 13677889999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHHh----cC-------------------------------------------------
Q 030489 69 IDAFCKEGRMDD---ATMMFSKMLE----KG------------------------------------------------- 92 (176)
Q Consensus 69 l~~~~~~~~~~~---a~~~~~~~~~----~~------------------------------------------------- 92 (176)
..+|...|++.. +.+.++.+.. .|
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999887543 3222222111 00
Q ss_pred ------------------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------
Q 030489 93 ------------------------------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133 (176)
Q Consensus 93 ------------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------- 133 (176)
-.|++.+|..++++-...|+.+.|..++.+|.+.|.+....
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~ 249 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGI 249 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcC
Confidence 04788899999999999999999999999999999887776
Q ss_pred CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcc
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQ 172 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 172 (176)
+...-+..+++-|.+.|+.|++.|+...+-.+...|...
T Consensus 250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 777778888899999999999999998888877755543
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=4.2e-08 Score=67.74 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=119.4
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
|...=+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||-.|-+.|.+.++++.|..++.+-.+. ++.++....-+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3344468999999999999999999987776 567889999999999999999999999998876 4446666667788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 106 GYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.+-..++.+++.++++...+........ ++++.|+.+++++.+.|+. ++..|..+--+|...+.++.+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 8999999999999999987642211111 9999999999999999975 788898888888888777654
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.04 E-value=6.5e-08 Score=70.80 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=119.7
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh--hHHHHHHHHHhcCCHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI--TFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 81 (176)
..|+++.|.+.+....+.... +...+-....+..+.|+.+.+.+.+.+..+.. |+.. .--.....+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 579999999999887776322 23444455677888999999999999987653 4443 334457888899999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CCh-----HHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------GRP-----TEAMQLYDSM 146 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~-----~~a~~~~~~m 146 (176)
...++.+.+..+. +..++..+...|.+.|+|+++.+.+..+.+.+..+... +.. +...+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999988755 77889999999999999999999999998876543322 112 1112234334
Q ss_pred HHCCC---CCcHHHHHHHHHHhhcccCcccc
Q 030489 147 LRNGI---MPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 147 ~~~g~---~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.+... +.+...+..+...+...|+.++|
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 33211 12667777787888888877665
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.03 E-value=5.7e-08 Score=70.80 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=92.4
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHH--HHHHHHHhcCCHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT--ILIDAFCKEGRMDDAT 82 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~ 82 (176)
.|++++|++......+.... ....|-....+..+.|+++.+.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58999999888776654212 1222333345557999999999999998875 45554333 3356788999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 129 (176)
+.++.+.+..+. +......+...|.+.|+|+++.+++..+.+.+..
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 999999988755 7888999999999999999999999998876554
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.02 E-value=9.2e-08 Score=74.99 Aligned_cols=166 Identities=15% Similarity=0.108 Sum_probs=125.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
..+.|+++.|++.|++..+..+.-....+ .++..+...|+.++|+.++++.... -+.+......+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 35889999999999999887433112344 8888888999999999999998721 111222223335578888999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CChHHHHHHHHHHHHCCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------GRPTEAMQLYDSMLRNGI 151 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~~a~~~~~~m~~~g~ 151 (176)
.++|+++.+..+. +...+..++..|...++.++|++.++++.......... ++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~-- 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL-- 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--
Confidence 9999999998765 67888888999999999999999999987654331111 5565699999999976
Q ss_pred CCc-HHHHHHHHHHhhcccCcc
Q 030489 152 MPD-GLLLSTLADYNLQSSGSQ 172 (176)
Q Consensus 152 ~p~-~~~~~~l~~~~~~~g~~~ 172 (176)
.|+ ...+..+..++.+.|-..
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcH
Confidence 454 556677778877777554
No 49
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.00 E-value=1e-08 Score=76.10 Aligned_cols=117 Identities=16% Similarity=0.222 Sum_probs=58.4
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-ChhhHHHHHHHHHhcCCHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+|+...|+.-|++..+.. +--...|-.|...|...+.+++|+..|.+.... .| ....+..|...|...|.++-|+
T Consensus 230 ~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred hcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHH
Confidence 3455666666666655542 113455556666666666666666666554443 22 2333444444455555555555
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
..|++..+..+. -...|+.|..++-..|++.+|...+.+..
T Consensus 307 ~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 307 DTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 555554444322 33445555555555555555555554443
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.99 E-value=2.6e-07 Score=65.11 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=72.7
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.|+|.+|+++..+-.+.+.. ....|..-..+--+.|+.+.+-.++.+..+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776666533 44555566666667777777777777666542233444444444555555555555555
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 131 (176)
..++.+.+.. ++........+|.+.|+|.....+...|.+.+.-.+
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 5555555433 455555555555555555555555555555544333
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.97 E-value=1.5e-07 Score=58.92 Aligned_cols=110 Identities=12% Similarity=-0.026 Sum_probs=92.1
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 11 ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 11 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
-..+|++..+. .|+ .+..+...+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+....
T Consensus 12 ~~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34566666655 333 35667888899999999999999988775 33788888999999999999999999999998
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 91 KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.++. +..++..+..++...|++++|...|+.....
T Consensus 87 l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 87 LDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8654 8899999999999999999999999988764
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.96 E-value=1.4e-07 Score=73.97 Aligned_cols=169 Identities=12% Similarity=0.132 Sum_probs=122.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-----CCcChhhHHHHHHHHHhcC
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-----LKPNSITFTILIDAFCKEG 76 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~ 76 (176)
+.+.|++.++++.|+.+...+.+....+-..+.++|...+.+++|+.+|+.+.... ..++......|.-++...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 45678888999999999888876677788888999999999999999998886643 1223444567888888899
Q ss_pred CHHHHHHHHHHHHhcCC-------------CCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------
Q 030489 77 RMDDATMMFSKMLEKGP-------------KANV-VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------- 133 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------- 133 (176)
++++|..+++.+.+..+ .||- ..+..++..+...|++.+|.+.++.+... .|...
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v 459 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASI 459 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999988886322 1121 22344567778889999999999988654 33333
Q ss_pred ----CChHHHHHHHHHHHHCCCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 134 ----GRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ----~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
|.+.+|.+.++..... .|+ ..+......++...|++++|
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHH
Confidence 8888888888666543 444 44556777777777777765
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=6.4e-07 Score=62.83 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=114.5
Q ss_pred hCChhHHHHHHHHHhhCC-CCc--cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 5 ECHLDAALKLFGQLTDRG-LEP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
.++.+.++.-+.++.... ..| ....|..+...+...|++++|...|++..+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 356677888888888643 222 246688888899999999999999999888753 3678899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC----------CCChHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----------AGRPTEAMQLYDSMLR 148 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----------~~~~~~a~~~~~~m~~ 148 (176)
...|+...+..+. +..+|..+..++...|++++|.+.|+.....+..... .++.++|...|.+...
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999987655 6788888999999999999999999998775433221 1789999999977653
No 54
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=2.8e-07 Score=56.94 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=91.3
Q ss_pred HHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 030489 14 LFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 93 (176)
.++...... +.+......+...+...|++++|...++.....+ +.+...+..+..++.+.|++++|...+++..+.+.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555553 2255667788888999999999999999988765 34778888899999999999999999999888764
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 030489 94 KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 94 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 127 (176)
.+..++..+...|...|++++|...|+...+..
T Consensus 83 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 -DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478888889999999999999999999887643
No 55
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=1.3e-07 Score=59.24 Aligned_cols=103 Identities=9% Similarity=-0.036 Sum_probs=86.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|+...... +.+...|..+..++...|++++|+..|+...... +.+...+..+..++...|++++|
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 457899999999999998875 4488999999999999999999999999999865 34788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
...|+...+..+. +...|...-.+.
T Consensus 112 i~~~~~Al~~~p~-~~~~~~~~~~~~ 136 (144)
T PRK15359 112 REAFQTAIKMSYA-DASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 9999999987543 555665444443
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=9.9e-07 Score=59.73 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=89.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCC-c-cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh--hhHHHHHHHHHhc--
Q 030489 2 LIKECHLDAALKLFGQLTDRGLE-P-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS--ITFTILIDAFCKE-- 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~-- 75 (176)
+.+.|++++|...|+++....+. | ...++..+..++.+.|++++|+..++++.+....... .++..+..++...
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID 122 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence 45678888888888888765321 1 1246677888888888888888888888765322111 1344444555543
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCcHHHHH-----------------HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC
Q 030489 76 ------GRMDDATMMFSKMLEKGPKANVVTYS-----------------CLIDGYFKSQNMKSAFDVYEEMCENNIS-PN 131 (176)
Q Consensus 76 ------~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~ 131 (176)
|+.++|.+.|+.+.+..+. +...+. .+...|.+.|++.+|...++...+.... |.
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 6788888888888876443 322221 2334556667777777777766543221 11
Q ss_pred CC-------------CChHHHHHHHHHHHH
Q 030489 132 IA-------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 132 ~~-------------~~~~~a~~~~~~m~~ 148 (176)
.. |+.++|..+++.+..
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 666666666655553
No 57
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.85 E-value=7.2e-09 Score=48.36 Aligned_cols=33 Identities=39% Similarity=0.798 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN 61 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 61 (176)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777765
No 58
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=2e-06 Score=62.27 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=122.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC-hhhHHHHHHHHHhcCCHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-SITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 81 (176)
.+.|+++.|+..+..+...- |-|+..+......+.+.|+.++|.+.++.+... .|+ ....-.+..++.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 46789999999999988773 447777788899999999999999999999876 455 55566677999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHCC--CCCcHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNG--IMPDGLLLS 159 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~ 159 (176)
+.++......... |...|..|..+|...|+..++..-..+.... .|.++.|+..+....+.. -.|+-.=+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~------~G~~~~A~~~l~~A~~~~~~~~~~~aR~d 466 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYAL------AGRLEQAIIFLMRASQQVKLGFPDWARAD 466 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 9999999988655 9999999999999999999999888876542 278899999888887542 233333344
Q ss_pred HHHHH
Q 030489 160 TLADY 164 (176)
Q Consensus 160 ~l~~~ 164 (176)
..|..
T Consensus 467 ari~~ 471 (484)
T COG4783 467 ARIDQ 471 (484)
T ss_pred HHHHH
Confidence 44443
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.5e-07 Score=66.97 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=115.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|...++.++....|.....-+ +-|+.+|..-...+.-.+++++|+.=|+....... -+...|--+.-+..+.+.++++
T Consensus 370 y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666665554 22556666666666666666666666666555421 1344455555566778889999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------CCCC---------CChHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS---------PNIA---------GRPTEAMQLY 143 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---------~~~~---------~~~~~a~~~~ 143 (176)
+..|++.++. ++-.+..|+.....+...+++++|.+.|+........ |-.. +++.+|.+++
T Consensus 448 m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 448 MKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred HHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHH
Confidence 9999998877 6668889999999999999999999999987653222 1111 8888888888
Q ss_pred HHHHHCCCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 144 DSMLRNGIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 144 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
++..+. .|. ...|..|...-.+.|++++|
T Consensus 527 ~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 527 RKAIEL--DPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHcc--CchHHHHHHHHHHHHHHHhhHHHH
Confidence 888864 343 44777888888888877766
No 60
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.81 E-value=9.1e-07 Score=68.13 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=129.4
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
|++++|.+++.+..+.. +.+...|.+|...|-+.|+.+++...+-.....+ +.|...|..+-....+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999999885 5588999999999999999999998886655443 447789999999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------------CChHHHHHHHHHHHH-
Q 030489 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------------GRPTEAMQLYDSMLR- 148 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------------~~~~~a~~~~~~m~~- 148 (176)
.+.++..++ +...+-.-+..|-+.|+...|...|.++.....+.+.. ++-+.|++.++....
T Consensus 231 ~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999998654 66666667789999999999999999998764422211 555888888777764
Q ss_pred CCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 149 NGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 149 ~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.+-..+...++.+...+.+...++.|
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~ 335 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKA 335 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHh
Confidence 22344555666666666655544433
No 61
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.80 E-value=3.7e-07 Score=65.84 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=97.4
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
..++++.|.++|+++.+.. |+ ....+...+...++..+|++++++..+.. +-+..........+.+.++++.|.+
T Consensus 181 ~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 4578999999999999874 44 44458888888899999999999988653 3366677777788999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+.++..+..+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 256 iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 256 IAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999998644 77899999999999999999999998764
No 62
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.79 E-value=1.5e-08 Score=46.96 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP 60 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 60 (176)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=3e-06 Score=55.91 Aligned_cols=154 Identities=19% Similarity=0.104 Sum_probs=125.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
|-+.|+.+.|.+-|+...+.. +-+..+.|.....+|..|++++|.+.|++.... .+..-..||..+.-+..+.|+.+.
T Consensus 79 Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 79 YQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred HHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchh
Confidence 557899999999999999875 337899999999999999999999999998875 223345688888889999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~ 148 (176)
|.+.|++-.+.... ...+.-.+.....+.|++..|...++.....+. ++.. |+.+.+.++-.++.+
T Consensus 158 A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 158 AEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999988655 666788889999999999999999999877665 4433 887777777777765
Q ss_pred CCCCCcHHHHHH
Q 030489 149 NGIMPDGLLLST 160 (176)
Q Consensus 149 ~g~~p~~~~~~~ 160 (176)
. .|.+.-|-.
T Consensus 236 ~--fP~s~e~q~ 245 (250)
T COG3063 236 L--FPYSEEYQT 245 (250)
T ss_pred h--CCCcHHHHh
Confidence 4 565554443
No 64
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.77 E-value=2.2e-08 Score=46.62 Aligned_cols=33 Identities=39% Similarity=0.765 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 131 (176)
+||.+|.+|++.|++++|.++|++|.+.|+.|+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555554443
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.77 E-value=6.5e-07 Score=66.40 Aligned_cols=173 Identities=18% Similarity=0.210 Sum_probs=122.0
Q ss_pred chhhCChhHHHHHHHHHhhC-----C--CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CC-CcCh-hhHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR-----G--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-----QL-KPNS-ITFTI 67 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~ 67 (176)
|...+++++|..+|+.+... | .+.-..+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.
T Consensus 251 y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 56778999999999888643 2 2334577888899999999999998888765431 11 2222 33566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCCC---
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEK-----GPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN----ISPNIA--- 133 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~--- 133 (176)
+...+...+++++|..+++...+. |.. .-..+++.|...|...|++++|.+++++..... -.....
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 777889999999999998865431 111 134679999999999999999999999875422 111111
Q ss_pred ------------CChHHHHHHHHHHH----HCCC-CCc-HHHHHHHHHHhhcccCcccc
Q 030489 134 ------------GRPTEAMQLYDSML----RNGI-MPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ------------~~~~~a~~~~~~m~----~~g~-~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
+...+|.++|.+-. ..|. .|+ ..+|..|...|.+.|+.+.|
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 66666777665543 3442 233 45889999999999998876
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=9.4e-07 Score=68.30 Aligned_cols=119 Identities=11% Similarity=0.109 Sum_probs=73.3
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+.|++++|+.+|+...+.. |-+...+..+...+.+.+++++|+..+++....... +....+.+..++.+.|++++|..
T Consensus 98 ~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHH
Confidence 4566667777776666653 224555666666666677777777666666655322 34444455566666677777777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+|+++...+.. +..++..+..++...|+.++|...|+...+
T Consensus 176 ~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 176 CFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766664332 466666666666666777777666666543
No 67
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.74 E-value=2.6e-08 Score=46.18 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 130 (176)
+|+.+|.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.74 E-value=4.7e-07 Score=70.21 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=119.7
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.++.++|+.+|.+..... |.|...=|-+.-.++..|++.+|..+|.+..+.... ...+|-.+..+|..+|++..|+++
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHH
Confidence 467899999999998875 448899999999999999999999999999887542 567888999999999999999999
Q ss_pred HHHHH-hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------------------------
Q 030489 85 FSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------------------------ 133 (176)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------------------------ 133 (176)
|+... .....-++.+.+.|..++.+.|.+.+|.+.........+.....
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~ 782 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAV 782 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 99765 44445577889999999999999999999888765543322222
Q ss_pred CChHHHHHHHHHHHHCCCC
Q 030489 134 GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~ 152 (176)
+..+.|.++|.+|...+-.
T Consensus 783 ~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 783 KELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 7889999999999865533
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=1.5e-06 Score=58.20 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=106.4
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
..|+-+.+..+........ +.+....+.......+.|++.+|+..+++..... ++|..+|+.+--+|.+.|+.+.|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHH
Confidence 3566666666666554332 4466677778888899999999999998887654 5688889988899999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSML 147 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~ 147 (176)
-|.+..+..+. +....|.+.-.|.-.|+++.|..++......+...... |++.+|..+...-.
T Consensus 156 ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 156 AYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99888887544 77788888888888999999999988876654433333 88888777765544
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=7.4e-06 Score=58.84 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=96.2
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHH---HHHHHHhCCChhHHHHHHHHHHhCCCCcC-hhhHHHHHHHHHhcCCH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNT---IICGYCSLNRLDEAVQLFEKLTCVQLKPN-SITFTILIDAFCKEGRM 78 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 78 (176)
...|++++|.+++++..+.. |.+...+.. ........+....+.+.+.. .....|+ ......+...+...|++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 45688999999999888763 334445442 22222234455555555544 1112233 23344555678889999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCCC--------------CChHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS-PNIA--------------GRPTEAMQLY 143 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~--------------~~~~~a~~~~ 143 (176)
++|.+.+++..+..+. +...+..+...|...|++++|..++++....... +... |+.++|+.++
T Consensus 131 ~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 131 DRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999987644 6777888888999999999999999987664322 2211 9999999999
Q ss_pred HHHHH
Q 030489 144 DSMLR 148 (176)
Q Consensus 144 ~~m~~ 148 (176)
++...
T Consensus 210 ~~~~~ 214 (355)
T cd05804 210 DTHIA 214 (355)
T ss_pred HHHhc
Confidence 99863
No 71
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=2e-06 Score=57.62 Aligned_cols=145 Identities=12% Similarity=0.054 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+... ..+-..+...|+-+....+........ +-|....+.......+.|++..|...|.+..... ++|..+|+.+--
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 666677777777777777776644332 3355666677788888888888888888887764 458888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 106 GYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+|.+.|+++.|..-|.+..+.....+.. |+.+.|..++......+- -+...-..+..+....|++.+|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHH
Confidence 8888888888888888776643332222 888888888888876532 2555666777777777777665
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=5.7e-07 Score=62.65 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=63.5
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh----cCCH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EGRM 78 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~ 78 (176)
...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+. ..| .+..-+..++.. .+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 3456666666665431 24555556666666777777777777776654 222 333333333322 2356
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
..|.-+|+++.+. +.+++.+.+.+..+....|++++|.+++.+...
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6777777776554 345666666677777777777777777666543
No 73
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.71 E-value=3.3e-06 Score=55.38 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=95.1
Q ss_pred CccHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC----------------CHHHHH
Q 030489 24 EPDIITYNTIICGYCSL-----NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG----------------RMDDAT 82 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 82 (176)
..+..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.|++.+=+.. +.+.|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 55899999999999754 678888889999999999999999999999876522 457799
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH-CCCCCCCC------CChHHHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK-SAFDVYEEMCE-NNISPNIA------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~m~~-~~~~~~~~------~~~~~a~~~~~~m~~ 148 (176)
+++++|.+.|+-||..++..+++.+++.+..- +..++.--|.+ .+..|... +..+.|.-.+++|..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~plp~~lP~Dp~eLA~lal~rm~~ 197 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPWPLPRPLPQDPLELAKLALRRMSP 197 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCCCCCcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999887632 33333333322 23333333 556666666777754
No 74
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.70 E-value=2.9e-07 Score=66.78 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=67.4
Q ss_pred CChhHHHHHHHHHhhC--CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 6 CHLDAALKLFGQLTDR--GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
.+++.+..++.+.+.. ....-..|.+++++.|.+.|..++++.+++.=...|+-||..++|.||+.+.+.|++..|.+
T Consensus 80 ~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 80 DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHH
Confidence 3455566666666544 22223444557777777777777777777776777777777777777777777777777777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
+..+|...+.-.+..|+...+.+|.+.
T Consensus 160 V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 160 VATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777666555555556665555555544
No 75
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.5e-06 Score=62.77 Aligned_cols=59 Identities=19% Similarity=0.416 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.++.+-|.-.++.++|...|+...+.++. ....|+.+-.-|....+...|.+-++...+
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 33444455555666666666666665543 555566666666666666666666655543
No 76
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.69 E-value=7.8e-07 Score=64.61 Aligned_cols=111 Identities=21% Similarity=0.193 Sum_probs=96.1
Q ss_pred CCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH
Q 030489 21 RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98 (176)
Q Consensus 21 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (176)
.+.+.+......+++.+....+.+.+..++.+.... ....-..|.+++++.|.+.|..+.+..++..-.+.|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667888889999999999999999999988865 333445677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 131 (176)
++|.||+.+.+.|++..|.++...|...+...+
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~ 172 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDN 172 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999876554333
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=4.8e-06 Score=56.40 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH--HHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-P-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV--VTYS 101 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 101 (176)
....+..+...+.+.|++++|...|++....... | ...++..+..++.+.|++++|...++++.+..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 5677888888999999999999999998775321 1 1246677889999999999999999999976543222 2455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCCC----------------------------CChHHHHHHHHH
Q 030489 102 CLIDGYFKS--------QNMKSAFDVYEEMCENNISPNIA----------------------------GRPTEAMQLYDS 145 (176)
Q Consensus 102 ~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~----------------------------~~~~~a~~~~~~ 145 (176)
.+..++... |++++|.+.++.+.......... |++++|...+++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 555556554 78999999999987653332211 889999999999
Q ss_pred HHHCCC-CC-cHHHHHHHHHHhhcccCcccc
Q 030489 146 MLRNGI-MP-DGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 146 m~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A 174 (176)
..+..- .| ....+..+..++.+.|+.++|
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 986521 12 346788999999999998876
No 78
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.66 E-value=1.3e-06 Score=51.17 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CcChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCcHHH
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTILIDAFCKEG--------RMDDATMMFSKMLEKGPKANVVT 99 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 99 (176)
+-..-|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334566667777999999999999999999 999999999998876643 34567888999999999999999
Q ss_pred HHHHHHHHHhc
Q 030489 100 YSCLIDGYFKS 110 (176)
Q Consensus 100 ~~~l~~~~~~~ 110 (176)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=8.8e-06 Score=63.11 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=109.2
Q ss_pred CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 030489 23 LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101 (176)
Q Consensus 23 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (176)
.+.+...+..|.....+.|++++|+.+++...+. .| +......+..++.+.+++++|....++.....+. +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 4557899999999999999999999999999886 44 4566777889999999999999999999998765 788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCCCcHHHHHH
Q 030489 102 CLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160 (176)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ 160 (176)
.+..++.+.|++++|..+|++....+ |+.. |+.++|...|++..+. ..|-...|+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 89999999999999999999998733 3322 9999999999999843 2333344443
No 80
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.65 E-value=2.1e-06 Score=48.81 Aligned_cols=96 Identities=27% Similarity=0.363 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (176)
++..+...+...|++++|+.++++..+.. +.+...+..+..++...+++++|.+.++...+.... +..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 35567777888899999999998887653 224466777788888889999999999888876543 5567888888888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 030489 109 KSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 109 ~~g~~~~a~~~~~~m~~~ 126 (176)
..|+++.|...+......
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 899999998888877543
No 81
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.64 E-value=6.4e-06 Score=51.62 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=83.5
Q ss_pred hhCChhHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh--hhHHHHHHHHHhcCCHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS--ITFTILIDAFCKEGRMD 79 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~ 79 (176)
..++...+...++.+.+..... .....-.+...+...|++++|...|+........|+. ...-.|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3577888888888888764332 1233344567788899999999999998887533332 23344667788899999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
+|...++..... ......+....+.|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999998774433 23455677778899999999999998875
No 82
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.63 E-value=7.3e-07 Score=52.22 Aligned_cols=72 Identities=19% Similarity=0.435 Sum_probs=63.7
Q ss_pred hhhCChhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLN--------RLDEAVQLFEKLTCVQLKPNSITFTILIDAFC 73 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 73 (176)
...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 456899999999999999999 999999999999988654 24578999999999999999999999998876
Q ss_pred h
Q 030489 74 K 74 (176)
Q Consensus 74 ~ 74 (176)
+
T Consensus 116 k 116 (120)
T PF08579_consen 116 K 116 (120)
T ss_pred H
Confidence 4
No 83
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=2.4e-06 Score=63.83 Aligned_cols=141 Identities=19% Similarity=0.181 Sum_probs=95.6
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
....+|.|...|.....-. +..-..|.-+...|.+.++++.|+-.|+...+.+.. +.+....+...+-+.|+.++|++
T Consensus 467 ~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 467 ATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred hhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHH
Confidence 3456777777777766542 224455666777778888888888888777765433 55556666677777888888888
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHC
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~ 149 (176)
++++....+.. |+-.--.....+...+++++|+..++++++ +.|+.. |..+.|+.-|.-+.+.
T Consensus 545 ~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 545 LYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 88887776655 555555556666677788888888887765 345544 7777777777666654
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.60 E-value=5e-06 Score=61.86 Aligned_cols=174 Identities=22% Similarity=0.222 Sum_probs=121.2
Q ss_pred CchhhCChhHHHHHHHHHhhC-----CC-CccH-HHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CC--CcChhhHH
Q 030489 1 MLIKECHLDAALKLFGQLTDR-----GL-EPDI-ITYNTIICGYCSLNRLDEAVQLFEKLTCV-----QL--KPNSITFT 66 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~--~~~~~~~~ 66 (176)
+|...|+++.|+.++++..+. |. .|.. ...+.+...|...+++++|+.+|+.+... |- +--..+++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN 287 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 377899999999999988765 21 2233 33445778899999999999999988742 21 11235567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cC-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCCC---
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLE-----KG-PKANVV-TYSCLIDGYFKSQNMKSAFDVYEEMCE---NNISPNIA--- 133 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~--- 133 (176)
.|..+|.+.|++++|...++...+ .+ ..|.+. .++.+...|...+++++|..++....+ .-..++..
T Consensus 288 nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a 367 (508)
T KOG1840|consen 288 NLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLA 367 (508)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHH
Confidence 777889999999998888776543 11 122333 366677888899999999999987533 22222221
Q ss_pred -------------CChHHHHHHHHHHHHC----CC--CCc-HHHHHHHHHHhhcccCcccc
Q 030489 134 -------------GRPTEAMQLYDSMLRN----GI--MPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 -------------~~~~~a~~~~~~m~~~----g~--~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
|++++|.+++++..+. +. .+. ...++.+...|.+.++..+|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 9999999999888732 22 222 34667888888888777655
No 85
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=3e-06 Score=61.38 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=110.9
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.|++++|.+.|++.....-.-+...|| +-..+-..|++++|++.|-.+... +.-+..+..-+.+.|-...+..+|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 688999999999888764333334444 334467889999999998776543 123666777778888888888889888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCC
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGI 151 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~ 151 (176)
+-+.... ++.|+.+...|.+.|-+.|+-..|++++-+--. .-|... .-+++++.+|++..- +
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 8877665 556788888888888888888888776644221 122221 556777777776643 4
Q ss_pred CCcHHHHHHHHHH-hhcccCcccc
Q 030489 152 MPDGLLLSTLADY-NLQSSGSQEH 174 (176)
Q Consensus 152 ~p~~~~~~~l~~~-~~~~g~~~~A 174 (176)
.|+..-|-.++.. +.++|+.+.|
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHH
Confidence 7777777766644 3455665544
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.59 E-value=3.3e-06 Score=52.07 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=77.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|+.+...+ +.+...|..+...+...|++++|..++++....+ +.+..++..+..++...|++++|
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 457899999999999998875 4488999999999999999999999999987764 44677888888999999999999
Q ss_pred HHHHHHHHhcC
Q 030489 82 TMMFSKMLEKG 92 (176)
Q Consensus 82 ~~~~~~~~~~~ 92 (176)
...|+...+..
T Consensus 105 ~~~~~~al~~~ 115 (135)
T TIGR02552 105 LKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHhc
Confidence 99999998865
No 87
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=8.2e-06 Score=53.85 Aligned_cols=116 Identities=14% Similarity=0.193 Sum_probs=91.9
Q ss_pred CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHhcCC--HHHH
Q 030489 40 LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-YFKSQN--MKSA 116 (176)
Q Consensus 40 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a 116 (176)
.++.++++..++...+.. +.|...|..+...|...|+++.|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677777777766654 448889999999999999999999999999998765 88888888886 467777 5999
Q ss_pred HHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCCCCCcHHHH
Q 030489 117 FDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLL 158 (176)
Q Consensus 117 ~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~ 158 (176)
.+++++..+.+...... |++++|...|+++.+. ..|+..-+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 99999998765543333 9999999999999865 34444433
No 88
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.57 E-value=7.6e-06 Score=49.11 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--cChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCL 103 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 103 (176)
.++..+...+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|.+.|+.+....... ....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677777888888888888887754211 113455567777888888888888888877653221 24556777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
..++.+.|++++|...++++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 77778888888888888877664
No 89
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.56 E-value=2.5e-07 Score=52.39 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=44.7
Q ss_pred hCChhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
.|+++.|+.+++++.+... .++...+..+..++.+.|++++|+.+++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4666777777777665532 12344455566667777777777777766 22211 122333344566666777777766
Q ss_pred HHHH
Q 030489 84 MFSK 87 (176)
Q Consensus 84 ~~~~ 87 (176)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 90
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.56 E-value=1.2e-07 Score=42.86 Aligned_cols=29 Identities=41% Similarity=0.761 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 127 (176)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 91
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.55 E-value=1.2e-07 Score=42.87 Aligned_cols=29 Identities=34% Similarity=0.881 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 57 (176)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555555443
No 92
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.50 E-value=4.8e-05 Score=48.86 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHh-hCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc--ChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 8 LDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP--NSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 8 ~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
+..+...+..+. ..+..-....|..+...+...|++++|+..|+........+ ...++..+...+...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555553 33333346778888888999999999999999987653222 235788888999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYF-------KSQNMKSAFDVYEE 122 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~ 122 (176)
++........ ...++..+...+. +.|+++.|...+++
T Consensus 95 ~~~Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9998876433 5566777777777 67777776666543
No 93
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.50 E-value=5.6e-07 Score=50.91 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHHHHhCCCC-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 030489 40 LNRLDEAVQLFEKLTCVQLK-PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118 (176)
Q Consensus 40 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 118 (176)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 68899999999999887432 2455566689999999999999999998 433333 34455566899999999999999
Q ss_pred HHHH
Q 030489 119 VYEE 122 (176)
Q Consensus 119 ~~~~ 122 (176)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 94
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.49 E-value=6.3e-05 Score=48.53 Aligned_cols=132 Identities=16% Similarity=0.160 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 456678888889999999999999999886543332 467888889999999999999999999887543 67778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCc
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 171 (176)
...|...|+...+..-++.... .+++|.+++++.... .|+. |..++..+...|+.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~~ 167 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------LFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------HHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCcc
Confidence 8888888876555544443332 246677777777653 3433 66666666555543
No 95
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=1.1e-05 Score=48.47 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=77.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--cChhhHHHHHHHHHhcCC
Q 030489 2 LIKECHLDAALKLFGQLTDRGLE--PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PNSITFTILIDAFCKEGR 77 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~ 77 (176)
+.+.|++++|.+.|..+.+.... .....+..+..++.+.|++++|++.|+........ .....+..+..++.+.|+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 45789999999999999876321 12467778999999999999999999998875322 124567778888999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHH
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYS 101 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~ 101 (176)
.++|...++++.+..+. +..+..
T Consensus 92 ~~~A~~~~~~~~~~~p~-~~~~~~ 114 (119)
T TIGR02795 92 KEKAKATLQQVIKRYPG-SSAAKL 114 (119)
T ss_pred hHHHHHHHHHHHHHCcC-ChhHHH
Confidence 99999999999988543 444443
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.46 E-value=1.5e-05 Score=49.99 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=83.2
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+....-.+...+...|++++|..+|+.+...... +..-|..|-.++-..|++++|+..|......++. |..++-.+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3455556777788999999999999998876533 6667778888899999999999999999988865 8999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 030489 106 GYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~ 125 (176)
++...|+.+.|.+.|+....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999997765
No 97
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=4.2e-05 Score=55.49 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF 108 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (176)
...+|+..+...++++.|+++++++.+.. |+ ....+...+...++-.+|.+++.+..+... .+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34455555566666666666666666552 33 333455666666666666666666665432 25555555556666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHCCCCCcH-HHHHHHHHHhhcccCcccc
Q 030489 109 KSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDG-LLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 109 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 174 (176)
+.++++.|+.+.+++.+. .|+. .+|..|..+|.+.|+++.|
T Consensus 246 ~k~~~~lAL~iAk~av~l-------------------------sP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-------------------------SPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-------------------------CchhHHHHHHHHHHHHhcCCHHHH
Confidence 666666666666665442 4443 3666777777777777665
No 98
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-05 Score=59.75 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=96.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--CCC----cChhhHHHHHHHHHhc
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLK----PNSITFTILIDAFCKE 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~----~~~~~~~~ll~~~~~~ 75 (176)
|.+-+.++.|.+.|.+..... |.|+...+-+.......+.+.+|..+|+..... .+. --..+++.|..+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 456778888999998887764 447888888888888888999999998776521 011 1344577888889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+.+++|+..+++....... +..++.++...|...|+++.|...|.+...
T Consensus 469 ~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred hhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999988887554 889999999999999999999999987654
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.45 E-value=1.8e-06 Score=60.21 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK-- 109 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 109 (176)
.....+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+.+- | .+...+..++..
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e--D-~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE--D-SILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC--C-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--c-HHHHHHHHHHHHHH
Confidence 3334455677888887777532 3556666677778888888888888888876532 2 233334443332
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCc
Q 030489 110 --SQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171 (176)
Q Consensus 110 --~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 171 (176)
.+.+.+|..+|+++.+. ..++.. |++++|.+++.+..+.+ .-++.+...++-+....|+.
T Consensus 178 ~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-T
T ss_pred hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCC
Confidence 23578888888887553 222222 88888888877766432 22344556666666666654
No 100
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.45 E-value=5.9e-06 Score=46.84 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=74.1
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|...++...+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...|+++.|
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHH
Confidence 456899999999999998764 3355788889999999999999999999987764 33556788888999999999999
Q ss_pred HHHHHHHHhcC
Q 030489 82 TMMFSKMLEKG 92 (176)
Q Consensus 82 ~~~~~~~~~~~ 92 (176)
...+....+..
T Consensus 88 ~~~~~~~~~~~ 98 (100)
T cd00189 88 LEAYEKALELD 98 (100)
T ss_pred HHHHHHHHccC
Confidence 99998887543
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.44 E-value=1.8e-05 Score=57.05 Aligned_cols=89 Identities=17% Similarity=0.086 Sum_probs=73.6
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
...|++++|+++|++..+.. +.+...|..+..+|.+.|++++|+..+++...... .+...|..+..+|...|+++.|.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 46789999999999998875 33778888888899999999999999998887642 36677888888899999999999
Q ss_pred HHHHHHHhcCC
Q 030489 83 MMFSKMLEKGP 93 (176)
Q Consensus 83 ~~~~~~~~~~~ 93 (176)
..|++..+.+.
T Consensus 91 ~~~~~al~l~P 101 (356)
T PLN03088 91 AALEKGASLAP 101 (356)
T ss_pred HHHHHHHHhCC
Confidence 99999887653
No 102
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=4.9e-05 Score=55.35 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
++..+..|...|-+.|+-.+|.+.+-+--+ -++.+..|...|...|....-+++++.+|+...- +.|+..-|..++.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIA 667 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHH
Confidence 344444444444444444444444322111 1233444444455555555555555555555432 4566677766654
Q ss_pred H-HHhcCCHHHHHHHHHHHHH
Q 030489 106 G-YFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 106 ~-~~~~g~~~~a~~~~~~m~~ 125 (176)
. +.+.|++++|+.++++...
T Consensus 668 sc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 3 3445777777777766543
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=9.1e-05 Score=49.84 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=96.1
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
..|+.+.|..+++++..+= +-+..+-..-.-.+--.|++++|+++|+.+.+.. +.|..++-.=+...-..|..-.|++
T Consensus 64 d~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 4567777888887776652 2222222222222345677888888888887765 3355666555556666666667777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------------CChHHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------------GRPTEAMQLYDSML 147 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------------~~~~~a~~~~~~m~ 147 (176)
-+....+. +..|...|.-+.+.|...|++++|.-+++++.-. .|... ...+-+.+++.+..
T Consensus 142 ~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 142 ELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77777766 5669999999999999999999999999998764 33333 55667777777776
Q ss_pred HC
Q 030489 148 RN 149 (176)
Q Consensus 148 ~~ 149 (176)
+.
T Consensus 219 kl 220 (289)
T KOG3060|consen 219 KL 220 (289)
T ss_pred Hh
Confidence 54
No 104
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.40 E-value=1.3e-05 Score=52.67 Aligned_cols=105 Identities=22% Similarity=0.287 Sum_probs=83.9
Q ss_pred CcChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 59 KPNSITFTILIDAFCK-----EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
..|-.+|..+++.|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+ |.+. -..+|+.+-. ...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-----hyp 116 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-----HYP 116 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc-----cCc
Confidence 4588899999998865 46788888999999999999999999999999976 4443 3334444321 122
Q ss_pred CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccC
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 170 (176)
.+.+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 4568899999999999999999999999999987653
No 105
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.38 E-value=2.6e-06 Score=65.91 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=56.7
Q ss_pred HHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------------------------CCCcHHHHHHH
Q 030489 48 QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG------------------------PKANVVTYSCL 103 (176)
Q Consensus 48 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~l 103 (176)
.++-.++..|+.|+..||..+|.-|+..|+.+.|- +|.-|.-.+ -.|...||..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 46778888999999999999999999999999998 777664321 25778999999
Q ss_pred HHHHHhcCCHHH
Q 030489 104 IDGYFKSQNMKS 115 (176)
Q Consensus 104 ~~~~~~~g~~~~ 115 (176)
..+|..+||...
T Consensus 90 l~ayr~hGDli~ 101 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHhccchHH
Confidence 999999999654
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=1.5e-05 Score=49.99 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=77.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+...|++++|.++|+.+....+ -+..-|-.|.-++-..|++++|+..|.......+ -|+..+-.+-.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 4578999999999999988753 3778888999999999999999999999988774 4888899999999999999999
Q ss_pred HHHHHHHHhc
Q 030489 82 TMMFSKMLEK 91 (176)
Q Consensus 82 ~~~~~~~~~~ 91 (176)
.+-|+..+..
T Consensus 123 ~~aF~~Ai~~ 132 (157)
T PRK15363 123 IKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 107
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=0.00028 Score=50.11 Aligned_cols=126 Identities=14% Similarity=0.066 Sum_probs=86.2
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC--HHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR--MDD 80 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~ 80 (176)
..++.++|+.+...+.+.+ +-+..+|+.--.++...| .+++++..++++.+...+ +..+|+.---.+.+.|+ .++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 4567778888888877764 225566776666666666 578888888888776543 55556644444445554 256
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 132 (176)
+..+++.+.+.+.+ +..+|+...-++...|+++++++.++++.+.+.....
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 77777777777655 7788888888888888888888888888766544443
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=4.3e-05 Score=47.89 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH--HHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV--VTYSC 102 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 102 (176)
...|..++..+ ..++...+...++.+......-. ....-.+...+...|++++|...|+........++. ...-.
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 44566666666 58889999999999887632211 122233457788999999999999999987644433 34555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CChHHHHHHHHH
Q 030489 103 LIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------GRPTEAMQLYDS 145 (176)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~~a~~~~~~ 145 (176)
|...+...|++++|+..++........+... |+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7788899999999999997633222111111 777777777664
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.33 E-value=5.8e-05 Score=53.62 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=81.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|+.++|.++.++..+++..|+ ... .-.+.+-++...-++..+...+.. +-++..+.+|-..|.+.+.+.+|
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHH
Confidence 3567788888888877777665555 222 223456667766666666555442 22446777788888888888888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
.+.|+...+. .|+..+|+.+..++.+.|+..+|.+++++..
T Consensus 348 ~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 348 SEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8888865554 5788888888888888888888888887754
No 110
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=4.4e-05 Score=55.03 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=80.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
-...+...|++++|++.|.+..+.... +...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 345667899999999999999887533 6778888889999999999999999999988654 78889999999999999
Q ss_pred HHHHHHHHHHHHHCC
Q 030489 113 MKSAFDVYEEMCENN 127 (176)
Q Consensus 113 ~~~a~~~~~~m~~~~ 127 (176)
+++|...|++....+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987643
No 111
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.31 E-value=0.00012 Score=55.10 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCcC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (176)
..+...|-..|++++|+++.+....+ .|+ +..|..-.+.+-+.|++.+|.+.++.....+.. |...-+.....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 33344455555555555555555544 232 344444455555555555555555555555443 55555555555555
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 030489 110 SQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 110 ~g~~~~a~~~~~~m~~~~ 127 (176)
.|+.++|.+++......+
T Consensus 275 a~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTRED 292 (517)
T ss_pred CCCHHHHHHHHHhhcCCC
Confidence 555555555555544333
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.28 E-value=8.9e-05 Score=57.67 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=99.1
Q ss_pred hCChhHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+..+....+...+.+.+..| ++..|.-+..++.+.|++.+|+.+|..+......-+...|-.+..+|...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 344455555556666666333 578899999999999999999999999988755557789999999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+.|+......+. +...-..|-..+-+.|++++|.+.++.+.
T Consensus 470 e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999988654 78888889999999999999999999875
No 113
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.26 E-value=9.1e-05 Score=53.24 Aligned_cols=97 Identities=9% Similarity=0.129 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc--HHHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KAN--VVTYSCL 103 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l 103 (176)
......+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++...... .++ ...|..+
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3444455566777778888888887777654 22455666677777777888888887777665432 122 2335566
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 030489 104 IDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~ 124 (176)
...+...|++++|..++++..
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 777777788888888877764
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0002 Score=48.62 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=62.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh----cCC
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EGR 77 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~ 77 (176)
|+..|++++|++..+... +......=...+.+..+++-|.+.+++|.+. -+..|.+-|..++.+ .+.
T Consensus 118 ~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 455666666666655411 2222222233344555666666666666653 144455444444432 334
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+..|.-+|++|.+. .+|+..+.+....++...|++++|..+++.....
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 56666666666554 3456666666666666666666666666665543
No 115
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.25 E-value=3.6e-05 Score=53.65 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHH-HHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICG-YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
..+.|..+|.+.++.+ ..+.++|-..... +...++.+.|.++|+...+. +..+...|..-++.+.+.++.+.|..+|
T Consensus 16 g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 16 GIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3555566665555432 2233333333333 22234444466666555543 2334455555555555556666666666
Q ss_pred HHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 86 SKMLEKGPKANV---VTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 86 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+..... +.++. ..|...++.=.+.|+.+.+.++.+++.+
T Consensus 94 er~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 94 ERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 655543 22111 3555555555555666655555555543
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.24 E-value=5e-06 Score=44.87 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=31.6
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 56 (176)
.+.|++++|+++|+.+.+.. |-+...+..+..+|.+.|++++|..+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566666666666666553 225555666666666666666666666665554
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.24 E-value=0.0001 Score=60.06 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 88 (176)
+...++|+++.+.. -...+|..|...|.+...+++|.++++.|.+. +......|...+..+.+.++-++|..++.+.
T Consensus 1514 esl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44455555555431 12344445555555666666666666655543 1234455555555555555555555555544
Q ss_pred HhcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 89 LEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 89 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
.+.=+. -.+......+..-.+.|+.+.+..+|+...
T Consensus 1591 L~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1591 LKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred HhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 432111 012222223333344455555555555443
No 118
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.21 E-value=0.00014 Score=46.97 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=59.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD--IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
+.+.|++++|...|++..+....++ ...+..+...+.+.|++++|+..+.+..+... -+...+..+...+...|+.
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCh
Confidence 4567999999999999987643332 47888999999999999999999999887532 2456666677777777763
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00014 Score=53.99 Aligned_cols=167 Identities=19% Similarity=0.170 Sum_probs=104.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++.+|.=.|+..++.. |-+...|..|.......++-..|+..+.+-.+.... |....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 356788888888888887775 336788888888888888877787777776664322 334444444445555544444
Q ss_pred HHHHHHH-----------------------------------------H-hcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 030489 82 TMMFSKM-----------------------------------------L-EKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 82 ~~~~~~~-----------------------------------------~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
.+.++.- . +.+..+|..+...|--.|.-.|++++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 4444333 2 222235666777777777777778888887
Q ss_pred HHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCCCcHH-HHHHHHHHhhcccCcccc
Q 030489 120 YEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 120 ~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 174 (176)
|+..... .|+.. .+.++|+..+.+..+. +|+.. +...|.-+|+..|.+++|
T Consensus 453 f~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 453 FEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 7776543 44443 6677777777777753 55532 444455556666665554
No 120
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.20 E-value=0.00049 Score=52.40 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=122.1
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.+.++-|..+|....+. ++.....|......=-..|..+....++++....- +-....|-...+-+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHH
Confidence 45667777888888887776 34467778777777777888888888888877652 33555666666777788999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~~ 149 (176)
..++.+..+.... +...|-.-+..-....+++.|..+|.+.... .++.. +..++|++++++..+.
T Consensus 604 r~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999998888655 8888989999999999999999999887653 33333 8888999988887764
Q ss_pred CCCCcHH-HHHHHHHHhhcccCcccc
Q 030489 150 GIMPDGL-LLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 150 g~~p~~~-~~~~l~~~~~~~g~~~~A 174 (176)
.|+.. .|..+-+.+-+.++++.|
T Consensus 681 --fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 681 --FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred --CCchHHHHHHHhHHHHHHHHHHHH
Confidence 56655 444555666665555543
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.19 E-value=0.00038 Score=56.94 Aligned_cols=163 Identities=12% Similarity=0.127 Sum_probs=104.2
Q ss_pred hhCChhHHHHHHHHHhhC-CCCc---cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH
Q 030489 4 KECHLDAALKLFGQLTDR-GLEP---DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 79 (176)
+.++.++|.+++++.... +++- -...|.++++.-.--|.-+...++|++..+. .-....|..|...|.+.+..+
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcch
Confidence 456778888888877754 2221 2356777777777777777888888887765 223456777888888888888
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSM 146 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m 146 (176)
+|-++|+.|.+. +.-....|...+..+.+..+-++|..++.+..+.=...... |+.+++..+|+..
T Consensus 1548 ~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1548 EADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred hHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 888888888765 22467788888888888888888888887765532211111 5555555555555
Q ss_pred HHCCCCCcHHHHHHHHHHhhcccC
Q 030489 147 LRNGIMPDGLLLSTLADYNLQSSG 170 (176)
Q Consensus 147 ~~~g~~p~~~~~~~l~~~~~~~g~ 170 (176)
...- +--...|+.++..=.++|+
T Consensus 1627 l~ay-PKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1627 LSAY-PKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HhhC-ccchhHHHHHHHHHHccCC
Confidence 5331 1123345555555444444
No 122
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00018 Score=52.74 Aligned_cols=141 Identities=14% Similarity=0.119 Sum_probs=115.5
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.|+...|.+-|+..++.... +...|..+..+|...++.++..+.|+.....+.. |+.+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 57788888899888877433 3444888888999999999999999998877643 777888777777788999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHH
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~ 148 (176)
|++.+...+. +...|--+..+..+.+.+++++..|++....-...... ++++.|.+.|+..++
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999988765 88888888888899999999999999987753322222 999999999998874
No 123
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.17 E-value=8.1e-05 Score=58.41 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=99.9
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCcChhhHHHHHHHHHh----------
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCK---------- 74 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~---------- 74 (176)
+...+|...++...+.+ ..++..+..+...+.+...|..|.+-|....+.- ..+|..+.-.|-+.|..
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 34445555555554432 3344455455555555555555555444433321 11343333344443332
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCCC----------CChHHHHH
Q 030489 75 --EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIA----------GRPTEAMQ 141 (176)
Q Consensus 75 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~----------~~~~~a~~ 141 (176)
.+..++|+++|.+..+..+. |...-|-+.-.++..|++.+|..+|.++.+... .++.. |++-.|++
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence 23456788888887777654 777777788888888888888888888876544 22222 88888888
Q ss_pred HHHHHH-HCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 142 LYDSML-RNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 142 ~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.|+... ...-.-+..+...|..++.+.|++.+|
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 887766 333344566777777888777776654
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.00017 Score=57.31 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=84.4
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-------------------Chh
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-------------------NSI 63 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-------------------~~~ 63 (176)
.+.+++++|.++.+...+..+. ....|-.+...+.+.++..++..+ .+... +.. +..
T Consensus 42 ~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~~i~~~~~~k~ 117 (906)
T PRK14720 42 KSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICDKILLYGENKL 117 (906)
T ss_pred HhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHHHHHhhhhhhH
Confidence 3678888888888866665321 233333333356666666665555 22221 111 225
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+..+..+|-+.|+.++|..+|+++.+.++. |..+.|.+...|... ++++|.+++.+....
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 6677888899999999999999999999855 999999999999999 999999999887654
No 125
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=7.9e-05 Score=51.49 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+++....+-++-+...+. -...||..++-.||+..-++.|
T Consensus 290 ~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHH
Confidence 444444444444443322 3356888888888887655544
No 126
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.12 E-value=0.00072 Score=51.56 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=109.5
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.|++..|..++.+..+.++. +...|-.-+..-.....+++|..+|.+.... .|+...|.--++.-.-.++.++|.++
T Consensus 597 agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 56777777777777766533 6677777777777777777777777776553 55666666656655666777777777
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCC
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGI 151 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~ 151 (176)
+++..+. ++.-...|..+-..+-+.++.+.|...|..=.. ..|+.. |..-+|..++++..-.+
T Consensus 674 lEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 674 LEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 7776665 333455566666666677777777766654221 233333 78888888888887553
Q ss_pred CCcHHHHHHHHHHhhcccCcccc
Q 030489 152 MPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 152 ~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.-+...|...|..=.+.|+.++|
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHH
Confidence 23456777888888888887765
No 127
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=0.00015 Score=50.56 Aligned_cols=133 Identities=11% Similarity=0.119 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA-FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (176)
.+|..+|+..-+.+..+.|.++|.+..+.+ ..+..+|-..... +.-.++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 478899999999999999999999998653 2244455444444 33356777799999999887 55689999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCC-C--------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHh
Q 030489 107 YFKSQNMKSAFDVYEEMCENNISPNI-A--------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165 (176)
Q Consensus 107 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~--------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 165 (176)
+.+.|+.+.|..+|++.... +.+.. . |+.+.+.++.+++.+. .|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999998765 44444 2 9999999999999874 56656666665544
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00012 Score=49.65 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=78.4
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 12 LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
-++.+.+.......+......-...|...+++++|++..+... +......=+..+.+..+.+-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444444444334333333344455667777777776665511 2333333345556666777777777777654
Q ss_pred CCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHHCCCCCcH
Q 030489 92 GPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDG 155 (176)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~~g~~p~~ 155 (176)
. +..|.+-|..++.+ .+....|.-+|++|.+. ..|+.. +++++|..+++........ ++
T Consensus 167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 2 44555555555544 34567777777777542 222222 7777777777777644222 33
Q ss_pred HHHHHHHHHhhcccC
Q 030489 156 LLLSTLADYNLQSSG 170 (176)
Q Consensus 156 ~~~~~l~~~~~~~g~ 170 (176)
.|...++-+-...|.
T Consensus 242 etL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 242 ETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhCC
Confidence 444444433333333
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.10 E-value=0.00062 Score=51.53 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=92.9
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
..|+.++|.+....-.... .-+...|+.+.-.+....++++|++.|......+.. |...+.-+.-.-+..++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHH
Confidence 4566777777766655543 336677777777777777888888888777665422 44555544444455555555555
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCCC-----------------------------
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIA----------------------------- 133 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~----------------------------- 133 (176)
...++.+... .....|..+..++.-.|++..|..+.++..+... .|+..
T Consensus 131 tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 5444444422 1334455555555555566666555555544332 11111
Q ss_pred -----------------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 030489 134 -----------------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163 (176)
Q Consensus 134 -----------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 163 (176)
++.++|..++..+... .||..-|...+.
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLE 260 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence 8999999999999876 677766654443
No 130
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.10 E-value=4e-05 Score=41.43 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 030489 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMCE 125 (176)
Q Consensus 62 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 125 (176)
..+|..+...+...|++++|+..|++.++.+.. +...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555566666666666666666655433 5555666666666665 46666666655443
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00023 Score=54.45 Aligned_cols=145 Identities=18% Similarity=0.148 Sum_probs=110.3
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CC-----------------
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-----QL----------------- 58 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~----------------- 58 (176)
+|+..|+..+|..+..+..+. +|++..|..+.+......-+++|.++.+.--.. |.
T Consensus 433 CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~ 510 (777)
T KOG1128|consen 433 CYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLER 510 (777)
T ss_pred HHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHH
Confidence 367788888888888887774 788888888888887777788888777653221 00
Q ss_pred -----CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 59 -----KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 59 -----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
+.-..+|..+--+..+.+++..|.+.|..-....+. +...||.+-.+|.+.++-.+|...+.+..+.+..++..
T Consensus 511 sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 511 SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQI 589 (777)
T ss_pred HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCee
Confidence 112334444445556677888888888877766543 77789999999999999999999999998877666665
Q ss_pred -----------CChHHHHHHHHHHHH
Q 030489 134 -----------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 134 -----------~~~~~a~~~~~~m~~ 148 (176)
|.+++|++.+.++..
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999998873
No 132
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.08 E-value=0.0012 Score=49.96 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=97.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|-..|++++|+++.+...++. |..+..|..-.+.+-..|++.+|.+.++..++-... |...-+-....+.+.|+.++|
T Consensus 204 yd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A 281 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEA 281 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHH
Confidence 346789999999999999884 334788889999999999999999999998877543 777777788889999999999
Q ss_pred HHHHHHHHhcCCCCcHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTY--------SCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.+++....+.+..|....+ .....+|.+.|++..|++-|..+.+
T Consensus 282 ~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 282 EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999877654443332 3356788999999999999977643
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.08 E-value=0.00016 Score=46.40 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=63.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHH-------
Q 030489 3 IKECHLDAALKLFGQLTDRGLEP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFC------- 73 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~------- 73 (176)
...|++++|+..|+........+ ...+|..+...+...|++++|+..++...... +....++..+...+.
T Consensus 46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~ 124 (168)
T CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAI 124 (168)
T ss_pred HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHH
Confidence 45799999999999997653332 34688999999999999999999999988653 224455666666666
Q ss_pred hcCCHHHHHHHHHHH
Q 030489 74 KEGRMDDATMMFSKM 88 (176)
Q Consensus 74 ~~~~~~~a~~~~~~~ 88 (176)
+.|+++.|...+++.
T Consensus 125 ~~g~~~~A~~~~~~a 139 (168)
T CHL00033 125 EQGDSEIAEAWFDQA 139 (168)
T ss_pred HcccHHHHHHHHHHH
Confidence 778877665555443
No 134
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.07 E-value=4.9e-05 Score=40.58 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=26.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
..+.+.|++++|...|+++.+..+. +...+..+..++...|++++|...|++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555544422 44555555555555555555555555543
No 135
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00029 Score=52.45 Aligned_cols=139 Identities=19% Similarity=0.104 Sum_probs=105.0
Q ss_pred ChhHHHHHHHHHh-hCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 7 HLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 7 ~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
.+....++|-++. +.+..+|+.+...|.-.|.-.|++++|++.|+...+... -|..+||.|-.+++...+.++|+..|
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3455666776665 444457889999999999999999999999999988653 37889999999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCCC-CChHHHHHHHHHHH
Q 030489 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS---PNIA-GRPTEAMQLYDSML 147 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~-~~~~~a~~~~~~m~ 147 (176)
.+..+..+. -+++...|.-.|...|.+++|.+.|-........ +... ..-+.+++.++...
T Consensus 488 ~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~al 552 (579)
T KOG1125|consen 488 NRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLAL 552 (579)
T ss_pred HHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHH
Confidence 999988544 6677777888899999999999988766442222 2211 22355666665443
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.01 E-value=0.00059 Score=41.21 Aligned_cols=89 Identities=22% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHh
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFK 109 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 109 (176)
..++-..|+.++|+.+|++....|...+ ...+-.+-+++...|++++|..+|++.....+. .+......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444455555555555555555544322 122333444555555555555555555443211 011111222234444
Q ss_pred cCCHHHHHHHHHH
Q 030489 110 SQNMKSAFDVYEE 122 (176)
Q Consensus 110 ~g~~~~a~~~~~~ 122 (176)
.|++++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 5555555555443
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0013 Score=45.37 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=72.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.++|++|+..|.+.++.. +-|..-|..-..+|.+.|.++.|++=.+........ ...+|..|-.+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 46788888888888888774 337777778888888888888888888777665322 4567888888888888888888
Q ss_pred HHHHHHHhcCCCCcHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSC 102 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ 102 (176)
+.|+...+. .|+-.+|-.
T Consensus 170 ~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHhhhcc--CCCcHHHHH
Confidence 888887765 345444433
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.00 E-value=6.8e-05 Score=40.50 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcC
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG-RMDDATMMFSKMLEKG 92 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~ 92 (176)
+..+|..+...+...|++++|+..|.+..+... -+...|..+..++.+.| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 567888999999999999999999999888753 36778888889999999 7999999999887653
No 139
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.00 E-value=4e-05 Score=41.25 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=39.7
Q ss_pred HhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 030489 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 38 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
.+.|++++|+++|+.+...... +......+..+|.+.|++++|.++++.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4677888888888887766432 66667777888888888888888888877764
No 140
>PLN02789 farnesyltranstransferase
Probab=97.99 E-value=0.0024 Score=45.42 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=108.3
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCCh--hHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL--DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
+++++++.++.+.+.+++ +..+|+..-..+.+.|.. ++++.+++.+.+...+ |..+|+...-++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHH
Confidence 578899999998887544 667787666566666653 6788888888877644 788888888888888999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHCCCCCCCC---------------CChHHHHHH
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKS---QNM----KSAFDVYEEMCENNISPNIA---------------GRPTEAMQL 142 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~~~~m~~~~~~~~~~---------------~~~~~a~~~ 142 (176)
++++++.++. +..+|+.....+.+. |.+ ++.+....+.......-... +...+|.+.
T Consensus 165 ~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 165 CHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 9999988766 788888877766554 222 45666665655443222121 233457777
Q ss_pred HHHHHHCCCCCcHHHHHHHHHHhhc
Q 030489 143 YDSMLRNGIMPDGLLLSTLADYNLQ 167 (176)
Q Consensus 143 ~~~m~~~g~~p~~~~~~~l~~~~~~ 167 (176)
+.+....+ ..+......|+..|+.
T Consensus 244 ~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 244 CLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHhhccc-CCcHHHHHHHHHHHHh
Confidence 77766532 2245566677777764
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.97 E-value=9.1e-05 Score=39.49 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=32.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556666666666666666553 224555555556666666666666666666544
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.97 E-value=0.00068 Score=40.93 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=75.8
Q ss_pred hhhCChhHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC----hhhHHHHHHHHHhcC
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPD--IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN----SITFTILIDAFCKEG 76 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~ 76 (176)
-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.+++...... |+ ......+..++...|
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCC
Confidence 357999999999999999886654 4577788999999999999999999887652 33 222233445778899
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 030489 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (176)
+.++|...+-..... +...|..-|..|..
T Consensus 90 r~~eAl~~~l~~la~----~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 90 RPKEALEWLLEALAE----TLPRYRRAIRFYAD 118 (120)
T ss_pred CHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 999999988766532 44466666666653
No 143
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.001 Score=49.65 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=89.8
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--C-------------------------
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--Q------------------------- 57 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~------------------------- 57 (176)
.|+..+|.+.|.....-. +.-...|-.+...|+-.|..++|+..|...-+- |
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 356666666665544332 112345555555555555555555555433221 1
Q ss_pred -----C-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 58 -----L-KPNSITFTILIDAFCKEGRMDDATMMFSKMLE----KGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 58 -----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+ +.|+...+-+--.....+.+.+|..+|+.... .+. ..-..+++.|..+|.+.+.+++|+..+++...
T Consensus 404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 12344444444444455666677777665541 111 11334577777788888888888888887665
Q ss_pred CCCCCCCC-----------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhc
Q 030489 126 NNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167 (176)
Q Consensus 126 ~~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 167 (176)
........ |.++.|.+.|.+... +.|+..+...++..+..
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 43322222 888888888877763 47777777766665543
No 144
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0025 Score=44.13 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=85.5
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCcHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG---RMDDATMMFSKMLEKGPKANVVTY 100 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 100 (176)
+-|...|-.|..+|...|++..|..-|....+.. .+++..+..+..++..+. .-.++.++|+++...+.. ++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4589999999999999999999999999988763 336666666666654432 457899999999988755 88899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 030489 101 SCLIDGYFKSQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 101 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 129 (176)
..|...+...|++.+|...|+.|.+....
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999876433
No 145
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00051 Score=51.47 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=81.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHH--HhcCCHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF--CKEGRMD 79 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~ 79 (176)
+.+.+++++|+.....+...+ +-+...+..-+-+..+.+++++|+.+.+.-.. .. ....|. +=.+| .+.+..+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~-~~~~~~-fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LL-VINSFF-FEKAYCEYRLNKLD 96 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hh-hcchhh-HHHHHHHHHcccHH
Confidence 456789999999999999876 55778888888889999999999966543221 11 111111 23444 5788899
Q ss_pred HHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 80 DATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
+|.+.++- ..+ +..+...-...+.+.|++++|+.+|+.+.+++.
T Consensus 97 ealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 97 EALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 99988872 222 233455556677888999999999998865543
No 146
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.92 E-value=0.00063 Score=41.47 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHh---------------CCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTC---------------VQLKPNSITFTILIDAFCKEGRMDDATMMFSKML- 89 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 89 (176)
|..++..+|.++++.|+.+....+.+..-. ....|+..+..+++.+|+..+++..|.++.+.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 467889999999999999999888875421 1245788999999999999999999999999887
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCC
Q 030489 90 EKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
..+++.+..+|..|++.....-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 56788889999999986655433
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.92 E-value=0.0013 Score=49.04 Aligned_cols=164 Identities=15% Similarity=0.237 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN---RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.+++.+++++..+.-...+..+|..+...=-..- ..+.....++++...-..--.-+|...|+.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566655544322334444444333221111 2556666666666542222234567778887788888888888
Q ss_pred HHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCCC----------CChHHHHHHHHHHHHCCCC
Q 030489 85 FSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEE-MCENNISPNIA----------GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 85 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~-m~~~~~~~~~~----------~~~~~a~~~~~~m~~~g~~ 152 (176)
|.+..+.+..+ .+.+.+++|+-||. ++..-|.++|+. |+..|-.|-.. ++-+.+..+|++....++.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 88888776665 77778888887764 577788888875 33333333322 7778888888888876665
Q ss_pred Cc--HHHHHHHHHHhhcccCcc
Q 030489 153 PD--GLLLSTLADYNLQSSGSQ 172 (176)
Q Consensus 153 p~--~~~~~~l~~~~~~~g~~~ 172 (176)
|+ ...|..++..=+.-|++.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHH
Confidence 55 357777777766666653
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.91 E-value=0.00053 Score=47.91 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 100 YSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+..+...+.+.|++++|.++|+++.
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 149
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.0019 Score=47.57 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=53.3
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
+++..|.++|++...-. ..+...|-..+.+=.++.....|..++++....-...| ..|.--+-.=-..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHH
Confidence 44555666666655443 23555555555555555555555555555444311111 11222222222334555555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
+.-.+. .|+...|++.|+.=.+-..++.|..++++.
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 544432 345555555555555555555555555544
No 150
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.91 E-value=0.0013 Score=45.46 Aligned_cols=100 Identities=18% Similarity=0.156 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcHHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP--NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSC 102 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 102 (176)
...|...+....+.|++++|+..|+...+..... ....+..+..+|...|++++|...|+.+.+.-+. .....+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3456666666677899999999999988763221 1356778889999999999999999999865322 23455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 103 LIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+...+...|++++|..+|+++.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677888999999999999988764
No 151
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.88 E-value=0.0012 Score=41.28 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
...++..+...|++++|..+.+.+....+ .+...|..+|.+|...|+...|.+.|+++..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566677889999999999999998865 4999999999999999999999999998743
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=97.86 E-value=0.0022 Score=40.67 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=82.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
-....-+...|++++|..+|.-+...++- +..-+..|..++-..+++++|...|......+.. |..++-....+|...
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 34455566899999999999888776543 5666777778888889999999999887766543 666777888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHH
Q 030489 111 QNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSML 147 (176)
Q Consensus 111 g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~ 147 (176)
|+.+.|...|+..... |....-.++|..+++.+.
T Consensus 119 ~~~~~A~~~f~~a~~~---~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 119 RKAAKARQCFELVNER---TEDESLRAKALVYLEALK 152 (165)
T ss_pred CCHHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHH
Confidence 9999999999887762 332233344555555554
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.85 E-value=0.0055 Score=45.15 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CC
Q 030489 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GR 135 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~ 135 (176)
...+...|.++.|+..++.+...-+ -|...+....+.+.+.++..+|.+.++.+.... |+.. |+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCC
Confidence 3344566777777777777776643 366666666777778888888888887776543 3322 77
Q ss_pred hHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+.+|+.++...... .+-++..|..|..+|...|+..+|
T Consensus 390 ~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 390 PQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred hHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHH
Confidence 77777777777644 244566788888888888887654
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.81 E-value=0.00081 Score=46.42 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=71.3
Q ss_pred hhhCChhHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CcChhhHHHHHHHHHhcCCH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPD--IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--KPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~ 78 (176)
.+.|++++|...|+.+.+.-+... ...+.-+..+|...|++++|...|+.+.+.-. +.....+..+..++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 346899999999999998743221 46778899999999999999999999986521 12344555566778899999
Q ss_pred HHHHHHHHHHHhcCC
Q 030489 79 DDATMMFSKMLEKGP 93 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~ 93 (176)
++|..+|+.+++..+
T Consensus 234 ~~A~~~~~~vi~~yP 248 (263)
T PRK10803 234 AKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHHHCc
Confidence 999999999988743
No 155
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.79 E-value=0.0004 Score=43.49 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=65.7
Q ss_pred hCChhHHHHHHHHHhhC--CC-Ccc------------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh
Q 030489 5 ECHLDAALKLFGQLTDR--GL-EPD------------------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~--~~-~~~------------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 63 (176)
.++.+.+.+.+.++... |. -++ ..+...++..+...|++++|+.++..+.... +.|..
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~ 97 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PYDEE 97 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHH
Confidence 45667777777776653 21 111 1234566677778999999999999998875 44888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCcHHHHH
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKML-----EKGPKANVVTYS 101 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 101 (176)
.|..+|.+|...|+...|.++|+.+. +.|+.|+..+-.
T Consensus 98 ~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 98 AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 99999999999999999999998875 468888876643
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00054 Score=47.26 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=76.1
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
.-..+.+++.+|+..|.+..+.... |...|..=..+|.+.|+++.|++-.+..+..+.. ...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3456788999999999999886422 6666777788999999999999999998887654 7889999999999999999
Q ss_pred HHHHHHHHHHHC
Q 030489 115 SAFDVYEEMCEN 126 (176)
Q Consensus 115 ~a~~~~~~m~~~ 126 (176)
+|.+.|++..+.
T Consensus 167 ~A~~aykKaLel 178 (304)
T KOG0553|consen 167 EAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHhhhcc
Confidence 999999887653
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.0025 Score=48.38 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHhC-CCCcChhhHHHHHHHHHhcCC
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--------LDEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~ 77 (176)
+.+.|.++|++..+.. |-....|..+..++..... +..+.+........ ....+...|..+.-.....|+
T Consensus 357 ~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 357 SLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 4678888888888773 2245555554444433221 22333333332221 123345667766666667788
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
+++|...+++....+ |+...|..+...+...|++++|.+.+++....+.
T Consensus 436 ~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 436 TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 899998888888775 4677888888888888999998888888765443
No 158
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0038 Score=45.33 Aligned_cols=164 Identities=14% Similarity=0.147 Sum_probs=107.5
Q ss_pred ChhHHHHHHHHHhh-CCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh-hHHHHHHHHHhcCCHHHHHHH
Q 030489 7 HLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 7 ~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~ 84 (176)
+...|..++-.+.. .-++-|++....+.+.+...|+.++|+..|++.... .|+.. ....-.-.+.+.|+.+....+
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 33344444433322 235667888888888888899998888888887654 23221 111122234567777777777
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCCCCC
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMP 153 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p 153 (176)
...+.... +.....|-.-........++..|+.+-++..+.+...... ++.++|.-.|+..... .|
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--AP 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--ch
Confidence 77776542 2244455555555566778888888888766543322222 8999999999988753 54
Q ss_pred -cHHHHHHHHHHhhcccCccccC
Q 030489 154 -DGLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 154 -~~~~~~~l~~~~~~~g~~~~A~ 175 (176)
+...|.-|+.+|...|++.||-
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHH
Confidence 4679999999999999998874
No 159
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.002 Score=47.48 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=74.1
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
++.+++.|..+|++.... +|.-...|...+.+=-..|+...|.++|++...- .|+...|.+.++.=.+..+++.|..
T Consensus 119 knk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred hhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 455666677777766654 2323445555555556667777777777666553 5677777777777677777777777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+++..+-. .|++.+|-.....=.++|+...+.++|+...
T Consensus 196 IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 196 IYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 77766653 3566666666666666666666666666543
No 160
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.78 E-value=0.0042 Score=49.80 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
+...+..+..+|-+.|+.+++..+|+++.+.. +-|+...|.+.-.|... ++++|.+++.+...
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 44566677777777777777777777777766 33666667666666666 77777666665543
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=97.77 E-value=0.00053 Score=43.40 Aligned_cols=88 Identities=11% Similarity=0.004 Sum_probs=74.1
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|+..|......+. -|+..+...-.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 35689999999999999876543 677788888889999999999999988776553 3666777788999999999999
Q ss_pred HHHHHHHHhc
Q 030489 82 TMMFSKMLEK 91 (176)
Q Consensus 82 ~~~~~~~~~~ 91 (176)
...|+...+.
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 9999998874
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.77 E-value=0.0032 Score=41.84 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHCCCCCcHH----HHHHHHHHhhcccCcc
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGL----LLSTLADYNLQSSGSQ 172 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~ 172 (176)
|.+..|..-++.+.+. -|++. ....++.++.+.|..+
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 6677777777777654 34433 4456666776666554
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.75 E-value=0.00032 Score=38.25 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 030489 36 GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 36 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
.|.+.+++++|+++++.+...+.. +...+.....++.+.|++++|.+.|+...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 455555556666555555554322 44444555555555555665555555555443
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.0036 Score=43.83 Aligned_cols=160 Identities=12% Similarity=0.099 Sum_probs=98.5
Q ss_pred hhhCChhHHHHHHHHHhh----CCCCcc--HHHHHHHHHHHHhC-CChhHHHHHHHHHHh----CCCCc-ChhhHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTD----RGLEPD--IITYNTIICGYCSL-NRLDEAVQLFEKLTC----VQLKP-NSITFTILID 70 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~----~~~~~-~~~~~~~ll~ 70 (176)
.+..++++|.+++++..+ .| .|+ ...+..+...|... |++++|++.|++... .+.+- -...+..+..
T Consensus 85 ~k~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 85 YKKGDPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 345588888888887654 34 333 45777888888888 899999999987653 23111 1344566778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-----CcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHH
Q 030489 71 AFCKEGRMDDATMMFSKMLEKGPK-----ANVV-TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~ 144 (176)
.+.+.|++++|.++|++....... ++.. .|-..+-++...||+..|...+++...............-+..+++
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 899999999999999998765332 2222 2333445666789999999999998765544444444444555555
Q ss_pred HHHHCCCCCcHHHHHHHHHHhhc
Q 030489 145 SMLRNGIMPDGLLLSTLADYNLQ 167 (176)
Q Consensus 145 ~m~~~g~~p~~~~~~~l~~~~~~ 167 (176)
-..+. |...|...+.-|-+
T Consensus 244 A~~~~----D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 244 AYEEG----DVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHTT-----CCCHHHHCHHHTT
T ss_pred HHHhC----CHHHHHHHHHHHcc
Confidence 55433 33445444444433
No 165
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0019 Score=44.08 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH----
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI---- 104 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 104 (176)
+.+.++..+.-.|.+.-....+++..+...+.++.....|.+...+.|+.+.|...|+...+..-..+..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456677777788888899999999988777788889999999999999999999999877654445555555544
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCCCCCcHHHHHHH
Q 030489 105 -DGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161 (176)
Q Consensus 105 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l 161 (176)
..|.-.+++..+...+.++...+...... |+...|++.++.|.+. .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34555678888888888776544332222 9999999999999876 4555544433
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.72 E-value=0.011 Score=46.67 Aligned_cols=115 Identities=19% Similarity=0.360 Sum_probs=83.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHH--HhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGY--CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
...+++.+|+.....+.+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3467888888888877765 2332 334444443 5888889998888777766555 88888888888899999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
|..+|+...+.. |+..-...+..+|.+.+++.+-.+.--+|
T Consensus 96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888763 56777778888888888776544444333
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.0062 Score=41.67 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF---TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
...+-.....+.+.|++++|++.|+.+......+ ...- -.+..++.+.++++.|...+++..+..+......|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333344444567788888888888877653222 2222 34456677888888888888888776555444455555
Q ss_pred HHHHHh--c---------------CC---HHHHHHHHHHHHHCCCCCCCC------------------------------
Q 030489 104 IDGYFK--S---------------QN---MKSAFDVYEEMCENNISPNIA------------------------------ 133 (176)
Q Consensus 104 ~~~~~~--~---------------g~---~~~a~~~~~~m~~~~~~~~~~------------------------------ 133 (176)
+.+.+. . .| ..+|+..|+++.+. -|++.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 554431 1 12 23455666666553 23333
Q ss_pred CChHHHHHHHHHHHHC--CCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 GRPTEAMQLYDSMLRN--GIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
|.+.-|..-++.+.+. +..........+..+|...|..++|
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 7777788888777743 1222344556777888887777665
No 168
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0047 Score=44.87 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
..+...+++++|.-.|+..+..-+ -+...|.-|+..|...|.+.+|.-+-+..
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 456778899999999998887643 48899999999999999998887766543
No 169
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.68 E-value=0.0052 Score=42.51 Aligned_cols=124 Identities=11% Similarity=0.066 Sum_probs=88.9
Q ss_pred CccHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC----------------CHHHHH
Q 030489 24 EPDIITYNTIICGYCSL-----NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG----------------RMDDAT 82 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 82 (176)
..|..+|-..+..+... +..+-.-..++.|.+.|+.-|..+|+.|++.+-+-. +-+.++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45778888888777543 567777778899999999999999999999875533 346689
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH-CCCCCCCC-----CC-hHHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK-SAFDVYEEMCE-NNISPNIA-----GR-PTEAMQLYDSML 147 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~m~~-~~~~~~~~-----~~-~~~a~~~~~~m~ 147 (176)
+++++|...|+-||..+-..|+.++++.+-.- +..++.--|.+ .+..|... ++ .+.|.--++.|.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfkn~np~p~pr~vp~dp~ElA~~aL~~M~ 216 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKFKNSNPYPDPRHVPGDPSELAGIALKMMS 216 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999988643 33333333432 22233222 33 445555555554
No 170
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0072 Score=41.05 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=96.8
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
-.|++++|.++++.+.+.+ |.|..++-.=+-..-..|+.-+|++-+...... +..|...|.-+...|...|++++|.-
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 3588999999999999886 557777777777777788888999888887765 56799999999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKS---QNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~ 128 (176)
-++++.-..+ .+...+..+.+.+.-. .+.+.+.+.|.+..+...
T Consensus 176 ClEE~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 176 CLEELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999987643 3666666666655443 467788888888776543
No 171
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0074 Score=43.12 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=104.8
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH-HHHHHHhcCCHHHHHHH
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI-LIDAFCKEGRMDDATMM 84 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~ 84 (176)
-++++.+..++.+..- +.-|...--.+..+++-.|.+.+|+++|-+.....++ |..+|.+ |.++|.+++.++-|+.+
T Consensus 373 ~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 3566666666666554 2212222236778888899999999999776655555 5566655 45788999999988877
Q ss_pred HHHHHhcCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-CChHHHHHHHHHHHHCCCCCc-HHHHHHH
Q 030489 85 FSKMLEKGPKANVVT-YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-GRPTEAMQLYDSMLRNGIMPD-GLLLSTL 161 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 161 (176)
+-.+. .+.+..+ ...+..-|.+.+++--|-+.|+.+...+..|..- |+--.+-.+|+.+....-.|- ..+...+
T Consensus 451 ~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEV 527 (557)
T KOG3785|consen 451 MLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACAGLFRQLANHKTDPIPISQMREV 527 (557)
T ss_pred HHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHHHHHHHHHcCCCCCCchhHHHHH
Confidence 65543 2223333 4445577888899998889998887766555544 777778888888874433332 3455666
Q ss_pred HHHhhcccC
Q 030489 162 ADYNLQSSG 170 (176)
Q Consensus 162 ~~~~~~~g~ 170 (176)
+..+...++
T Consensus 528 vhllr~~~n 536 (557)
T KOG3785|consen 528 VHLLRMKPN 536 (557)
T ss_pred HHHHHhCCC
Confidence 665555544
No 172
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.63 E-value=0.00099 Score=51.17 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=103.5
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-ChhhHHHHHHHHHhcCCHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a 81 (176)
.+.++++++.+.|+.-.+.+ +.-..+|..+-.+..+.+++..|.+.|..-..- .| +...||.+-.+|.+.+.-.+|
T Consensus 496 ~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred ccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHH
Confidence 34688999999998887764 447899999999999999999999999887754 44 457899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
...+.+..+.+.. +...|-..+-...+.|.+++|++.+.++...
T Consensus 573 ~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 573 FRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999988854 7778888888889999999999999988653
No 173
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0075 Score=45.57 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=83.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.++|++|+.+.+.-.. ...+..-+.-=..+..+.++.++|+..++-.. +.|..+...-...+.+.|++++|
T Consensus 56 lIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 56 LIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred hhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHH
Confidence 4567778888754433111 11111111122333447888888888887222 12333555555667888888888
Q ss_pred HHHHHHHHhcCC---------------------------CCcHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHC-----
Q 030489 82 TMMFSKMLEKGP---------------------------KANVVTYSCLI---DGYFKSQNMKSAFDVYEEMCEN----- 126 (176)
Q Consensus 82 ~~~~~~~~~~~~---------------------------~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~m~~~----- 126 (176)
..+|+.+.+.+. .....+|..+. ..++..|+|.+|+++++.....
T Consensus 130 ldiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l 209 (652)
T KOG2376|consen 130 LDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKL 209 (652)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhh
Confidence 888888854321 11123454443 3456789999999999887221
Q ss_pred ---CCCCCCC------------------CChHHHHHHHHHHHHCC
Q 030489 127 ---NISPNIA------------------GRPTEAMQLYDSMLRNG 150 (176)
Q Consensus 127 ---~~~~~~~------------------~~~~~a~~~~~~m~~~g 150 (176)
....... |+.++|.+++....+..
T Consensus 210 ~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 210 EDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 1110000 99999999999888664
No 174
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.59 E-value=0.013 Score=44.91 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=53.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-----------------C
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD---IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-----------------N 61 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----------------~ 61 (176)
|-+.|+++.|..+|++..+-..+-- ..+|..-..+=.+..+++.|+++.+......-.| +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 3457788888888888776643322 3455555555566677777777776654321110 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 030489 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 62 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 93 (176)
...|...++.--..|-++....+++.+.+..+
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 22334444444455667777777777766544
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.58 E-value=0.00076 Score=36.73 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=27.4
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 56 (176)
.+.+++++|+++++.+...+ |.+...|.....++.+.|++++|.+.++...+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555555555555555543 224455555555555555555555555555543
No 176
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.50 E-value=0.011 Score=46.07 Aligned_cols=121 Identities=16% Similarity=0.082 Sum_probs=97.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.++.++|..++.+..+. .+.....|......+...|.+++|.+.|......+.. ++...+++...+.+.|+..-|
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la 737 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLA 737 (799)
T ss_pred HHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchH
Confidence 34567777888787777665 2446778888888888999999999999887765322 456678888899999988888
Q ss_pred HH--HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 82 TM--MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 82 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.. ++.++.+.++. +...|..+-..+-+.|+.+.|-+.|....+
T Consensus 738 ~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 77 99999998765 899999999999999999999999987654
No 177
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.48 E-value=0.00055 Score=37.87 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-Cc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEK----GPK-AN-VVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
+++.+...|...|++++|++.|++..+. |.. |. ..+++.+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555544421 111 11 334555555666666666666665543
No 178
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.48 E-value=0.00048 Score=38.10 Aligned_cols=65 Identities=26% Similarity=0.417 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CC-CcC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QL-KPN-SITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
...+++.+...|...|++++|+..|++.... |- .|+ ..+++.+..++...|++++|.+.+++..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567899999999999999999999887643 21 122 56678888999999999999999988653
No 179
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.47 E-value=0.0013 Score=52.37 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
+...|..+|....+-. ..+...+..+.+.|++..+++.|..+.-..-+... ..-..-|.-.--.|.+.++..+|..-|
T Consensus 507 Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 3445666666665543 33556666777777777777777666322221100 000111222223355666777777777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHH
Q 030489 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSML 147 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~ 147 (176)
+...+..+. |...|..+.++|.+.|.+..|.++|.+.... .|... |.+++++..+..+.
T Consensus 586 QsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 586 QSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777766655 8899999999999999999999999887654 34443 88888888887776
No 180
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.013 Score=41.06 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=62.0
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHH-HHHHHhcCCHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL-IDAFCKEGRMDDA 81 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a 81 (176)
.+..++++|.+++..--++. +.+......|..+|....++..|-..|+++-.. .|-..-|..- ...+.+.+.+..|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHH
Confidence 56778899999988777764 337888889999999999999999999998765 4444444321 3445566677777
Q ss_pred HHHHHHHHh
Q 030489 82 TMMFSKMLE 90 (176)
Q Consensus 82 ~~~~~~~~~ 90 (176)
..+...|.+
T Consensus 98 LrV~~~~~D 106 (459)
T KOG4340|consen 98 LRVAFLLLD 106 (459)
T ss_pred HHHHHHhcC
Confidence 777766654
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.44 E-value=0.039 Score=43.88 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=66.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.|.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|+...+. .|+......+..+|.+.+.+.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999888887766544 8889999999999999999999999988765 56777778888888888877664
Q ss_pred HHHHHHH
Q 030489 82 TMMFSKM 88 (176)
Q Consensus 82 ~~~~~~~ 88 (176)
.+.--+|
T Consensus 130 Qkaa~~L 136 (932)
T KOG2053|consen 130 QKAALQL 136 (932)
T ss_pred HHHHHHH
Confidence 4443333
No 182
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.44 E-value=0.00088 Score=46.15 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=66.6
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCCh----------------hHHHHHHHHHHhCCCCcChhhHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL----------------DEAVQLFEKLTCVQLKPNSITFTIL 68 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------------~~a~~~~~~m~~~~~~~~~~~~~~l 68 (176)
.++++-....++.|.+.|+..|..+|+.|++.+=+..-. +=+++++++|...|+.||..+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 456677777888999999999999999999988654432 2478999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHH
Q 030489 69 IDAFCKEGRM-DDATMMFSKM 88 (176)
Q Consensus 69 l~~~~~~~~~-~~a~~~~~~~ 88 (176)
++++++.+-. .+...+.-.|
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHhccccccHHHHHHHHHhh
Confidence 9999998864 3333433333
No 183
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.41 E-value=0.011 Score=36.72 Aligned_cols=120 Identities=14% Similarity=0.224 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (176)
...|.. .....+.|++++|++.|+.+..+-. +-....--.|+.+|.+.+++++|...+++.++..+......|-..+
T Consensus 11 ~~ly~~-a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQE-AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 344444 4445589999999999999987621 1234555678889999999999999999999988776667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHCCCCCcH
Q 030489 105 DGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDG 155 (176)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 155 (176)
.+++.....+ ..+..+.... ...+....|..-|+++++. -|++
T Consensus 90 ~gL~~~~~~~---~~~~~~~~~d---rD~~~~~~A~~~f~~lv~~--yP~S 132 (142)
T PF13512_consen 90 RGLSYYEQDE---GSLQSFFRSD---RDPTPARQAFRDFEQLVRR--YPNS 132 (142)
T ss_pred HHHHHHHHhh---hHHhhhcccc---cCcHHHHHHHHHHHHHHHH--CcCC
Confidence 8877554433 2333332111 1115567788888888764 5554
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0062 Score=41.73 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=98.8
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHH-----HHHHhcCCHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI-----DAFCKEGRMD 79 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~~~~~ 79 (176)
.|.+.-...+++..++...+.++.....|++.-.+.|+.+.|...|++..+..-..|.-+++.++ ..|.-.+++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 34566677888888887767788999999999999999999999999888765556666666554 3455677888
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
.|...+.+....+.. ++...|.=.-+..-.|+...|++.++.|.+....+...
T Consensus 270 ~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 888889888877654 66666666666667899999999999998765544443
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.027 Score=40.14 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
.+.+.-+.-+...|....|.++-.+.. .|+..-|..-+.+++..++|++-.++-.. .-++..|-.++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 344555556666777666666654442 45777777777777777777665554321 12446677777777
Q ss_pred HhcCCHHHHHHHHHH
Q 030489 108 FKSQNMKSAFDVYEE 122 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~ 122 (176)
.+.|+..+|..+...
T Consensus 248 ~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK 262 (319)
T ss_pred HHCCCHHHHHHHHHh
Confidence 777777777766665
No 186
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.35 E-value=0.028 Score=40.18 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=85.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCc------------cHHH--HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEP------------DIIT--YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 67 (176)
+.+.|++++|..=|+...++...- .... ....+..+.-.|+...|+.....+.+.. +.|...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 467899999999999988774321 1111 2234555667888889999888888753 457777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
-..+|...|++..|+.=+....+.... ++.++-.+-..+...|+.+.++...++..+
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 788899999999988877777766544 555665666666666766666666666544
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.35 E-value=0.013 Score=43.30 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=57.6
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS----ITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788999999999999999999999998876 4553 35889999999999999999999999875
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.34 E-value=0.025 Score=43.11 Aligned_cols=134 Identities=14% Similarity=0.080 Sum_probs=88.1
Q ss_pred CCCccHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHhCCCCcCh-hhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 030489 22 GLEPDIITYNTIICGYCSLNR-----LDEAVQLFEKLTCVQLKPNS-ITFTILIDAFCKE--------GRMDDATMMFSK 87 (176)
Q Consensus 22 ~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~ 87 (176)
..+.+...|...+++.....+ ..+|..+|++..+. .|+- ..+..+..++... .+...+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 456688999999998654332 67999999998886 4543 3444433333221 123344444444
Q ss_pred HHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CChHHHHHHHHHHHHCCCCCcHH
Q 030489 88 MLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------GRPTEAMQLYDSMLRNGIMPDGL 156 (176)
Q Consensus 88 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~ 156 (176)
.... ..+.+...|..+.-.....|++++|...+++....+...... |+.++|.+.+++.... .|...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 3332 133355778877777777899999999999998876421111 9999999999999864 56655
Q ss_pred HHH
Q 030489 157 LLS 159 (176)
Q Consensus 157 ~~~ 159 (176)
||.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 554
No 189
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.018 Score=43.01 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CC
Q 030489 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GR 135 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~ 135 (176)
.+.+.+.|++..|...|.+++...+. |...|....-+|.+.|.+..|++=.+...+. .|+.. .+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHH
Confidence 44566777778888888777777644 7777777777788888777777766555544 22222 66
Q ss_pred hHHHHHHHHHHHHCCCCCcHHHHHHHHHHhh
Q 030489 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166 (176)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 166 (176)
++.|++.|++-.+. .|+..-+..-+.-|.
T Consensus 442 ydkAleay~eale~--dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 442 YDKALEAYQEALEL--DPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHhc--CchhHHHHHHHHHHH
Confidence 77777777776654 355554444443333
No 190
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.30 E-value=0.038 Score=45.03 Aligned_cols=145 Identities=10% Similarity=-0.001 Sum_probs=96.4
Q ss_pred hhhCChhHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCC-cChhhHHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK-PNSITFTILIDAFC 73 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~ 73 (176)
...|++++|...+++....-...+ ....+.+...+...|++++|...+.+.... |.. +...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 457899999999988765311112 234556667778899999999999887642 111 11234455667788
Q ss_pred hcCCHHHHHHHHHHHHhc----CCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCCC-----------
Q 030489 74 KEGRMDDATMMFSKMLEK----GPK--A-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI--SPNIA----------- 133 (176)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~----------- 133 (176)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+...... .+...
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876542 211 1 223345556677778999999999987654211 11111
Q ss_pred ---CChHHHHHHHHHHH
Q 030489 134 ---GRPTEAMQLYDSML 147 (176)
Q Consensus 134 ---~~~~~a~~~~~~m~ 147 (176)
|+.+.|.+.+++..
T Consensus 623 ~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 623 LARGDLDNARRYLNRLE 639 (903)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 89999998888775
No 191
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.28 E-value=0.046 Score=41.27 Aligned_cols=139 Identities=13% Similarity=0.115 Sum_probs=90.3
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
+.+...+.++++...-..--.-+|...|+.-.+..-...|..+|.+..+.+..+ ++...+++|..|+ .++.+-|.++|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 345555566665543222234567777777777777888888888888777666 6666777777665 45667778888
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC--------------CChHHHHHHHHHHH
Q 030489 86 SKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------------GRPTEAMQLYDSML 147 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------~~~~~a~~~~~~m~ 147 (176)
+--.+.- .-+..--...++-+...++-..+..+|++....++.++.. |+...++++-+++.
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 7544431 2133334556777777788888888888887765555544 66666666665554
No 192
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.26 E-value=0.029 Score=45.69 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=81.1
Q ss_pred hhhCChhHHHHHHHHHhhC----CC-CccHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCC--c-ChhhHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDR----GL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTC----VQLK--P-NSITFTILID 70 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~ 70 (176)
...|++++|...+.+.... |. .+...++..+...+...|++++|...+.+... .+.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4578999999988877643 21 11224556667778889999999998877554 2221 1 1223444556
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 71 AFCKEGRMDDATMMFSKMLEK----GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.+...|++++|...+++.... +.......+..+...+...|+++.|...+.+...
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677789999999888876542 2111234455566677888999999988887743
No 193
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.028 Score=40.68 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=90.0
Q ss_pred chhhCChhHHHHHHHHHhhC-----CCCc---------cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR-----GLEP---------DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 67 (176)
|.+.|++..|...|++.... +.++ -..++..+.-++.+.+++..|++..+.....+ ++|+-....
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyR 296 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYR 296 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHH
Confidence 56788999999988875533 1121 23456778888899999999999999888775 347777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK-SAFDVYEEMCE 125 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~m~~ 125 (176)
=-.++...|+++.|+..|+.+.+..+. |..+-+-|+.+-.+...+. ...++|..|..
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788899999999999999999987544 5556666666666655544 44778888854
No 194
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=97.22 E-value=0.018 Score=40.08 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.++..++..+...|+.+.+...++++....+- +...|..+|.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34566788888999999999999999998754 999999999999999999999999999865
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.21 E-value=0.015 Score=42.92 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV---VTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+...++.+..+|.+.|++++|...|++..+.++. +. .+|..+..+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677889999999999999999999999887654 33 46999999999999999999999998774
No 196
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.18 E-value=0.019 Score=43.93 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=117.7
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
...+++...+++.+.+.+. .+--..|.....-.+...|+.++|......-.+..+. +.+-|+.+.-.+....++++|+
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 3457778888888888773 3445566666666677889999999888777665444 7777888888888889999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHC
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~ 149 (176)
+.|......+.. |...|.-+--.-++.|+++.......+..+. .|... |+...|..+.+...+.
T Consensus 96 Kcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 96 KCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888755 8888888888888889999888888877664 23332 9999999999999854
Q ss_pred C-CCCcHHHHHHHH
Q 030489 150 G-IMPDGLLLSTLA 162 (176)
Q Consensus 150 g-~~p~~~~~~~l~ 162 (176)
. -.|+...|.-..
T Consensus 173 ~~~~~s~~~~e~se 186 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSE 186 (700)
T ss_pred hccCCCHHHHHHHH
Confidence 3 357777665443
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.04 Score=36.63 Aligned_cols=124 Identities=16% Similarity=0.264 Sum_probs=78.7
Q ss_pred chhhCChhHHHHHHHHHhhCCC--CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHH--HHH----
Q 030489 2 LIKECHLDAALKLFGQLTDRGL--EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID--AFC---- 73 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~---- 73 (176)
+.+.|++++|.+.|+.+...-+ +-.....-.+..++.+.|+++.|...+++..+.-..-....+...+. ++.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 3568999999999999987632 22456677889999999999999999999876522211111222222 211
Q ss_pred -------hcCCHHHHHHHHHHHHhcCCCCcHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 74 -------KEGRMDDATMMFSKMLEKGPKANVVTY-----------------SCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 74 -------~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
..+...+|...|+.+++.-+. +..+- -.+...|.+.|.+..|..-++.+.+.
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~-S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPN-SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 122345788888888866322 21111 12456788899999999999998874
No 198
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.07 E-value=0.026 Score=34.47 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---------------cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKMLE---------------KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
|..++..+|-++++.|+.+....+.+..-. ....|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999999876532 22468899999999999999999999999998754
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.97 E-value=0.034 Score=34.10 Aligned_cols=91 Identities=21% Similarity=0.173 Sum_probs=64.1
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHH---HHHHhcCCH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI---DAFCKEGRM 78 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll---~~~~~~~~~ 78 (176)
+...|+++.|++.|.+...-- +-....||.-..++.-.|+.++|++=+++..+-.-..+...+.+.+ ..|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456788888888888877653 4477888888888888888888888887776542222433333333 456777888
Q ss_pred HHHHHHHHHHHhcCC
Q 030489 79 DDATMMFSKMLEKGP 93 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~ 93 (176)
+.|..=|+...+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888887777664
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.94 E-value=0.0061 Score=29.63 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
++..+...|...|++++|.++|++..+..+. |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 3445555666666666666666666655433 44444433
No 201
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.91 E-value=0.041 Score=34.09 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (176)
...++..+.+.+.......+++.+...+. .+...++.++..|++.+. .+..+.+.. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 34566667777788888888888777763 577778888888876543 333444442 1 122333345555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC----CCCChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhc
Q 030489 110 SQNMKSAFDVYEEMCENNISPN----IAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167 (176)
Q Consensus 110 ~g~~~~a~~~~~~m~~~~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 167 (176)
.+.++++.-++.++........ ..++.+.|.+++.+- -++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 5555555555554421100000 004566666666541 255677777766654
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.90 E-value=0.07 Score=36.59 Aligned_cols=145 Identities=13% Similarity=0.139 Sum_probs=90.0
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHH---HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh--c--
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIIT---YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK--E-- 75 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~-- 75 (176)
.+.|++++|.+.|+.+...-+.+ ... .-.+..++.+.+++++|+..+++..+....-...-+...+.+.+. .
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 46799999999999998874332 222 245678889999999999999999876433222233333333221 1
Q ss_pred -------------CC---HHHHHHHHHHHHhcCCCCcHH-----H------------HHHHHHHHHhcCCHHHHHHHHHH
Q 030489 76 -------------GR---MDDATMMFSKMLEKGPKANVV-----T------------YSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 76 -------------~~---~~~a~~~~~~~~~~~~~~~~~-----~------------~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
.+ ...|.+.|+++++.-+. +.. . --.+...|.+.|.+..|..-++.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~ 200 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQ 200 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 12 34577788888765321 111 0 01244568889999999999999
Q ss_pred HHHCCCCCCCCCChHHHHHHHHHHH-HCCCC
Q 030489 123 MCENNISPNIAGRPTEAMQLYDSML-RNGIM 152 (176)
Q Consensus 123 m~~~~~~~~~~~~~~~a~~~~~~m~-~~g~~ 152 (176)
+.+. .......++|+.++.+.- ..|..
T Consensus 201 v~~~---Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 201 MLRD---YPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHH---CCCCchHHHHHHHHHHHHHHcCCh
Confidence 9873 222233456666555544 44443
No 203
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.024 Score=40.65 Aligned_cols=128 Identities=12% Similarity=0.196 Sum_probs=87.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHH-HHHHHHHhCCChhHHHHHHHHHHhCCCCcChhh-HHHHHHHHHhcCCHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYN-TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT-FTILIDAFCKEGRMD 79 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~ 79 (176)
++--|.+.+|+++|-++..-.++ |..+|. .|.++|.+.++++-|.+++-.+.. +.+..+ ...+.+-|.+.+++-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999776644434 667776 556778899999999888766543 223222 334457789999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~ 144 (176)
-|-+.|+.+...++ ++.-| .|+-..+..+|..+....-.|...+.+.++..+++
T Consensus 479 yaaKAFd~lE~lDP--~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr 532 (557)
T KOG3785|consen 479 YAAKAFDELEILDP--TPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLR 532 (557)
T ss_pred HHHHhhhHHHccCC--Ccccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHH
Confidence 99999999887754 44444 46666677788877766555555555555555443
No 204
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.067 Score=38.19 Aligned_cols=141 Identities=12% Similarity=0.022 Sum_probs=99.7
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC---CCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
.|++.+|-..|+++.+. .|.|...+...=++|...|+.+.....+++..-. +++.....-....-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 46777788888888876 4668899999999999999999888888876643 2222222333444566789999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------------CChHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------------GRPTEAMQLYDSM 146 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------~~~~~a~~~~~~m 146 (176)
++.-++..+.+.. |.-.-......+-..|++.++.+++.+-...--..+.. +.++.|+++|++=
T Consensus 195 Ek~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9999888877543 66666667777778889999988877643211100000 8899999999665
Q ss_pred H
Q 030489 147 L 147 (176)
Q Consensus 147 ~ 147 (176)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 4
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.048 Score=37.51 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcHHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSC 102 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 102 (176)
...|+.-+..+ +.|++..|.+.|....+... .-....+..|..++...|+++.|..+|..+.+.-.+ --+...-.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45777777755 77889999999988887632 223456777889999999999999999988865322 23467777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 103 LIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
|.....+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888889999999999999998764
No 206
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.79 E-value=0.1 Score=36.90 Aligned_cols=117 Identities=15% Similarity=0.323 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHhcCC-
Q 030489 43 LDEAVQLFEKLTCVQLKPNSITFTILIDAFCK--EG----RMDDATMMFSKMLEKGP---KANVVTYSCLIDGYFKSQN- 112 (176)
Q Consensus 43 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 112 (176)
+++.+.+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++..+ .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888888888888777666553333322 22 35568888999987643 3344555555444 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCCC----------------CChHHHHHHHHHHHHCCCCCcHHHHHHH
Q 030489 113 ---MKSAFDVYEEMCENNISPNIA----------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161 (176)
Q Consensus 113 ---~~~a~~~~~~m~~~~~~~~~~----------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l 161 (176)
.+.+..+|+.+.+.|...+.. ....++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 355667777777777766665 2256788888888888888777766544
No 207
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.77 E-value=0.00012 Score=45.73 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=86.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (176)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 456677778888888889988887766667888889999999998878887777621 1133456778888888
Q ss_pred CHHHHHHHHHHHHHCCC--CC-CCCCChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCc
Q 030489 112 NMKSAFDVYEEMCENNI--SP-NIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGS 171 (176)
Q Consensus 112 ~~~~a~~~~~~m~~~~~--~~-~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 171 (176)
.++++.-++.++....- .. ...++++.|.+++.+ .++...|..+++.|...++.
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 88888888887643211 11 111555555533332 24578888888888777654
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.77 E-value=0.072 Score=34.84 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcHHHHH
Q 030489 23 LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-ANVVTYS 101 (176)
Q Consensus 23 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 101 (176)
+-|+...--.|..+..+.|+..+|...|.+...--+.-|....-.+.++....+++..|...++.+.+..+. .+..+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 356666666777777777888788777777665444556666667777777777777777777777765421 1223444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 102 CLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.+...|...|.+..|..-|+...+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 556677777777777777777655
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.74 E-value=0.13 Score=37.42 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=88.5
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHh---------CCChhHHHHHHHHHHhCCCCcChhhH---HHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS---------LNRLDEAVQLFEKLTCVQLKPNSITF---TILIDAF 72 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~ 72 (176)
.|+.++|++++..+......+++.+|..+.+.|-. ...+++|+..|.+--+. .||..+= .+|+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 78999999999986655567788888887777632 22367888888765543 2332221 1222222
Q ss_pred HhcC-CHHHHHHHH---HHHH-hcC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHH
Q 030489 73 CKEG-RMDDATMMF---SKML-EKG---PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144 (176)
Q Consensus 73 ~~~~-~~~~a~~~~---~~~~-~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~ 144 (176)
+... .-.+..++- ..+. +.| ...+---+..+++++.-.|++++|.+..++|.....+.+..+..-+-+.++.
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~ 352 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIR 352 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHH
Confidence 2211 111222222 2222 222 2334555678899999999999999999999887655555566666677777
Q ss_pred HHHHC
Q 030489 145 SMLRN 149 (176)
Q Consensus 145 ~m~~~ 149 (176)
+....
T Consensus 353 ~~~~~ 357 (374)
T PF13281_consen 353 HFRKR 357 (374)
T ss_pred HHhcC
Confidence 77643
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.72 E-value=0.061 Score=33.44 Aligned_cols=72 Identities=11% Similarity=0.222 Sum_probs=54.1
Q ss_pred hhhCChhHHHHHHHHHhhCCC--CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh
Q 030489 3 IKECHLDAALKLFGQLTDRGL--EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 74 (176)
.+.|+++.|.+.|+.+..+=+ +-...+--.++.+|.+.+++++|+..+++..+....--..-|-..+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 468999999999999998721 224566778999999999999999999998886543333445555555543
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.11 Score=35.86 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCCC-------
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIA------- 133 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~------- 133 (176)
.|+.-+.. .+.|++..|.+.|...++..+. .....+--|.+++...|+++.|..+|..+.+.-. .|...
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45544443 3455577777777777765321 1233455567777777777777777777655322 22221
Q ss_pred ------CChHHHHHHHHHHHHC
Q 030489 134 ------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 134 ------~~~~~a~~~~~~m~~~ 149 (176)
|+.++|-..|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777754
No 212
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.70 E-value=0.014 Score=45.79 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=72.2
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.++|.+|+.+++.+..+. .-..-|..+...|+..|+++.|.++|-+. ..++..|..|.+.|+++.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 45678899999999887763 33455677888899999999998888542 24667788889999998888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVY 120 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 120 (176)
++-++.. |+...+..|-.-..-+-++|++.+|.+++
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 8776653 23334445555555555555555555444
No 213
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.15 Score=41.71 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
.+.+|..+..+-.+.|...+|++-|-+. -|+..|.-+++...+.|.+++-.+++...++..-.|.+. +.|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4567888888888888888887776442 267788889999999999999888888777765555544 57888
Q ss_pred HHHhcCCHHHHHHHH
Q 030489 106 GYFKSQNMKSAFDVY 120 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~ 120 (176)
+|++.++..+..+++
T Consensus 1175 AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHhchHHHHHHHh
Confidence 888888887766555
No 214
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.032 Score=45.31 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
|+..|..+++...+.|.|++-.+++...++..-.|.+. +.|+-+|++.+++.+.+++. .-|+......+-+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGD 1202 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhH
Confidence 77889999999999999999999998777765555544 57899999999988766554 2356777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCC---CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 106 GYFKSQNMKSAFDVYEEMCENNISPNIA---GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
-|...+.++.|.-+|.....-..-.... |++..|...-++. -+..||..+-.+|...+.+..|
T Consensus 1203 rcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH
Confidence 7778888888777776543211000000 4444444333332 2445666666666655554443
No 215
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.026 Score=39.74 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
++++++.++..-++.|+-||..+++.+|+.+.+.+++.+|.++...|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555444
No 216
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.60 E-value=0.073 Score=37.09 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE-----KGPKANVVTYS 101 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 101 (176)
..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456778888889999999999999998875 34888999999999999999999999998875 68888888887
Q ss_pred HHHHH
Q 030489 102 CLIDG 106 (176)
Q Consensus 102 ~l~~~ 106 (176)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77666
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.57 E-value=0.1 Score=39.43 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=83.2
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHH-HHHHHHHhCCChhHHHHHHHHHHhC--CC-CcChhhHHHHHHHHHhcCCHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYN-TIICGYCSLNRLDEAVQLFEKLTCV--QL-KPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~--~~-~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
....+.|.++++.+.++ -|+...|. .-.+.+...|+.++|++.|+..... .. ......+--+.-++.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45678899999999887 56666665 4456677899999999999975532 11 1122333445666788999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLID-GYFKSQNM-------KSAFDVYEEMCE 125 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~m~~ 125 (176)
|.+.|..+.+.+- .+..+|..+.- ++...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999998643 35555555543 44556777 888889888743
No 218
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.1 Score=33.74 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=59.7
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccH-HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh-hHHHHHHH--HHhcCCH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDI-ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDA--FCKEGRM 78 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~--~~~~~~~ 78 (176)
.+.|..++|+.-|..+.+.|...-+ -.--.......+.|+...|...|.+.-.....|-+. -...|=.+ +...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3455666666666666655433211 112233334455666666666666655432222211 11111111 2445556
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+....-.+.+...+-+.....--.|--+--+.|++.+|.+.|.++.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66665555555444333344444454555566666666666666554
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.15 Score=35.62 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=72.4
Q ss_pred CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCCC--
Q 030489 59 KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ---NMKSAFDVYEEMCENNISPNIA-- 133 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~-- 133 (176)
+-|...|-.|-.+|...|+...|..-|.+..+...+ +...+..+..++.... .-.++..+|+++...+......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 448889999999999999999999999999987544 7888888877765543 3568899999988754322222
Q ss_pred ---------CChHHHHHHHHHHHHC
Q 030489 134 ---------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 134 ---------~~~~~a~~~~~~m~~~ 149 (176)
|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 9999999999999976
No 220
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.54 E-value=0.013 Score=45.96 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=68.8
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
..|+++.|..-|-+.. .....+.+-.....|.+|+.+++.++.+.. -...|..+.+.|...|+++.|.+
T Consensus 718 ~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHH
Confidence 3456666665553322 223456667778889999988888776532 33456677788888899988888
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
+|-+. ..++-.|..|.+.|+|+.|.++-++.
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHh
Confidence 88542 24556778888889998888877654
No 221
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.54 E-value=0.041 Score=43.79 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=36.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 55 (176)
|+.-|+.+.|.+-.+.+. +..+|..+.++|.+.++++-|.-.+-.|..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 455678888877766654 567899999999999998887766665543
No 222
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.16 Score=38.22 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=73.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
...+.+.|++..|+..|.++.... +-|...|..-.-+|.+.|.+..|..=.+.-++.++ +....|..=..++.-..+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHH
Confidence 556778899999999999998886 44788899999999999999999888777777753 3566666666677777789
Q ss_pred HHHHHHHHHHHHCC
Q 030489 114 KSAFDVYEEMCENN 127 (176)
Q Consensus 114 ~~a~~~~~~m~~~~ 127 (176)
++|++.|.+-.+.+
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998876654
No 223
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=96.45 E-value=0.11 Score=36.29 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhh-CCCCccHHHHHHHHHHHHh-CCC-hhHHHHHHHHHH-hCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 8 LDAALKLFGQLTD-RGLEPDIITYNTIICGYCS-LNR-LDEAVQLFEKLT-CVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 8 ~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~~~-~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+.+|+.+|+...- ..+-.|..+...+++.... .+. ...--++.+.+. ..+..++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666663322 2345577777777777765 222 222222222232 23456788888888888999999998888
Q ss_pred HHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 030489 84 MFSKMLEK-GPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
+++..... +..-|...|..+|+.-.+.|+..-...+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 88877754 566688889999999999988876555554
No 224
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.45 E-value=0.25 Score=38.96 Aligned_cols=41 Identities=15% Similarity=-0.069 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
++.+.|++..++..+-+-.-+...+..+.-.+...++..+|
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 77788888887777665555666777666666666666554
No 225
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.39 E-value=0.064 Score=43.44 Aligned_cols=121 Identities=16% Similarity=0.048 Sum_probs=63.1
Q ss_pred chhhCChhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
|++...++.|..+.-..-+... ..-...|....-.|.+.+++.+++.-|+...+..+. |...|..+..+|.++|++..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceeh
Confidence 3455566666665222111110 001222334444556666677777766666655433 66666777777777777777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
|.++|.+.....+. +...--...-.-+..|++.+++..+..+.
T Consensus 615 AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 615 ALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777666654322 22221122223345566666666666553
No 226
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.38 E-value=0.14 Score=33.52 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=35.7
Q ss_pred CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 59 KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.|++.--..|..+....|+..+|...|++...--+..|....-.+..+....+++..|...++.+.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 3444444455555555555555555555554433444555555555555555555555555555544
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.36 E-value=0.18 Score=34.52 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=23.8
Q ss_pred hCCChhHHHHHHHHHHhCCC--CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 39 SLNRLDEAVQLFEKLTCVQL--KPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 39 ~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
+.|++++|...|+.+..+.. +-...+--.++-++.+.++++.|....++..+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45555555555555543311 112222233334445555555555555555443
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.33 E-value=0.16 Score=36.28 Aligned_cols=52 Identities=8% Similarity=0.046 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
+.+..+.-+...|+...|.++-.+.. .|+..-|-.-+.+|+..++|++-.++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~f 230 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKF 230 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33344444455555555555444432 23555555555555555555554443
No 229
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.26 E-value=0.36 Score=37.62 Aligned_cols=84 Identities=8% Similarity=0.114 Sum_probs=41.2
Q ss_pred HHhCCChhHHHHHHHHHHhC-CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 030489 37 YCSLNRLDEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115 (176)
Q Consensus 37 ~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 115 (176)
..++|+.......|+..... .+......|...+......+-++-+..+++...+. ++..-+-.+..+++.+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 33444444444444443322 22223334444555555555556666666655543 22234455555566666666
Q ss_pred HHHHHHHHH
Q 030489 116 AFDVYEEMC 124 (176)
Q Consensus 116 a~~~~~~m~ 124 (176)
|-+.+....
T Consensus 188 aa~~la~vl 196 (835)
T KOG2047|consen 188 AAQRLATVL 196 (835)
T ss_pred HHHHHHHhc
Confidence 666555543
No 230
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.057 Score=38.13 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=63.1
Q ss_pred hCChhHHHHHHHHHhhCC---CCc--cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH
Q 030489 5 ECHLDAALKLFGQLTDRG---LEP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 79 (176)
..++++++.++-.++.+- ..| +.++|-.++.-| +.++++.++..-.+.|+-||..+++.+|+.+.+.+++.
T Consensus 77 ~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~ 152 (418)
T KOG4570|consen 77 REEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYK 152 (418)
T ss_pred ccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHH
Confidence 467788888877776541 122 344444444333 57799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 030489 80 DATMMFSKMLEK 91 (176)
Q Consensus 80 ~a~~~~~~~~~~ 91 (176)
.|-.+.-.|...
T Consensus 153 ~aa~vvt~~~~q 164 (418)
T KOG4570|consen 153 DAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHHHH
Confidence 998888777644
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.18 E-value=0.027 Score=27.29 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL 68 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 68 (176)
.+|..+..+|...|++++|+++|++..+.... |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 46778888999999999999999998886422 44444433
No 232
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.14 E-value=0.39 Score=36.21 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCC-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLK-PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANVVTYSCLIDGYF 108 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 108 (176)
..+..++.+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+.-+... +.-...|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 35666677899999999999999865322 2345677899999999999999999998765432 223455777665444
Q ss_pred hcCC
Q 030489 109 KSQN 112 (176)
Q Consensus 109 ~~g~ 112 (176)
..++
T Consensus 343 av~d 346 (539)
T PF04184_consen 343 AVGD 346 (539)
T ss_pred hhcc
Confidence 4443
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.13 E-value=0.14 Score=38.42 Aligned_cols=98 Identities=14% Similarity=0.172 Sum_probs=63.4
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+.|+++.|.++.++ ..+...|..|.....+.|+++-|++.|.+.. -|..|+-.|...|+.++..+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHH
Confidence 34555555544322 2367788888888888888888888886643 26777777788888877777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
+.+.....|- +|....++...|+.++..+++.+
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7766665542 45556666677777777777654
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.10 E-value=0.022 Score=26.26 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+|+.|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888743
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.13 Score=37.39 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=76.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHhC-----CCC---------cChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHH
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCV-----QLK---------PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (176)
-+.|.+.|++..|..-|++.... +.. .-...+..|.-+|.+.+++.+|++.-......+. +|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhH
Confidence 45688999999999988775432 111 1234567788889999999999999999998865 48888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
.-.=-.+|...|+++.|+..|+.+.+. .|+..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nk 325 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL--EPSNK 325 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcH
Confidence 888889999999999999999999874 44444
No 236
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.06 E-value=0.022 Score=26.29 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEK 52 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~ 52 (176)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555554
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.04 E-value=0.39 Score=35.90 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHH-HHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT-YSCLID 105 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 105 (176)
-+|...|++..+..-++.|..+|-+..+.| +.+++..++++|..++ .|+..-|..+|+--...- ||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 456666666666666777777777777776 4566666777776554 455666677776544332 23322 344555
Q ss_pred HHHhcCCHHHHHHHHHH
Q 030489 106 GYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~ 122 (176)
.+...++-..|..+|+.
T Consensus 475 fLi~inde~naraLFet 491 (660)
T COG5107 475 FLIRINDEENARALFET 491 (660)
T ss_pred HHHHhCcHHHHHHHHHH
Confidence 66667777777777763
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.93 E-value=0.19 Score=30.92 Aligned_cols=121 Identities=17% Similarity=0.340 Sum_probs=72.2
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CC----------------CcChhhHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QL----------------KPNSITFT 66 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~----------------~~~~~~~~ 66 (176)
-.|..++..++..+...+. +..-+|=++.-....-+=+-..++++..-+. .+ ..+...+.
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD 90 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVD 90 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHH
Confidence 3677888888888877642 3333333333333333334444444433221 00 11334456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
..++...+.|.-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 6678888889999989999888763 456888888999999999999999999999988775
No 239
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.89 E-value=0.24 Score=31.80 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=73.6
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 11 ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 11 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
-.++...+.+.+++|+...+..+++.+.+.|++... .++.+.++-+|.......+-.+.. ....+.++--+|..
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 345666777889999999999999999999987665 555567777777766655544433 34455555555543
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 91 KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
+ -...+..+++.+...|++-+|+++.+..
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 2 1125667888899999999999998875
No 240
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.88 E-value=0.013 Score=36.48 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=56.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.+.++....+++.+...+...+....+.++..|++.++.++.+++++.. +..-...++..|.+.|.++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchHHHH
Confidence 3456778888889999988776678999999999999999888888888721 112234556666666666666
Q ss_pred HHHHHHHH
Q 030489 82 TMMFSKML 89 (176)
Q Consensus 82 ~~~~~~~~ 89 (176)
.-++..+.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66665543
No 241
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.85 E-value=0.27 Score=31.99 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCKEGRMDDATMMFSKMLEK---GPKANVVTYS 101 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 101 (176)
...+..+...|.+.|+.++|++.|.++......+. ...+-.+|......+++..+.....+.... +.+++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46788999999999999999999999887644433 455667788888899999888887766532 2222222211
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHH
Q 030489 102 CLIDG--YFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 102 ~l~~~--~~~~g~~~~a~~~~~~m 123 (176)
....+ +...+++..|-+.|-+.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 22222 23457788877777654
No 242
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.79 E-value=0.43 Score=33.84 Aligned_cols=125 Identities=11% Similarity=0.224 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHh--CC----ChhHHHHHHHHHHhCCC---CcChhhHHHHHHHHHhcCC
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCS--LN----RLDEAVQLFEKLTCVQL---KPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~ 77 (176)
.+++..++++.|.+.|+..+..+|-+....... .. ...++..+|+.|++... .++..++..|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 356778899999999998888777654443333 22 25688999999998743 2344555555544 3343
Q ss_pred ----HHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCCC
Q 030489 78 ----MDDATMMFSKMLEKGPKANVV--TYSCLIDGYFKSQN--MKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 78 ----~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~ 133 (176)
.+.++..|+.+.+.|+..+-. ....++...-...+ ...+.++++.+.+.|+++...
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~ 218 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM 218 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence 356778888888878765433 23333333322222 447888999999999887766
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.45 Score=33.39 Aligned_cols=125 Identities=10% Similarity=0.073 Sum_probs=67.0
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
...|++..|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+........
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3456677777777766655322 455555677777777777777777766654321112222122233333333333333
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 130 (176)
.+-+..-.. +. |...-..+...+...|+.+.|.+.+-.+...+...
T Consensus 224 ~l~~~~aad-Pd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 224 DLQRRLAAD-PD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 333332221 22 55566666777777777777777766665544333
No 244
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.67 E-value=0.028 Score=25.65 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=21.4
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 117 (176)
|++.++..+. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444555444 7777777777777777777764
No 245
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.56 E-value=0.29 Score=30.21 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=58.9
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
.+|++......+-.+- .+...+...++.....|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+
T Consensus 68 ~C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp G-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 4555666666654322 25566778889999999999999999998763 36788888899999999999999999
Q ss_pred HHHHHHhcCCC
Q 030489 84 MFSKMLEKGPK 94 (176)
Q Consensus 84 ~~~~~~~~~~~ 94 (176)
++.+.-+.|.+
T Consensus 142 ll~~ACekG~k 152 (161)
T PF09205_consen 142 LLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHHhchH
Confidence 99999888764
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.54 E-value=0.021 Score=26.03 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHhCCChhHHH
Q 030489 15 FGQLTDRGLEPDIITYNTIICGYCSLNRLDEAV 47 (176)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 47 (176)
|++.++.. |-+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444443 336777888888888888877775
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.52 E-value=0.3 Score=30.19 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=71.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.+.......+++.+...+ +.+...++.++..|++.. ..+.++.+.. .++......+++.|.+.+.++++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 18 EKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHH
Confidence 34578889999999998887 468889999999999764 4455555542 124444566888888888888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKS-QNMKSAFDVYEE 122 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 122 (176)
-++..+.. ...+ +..+... ++++.|.+++.+
T Consensus 90 ~l~~k~~~-----~~~A----l~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 90 ELYKKDGN-----FKDA----IVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHhhcC-----HHHH----HHHHHHcccCHHHHHHHHHh
Confidence 88877632 2222 3333333 778888777765
No 248
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.45 E-value=0.83 Score=34.82 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=96.2
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
+.|....-+++..++.+-++.-++.+..+|...| -+-..|..++.+|... ..++-..+|+++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4567777888999999999999999999998875 4677888899999888 667778889988888765 55555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------------CChHHHHHHHHHHH-HCCCCCcHHHHHHHHHHhhc
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIA---------------GRPTEAMQLYDSML-RNGIMPDGLLLSTLADYNLQ 167 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------~~~~~a~~~~~~m~-~~g~~p~~~~~~~l~~~~~~ 167 (176)
..-|-+ ++..++..+|.....+-++.... .+.+..+.+..++. ..|...-...+.-+..-|..
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 555544 77777777887776543331111 45555555555554 33333333444444455555
Q ss_pred ccCccc
Q 030489 168 SSGSQE 173 (176)
Q Consensus 168 ~g~~~~ 173 (176)
..++.+
T Consensus 218 ~eN~~e 223 (711)
T COG1747 218 NENWTE 223 (711)
T ss_pred ccCHHH
Confidence 554444
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.45 E-value=0.31 Score=31.68 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--CC-----
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN--IA----- 133 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~----- 133 (176)
..+..+...|.+.|+.+.|.+.|.++.+....+ -...+-.+|......++|..+.....+....-.... ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 557788999999999999999999998765443 344567788999999999999999887754322211 11
Q ss_pred ----------CChHHHHHHHHHHH
Q 030489 134 ----------GRPTEAMQLYDSML 147 (176)
Q Consensus 134 ----------~~~~~a~~~~~~m~ 147 (176)
+++..|-++|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 88888888887665
No 250
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.42 E-value=0.37 Score=31.91 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=61.3
Q ss_pred HhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE---KGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 38 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
...-.-+.|.+.|-.+...+..-++.....|...|. ..+.+++++++-...+ .+-.+|+..+..|...|.+.|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344345778888989988877767777776666666 6788899999887764 333678999999999999999999
Q ss_pred HHH
Q 030489 115 SAF 117 (176)
Q Consensus 115 ~a~ 117 (176)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.40 E-value=0.74 Score=34.53 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=88.5
Q ss_pred CChhHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhH-HHHHHHHHhcCCHHHHHH
Q 030489 6 CHLDAALKLFGQLTDRG-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF-TILIDAFCKEGRMDDATM 83 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~ 83 (176)
.-++.|..+|-+..+.| +.+++..++++|..+ ..|+..-|..+|+.=... -||...| +-.+..+...++-+.|..
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 34678999999999988 577888899999866 567888899999754333 3455554 566778889999999999
Q ss_pred HHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+|+.-+.. +.. -...|..+|+-=...|+...+..+-+.|..
T Consensus 488 LFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 488 LFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 99965533 222 367899999999999999888777776654
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.39 E-value=0.33 Score=29.91 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=68.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH---HHHHHhc
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL---IDGYFKS 110 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~ 110 (176)
.-+.+..|+++.|++.|.+....- +-....||.-..++.-.|+.++|.+=+++..+..-.......... -..|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 345778899999999998877653 347788999999999999999999888887764333243333333 3467778
Q ss_pred CCHHHHHHHHHHHHHCC
Q 030489 111 QNMKSAFDVYEEMCENN 127 (176)
Q Consensus 111 g~~~~a~~~~~~m~~~~ 127 (176)
|+-+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888776654
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.13 Score=40.88 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=52.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
..+.+.+.|++++|.+.|-+-... +.| ..++.-|....+...--.+++.+.+.|.. +...-+.|+.+|.+.++
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 334445788888888877664432 111 22445555555666666777777777765 67777777778877777
Q ss_pred HHHHHHHHHH
Q 030489 113 MKSAFDVYEE 122 (176)
Q Consensus 113 ~~~a~~~~~~ 122 (176)
.++-.++.+.
T Consensus 447 ~~kL~efI~~ 456 (933)
T KOG2114|consen 447 VEKLTEFISK 456 (933)
T ss_pred hHHHHHHHhc
Confidence 6665555443
No 254
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=95.25 E-value=0.61 Score=32.57 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (176)
...=|.+++..++|.+++...-+.-+.--+......-.-|-.|.|.+++..+.++-..-.+..-.-+...|..+.+.|..
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34567889999999999887765544322233445555677789999999999888776654333455668888887766
Q ss_pred -----cCCHHHHHHHH
Q 030489 110 -----SQNMKSAFDVY 120 (176)
Q Consensus 110 -----~g~~~~a~~~~ 120 (176)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 48888888776
No 255
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.94 E-value=0.38 Score=28.08 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 43 LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 43 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
.-+..+-++.+......|++....+.+.+|.+.+++.-|..+|+-++..- .+....|..++.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 34666677777777888888888888888888888888888888877442 222335655544
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.90 E-value=0.86 Score=31.96 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=93.8
Q ss_pred hhhCChhHHHHHHHHHhhCC--CCccH------HHHHHHHHHHHhCC-ChhHHHHHHHHHHhC--------CCCcCh---
Q 030489 3 IKECHLDAALKLFGQLTDRG--LEPDI------ITYNTIICGYCSLN-RLDEAVQLFEKLTCV--------QLKPNS--- 62 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~~--- 62 (176)
.+.|+++.|..++.+....- ..|+. ..|+.-...+ +.+ +++.|...+++.... ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 47899999999999887532 23322 2344444444 445 888887777654322 122332
Q ss_pred --hhHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----
Q 030489 63 --ITFTILIDAFCKEGRMD---DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---- 133 (176)
Q Consensus 63 --~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---- 133 (176)
.+...++.+|...+..+ +|..+++.+...... .+.++-.-++.+.+.++.+.+.+++.+|...-..+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 45567778888777654 566677777554332 45566666777777999999999999998753323222
Q ss_pred ---------CChHHHHHHHHHHHHCCCCCcH
Q 030489 134 ---------GRPTEAMQLYDSMLRNGIMPDG 155 (176)
Q Consensus 134 ---------~~~~~a~~~~~~m~~~g~~p~~ 155 (176)
.....+...++.+....+.|+.
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4445566666666644444444
No 257
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.83 E-value=0.91 Score=31.89 Aligned_cols=98 Identities=9% Similarity=0.026 Sum_probs=73.3
Q ss_pred HHHHHHHHHh-hCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCcChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 10 AALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGRMDDATMMFSK 87 (176)
Q Consensus 10 ~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 87 (176)
.-.++.+.+. +.+-.++..+...++..+++.++|.+-.+++..-... +...|...|..+|+...+.|+..-..++.++
T Consensus 184 alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 184 ALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3345555554 3356788999999999999999999999999887765 6677999999999999999999887777654
Q ss_pred -----HHhcCCCCcHHHHHHHHHHH
Q 030489 88 -----MLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 88 -----~~~~~~~~~~~~~~~l~~~~ 107 (176)
+++.++..+...-..+-+.+
T Consensus 264 GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 264 GHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred CCeEEeeecCCcCCHHHHHHHHHHH
Confidence 33455565555554444443
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.72 E-value=0.89 Score=31.29 Aligned_cols=123 Identities=15% Similarity=0.252 Sum_probs=80.6
Q ss_pred hhhCChhHHHHHHHHHhhCCC--CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCcChhhHHHHHHHHHh---c-
Q 030489 3 IKECHLDAALKLFGQLTDRGL--EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ-LKPNSITFTILIDAFCK---E- 75 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~---~- 75 (176)
.+.|++++|.+.|+.+..+.+ +-...+.-.++-++.+.++++.|+...++..+.. -.||. -|-.-|.+.+. .
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 468999999999999987632 2246677778888899999999999999887653 33333 33333333332 2
Q ss_pred ---CCHH---HHHHHHHHHHhc----CCCCcHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 76 ---GRMD---DATMMFSKMLEK----GPKANVVTY------------SCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 76 ---~~~~---~a~~~~~~~~~~----~~~~~~~~~------------~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+.. .|..-|+++++. ...||...- ..+..-|.+.|.+..|..-+++|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 2333 344455555543 122222211 22456788899999999999999875
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.71 E-value=1.4 Score=33.50 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhC-CCCcC-----hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcHHH
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPN-----SITFTILIDAFCK----EGRMDDATMMFSKMLEKGPKANVVT 99 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (176)
+..++...+-.|+-+.+++.+.+-.+. ++.-. .-+|+..+..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 345666667789999999998876554 33322 2334444444433 45688899999999876 356666
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------------CChHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 030489 100 YSCL-IDGYFKSQNMKSAFDVYEEMCENNISPNIA---------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLA 162 (176)
Q Consensus 100 ~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 162 (176)
|... -..+...|++++|++.|+............ .++++|.+.|.++.+.. .-+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 6554 456677899999999999765322111111 99999999999999642 22444554443
No 260
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.69 E-value=0.13 Score=24.10 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLT 54 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~ 54 (176)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555555555555555443
No 261
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.66 E-value=1.2 Score=32.35 Aligned_cols=165 Identities=15% Similarity=0.199 Sum_probs=105.4
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH-HHHHHHhcCCHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI-LIDAFCKEGRMDDA 81 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a 81 (176)
.-.|++.+|+.-|...++-+ +.+-.++..-...|.-.|+-.-|+.=+....+. +||-..-.. --..+.++|.+++|
T Consensus 49 la~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHH
Confidence 44678888888888877653 224555666667788888888888888877764 566332221 12456789999999
Q ss_pred HHHHHHHHhcCCCCc--HH----------HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------C
Q 030489 82 TMMFSKMLEKGPKAN--VV----------TY--SCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------G 134 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~--~~----------~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~ 134 (176)
..=|+.+.+....-. .. .| ...+..+.-.|+...|+.....+.+ +.|+.. |
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcC
Confidence 999999988754211 11 11 1234445567888888888888876 355554 7
Q ss_pred ChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCccc
Q 030489 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQE 173 (176)
Q Consensus 135 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 173 (176)
++..|+.=++...+.. .-+..++-.+-..+...|+.+.
T Consensus 204 e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 7777777666655432 2234455555555556665543
No 262
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.66 E-value=0.79 Score=30.40 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC---CCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
+.|++.|-.+...+.--++.....|...| -..+.+++++++....+. +-.+|+..+.+|.+.+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666666665443444444444444 356677777777665542 33567777777777777777777653
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.56 E-value=1.3 Score=32.48 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=11.1
Q ss_pred CChHHHHHHHHHHHHC
Q 030489 134 GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~ 149 (176)
|+.++|.+..++|...
T Consensus 319 ~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 319 GDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 7777777777777644
No 264
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.42 E-value=0.18 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
..+++.|...|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3567788888888888888888887764
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.41 E-value=1.7 Score=33.06 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 66 TILIDAFCKEGRMDDATMMFSKMLEKGPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
..+..++.+.|+.++|.+.|++|.+.... -...+...|++++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 45667778899999999999999865432 245678889999999999999999998853
No 266
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=0.48 Score=37.45 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=63.1
Q ss_pred HHHHHHHHh-hCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 11 ALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 11 a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
-+++.+.+. +.|..-..-+.+--+.-+...|+..+|.++-.+.+ .||-..|-.=+.+++..+++++-+++-+..+
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 344444443 23434445555555666667777777776665554 4677777777777777777766555433322
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 90 EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
++.-|.-.+.+|.+.|+.++|.+.+-+.
T Consensus 743 ------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 743 ------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred ------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 3456666777777777777777777654
No 267
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.03 E-value=0.45 Score=27.52 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 42 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
+.-++.+-++.+......|++....+.+++|.+.+++.-|..+|+-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445566666666666667777777777777777777777777777665
No 268
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.02 E-value=0.25 Score=22.05 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555443
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.86 E-value=0.27 Score=21.92 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHh
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 55 (176)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555444
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.67 E-value=2.1 Score=31.63 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=17.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
..++.+.|+..++-.+++.+-+...+|+..
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 345566666666666666666555555443
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.64 E-value=2.1 Score=32.34 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=45.5
Q ss_pred hCChhHHHHHHH--HHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 5 ECHLDAALKLFG--QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 5 ~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.|+++++.++.+ ++.. ..+....+.++..+-+.|..+.|+++..+-.. -.....+.|+++.|.
T Consensus 274 ~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp TT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred cCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 456666655554 2221 11355578888888889988888877644221 123333444444444
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
++.++. .+...|..|.+...+.|+++-|.+.|.+
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 433221 1444555555555555555555555544
No 272
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.60 E-value=1.1 Score=28.11 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=78.4
Q ss_pred hCChhHHHHHHHHHh--------hCCCCccH--HHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-----CcChhhHHHHH
Q 030489 5 ECHLDAALKLFGQLT--------DRGLEPDI--ITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-----KPNSITFTILI 69 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~--------~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll 69 (176)
.|..-..++.|.+.. +.+..++. ...|.++......+.+...+.+++.+..-.. ..+..+|++++
T Consensus 7 ~g~~~~nL~~w~~fi~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if 86 (145)
T PF13762_consen 7 LGNVLANLEVWKTFINSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIF 86 (145)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHH
Confidence 344444555554433 33444443 4467888888889999999988887743211 23677899999
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 70 DAFCKEGR-MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 70 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
.+..+..- --.+..+|..|++.+.+++..-|..+|.++.+....+
T Consensus 87 ~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 87 KSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 99977666 5567888999998889999999999999987664433
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.52 E-value=1.2 Score=28.39 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=9.6
Q ss_pred HHhCCChhHHHHHHHHHHh
Q 030489 37 YCSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 37 ~~~~~~~~~a~~~~~~m~~ 55 (176)
+...|+|.+|+.+|+.+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
No 274
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=3.1 Score=32.53 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=64.5
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|.... -|..|+..+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHH
Confidence 445555555554332 256678888888888888888877776543 25667777777777776666
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
+-....+.|. .|....+|...|+++++.+++..
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 6555555543 24455667788888888877754
No 275
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.33 E-value=1.5 Score=29.72 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=41.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCcChhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~ 71 (176)
+.+.+++.+|+.....-++.. +.+...-..++..++-.|+|++|..-++-.-+- ...+-..+|..++.+
T Consensus 11 LL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 346677777777776666553 335666667777777777777777666554432 223344555555543
No 276
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.20 E-value=0.96 Score=26.21 Aligned_cols=48 Identities=4% Similarity=-0.019 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+.-++.+-+..+...+..|++.+..+.+.+|.+.+++.-|.++++-++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344556666677777777777777777777777777777777777665
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=1.6 Score=30.04 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=6.4
Q ss_pred hCChhHHHHHHHHH
Q 030489 5 ECHLDAALKLFGQL 18 (176)
Q Consensus 5 ~~~~~~a~~~~~~~ 18 (176)
.+++++|-..+...
T Consensus 44 Ak~feKakdcLlkA 57 (308)
T KOG1585|consen 44 AKKFEKAKDCLLKA 57 (308)
T ss_pred hccHHHHHHHHHHH
Confidence 44455554444433
No 278
>PRK11906 transcriptional regulator; Provisional
Probab=92.93 E-value=3.1 Score=31.37 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=63.3
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 86 (176)
...+|.++-+...+.+ +.|......+..+..-.++++.+..+|++....+.. ...+|...--.+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455666666666665 336777777777777777777888888776665321 33444444445566777888877777
Q ss_pred HHHhcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHH
Q 030489 87 KMLEKGPKANV-VTYSCLIDGYFKSQNMKSAFDVY 120 (176)
Q Consensus 87 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~ 120 (176)
+..+.++..-. ......++.|+.. ..+.+++++
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 75554332111 2222233455544 344444444
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.75 E-value=0.43 Score=21.07 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 100 YSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
|..+-..|.+.|++++|++.|++...
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44445555555555555555555443
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.74 E-value=3.8 Score=31.94 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHH---HHhCCChhHHHHHHHHHHh-------CCCCcChhhHHHHHHHHHhcC-
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICG---YCSLNRLDEAVQLFEKLTC-------VQLKPNSITFTILIDAFCKEG- 76 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~- 76 (176)
...|.+.++...+.|.. .....-.++.. +....+.+.|+.+|+...+ .| +....+.+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 34566666666666522 22222222222 3355567777777766655 33 2234444555554432
Q ss_pred ----CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCCC-------------CChHH
Q 030489 77 ----RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK-SQNMKSAFDVYEEMCENNISPNIA-------------GRPTE 138 (176)
Q Consensus 77 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~ 138 (176)
+.+.|..++....+.|.+ +....-..+.-... ..+...|.++|......|..+-.. .+.+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 455566666666665532 33222222222222 234556666666554444322211 44555
Q ss_pred HHHHHHHHHHCC
Q 030489 139 AMQLYDSMLRNG 150 (176)
Q Consensus 139 a~~~~~~m~~~g 150 (176)
|..++.+.-+.|
T Consensus 383 A~~~~k~aA~~g 394 (552)
T KOG1550|consen 383 AFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHcc
Confidence 555555555554
No 281
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=1.1 Score=33.15 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=70.7
Q ss_pred hhhCChhHHHHHHHHHhhC---CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhh---HHHHHHHHHhcC
Q 030489 3 IKECHLDAALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT---FTILIDAFCKEG 76 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~ 76 (176)
.+.|++..|.++|.+.+.. +..|+...|-....+..+.|+..+|+.--+...+. |... +..-..++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHH
Confidence 4789999999999988765 45667788888888889999999999988877653 3333 223335566778
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHH
Q 030489 77 RMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYF 108 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 108 (176)
++++|.+-|++..+..-.+ ...++.....++-
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 8999999888876543221 2334444444443
No 282
>PRK11906 transcriptional regulator; Provisional
Probab=92.61 E-value=3.5 Score=31.12 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=92.5
Q ss_pred ChhHHHHHHHHHhh-CCCCcc-HHHHHHHHHHHHh---------CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc
Q 030489 7 HLDAALKLFGQLTD-RGLEPD-IITYNTIICGYCS---------LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75 (176)
Q Consensus 7 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 75 (176)
..+.|+.+|.+... +.+.|+ ...|..+..++.. .....+|.++-+...+.+. -|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 34678889988882 223443 3444433333322 2234566777777776653 3777777777777888
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC--------------CChHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------------GRPTEAMQ 141 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------~~~~~a~~ 141 (176)
++++.|...|++....++. ...+|...--...-.|+.++|.+.+++..+. .|... ...+.|++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNPLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCchhhhHH
Confidence 8899999999999988654 6677777777778899999999999986543 23322 66677777
Q ss_pred HHHHHH
Q 030489 142 LYDSML 147 (176)
Q Consensus 142 ~~~~m~ 147 (176)
++.+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 765543
No 283
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.50 E-value=0.52 Score=22.92 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 284
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.43 E-value=0.45 Score=26.34 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=28.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcCh--hhHHHHHHHHHhcCCHHHHHHH
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNS--ITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.+..| ..++.++|+..|....+.-..|.. .++..++.+|+..|.+++++++
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433 666667777777666554322211 3445566667777776665554
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.40 E-value=0.49 Score=20.87 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
+..+..++.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444555555555555554443
No 286
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=92.38 E-value=1.8 Score=27.24 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC
Q 030489 13 KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 77 (176)
++.+.+.+.|.+++..= ..++..+.+.+..-.|.++|+++.+.+...+..|...-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455566666655432 35666666666667777777777777666666666666666666554
No 287
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.37 E-value=3.5 Score=30.58 Aligned_cols=117 Identities=13% Similarity=0.086 Sum_probs=76.6
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHH--HhCCChhHHHHHHHHHHhCCCCcChhh--HHHHHHHHHhcCCHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGY--CSLNRLDEAVQLFEKLTCVQLKPNSIT--FTILIDAFCKEGRMDD 80 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~ 80 (176)
.|+-..|.++-.+..+. +..|-..+..++.+- .-.|+++.|.+-|+-|... |.... ...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45566666665544322 233444455555543 4578999999999998852 22222 2334444456788888
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
|.++-+..-..-.. -.-.+...++..+..|+|+.|+++.+.-...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 88888877665433 5567888899999999999999999876543
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.27 E-value=2 Score=27.68 Aligned_cols=96 Identities=11% Similarity=0.191 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 030489 47 VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ--NMKSAFDVYEEMC 124 (176)
Q Consensus 47 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~ 124 (176)
.++.+.+.+.+++|+...+..+++.+.+.|++....+ +.+.++-+|.......+-.+.... -.+-|+.++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556777788999999999999999999999766444 444445555555444443322211 0222333333322
Q ss_pred -HCCCCCC---CCCChHHHHHHHHHH
Q 030489 125 -ENNISPN---IAGRPTEAMQLYDSM 146 (176)
Q Consensus 125 -~~~~~~~---~~~~~~~a~~~~~~m 146 (176)
....... ..|++-+|+++.++.
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1000000 017778888877765
No 289
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.12 E-value=1.2 Score=30.20 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG--PKANVVTYSCLIDG 106 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 106 (176)
|.+.-+..+.+.+...+++....+-.+.+ +.|..+-+.++..++-.|++++|...++-..... ..+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777889999999999998877764 3366667788999999999999998877665432 23345667777766
Q ss_pred HH
Q 030489 107 YF 108 (176)
Q Consensus 107 ~~ 108 (176)
-.
T Consensus 82 ea 83 (273)
T COG4455 82 EA 83 (273)
T ss_pred HH
Confidence 54
No 290
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=3.9 Score=30.46 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=84.8
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHH-------------HHHHHHHHHhCCChhHHHHHHHHHHhC---CCCcChhhHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIIT-------------YNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFTIL 68 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l 68 (176)
..+.+.|...|.+-+..+ |+... +..=.+-..+.|++.+|.+.|.+.... ++.|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 445666777777666543 32221 222234456789999999999987764 344556667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
.....+.|+.++|+.--++..+.+.. -+..|..-..++...++|++|.+-++...+....+...
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r 357 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIR 357 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence 77788999999999988887765422 33444455566777899999999999887655544333
No 291
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.04 E-value=2.9 Score=34.11 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=72.3
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHH----------HhCCC---------CcChhh
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL----------TCVQL---------KPNSIT 64 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m----------~~~~~---------~~~~~~ 64 (176)
..|++++|+++-+.=..- .-..||..-...+-..++.+.|++.|+.. ..... ..|...
T Consensus 838 s~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L 914 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL 914 (1416)
T ss_pred hcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence 356666666665432211 13356666666666777788888877642 22110 123344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--------------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEK--------------------GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
|.--....-..|+.+.|+.+|....+. .-.-|......|...|-..|++.+|..+|.+.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444444455678888888877765442 11336677788899999999999999998765
No 292
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.99 E-value=1.5 Score=25.66 Aligned_cols=47 Identities=4% Similarity=0.017 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
-+..+-+..+...+..|++.+..+.+.+|.+.+++.-|.++++-++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35677778888888999999999999999999999999999998865
No 293
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=2.1 Score=29.38 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=11.0
Q ss_pred CChHHHHHHHHHHHHC
Q 030489 134 GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~ 149 (176)
+++.+|+++|+++-..
T Consensus 168 eqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777776644
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.78 E-value=4.5 Score=30.58 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=78.3
Q ss_pred hhhCChhHHHHHHHHHhhCCCC-c---c-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHH--HHhc
Q 030489 3 IKECHLDAALKLFGQLTDRGLE-P---D-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA--FCKE 75 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~-~---~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~ 75 (176)
-+.+++.+|.++|.++.++.-. | . ...-+.++++|.. ++.+.....+....+. .| ...|-.+..+ +.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 3678999999999998765211 1 1 3344577888754 4466666666666654 22 3344445444 4678
Q ss_pred CCHHHHHHHHHHHHhc--CCCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 76 GRMDDATMMFSKMLEK--GPKA------------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+.+++|.+.+..-.+. +..| |...=++.+.++...|.+.++..++++|...
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 8899998888765543 2111 2222355678889999999999999998653
No 295
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=91.69 E-value=1.7 Score=28.55 Aligned_cols=30 Identities=7% Similarity=-0.123 Sum_probs=15.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 95 ANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
|+..+|..++.++...|+.++|.+...++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555555555554443
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.67 E-value=2.6 Score=27.56 Aligned_cols=128 Identities=10% Similarity=0.101 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH-HHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT-ILIDAFCKEGRMDDATMMFSKMLEKGPKANVV-TYSCL 103 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 103 (176)
....|..-+. +++.+..++|+.-|..+.+.|...-+..-. .........|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455655555 567888999999999999887653222211 12234578899999999999998765555443 12222
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHHCCCCCc
Q 030489 104 --IDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPD 154 (176)
Q Consensus 104 --~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~~g~~p~ 154 (176)
...+...|.++.+..-.+-+...+.+.-.. |++..|.+.|.++....-.|.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 234567888998887777654332222222 999999999999986544444
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.65 E-value=1.5 Score=31.82 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=49.6
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 35 CGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
+-|.++|.+++|++.|..-... .| |.+++..-..+|.+...+..|+.=....+..+- ..+..|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 4466777788888877664432 34 667777777777777777766665555544321 1333444444444444555
Q ss_pred HHHHHHHHHHH
Q 030489 114 KSAFDVYEEMC 124 (176)
Q Consensus 114 ~~a~~~~~~m~ 124 (176)
.+|.+=++...
T Consensus 182 ~EAKkD~E~vL 192 (536)
T KOG4648|consen 182 MEAKKDCETVL 192 (536)
T ss_pred HHHHHhHHHHH
Confidence 55544444443
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.65 E-value=1.9 Score=30.52 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 25 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
.+...+..++..| +-+-++++.-.|-+=.+... ..-..+++.....|..+|.+.+|.++.+.....+ +.+...|-.+
T Consensus 242 ltide~kelv~~y-kgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~l 319 (361)
T COG3947 242 LTIDELKELVGQY-KGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGL 319 (361)
T ss_pred cCHHHHHHHHHHh-cCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 5666777777766 22333332222211111000 1123355666778899999999999999888875 4588888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 030489 104 IDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+..+...|+--.+.+-++.+.
T Consensus 320 m~~la~~gD~is~~khyerya 340 (361)
T COG3947 320 MASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHhccchhhhhHHHHHH
Confidence 999999999777777777664
No 299
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.64 E-value=0.54 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 102 CLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+..+|...|+.+.|.++++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4678999999999999999998854
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.51 E-value=3.3 Score=31.60 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=52.8
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 030489 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (176)
Q Consensus 37 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 116 (176)
....|+++.+.+.+....+. +.....+...++....+.|+++.|..+-+.|....++ +..........--..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 45566777776666554433 2234455666677777777777777777777665555 444444444444555666777
Q ss_pred HHHHHHHHHC
Q 030489 117 FDVYEEMCEN 126 (176)
Q Consensus 117 ~~~~~~m~~~ 126 (176)
.-.|+++...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 7777666543
No 301
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.47 E-value=0.67 Score=20.49 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566667777777777777777776654
No 302
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.41 E-value=5 Score=30.37 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHH--HHhCCChhHHHHHHHHHHhC--CCCc------------ChhhHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICG--YCSLNRLDEAVQLFEKLTCV--QLKP------------NSITFTILID 70 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~ll~ 70 (176)
+.+........+.+.. | ...|-.+..+ +.+.+.+.+|++.+....++ +..| |-..=+..+.
T Consensus 60 nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 4455555555555442 2 2223333333 34889999999999887765 3222 1122255677
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhc
Q 030489 71 AFCKEGRMDDATMMFSKMLEK----GPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 110 (176)
++...|++.++..+++++... ....+..+|+.++-.+++.
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 889999999999999888754 3448999999987777654
No 303
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=91.25 E-value=4.4 Score=30.36 Aligned_cols=148 Identities=12% Similarity=0.061 Sum_probs=98.8
Q ss_pred hhCChhHHHHHHHHHh----hCCCCc-cHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CC-CCcChhhHHHHHHHHH
Q 030489 4 KECHLDAALKLFGQLT----DRGLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTC----VQ-LKPNSITFTILIDAFC 73 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~~~~~ll~~~~ 73 (176)
-.|+++.|+...+.-. +.|-+. -...+..+.+++.-.|+++.|.+.|+.-.. .| -.....++.+|-++|.
T Consensus 207 lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence 3578888887765432 334322 346778899999999999999999976432 22 1234566778889998
Q ss_pred hcCCHHHHHHHHHHHHh----c-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-CCCChHHHHHHHHHHH
Q 030489 74 KEGRMDDATMMFSKMLE----K-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN-IAGRPTEAMQLYDSML 147 (176)
Q Consensus 74 ~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~a~~~~~~m~ 147 (176)
-..++++|+.++..-.. . +..-....|-+|-.+|...|..++|+.+.+.-.+.....+ ..|....-..+.+...
T Consensus 287 ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~ 366 (639)
T KOG1130|consen 287 LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLIL 366 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHH
Confidence 88999999988765431 1 1222556788899999999999999998886654433332 2344444444555554
Q ss_pred HCCC
Q 030489 148 RNGI 151 (176)
Q Consensus 148 ~~g~ 151 (176)
..|.
T Consensus 367 ~lG~ 370 (639)
T KOG1130|consen 367 ELGQ 370 (639)
T ss_pred HhCC
Confidence 4443
No 304
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=91.12 E-value=0.98 Score=23.76 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=24.4
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 55 (176)
.++...++.+.++.. +-|..-.-.++.++...|++++|.++.+++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555433 22333344566666666666666666665543
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.04 E-value=0.48 Score=19.87 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=2.5
Q ss_pred cCCHHHH
Q 030489 75 EGRMDDA 81 (176)
Q Consensus 75 ~~~~~~a 81 (176)
.|++++|
T Consensus 14 ~G~~~eA 20 (26)
T PF07721_consen 14 QGDPDEA 20 (26)
T ss_pred cCCHHHH
Confidence 3333333
No 306
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.98 E-value=3 Score=27.01 Aligned_cols=145 Identities=20% Similarity=0.222 Sum_probs=94.8
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHH-HHHhCCChhHHHHHHHHHHhCCC--CcChhhHHHHHHHHHhcCCHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIIC-GYCSLNRLDEAVQLFEKLTCVQL--KPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
..+++..+.+.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 3455678888888877654333 222333333 78889999999999988755221 1233344444455677888999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC-C----------CChHHHHHHHHHHHHC
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-A----------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~----------~~~~~a~~~~~~m~~~ 149 (176)
+...+..............+..+...+...++++.+...+............ . +..+.+...+.+....
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999888887643224677888888888888888888888887654332000 0 5677777777776644
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.82 E-value=0.72 Score=20.10 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=9.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 030489 70 DAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~ 90 (176)
.++.+.|++++|.+.|+++++
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 334444444444444444443
No 308
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=90.55 E-value=3.5 Score=27.09 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhhCCCCc--cHHHH-----HHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh
Q 030489 8 LDAALKLFGQLTDRGLEP--DIITY-----NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~--~~~~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 74 (176)
++.|+.+|+.+.+.-..| -.... ...+-.|.+.|.+++|.+++++..+ .|+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 456777777776553222 11111 2334457777777777777777665 3344444444433333
No 309
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.36 E-value=0.91 Score=20.05 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLT 54 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~ 54 (176)
|..+...|...|++++|+..|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555554433
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.26 E-value=1.3 Score=32.12 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=56.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
|.++|++++|.++|..-... .| |.+++..-..+|.+..++..|+.=.......+ ..-+-.|..-+.+-...|...+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 56899999999999887765 44 88888888899999999887765554443321 1112233333344444555666
Q ss_pred HHHHHHHHHhc
Q 030489 81 ATMMFSKMLEK 91 (176)
Q Consensus 81 a~~~~~~~~~~ 91 (176)
|.+=++...+.
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 66666655554
No 311
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.26 E-value=8.1 Score=30.82 Aligned_cols=75 Identities=12% Similarity=-0.044 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---CChHHHHHHHHHHHHCCCCCcH-----------HHHHHHHH
Q 030489 98 VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---GRPTEAMQLYDSMLRNGIMPDG-----------LLLSTLAD 163 (176)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~l~~ 163 (176)
.+.-.+..-+.+...+.-|-++|..|-+..-..... +++++|..+-++..+. .||. .-|..--+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHH
Confidence 333333344444556666777777664322211111 7777777776665532 3332 13344445
Q ss_pred HhhcccCcccc
Q 030489 164 YNLQSSGSQEH 174 (176)
Q Consensus 164 ~~~~~g~~~~A 174 (176)
+|.+.|+-+||
T Consensus 826 AfhkAGr~~EA 836 (1081)
T KOG1538|consen 826 AFHKAGRQREA 836 (1081)
T ss_pred HHHHhcchHHH
Confidence 56666665554
No 312
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.97 E-value=5.2 Score=28.20 Aligned_cols=85 Identities=8% Similarity=0.006 Sum_probs=60.5
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh-----c
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK-----E 75 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-----~ 75 (176)
|++.-|+|.+++.-.-+--+.--+....+...-|-.|.+.+.+..+.++-....+..-.-+...|.++...|.. .
T Consensus 92 ALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPL 171 (309)
T PF07163_consen 92 ALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPL 171 (309)
T ss_pred HHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhcc
Confidence 35567788877776655544322335566666777799999999999999988876444455568887777654 6
Q ss_pred CCHHHHHHHH
Q 030489 76 GRMDDATMMF 85 (176)
Q Consensus 76 ~~~~~a~~~~ 85 (176)
|.+++|+++.
T Consensus 172 G~~~eAeelv 181 (309)
T PF07163_consen 172 GHFSEAEELV 181 (309)
T ss_pred ccHHHHHHHH
Confidence 8999988876
No 313
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=89.58 E-value=3.3 Score=25.40 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 45 EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 45 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
+..+.++.+....+.|++.....-+.+|.+.+++..|..+|+-++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555554
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.50 E-value=4.6 Score=26.86 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CChH
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------GRPT 137 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~ 137 (176)
..+...+++++|...++.......+-+ ..+=..|.......|.+++|+..++.....+..+... |+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 456778888888888887664321111 1222334566677788888888888776654444222 8888
Q ss_pred HHHHHHHHHHHCC
Q 030489 138 EAMQLYDSMLRNG 150 (176)
Q Consensus 138 ~a~~~~~~m~~~g 150 (176)
+|+.-|.+..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888887664
No 315
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.18 E-value=3.2 Score=33.16 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=61.8
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
-|+..+|.++-.+.+ .|+...|-.=+.+++..++|++-+++-+.+. ++--|.-...+|.+.|+.++|.++
T Consensus 697 ~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 697 IGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred ccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhh
Confidence 355555555544443 4577777777777777777777666554433 234455667777777777777777
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
+-.... +.-...+|.+.|++.+|.++--+
T Consensus 767 iprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 767 IPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 654321 11566777777777777665543
No 316
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.91 E-value=4.1 Score=28.97 Aligned_cols=63 Identities=8% Similarity=0.020 Sum_probs=38.5
Q ss_pred cChhhHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 60 PNSITFTILIDAF----CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 60 ~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+...+.-++..| .....+..|...=+.+.+. -..+++.....|...|.+.+|.++-+.....
T Consensus 242 ltide~kelv~~ykgdyl~e~~y~Waedererle~l----y~kllgkva~~yle~g~~neAi~l~qr~ltl 308 (361)
T COG3947 242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQL----YMKLLGKVARAYLEAGKPNEAIQLHQRALTL 308 (361)
T ss_pred cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Confidence 3555566666655 2333444444333333221 3446677778899999999999988877654
No 317
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.74 E-value=6.5 Score=27.63 Aligned_cols=94 Identities=7% Similarity=0.105 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCChh---HHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLD---EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (176)
.++..++.+|...+..+ +|..+++.+.+.... .+.++..-+..+.+.++.+.+.+.+.+|+.. +......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 56778888888877654 566677777554222 3556666677887799999999999999876 332445555555
Q ss_pred HHH---HhcCCHHHHHHHHHHHH
Q 030489 105 DGY---FKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 105 ~~~---~~~g~~~~a~~~~~~m~ 124 (176)
..+ .... ...+...+..+.
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l 184 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLL 184 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHH
Confidence 555 3332 334444554443
No 318
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=88.17 E-value=4.7 Score=25.33 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 030489 48 QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 48 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
++.+.+.+.|.+++..= ..++..+...+..-.|.++++++.+.++..+..|-..-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34556677788766543 45677788787779999999999999888888887777777777764
No 319
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.14 E-value=3.8 Score=25.17 Aligned_cols=46 Identities=4% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+..+.+..+...++.|++.+...-+.++.+.+|+..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4556677777888999999999999999999999999999998764
No 320
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.13 E-value=5.2 Score=25.82 Aligned_cols=121 Identities=19% Similarity=0.183 Sum_probs=59.3
Q ss_pred hCChhHHHHHHHHHhhC-CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHH-HHHhcCCHHHHH
Q 030489 5 ECHLDAALKLFGQLTDR-GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID-AFCKEGRMDDAT 82 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~ 82 (176)
.+.+..+...+...... ........+......+...+.+..+...+.........+ ......... .+...|+++.|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~ 150 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEAL 150 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555444431 123344555555555556666666666666655432222 111222222 566666666666
Q ss_pred HHHHHHHhcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 83 MMFSKMLEKGP--KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 83 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
..+++...... ......+......+...++++.+...+......
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 151 ELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 66666544221 112333333333455566666666666665543
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=4.1 Score=33.06 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=54.9
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.|++++|...|-+-... +.|. .++.-|....+..+-..+++.+.+.|+. +..--+.|+.+|.+.++.++..
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 4678888888888665543 2222 3455567777777888888888888876 5555677889999988887766
Q ss_pred HHHHH
Q 030489 83 MMFSK 87 (176)
Q Consensus 83 ~~~~~ 87 (176)
++.+.
T Consensus 452 efI~~ 456 (933)
T KOG2114|consen 452 EFISK 456 (933)
T ss_pred HHHhc
Confidence 55443
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.95 E-value=5 Score=25.39 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=25.2
Q ss_pred hCCChhHHHHHHHHHHhCCCCcChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhcC
Q 030489 39 SLNRLDEAVQLFEKLTCVQLKPNSITFTIL-IDAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 39 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
..++.+++..++.-|.-- .|+..-...+ .-.+...|++++|..+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 355566666666555532 2222222111 122355566666666666665543
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.91 E-value=5.2 Score=27.00 Aligned_cols=67 Identities=7% Similarity=0.003 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCC----CcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHH
Q 030489 78 MDDATMMFSKMLEKGPK----ANV-VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~----~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~ 144 (176)
...|.+.|++....... .+. ...-.+.....+.|++++|.+.|..+...+-......-.+.|.+.++
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 34566666665543222 122 23334556777889999999999998775544443333444554444
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.85 E-value=6.4 Score=26.50 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=63.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSI----TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (176)
.+-+.+.|++++|..-|......-...... .|..-..++.+.+.++.|+.-....++.++. .....-.-..+|-+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 344678889999999888877652221111 2222334567788888888888888777643 44444455678888
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 030489 110 SQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 110 ~g~~~~a~~~~~~m~~~~ 127 (176)
...++.|+.=|+++.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888999998888887653
No 325
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=87.76 E-value=5.6 Score=25.72 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=40.5
Q ss_pred HhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH
Q 030489 18 LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 18 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 79 (176)
+.+.|++++..=. .++..+....+.-.|.++++.+.+.+..++..|....|..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4556666554433 455555555667778888888887777777777777777777776554
No 326
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.66 E-value=2.2 Score=21.06 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=14.1
Q ss_pred hCCChhHHHHHHHHHHhCCCCcChhhHHHHH
Q 030489 39 SLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69 (176)
Q Consensus 39 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 69 (176)
+.|-..++..+++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444444444444444444444333
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.32 E-value=6.7 Score=26.12 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=67.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI-----LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
+...+...|++++|+.-+++.... |....+.. |.+.....|.+++|..+++...+.+. .......--+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 445578899999999999887753 33333433 44567788999999999998876653 333444556889
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 030489 108 FKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m~~~~ 127 (176)
...|+-++|..-|++..+.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999988765
No 328
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.43 E-value=2.7 Score=20.76 Aligned_cols=38 Identities=5% Similarity=0.139 Sum_probs=30.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 030489 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (176)
+....+.|-..++...++.|.+.|+..+...|..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34456678888999999999999999888888877653
No 329
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.00 E-value=7.7 Score=25.53 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=42.1
Q ss_pred HHHhCCChhHHHHHHHHHHhC-CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 030489 36 GYCSLNRLDEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 36 ~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
......+.+......+...+. ...|++.+|..++.++...|+.++|.++.+++...-
T Consensus 117 ~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 117 LARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 333555555555555444433 457899999999999999999999999999988763
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.96 E-value=5.2 Score=23.52 Aligned_cols=50 Identities=8% Similarity=0.067 Sum_probs=25.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+.+...|++++|..+.+.+ +.||...|-.|-.. +.|..++...-+.+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 4455566666666555544 35566665554433 34444444444444433
No 331
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.91 E-value=4.6 Score=22.93 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 030489 46 AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (176)
Q Consensus 46 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 116 (176)
+-+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 44566666666543 44444444333345677777777777776 43 23677777777776665444
No 332
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=85.76 E-value=2.9 Score=29.69 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=29.6
Q ss_pred cChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 030489 60 PNSIT-FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102 (176)
Q Consensus 60 ~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (176)
||..+ |+..|....+.|++++|++++++..+.|+.--..+|-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 44443 45778888888888888888888888877644444433
No 333
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.54 E-value=4.5 Score=22.49 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 030489 74 KEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
..++.++|+..|....+.-..+. -.++..++.+|+..|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999998886644432 2457778899999999999887654
No 334
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=12 Score=27.33 Aligned_cols=119 Identities=8% Similarity=0.064 Sum_probs=69.1
Q ss_pred hhhCChhHHHHHHHHHhhC-CCCccHHHHHHHHH--HHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH
Q 030489 3 IKECHLDAALKLFGQLTDR-GLEPDIITYNTIIC--GYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 79 (176)
.-.|+.+.-...++++... +......+|-.=|. ++...|-+++|++.-++..+.+ +.|.-.-++....+--.|+..
T Consensus 148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~K 226 (491)
T KOG2610|consen 148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHK 226 (491)
T ss_pred HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhh
Confidence 3456666666666666532 33333344443333 3457888888888887777654 235566666777777778888
Q ss_pred HHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 80 DATMMFSKMLEK---GPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 80 ~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
++.++..+-... +--.-..-|=+..-.+...+.++.|+++|+.
T Consensus 227 eg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 227 EGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 887776654321 1111112233334445666788888888874
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.23 E-value=1.9 Score=17.76 Aligned_cols=26 Identities=23% Similarity=0.361 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+|..+...+...|+++.|...++...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 336
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=85.20 E-value=5 Score=28.44 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=58.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------CChHHHHH
Q 030489 69 IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------GRPTEAMQ 141 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~a~~ 141 (176)
+....+.++.....+.+..+. ....-...+..+...|+|..|+++..+..+.--..... .++++...
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~ 178 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLE 178 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHH
Confidence 344444445555555554443 33444556777788999999999998775421111111 33344444
Q ss_pred HHHHHHHC-----CCCCcHHHHHHHHHHhhcccCcccc
Q 030489 142 LYDSMLRN-----GIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 142 ~~~~m~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
....+.+. -...|+..|..++.+|...|+.+.+
T Consensus 179 ~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 179 LIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHH
Confidence 33333321 1156889999999999999876543
No 337
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.19 E-value=16 Score=28.57 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=99.5
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHH-HhcCCHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF-CKEGRMDDAT 82 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~ 82 (176)
+.|+++.+.-+|++..-- +..-...|-..++-....|+.+-|..++....+.-++ +......+=..+ -..|+...|.
T Consensus 309 ~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHH
Confidence 456677777777665532 2224455666666666668888877777665544332 222222222223 3457999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCCC---------------CChHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF---DVYEEMCENNISPNIA---------------GRPTEAMQLYD 144 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~m~~~~~~~~~~---------------~~~~~a~~~~~ 144 (176)
.+++.+.+.- +--+..-..-+....+.|+.+.+. +++.........+... ++.+.|..++.
T Consensus 387 ~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~ 465 (577)
T KOG1258|consen 387 VILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILL 465 (577)
T ss_pred HHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999988763 323333444466667788888887 4444443332222222 89999999999
Q ss_pred HHHHCCCCCcHHHHHHHHHHhhccc
Q 030489 145 SMLRNGIMPDGLLLSTLADYNLQSS 169 (176)
Q Consensus 145 ~m~~~g~~p~~~~~~~l~~~~~~~g 169 (176)
++.+. ..++...|..++..+...+
T Consensus 466 ~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 466 EANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred Hhhhc-CCccHHHHHHHHHHHHhCC
Confidence 99864 4566677777777666555
No 338
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=85.02 E-value=4.1 Score=24.20 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=26.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4444444455556666666666665555666666566666655544
No 339
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.97 E-value=16 Score=28.87 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=58.8
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.|+.-.|..++.......+.-..+..-.|.....+.|....|-.++.+..... ...+-++..+-+++....++++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45566666666655543222233334445555556666666777776655544 23455666667777777778888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHH
Q 030489 85 FSKMLEKGPKANVVTYSCLIDG 106 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~ 106 (176)
|++..+.... +...-+.|...
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHHHH
Confidence 8777766543 55555555443
No 340
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.73 E-value=12 Score=26.65 Aligned_cols=134 Identities=15% Similarity=0.146 Sum_probs=81.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
-.......|++.+|...|+........ +...--.+..+|...|+.+.|..++..+-..--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334467899999999999988776433 4566677889999999999999999987643222222222223444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHC-CCCCcHHHHHHHHHHhhcccC
Q 030489 113 MKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRN-GIMPDGLLLSTLADYNLQSSG 170 (176)
Q Consensus 113 ~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 170 (176)
..+...+-.+... .|+.. |+.+.|++.+-.+... .-.-|...-..++..+.--|.
T Consensus 219 ~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 TPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 4333333333332 23332 8889998877665532 122344555566665555553
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.55 E-value=18 Score=28.43 Aligned_cols=121 Identities=14% Similarity=0.078 Sum_probs=78.4
Q ss_pred chhhCChhHHHHHHHHHhh-------CCCCccHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHhCCCCcChhhHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTD-------RGLEPDIITYNTIICGYCSLN-----RLDEAVQLFEKLTCVQLKPNSITFTILI 69 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll 69 (176)
++..++++.|+.+|+...+ .| .....+.+..+|.+.. +...|+.+|......|.+ +...+-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 4567789999999998877 44 3345666777776643 567799999888877643 433333222
Q ss_pred HHHHh-cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC
Q 030489 70 DAFCK-EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF--KSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 70 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~ 127 (176)
--... ..+...|.++|....+.|.. ...-+-.++.... -..+...|..++++..+.|
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 22222 34678999999999888743 3333333333222 3357888888888888777
No 342
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.51 E-value=11 Score=25.87 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHH
Q 030489 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSML 147 (176)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~ 147 (176)
-..+||.+---+...|+++.|.+.|+...+.+...+.. |++..|.+-|.+.-
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 34567777777777788888888777776544333322 66666665554444
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.47 E-value=8.1 Score=24.49 Aligned_cols=67 Identities=15% Similarity=0.004 Sum_probs=45.1
Q ss_pred hhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 030489 63 ITFTILIDA---FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (176)
Q Consensus 63 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 130 (176)
.+.+.|+.. -...++++.+..+++-|.-..+. ....-..-.-.+...|+|.+|.++|+++.+.+..+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 344444443 34588999999999998865332 22222223445678999999999999998776543
No 344
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=84.46 E-value=5.6 Score=22.61 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 10 AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 10 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
.+.++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. +| +..|...++++...|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 356788888888844 66666666666667899999999999998 54 3478888999988887665543
No 345
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.42 E-value=4.4 Score=25.48 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH
Q 030489 25 PDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 25 ~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 79 (176)
.+..+|+.++.+..+... ---+..+|+.|++.+..+++.-|..+++++.+-...+
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 467889999999987777 6677889999999889999999999999987764433
No 346
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.80 E-value=10 Score=28.01 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=76.8
Q ss_pred hhCChhHHHHHHHHHhhC----C-CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCcChhh-HH-----HH
Q 030489 4 KECHLDAALKLFGQLTDR----G-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC----VQLKPNSIT-FT-----IL 68 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~-~~-----~l 68 (176)
..+.++++++.|+...+- + ......++-.|-..|.+..++++|.-+...... .++. |... |. .+
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhm 212 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHM 212 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHH
Confidence 346788888888876543 1 122457788999999999999998776655432 2332 3322 22 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----cCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 69 IDAFCKEGRMDDATMMFSKMLE----KGPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
.-++...|++..|.+.-++..+ .|-. ........+.+.|...|+.+.|+.-|++.
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 4456778888888877776543 3322 12334456778888999988888777754
No 347
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=83.73 E-value=4 Score=29.00 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=35.8
Q ss_pred ccH-HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHH
Q 030489 25 PDI-ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI 69 (176)
Q Consensus 25 ~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 69 (176)
|+. .-|+..|..-.+.|++++|++++++.++.|+.--..+|-.-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 444 446699999999999999999999999999876555554433
No 348
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=83.56 E-value=3.4 Score=24.81 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=28.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 77 (176)
.++......+..-.|.++++.+.+.+...+..|...-++.+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555555655666777777777766666666666666666666554
No 349
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=83.23 E-value=2.1 Score=26.50 Aligned_cols=29 Identities=34% Similarity=0.631 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (176)
|.-..|-.+|+.|.+.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444455666777777776655 56666554
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.67 E-value=20 Score=27.68 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=77.6
Q ss_pred HHHHhCCChhHH-HHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 35 CGYCSLNRLDEA-VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 35 ~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
.--...|+.-.| .+++.-+....-.|+..... ...+...|.++++.+.+...... +-....+-.+++....+.|+|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 334456666555 44555555544445544433 33456779999999988776544 334667889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHH
Q 030489 114 KSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 114 ~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~ 148 (176)
++|..+-.-|....+..... |-+++++..|.++..
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 99999999998777665544 778888888887763
No 351
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=82.66 E-value=5.3 Score=20.97 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 100 YSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
--.+|.+|...|++++|.+.++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334455666666666666655554
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.64 E-value=12 Score=25.21 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=63.5
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccH-----HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDI-----ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 77 (176)
.+.|++++|.+-|....+.- ++.. ..|..-..++.+.+.++.|+.-.....+.+.. .....-.-..+|-+...
T Consensus 106 F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 46799999999999998873 3322 34445556778899999999888777765422 22222233457888899
Q ss_pred HHHHHHHHHHHHhcCC
Q 030489 78 MDDATMMFSKMLEKGP 93 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~ 93 (176)
++.|++=|.++.+..+
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999988753
No 353
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=82.46 E-value=16 Score=26.34 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----------cCCHHHH
Q 030489 47 VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----------SQNMKSA 116 (176)
Q Consensus 47 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 116 (176)
.++|+.|.+.++.|.-..|.-+.-.+.+.=.+..++.+|+.+... ..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 457777777778887777777777777777777788888877643 2225555555543 4778777
Q ss_pred HHHHHH
Q 030489 117 FDVYEE 122 (176)
Q Consensus 117 ~~~~~~ 122 (176)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777764
No 354
>PRK09462 fur ferric uptake regulator; Provisional
Probab=82.43 E-value=9.8 Score=23.90 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=36.0
Q ss_pred HHhhCCCCccHHHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 17 QLTDRGLEPDIITYNTIICGYCSL-NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 17 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
.+.+.|.+++..=. .++..+... +..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455665444332 444444443 45667777777777766666666666666666666654
No 355
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=82.24 E-value=12 Score=24.74 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCCC--cHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 78 MDDATMMFSKMLEKGPKA--NVVTYS-----CLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
++.|..+|+.+.+.-..| -..... ..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 456777777666543332 111111 233456677777777777776654
No 356
>PF13934 ELYS: Nuclear pore complex assembly
Probab=81.80 E-value=14 Score=25.22 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 030489 68 LIDAFCKEGRMDDATMMFSK 87 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~ 87 (176)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555544
No 357
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.80 E-value=17 Score=27.24 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--cC-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 66 TILIDAFCKEGRMDDATMMFSKMLE--KG-----PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
..|++.++-.|++..|.++++.+.- .+ +.-.+.+|-.+-.+|...+++.+|.++|..+.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999987641 11 22345678888899999999999999999863
No 358
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=81.51 E-value=22 Score=28.59 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH---------
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV--------- 97 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 97 (176)
..+...+...+.+...+.-|-++|..|-. ...++......+++++|..+-+..-+. .||+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 34444444545555666667777766542 235667778888899988887765432 1222
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 98 --VTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 98 --~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.-|...=.+|.+.|+-.+|..+++++...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 11222234455555555555555555443
No 359
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.48 E-value=15 Score=25.38 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----cC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 66 TILIDAFCKEGRMDDATMMFSKMLE----KG-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
-.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+--++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3456778888999999988888752 12 24455667777888888888888877665553
No 360
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=81.08 E-value=19 Score=26.30 Aligned_cols=88 Identities=15% Similarity=0.241 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC---CCCcChhhHH--HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcHH
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCV---QLKPNSITFT--ILIDAFCKEGRMDDATMMFSKMLE-----KGPKANVV 98 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 98 (176)
....++...-+.++.++|+++++++... --.|+...|. .+..++...|+..++.+++++..+ .+++|++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3445566666777999999999988753 2345665554 445667788999999999998887 67777665
Q ss_pred H-HHHHHHH-HHhcCCHHHH
Q 030489 99 T-YSCLIDG-YFKSQNMKSA 116 (176)
Q Consensus 99 ~-~~~l~~~-~~~~g~~~~a 116 (176)
+ |+.+-.- |.+.|++...
T Consensus 157 ~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHH
Confidence 5 5555444 4445666553
No 361
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.01 E-value=18 Score=25.93 Aligned_cols=121 Identities=13% Similarity=0.187 Sum_probs=75.2
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHH-------HHHHHHHHHHhCCChhHHHHHHHH----HHhCCCCcChhhHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDII-------TYNTIICGYCSLNRLDEAVQLFEK----LTCVQLKPNSITFTILIDA 71 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~ll~~ 71 (176)
++.+++++|...+.++...|...+.. +...+...|...|+...--+.... |....-+-..-...+|+.-
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 56889999999999999998776554 455677888888887665444432 2222112233444555554
Q ss_pred H-HhcCCHHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 72 F-CKEGRMDDATMMFSKMLEKGPK-----ANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 72 ~-~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
+ .....++.-+.+....++.-.. .....=..++..+.+.|.+.+|+.+...+
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4 2344555555555554432211 01122245788899999999999887654
No 362
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=80.84 E-value=7.5 Score=22.91 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCC
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG--RMDDATMMFSKMLEKGP 93 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~ 93 (176)
..++.-|...++.++|...+.++... .--......++..+...+ .-+.+-.++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 34555666667777777777665322 112223333444433332 22334455555555544
No 363
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.69 E-value=5.3 Score=31.28 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHCCCCCcHH
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGL 156 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~ 156 (176)
+++.+|.+.+-.+...++.|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHH
Confidence 55566666655555555555443
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=80.26 E-value=21 Score=26.20 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
.|..+..+.|+..+|.+.|+++.+.-.-. -......|++++....-+..+..++-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555677889999999988877552211 112334577777666655555555443
No 365
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.97 E-value=11 Score=23.00 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCcCh-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 45 EAVQLFEKLTCVQLKPNS-ITFTILIDAFCKEGRMDDATMMFSK 87 (176)
Q Consensus 45 ~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 87 (176)
.+.++|..|...|+--.. ..|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999988776544 4456667788999999999999975
No 366
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=79.92 E-value=19 Score=25.65 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHhhCCC----CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 8 LDAALKLFGQLTDRGL----EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
.+.|.+.|+.....+. ..++..-..++....+.|..+....+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4678888888876422 44666777788888888887776666666664 3467778889999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNM--KSAFDVYE 121 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 121 (176)
+++.....+..++... ..++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 9998887542334444 4444444433332 55555544
No 367
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.71 E-value=35 Score=28.52 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCC----------
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKG---PKANVVTYSCLIDGYFKSQNM--KSAFDVYEEMCENNI---------- 128 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~~~---------- 128 (176)
-|..|+..|...|+.++|.++|.+..+.. -..-...+-.+++-+.+.+.. +-+++.-+...+.+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36788889999999999999999887632 111222333455555555543 333333333322111
Q ss_pred --------CCCCC------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhc
Q 030489 129 --------SPNIA------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQ 167 (176)
Q Consensus 129 --------~~~~~------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 167 (176)
.++.. ...+.+..+++++....-.++..-.+.++..|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 11111 6677788888888866556666666777766654
No 368
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=79.54 E-value=14 Score=23.89 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=47.1
Q ss_pred HHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 030489 52 KLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKS 115 (176)
Q Consensus 52 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 115 (176)
.+...|++++..-. .++..+...++.-.|.++++.+.+.+..++..|-..-+..+.+.|-...
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 34566877665544 4566666667778899999999999888888888888888888875443
No 369
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=78.92 E-value=7.6 Score=20.43 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=13.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
..|++=+|.++++++-.....+....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 34555555555555543322234444444443
No 370
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=78.85 E-value=8.1 Score=22.92 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
.++..+...+..-.|.++++.+.+.+..++..|....++.+.+.|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666777788999999998888888888888888888887544
No 371
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.32 E-value=15 Score=23.58 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=40.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhcC
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL-IDAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
.++..-.+.++.+++..++.-+.-- .|.......+ .-.+...|++.+|..+|+++.+..
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3344445778899999999888764 4444443332 234688899999999999987654
No 372
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.29 E-value=20 Score=25.02 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (176)
...|.....+|...+++++|...+.+..+ +...+...|+. ...+++|..+.+++.+.. --+..|+.....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 45677888888899999999887766552 22333334432 123455666666665542 134456666667
Q ss_pred HHhcCCHHHHHHHHHHH
Q 030489 107 YFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 107 ~~~~g~~~~a~~~~~~m 123 (176)
|..+|.++.|-..+++.
T Consensus 101 Y~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHhCCcchHHHHHHHH
Confidence 77777666665555543
No 373
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.84 E-value=17 Score=23.92 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHH---HHhCCChhHHHHHHHHHHhC-----CCCcCh-hhHHHHHHHHHhcC--
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICG---YCSLNRLDEAVQLFEKLTCV-----QLKPNS-ITFTILIDAFCKEG-- 76 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~ll~~~~~~~-- 76 (176)
++.|.+.++.-...+ |.|...++.-..+ +++.....++.+++++..+. .+.|+. .++..+-.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 566777776655444 4456555544333 44444434454444443321 234543 56666666665543
Q ss_pred --C-------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 77 --R-------MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 77 --~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
+ +++|.+.|+...+. +|+...|+.-++... +|-++..++.+.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 2 44555555555554 689999999988874 35556666655443
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.69 E-value=41 Score=28.16 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=65.9
Q ss_pred chhhCChhHHHHHHHHHhhC---CCCccHHHHHHHHHHHHhCCCh--hHHHHHHHHHHhCCCCcChhhHHH---------
Q 030489 2 LIKECHLDAALKLFGQLTDR---GLEPDIITYNTIICGYCSLNRL--DEAVQLFEKLTCVQLKPNSITFTI--------- 67 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~--------- 67 (176)
|...|..++|+++|...... ....-...+..++..+-+.+.. +-++++-.+..+.........|+.
T Consensus 514 Y~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~si 593 (877)
T KOG2063|consen 514 YATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESI 593 (877)
T ss_pred HHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccC
Confidence 45677888888888877652 1122233444566666666554 555555555554432222222222
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 68 ---LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 68 ---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
-+-.|......+-+..+++.+....-.++..-.+.++..|++.
T Consensus 594 s~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 594 SRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred CHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 2344566667777888888888666666788888888888664
No 375
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.40 E-value=3.4 Score=25.59 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHh
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYN 165 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 165 (176)
|.-..|..+|++|.+.|-.||. ++.|+..+
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 7888899999999999888864 66666554
No 376
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=77.34 E-value=24 Score=25.95 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 030489 10 AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV 56 (176)
Q Consensus 10 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 56 (176)
+|.-+++...... +-|...--.++..|...|-...|.+.|..+.-+
T Consensus 201 ~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK 246 (365)
T PF09797_consen 201 QAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIK 246 (365)
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChH
Confidence 3444444443332 223344445555555555555555555554433
No 377
>PRK09462 fur ferric uptake regulator; Provisional
Probab=77.31 E-value=15 Score=23.04 Aligned_cols=62 Identities=10% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHHHhCCCCcChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 51 EKLTCVQLKPNSITFTILIDAFCKE-GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 51 ~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566777555433 345555554 56788999999999998888888888888888888764
No 378
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=77.31 E-value=11 Score=25.17 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCC--------------cChhhHHHHHHHHHhcCCHHHHHHHHH
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLK--------------PNSITFTILIDAFCKEGRMDDATMMFS 86 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--------------~~~~~~~~ll~~~~~~~~~~~a~~~~~ 86 (176)
-++|..|.+..+|.+..++++.|.+..+. +--...|.....+.++|..+.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 35666677777777777777776553221 122333444555555666666655554
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.28 E-value=4.7 Score=17.11 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
|+.+.|..+|+++....+ -+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 456777777777776533 46666665554
No 380
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=77.10 E-value=7.7 Score=20.67 Aligned_cols=50 Identities=6% Similarity=0.010 Sum_probs=30.0
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 74 (176)
.|+...++.++..+++..-.++++..+.+..+.|. .+..+|---++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555666777777777777777777777776664 355555555554443
No 381
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=76.35 E-value=26 Score=25.30 Aligned_cols=45 Identities=4% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.++|+.|...++.|.-.+|.-+.-.+.+.=.+..++.+|+.+...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 456777777777777777666666666666667777777766543
No 382
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.90 E-value=6.4 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=14.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCC
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQ 57 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~ 57 (176)
++++.+.+..-.++|+++.+.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 44555555555566666666665554
No 383
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.20 E-value=3.2 Score=30.07 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=61.8
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh-hHHHHHHHHHhcCCHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~ 82 (176)
..|.+++|++.|...++.+ ++....|..--.++.+.+++..|+.=+...... .||.. -|-.=-.+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4677888888887777664 446666667777788888888888777766654 33322 2222223345567888888
Q ss_pred HHHHHHHhcCCCCcHHHH
Q 030489 83 MMFSKMLEKGPKANVVTY 100 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~ 100 (176)
..|....+.+..+....|
T Consensus 203 ~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHhccccHHHHHH
Confidence 888888877766555444
No 384
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=75.05 E-value=3.3 Score=30.96 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=41.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCC---ccHHHHHHHHHHHHhCCChhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLE---PDIITYNTIICGYCSLNRLDEAVQLFE 51 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~ 51 (176)
+|+.|+.+....+|+...+.|.. .-...|..|-++|.-.+++++|+++..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 57899999999999999988743 234567888899999999999999874
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.87 E-value=13 Score=21.18 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 030489 72 FCKEGRMDDATMMFSKML 89 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~ 89 (176)
....|++++|.+.+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344445555554444443
No 386
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.66 E-value=42 Score=26.77 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=90.1
Q ss_pred hHHHHHHHHHh-hCCCCcc--HHHHHHHHHHHH-hCCChhHHHHHHHHHHhCCCCcChh-----hHHHHHHHHHhcCCHH
Q 030489 9 DAALKLFGQLT-DRGLEPD--IITYNTIICGYC-SLNRLDEAVQLFEKLTCVQLKPNSI-----TFTILIDAFCKEGRMD 79 (176)
Q Consensus 9 ~~a~~~~~~~~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~ll~~~~~~~~~~ 79 (176)
..|+.+++-+. +..++|. ..++-.+...+. ...+++.|+..+.+.....-.++.. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34567777766 3344443 345556666665 7788999999998764432222211 1234556666666655
Q ss_pred HHHHHHHHHHhcC----CCCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------------CChH
Q 030489 80 DATMMFSKMLEKG----PKANVVTYSCL-IDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------------GRPT 137 (176)
Q Consensus 80 ~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------------~~~~ 137 (176)
|...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+.......... +..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888766432 22334444444 333334479999999998876533212221 5566
Q ss_pred HHHHHHHHHHHCC---------CCCcHHHHHHHHHHhhc
Q 030489 138 EAMQLYDSMLRNG---------IMPDGLLLSTLADYNLQ 167 (176)
Q Consensus 138 ~a~~~~~~m~~~g---------~~p~~~~~~~l~~~~~~ 167 (176)
.+++..+++.... -.|...++..+++.++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~ 235 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCS 235 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHH
Confidence 6777666664211 13455566666665554
No 387
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=74.61 E-value=40 Score=27.39 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC--CCCcChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITFTILIDAFCKEGRMD------DATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
+|+.+|...|++..+.++++..... |-+.=...+|..++...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888888888888888877654 32333455777777777777653 3444444443 33355566555
Q ss_pred HHH
Q 030489 104 IDG 106 (176)
Q Consensus 104 ~~~ 106 (176)
+.+
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 443
No 388
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.12 E-value=27 Score=24.29 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=31.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHH---HH-HHHHh--cCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 73 CKEGRMDDATMMFSKMLEKGPKANVVTYSC---LI-DGYFK--SQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~-~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
+..+++.+|+.+|+++.......+.--|.. ++ .++|. ..+.-.+...+++-.+..+.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 556778888888888876655444333322 11 11111 245555555555554444443333
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.01 E-value=16 Score=21.68 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666655
No 390
>PRK09857 putative transposase; Provisional
Probab=73.44 E-value=31 Score=24.67 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 131 (176)
+..++....+.++.+...++++.+.+. .+........+..-+.+.|.-++++++..+|...|....
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455665556667777677777777665 333444555667777777777788888888888877644
No 391
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=73.33 E-value=9.4 Score=22.89 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
..++......+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 356677777777888899999999888888888777777777777643
No 392
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=73.17 E-value=11 Score=20.80 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=3.3
Q ss_pred HHHhcCCH
Q 030489 71 AFCKEGRM 78 (176)
Q Consensus 71 ~~~~~~~~ 78 (176)
..+..|+.
T Consensus 32 ~A~~~~~~ 39 (89)
T PF12796_consen 32 YAAENGNL 39 (89)
T ss_dssp HHHHTTTH
T ss_pred HHHHcCCH
Confidence 33344443
No 393
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.14 E-value=17 Score=21.68 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 030489 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 42 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
..++|..+.+.+.+.+.. ...+--+-+..+.+.|++++| +..- .....||...|-.|-. .+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLP-QCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHH-TTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhc-ccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345555555555554321 112222223344555555555 1111 1123345555544333 24455555544444
Q ss_pred HH
Q 030489 122 EM 123 (176)
Q Consensus 122 ~m 123 (176)
++
T Consensus 94 rl 95 (116)
T PF09477_consen 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 394
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.03 E-value=46 Score=26.60 Aligned_cols=77 Identities=18% Similarity=0.121 Sum_probs=38.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------C
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------G 134 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~ 134 (176)
+..-|..|-++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|...... |
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g 735 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSG 735 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcC
Confidence 344455666666666666666665554332 2234444444455444433333333333222211 7
Q ss_pred ChHHHHHHHHHH
Q 030489 135 RPTEAMQLYDSM 146 (176)
Q Consensus 135 ~~~~a~~~~~~m 146 (176)
+++++.+++.+-
T Consensus 736 ~~~~C~~lLi~t 747 (794)
T KOG0276|consen 736 DYEECLELLIST 747 (794)
T ss_pred CHHHHHHHHHhc
Confidence 777777766443
No 395
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.93 E-value=32 Score=24.71 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=40.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhH-------HHHHHHHHhcCCHHHHHHH
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF-------TILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~ll~~~~~~~~~~~a~~~ 84 (176)
-+.+-..+.+++++|+.+|.+....|+..|..+. .-+...|...|+....-+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3455567889999999999999999988776554 4577888888887654443
No 396
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.57 E-value=34 Score=24.77 Aligned_cols=141 Identities=10% Similarity=0.086 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh---cCCHHHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK---EGRMDDATMM 84 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~ 84 (176)
.+.-+.++++..+.+ +-+...+-..|..+.+..+.++..+-|+++...... +...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 456778888888775 357888889999999999999999999999887433 67778777766543 2346666666
Q ss_pred HHHHHh------cCC----CCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCCC--CChHHHHHHHH
Q 030489 85 FSKMLE------KGP----KAN-------VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI-SPNIA--GRPTEAMQLYD 144 (176)
Q Consensus 85 ~~~~~~------~~~----~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~--~~~~~a~~~~~ 144 (176)
|.+..+ .+. .+. ...+..+...+...|..+.|..+++-+.+.+. .|... ......++.|+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe 204 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFE 204 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 654432 111 111 12333444555678999999999999888766 33333 22235666666
Q ss_pred HHHHCC
Q 030489 145 SMLRNG 150 (176)
Q Consensus 145 ~m~~~g 150 (176)
..=+.+
T Consensus 205 ~FWeS~ 210 (321)
T PF08424_consen 205 EFWESE 210 (321)
T ss_pred HHhCcC
Confidence 554443
No 397
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=72.49 E-value=15 Score=20.82 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
++|+-....|+..|..+|..+++.+...=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555666666666666666666666666666666666643
No 398
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=72.38 E-value=45 Score=26.14 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------
Q 030489 68 LIDAFCKEGRMDDATMMFSKML-EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------- 133 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------- 133 (176)
|+.-|.+.+++++|..++..|. +.-...--...+.+++.+.+..--.+....++.+.-.-..|...
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Q ss_pred --------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCccccCC
Q 030489 134 --------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHCI 176 (176)
Q Consensus 134 --------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 176 (176)
+++++|.-+--++- +...|.-+-......|+..+|.+
T Consensus 494 ~~~aRRfFhhLLR~~rfekAFlLAvdi~------~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 494 SDLARRFFHHLLRYQRFEKAFLLAVDIG------DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc------chHHHHHHHHHHHhccchhhhhc
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=72.09 E-value=18 Score=21.46 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCC--CCChHHHHHHHHHHH
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCEN--NISPNI--AGRPTEAMQLYDSML 147 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~--~~~~~~a~~~~~~m~ 147 (176)
-|..|+..|...|..++|++++.++.+. +-..+. .|....+.++++++-
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~ 93 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLG 93 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCC
Confidence 5889999999999999999999998763 111111 133333366666653
No 400
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.54 E-value=58 Score=26.70 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=10.3
Q ss_pred CChhHHHHHHHHHhhC
Q 030489 6 CHLDAALKLFGQLTDR 21 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~ 21 (176)
|++++|+++|-.+..+
T Consensus 748 g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR 763 (1189)
T ss_pred cchhHhhhhhhccchh
Confidence 5677777777665544
No 401
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.13 E-value=39 Score=24.46 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=91.0
Q ss_pred CccHHHHHHHHHHHHhCCC------------hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 24 EPDIITYNTIICGYCSLNR------------LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~------------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
|-|+.+|-.++..--..-. .+.-+.++++..+.+. -+.......|..+.+..+.++..+-|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5588999888875443322 4566788888777743 46777788889999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH------CCC-CCCCC----------------------CChHHH
Q 030489 92 GPKANVVTYSCLIDGYFK---SQNMKSAFDVYEEMCE------NNI-SPNIA----------------------GRPTEA 139 (176)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~------~~~-~~~~~----------------------~~~~~a 139 (176)
... +...|...+..... .-.+..+..+|.+... .+. ..... |..+.|
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 544 78888888877655 2346677666665422 111 11111 999999
Q ss_pred HHHHHHHHHCCC-CCc
Q 030489 140 MQLYDSMLRNGI-MPD 154 (176)
Q Consensus 140 ~~~~~~m~~~g~-~p~ 154 (176)
..+++-+.+.++ .|.
T Consensus 174 va~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 174 VALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHHcCCcc
Confidence 999999998775 444
No 402
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=70.11 E-value=18 Score=20.58 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
+...|..-++.-...+ .+++ ++|+-....|+..|+..|..+++...-.=-++...+++..|..
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4455554443322222 2333 7888878888888999999888888777778888888888764
No 403
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.00 E-value=29 Score=22.92 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHCCCCC
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ----NMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMP 153 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p 153 (176)
+++|..-|++....++. ...++..+-.+|...+ +..+|...| ++|.++|++..+. .|
T Consensus 51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F----------------~kA~~~FqkAv~~--~P 111 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYF----------------EKATEYFQKAVDE--DP 111 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHH----------------HHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHH----------------HHHHHHHHHHHhc--CC
Confidence 44555556666665544 4577778877776654 344555555 4455577776654 67
Q ss_pred cHHHHHHHHHHhh
Q 030489 154 DGLLLSTLADYNL 166 (176)
Q Consensus 154 ~~~~~~~l~~~~~ 166 (176)
+..+|+.-+....
T Consensus 112 ~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 112 NNELYRKSLEMAA 124 (186)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 7777766665554
No 404
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.86 E-value=50 Score=25.68 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 030489 10 AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG-RMDDATMMFSKM 88 (176)
Q Consensus 10 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~ 88 (176)
+...+|.....+ ++-|+..|...+..+-+.+.+.+.-.+|.+|..... -++..|-.........+ +++.|..+|..-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 344555555443 345899999999988888889999999999987632 24455544444433333 388888888777
Q ss_pred HhcCCCCcHHHHH
Q 030489 89 LEKGPKANVVTYS 101 (176)
Q Consensus 89 ~~~~~~~~~~~~~ 101 (176)
.+.++. ++..|-
T Consensus 167 LR~npd-sp~Lw~ 178 (568)
T KOG2396|consen 167 LRFNPD-SPKLWK 178 (568)
T ss_pred hhcCCC-ChHHHH
Confidence 765543 444443
No 405
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=69.63 E-value=42 Score=24.65 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=51.9
Q ss_pred hCChhHHHHHHHHHhhC---CCCccHHHH--HHHHHHHHhCCChhHHHHHHHHHHh-----CCCCcChhh-HHHHHHHH-
Q 030489 5 ECHLDAALKLFGQLTDR---GLEPDIITY--NTIICGYCSLNRLDEAVQLFEKLTC-----VQLKPNSIT-FTILIDAF- 72 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~-~~~ll~~~- 72 (176)
.++.++|++.++++.+. --.|+...| ..+.+.+...|+..++.+.+.+.++ -+++|++++ |+.+-+-|
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYy 167 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYY 167 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHH
Confidence 45788999999988754 234455555 4666777899999999999998887 678876654 44444333
Q ss_pred HhcCCHHH
Q 030489 73 CKEGRMDD 80 (176)
Q Consensus 73 ~~~~~~~~ 80 (176)
-+.|++..
T Consensus 168 k~~~d~a~ 175 (380)
T KOG2908|consen 168 KKIGDFAS 175 (380)
T ss_pred HHHHhHHH
Confidence 44455433
No 406
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.61 E-value=17 Score=19.67 Aligned_cols=42 Identities=5% Similarity=-0.049 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 030489 12 LKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL 53 (176)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 53 (176)
.+.++.-.+.+++.|......++....+.-.-.+..++++.|
T Consensus 26 rk~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 26 RKQMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 333333333444444444444444433333333444444433
No 407
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.41 E-value=34 Score=29.42 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 030489 102 CLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~ 122 (176)
.|+.-+...+++-+|-++..+
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHH
Confidence 344444455555544444444
No 408
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=68.17 E-value=18 Score=27.25 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 41 NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 41 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
+.+++.+++++.+...| .+|.-+. -+++|.+.+++++|...+++=.+.
T Consensus 29 ~~~~~~i~lL~~l~~~g-~~d~lp~--TiDSyTR~n~y~~A~~~l~~s~~~ 76 (441)
T PF06368_consen 29 ALPEEMIELLQYLRDEG-GADVLPL--TIDSYTRQNDYEEAERGLEESIET 76 (441)
T ss_dssp SSHHHHHHHHHHHHHTT---SSEEE--EB-HHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-CCCeece--eeecccccccHHHHHHHHHhchhc
Confidence 34677777777777664 2243333 378888888888888888776663
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.92 E-value=32 Score=27.36 Aligned_cols=88 Identities=14% Similarity=0.207 Sum_probs=57.1
Q ss_pred HhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 030489 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117 (176)
Q Consensus 38 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 117 (176)
.-.|+...|.+.+...........-+..-.|.....+.|....|..++.+...... ...-++-.+-.+|....+.++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHH
Confidence 34667777777776655432222223334455566666777778888777665542 25556777788888888999999
Q ss_pred HHHHHHHHC
Q 030489 118 DVYEEMCEN 126 (176)
Q Consensus 118 ~~~~~m~~~ 126 (176)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 998887654
No 410
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=67.75 E-value=54 Score=25.20 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC---CcHHHHHHHHHHH-----
Q 030489 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG------PK---ANVVTYSCLIDGY----- 107 (176)
Q Consensus 42 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~---~~~~~~~~l~~~~----- 107 (176)
.+++-+++++.+.+.| .+| .....+++|.+.+++++|...+++=.+.| ++ ....+...++...
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4678888888888775 234 34455899999999999999998776532 21 1223333344333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCC
Q 030489 108 FKSQNMKSAFDVYEEMCENNISPNI 132 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m~~~~~~~~~ 132 (176)
.++|.+ .+..+++-+...|+....
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~E 169 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFE 169 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccC
Confidence 233433 456677777666664443
No 411
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.59 E-value=17 Score=19.37 Aligned_cols=51 Identities=10% Similarity=0.223 Sum_probs=40.5
Q ss_pred CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 59 KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
.|+...++-++..+++..-.+.++..+.+..+.|. .+..+|-.-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 46667788899999998889999999999998876 4788888777777764
No 412
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.43 E-value=49 Score=24.63 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=29.4
Q ss_pred HHHHhhCCCCccHHH--HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh--hHHHHHHHHHhcCCHHHHHHHH
Q 030489 15 FGQLTDRGLEPDIIT--YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI--TFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 15 ~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
++.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 344445565554422 2344444555666543 33344445444322 1122334444555555444433
No 413
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=66.96 E-value=23 Score=20.76 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=23.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhCC
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR--LDEAVQLFEKLTCVQ 57 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~ 57 (176)
...|+.++|...+.++... .--......++..+...++ -+.+..++..+.+.+
T Consensus 13 ~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 13 FSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 3456666666666664321 1123333444444444321 233444445555444
No 414
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.30 E-value=25 Score=20.81 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=58.3
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 86 (176)
..++|..+-+.+...+-. ...+--.-+..+.+.|++++|..+.+.+ ..||...|-.|.. .+.|..+++..-+-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 457788887777765422 2222223445577999999999888665 4789888877655 56677777777777
Q ss_pred HHHhcCCCCcHHHHH
Q 030489 87 KMLEKGPKANVVTYS 101 (176)
Q Consensus 87 ~~~~~~~~~~~~~~~ 101 (176)
.|...|- |....|.
T Consensus 93 rla~sg~-p~lq~Fa 106 (115)
T TIGR02508 93 RLAASGD-PRLQTFV 106 (115)
T ss_pred HHHhCCC-HHHHHHH
Confidence 7777653 4554443
No 415
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=65.49 E-value=52 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
|-.+.......|.++.++.+|++.+..|-.|-...-..+++.+
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3344444455555555555555555555554444444444443
No 416
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.37 E-value=62 Score=30.28 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=64.5
Q ss_pred hhCChhHHHHHHHHH----hhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH
Q 030489 4 KECHLDAALKLFGQL----TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 79 (176)
+++.+.+|.-.|+.- .+. ......|..+...|+..++++.+..+...-.. +.. ...-|.-....|++.
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEASGNWA 1466 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHhhccHH
Confidence 456677777777762 211 22344555556688888888887777764111 222 233445556678888
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
.|..-|+.+.+.+.+ ...+++-++......|.+..+...
T Consensus 1467 da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~ 1505 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILH 1505 (2382)
T ss_pred HHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhh
Confidence 888888888876533 466666666655556665555443
No 417
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=64.70 E-value=48 Score=23.59 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE-----KGPKANVVTYS 101 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 101 (176)
...-..-+..+...|++..|++++.+..+.- . +..-|+.+=..- .++++.....+++.+ .-...|+..|.
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~ 201 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKYS 201 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3344456667778888999988887766430 0 111111111111 112222222222211 11246888999
Q ss_pred HHHHHHHhcCCHHHHH
Q 030489 102 CLIDGYFKSQNMKSAF 117 (176)
Q Consensus 102 ~l~~~~~~~g~~~~a~ 117 (176)
.++.+|.-.|+...+.
T Consensus 202 ~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 202 KVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHhhhHHHH
Confidence 9999999999866654
No 418
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=64.57 E-value=19 Score=18.90 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=28.6
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHH-----HhcCCHHHHHHHH
Q 030489 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF-----CKEGRMDDATMMF 85 (176)
Q Consensus 37 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~ 85 (176)
+.+.|++-+|-++++.+=.....+....+..||... .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 446777888888887766443333555555555543 4567777666553
No 419
>PRK09857 putative transposase; Provisional
Probab=64.51 E-value=50 Score=23.64 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHHCCCCCc
Q 030489 134 GRPTEAMQLYDSMLRNGIMPD 154 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~ 154 (176)
|..++++++..+|...|+.++
T Consensus 254 G~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 254 GEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHcCCCHH
Confidence 445667888888888887655
No 420
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.34 E-value=15 Score=29.68 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 030489 98 VTYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
..|+.+...++....|++|.+.|.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444
No 421
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=64.30 E-value=51 Score=23.70 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP---NSITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 25 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
....+|..+...+.+.|.++.|...+..+...+... ++.....-.+..-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778899999999999999999999888754222 344555556777888999999998888776
No 422
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.15 E-value=35 Score=26.53 Aligned_cols=106 Identities=20% Similarity=0.092 Sum_probs=68.1
Q ss_pred hhCChhHHHHHHHHHh---hCCCCcc-----HHHHHHHHHHHHhCCChhHHHHHHHHHH-------hCCCCcCh------
Q 030489 4 KECHLDAALKLFGQLT---DRGLEPD-----IITYNTIICGYCSLNRLDEAVQLFEKLT-------CVQLKPNS------ 62 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~------ 62 (176)
-.|++.+|.+++...- +.|...+ -..||.+...+.+.|.+.-+..+|.... ..|++|..
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 3578888888875542 2232222 2334666666667777666655555444 35655432
Q ss_pred -hhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 63 -ITF---TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 63 -~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
..+ ...--.|...|++-.|.+-|.+..+. +..++..|-.|.++|...
T Consensus 332 nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 332 NKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 111 12334577889999999999998876 556899999999999654
No 423
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=63.29 E-value=47 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=28.1
Q ss_pred CCcc-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 030489 23 LEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57 (176)
Q Consensus 23 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 57 (176)
+.|+ +.+||.+.-.+...|+++.|.+.|+...+-.
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 3444 6788888888889999999999998887653
No 424
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=63.19 E-value=43 Score=22.43 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLT 54 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~ 54 (176)
.-+...+-.....|++++|.+-++.+.
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444555666666666665554
No 425
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=62.56 E-value=86 Score=25.71 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=41.5
Q ss_pred hCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------CCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 030489 55 CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP-------------KANVVTYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 55 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
+.|+..+......|+... .|++..+..+++++...|. ..+......|++++.+ ++...++.+++
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~ 269 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQ 269 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 346666666666555543 4777777777776554221 1122233344444433 67777777777
Q ss_pred HHHHCCCCCC
Q 030489 122 EMCENNISPN 131 (176)
Q Consensus 122 ~m~~~~~~~~ 131 (176)
++...|..+.
T Consensus 270 ~L~~~G~d~~ 279 (709)
T PRK08691 270 EMAACAVGFD 279 (709)
T ss_pred HHHHhCCCHH
Confidence 7766665444
No 426
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.37 E-value=1.1e+02 Score=28.88 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=59.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCC--CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (176)
++..+-.+.+.+.+|+..+++-...- .......|..+...|+..+++|...-+...... +...++ -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 45566778888999988888731111 012344455666689999999888777664211 222333 3344467
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 030489 110 SQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 110 ~g~~~~a~~~~~~m~~~~~~ 129 (176)
.|+|..|...|+.+.+.+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~ 1481 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD 1481 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc
Confidence 88999999999998765443
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.85 E-value=65 Score=24.06 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=24.4
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHH--HHHHHHHHH--HhCCChhHHHHHHHHHHh
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDII--TYNTIICGY--CSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~--~~~~~~~~a~~~~~~m~~ 55 (176)
+.+++..|.++|+.+... ++++.. .+..+..+| ...-++.+|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556666666665554 333332 333333333 234455555555555443
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.68 E-value=89 Score=25.59 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCCHH
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
+|+.+|...|++-.+.++++.+... |-+.-...||..|.-..+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 7999999999999999999998854 34445667888899999999764
No 429
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=61.43 E-value=75 Score=27.13 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=46.5
Q ss_pred HhCCChhHHHHHHHHHHhCCCCcChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHH
Q 030489 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFT-ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTY 100 (176)
Q Consensus 38 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (176)
-....+.+++++|..|.+.|+.+....|. ..-..+.+.+.+.+|..+|+.-++..-.|-...-
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~ 152 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLL 152 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 35667889999999999988877666554 4446677888899999998887766556554443
No 430
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.00 E-value=34 Score=20.51 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 86 (176)
..++|..+.+.+...+.. ...+--.-+..+.+.|++++|+. . ......||...|-+|. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl---~-~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALL---L-PQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHH---H-HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHH---h-cccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 568899999999887642 33333345556789999999922 1 2333467877777554 468899999999998
Q ss_pred HHHhcCCCCcHHHH
Q 030489 87 KMLEKGPKANVVTY 100 (176)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (176)
.+...|- |....|
T Consensus 94 rla~~g~-~~~q~F 106 (116)
T PF09477_consen 94 RLASSGS-PELQAF 106 (116)
T ss_dssp HHCT-SS-HHHHHH
T ss_pred HHHhCCC-HHHHHH
Confidence 8876653 344444
No 431
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.53 E-value=31 Score=26.77 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=64.1
Q ss_pred HHhcCCHHHHHHHHHHHH---hcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCCCC---
Q 030489 72 FCKEGRMDDATMMFSKML---EKGPKAN-----VVTYSCLIDGYFKSQNMKSAFDVYEEMC-------ENNISPNIA--- 133 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~~--- 133 (176)
+...|++.+|.+++-..- ..|...+ -..||.|-....+.|.+..+..+|.... ..|..|...
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 456788888888775432 2232222 1234666666677777777777776554 346555443
Q ss_pred -------------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcc
Q 030489 134 -------------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168 (176)
Q Consensus 134 -------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 168 (176)
|++-.|.++|.+..+- +..++..|..+..+|+..
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 9999999999988743 566788999998888753
No 432
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.44 E-value=1.2e+02 Score=26.64 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=75.5
Q ss_pred CchhhCChhHHHHHHHHHhhC-----------------------CCCcc-----HHHHHHHHHHHHhCCChhHHHHHHHH
Q 030489 1 MLIKECHLDAALKLFGQLTDR-----------------------GLEPD-----IITYNTIICGYCSLNRLDEAVQLFEK 52 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~ 52 (176)
+|...|+.-+|+.+|.+.... |-.|. .+-|-.+++.+-+.+..+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 366778888888888765432 11111 22244555555566666666665554
Q ss_pred HHhCC-C-CcC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 030489 53 LTCVQ-L-KPN-SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 53 m~~~~-~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 129 (176)
..+.- . .|+ ..+++.+.+-....|.+-+|.+.+-.--. ..........++..++.+|+++.-.+ +
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~----f------ 1076 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALAT----F------ 1076 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhh----C------
Confidence 44331 0 111 23344555555555555555443322111 11122334445555555555543221 1
Q ss_pred CCCCCChHHHHH-HHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 130 PNIAGRPTEAMQ-LYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 130 ~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
...|.-++... +++..-+....-....|+.|...+...+++..|
T Consensus 1077 -pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rka 1121 (1480)
T KOG4521|consen 1077 -PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKA 1121 (1480)
T ss_pred -CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHH
Confidence 11144445555 333333332223344566666666666666554
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.43 E-value=30 Score=19.72 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=31.8
Q ss_pred HHhcCCHHHHHHHHHHHH----hcCCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 72 FCKEGRMDDATMMFSKML----EKGPKA----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~----~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
..+.|++..|.+.+.+.. ..+... -....-.+.......|++++|...+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777755544443 222221 122233345566778999999999987654
No 434
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.12 E-value=63 Score=23.36 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCcHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKML----EKGPKANVVTYSC-LIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
-...+..+...|++.++.+.+.++.++.. ..|.+.|+...-+ |...|....-.++-++..+.|.+.|......
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 34566778888999888888887776554 3455544433222 2223333344666777777777777665555
No 435
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=60.06 E-value=36 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=11.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 030489 69 IDAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
++.+.++...++|+++.+-|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 334444445555555555555444
No 436
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=60.01 E-value=30 Score=21.76 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=31.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
++..+.+.|-..+...++++|++.|+..+...|+.++.-.
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3444556788888889999999999998988888877643
No 437
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.89 E-value=57 Score=22.82 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=53.0
Q ss_pred hCChhHHHHHHHHHhhCCCCccH-HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHH-HHHHhcCCHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDI-ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI-DAFCKEGRMDDAT 82 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~ 82 (176)
..+++.|...|.+.... .|+. .-|+.=+..+.+..+|+.+..=-....+ +.||..--...+ .+......++.|+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 34555666655444433 3443 3334444555556666665554444333 244444333333 3344455556666
Q ss_pred HHHHHHH----hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 83 MMFSKML----EKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 83 ~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
..+.+.. +..+.+-...+..|..+--+.-...+..++.++
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 5555442 233444444455554444333344444444443
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.53 E-value=56 Score=22.59 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+|...|...... ......--.+..-|.+.|++++|.++|+.+.
T Consensus 163 ~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 163 KAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444443331 1233334456778888889999998888774
No 439
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.53 E-value=58 Score=22.79 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=50.4
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCcCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCCHH
Q 030489 37 YCSLNRLDEAVQLFEKLTCVQLKPNS-ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV-TYSCLIDGYFKSQNMK 114 (176)
Q Consensus 37 ~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 114 (176)
|....+++.|+..|.+... +.|++ .-|+.=+.++.+..+++.+..=-...++. .|+.. ..-.+-.+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 5556677777776655444 35666 34455666777777777776655555543 34433 3334445556667777
Q ss_pred HHHHHHHHH
Q 030489 115 SAFDVYEEM 123 (176)
Q Consensus 115 ~a~~~~~~m 123 (176)
.|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 777777766
No 440
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=59.27 E-value=19 Score=20.87 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=30.7
Q ss_pred HhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 030489 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96 (176)
Q Consensus 38 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 96 (176)
.+..+...+..+|..+.+.|.- +...+.-+...+...++.+-- ..+..=++..+.|+
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gll-~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~ 91 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGRC-DETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPD 91 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCc
Confidence 3445567777788777777654 443444555555555555543 33333333334443
No 441
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=59.17 E-value=74 Score=23.87 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCCC----
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEK-----GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE----NNISPNIA---- 133 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~---- 133 (176)
++-.++...+.++++.+.|+...+. +......+|-.|-+.|.+..|++++.-+..+..+ .++..+..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 4556677777788888888876532 2223445778888888888888888777665432 22222222
Q ss_pred -------------CChHHHHHHHHHHH----HCCCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 134 -------------GRPTEAMQLYDSML----RNGIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 -------------~~~~~a~~~~~~m~----~~g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
|..-.|.+.-++.. +.|-+|. ......+.+.|...|+.+.|
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 55555555554443 3343332 22344556666666766544
No 442
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=59.15 E-value=31 Score=19.46 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 030489 98 VTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
.|...|+.++.+.|.-+-|.++
T Consensus 64 AT~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 64 ATPETLITALNAAGLNEIAESL 85 (86)
T ss_pred ccHHHHHHHHHHcCcHHHHHhh
Confidence 3455555555555544444433
No 443
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.08 E-value=32 Score=19.60 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
|...--.+...+...|++++|++.+-.+...
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444444444555555555555555544443
No 444
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.53 E-value=90 Score=24.64 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 57 (176)
++.-.+.+-.+|.+-| -+...|..++..|... ..++-..+|+++.+..
T Consensus 81 k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d 128 (711)
T COG1747 81 KNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD 128 (711)
T ss_pred HHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc
Confidence 3444555555665543 3566677777777666 4555666666665543
No 445
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.52 E-value=44 Score=21.04 Aligned_cols=68 Identities=10% Similarity=0.183 Sum_probs=45.4
Q ss_pred CcChhhHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 59 KPNSITFTILIDAFCKEG---RMDDATMMFSKMLE-KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.++..+-..+.-++.++. +..+.+.+++++.+ ....-.......|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445555555555666554 45667788888876 333333344455667888999999999999888764
No 446
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=57.54 E-value=31 Score=18.97 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
.+.|..++..+.... +.++..||++-..+.++
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 455556666655443 23566666666555444
No 447
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.52 E-value=76 Score=23.51 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=41.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHH-hCCChhHHHHHHHHHHh
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYC-SLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~ 55 (176)
+.+.|-+..|+++.+.+..-.+.-|+.....+|+.|+ +.++++-.+++++....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4678889999999988888765557777777888776 67778878888877654
No 448
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.45 E-value=1e+02 Score=25.03 Aligned_cols=84 Identities=15% Similarity=0.287 Sum_probs=54.3
Q ss_pred hhCChhHHHHHHHHHhhCCCCcc------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC
Q 030489 4 KECHLDAALKLFGQLTDRGLEPD------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 77 (176)
+..++..+.+.|..-... ++.| ......+-.+|.+..+.++|.+++.+..+... .++.+--.+..+....|.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhcc
Confidence 345666777777655443 1222 23345666667788889999999988887642 245555556677777888
Q ss_pred HHHHHHHHHHHH
Q 030489 78 MDDATMMFSKML 89 (176)
Q Consensus 78 ~~~a~~~~~~~~ 89 (176)
.++|........
T Consensus 444 Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 444 SEEALTCLQKIK 455 (872)
T ss_pred hHHHHHHHHHHH
Confidence 888877766554
No 449
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.18 E-value=58 Score=22.06 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=57.2
Q ss_pred chhhCChhHHHHHHHHHhhC----CCCccH--HHHHHHHHHHHhCCCh-------hHHHHHHHHHHhCCCCc----Ch-h
Q 030489 2 LIKECHLDAALKLFGQLTDR----GLEPDI--ITYNTIICGYCSLNRL-------DEAVQLFEKLTCVQLKP----NS-I 63 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~~~~~--~~~~~ll~~~~~~~~~-------~~a~~~~~~m~~~~~~~----~~-~ 63 (176)
|.....+++|.+.|....-. +.+|.. ..+-.+.-.|-..|+. ..|.+.|.+..+..-.| +. .
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 34556778888877765422 334443 3444555556666663 45666666655442221 22 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (176)
....+.....+.|+.++|.+.|..+...+-.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3334456678999999999999999976543
No 450
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=56.84 E-value=62 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=15.1
Q ss_pred chhhCChhHHHHHHHHHhh
Q 030489 2 LIKECHLDAALKLFGQLTD 20 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~ 20 (176)
+.+.|++++|.+++....+
T Consensus 15 l~K~~~yeeAkqvL~yFs~ 33 (233)
T TIGR02878 15 LTKQARYEEAKQVLEYFSK 33 (233)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 4688999999998876654
No 451
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=56.77 E-value=98 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHHH
Q 030489 106 GYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~ 122 (176)
.|++...|++|+.+...
T Consensus 1035 ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1035 LLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHhhHhHHHHHHHHHHh
Confidence 33444456666555543
No 452
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=56.41 E-value=20 Score=19.45 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
++.+.+.+++++..+.|.+|.......+..+.
T Consensus 15 ~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 15 GDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp T-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444444444444444443333333333333
No 453
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.32 E-value=76 Score=23.14 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=33.0
Q ss_pred hhHHHHHH-HHHhhCCCCcc---HHHHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 8 LDAALKLF-GQLTDRGLEPD---IITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 8 ~~~a~~~~-~~~~~~~~~~~---~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
+++..... ++|...++|-+ ...|..+|++---+.+ -.-|.+.++.+ -+|.-|+.+++..|+.+-..
T Consensus 271 ~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 271 VKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 34433333 34444444322 2456676666433322 11233333333 35777888888888776543
No 454
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.27 E-value=40 Score=19.90 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 47 VQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 47 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
.+.+++....+....+....-|-..|.+.|+.+.|.+-|+.=+..
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 344444444433322233333445566777777777777654443
No 455
>PRK13342 recombination factor protein RarA; Reviewed
Probab=55.99 E-value=86 Score=23.64 Aligned_cols=101 Identities=20% Similarity=0.130 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhh---CCC-CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc------------------ChhhHH
Q 030489 9 DAALKLFGQLTD---RGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP------------------NSITFT 66 (176)
Q Consensus 9 ~~a~~~~~~~~~---~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------------------~~~~~~ 66 (176)
++...+++.... .|+ ..+......++..+ .|+...++.+++.....+... +...+.
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~ 231 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHY 231 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHH
Confidence 455566655542 243 55666666665543 678888877777653221111 112344
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 030489 67 ILIDAFCK---EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (176)
Q Consensus 67 ~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (176)
.+++++.+ ..+.+.|..++..|.+.|.+|....-..++.++-..|
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 45555554 4788889999999998887766555554444543333
No 456
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=55.93 E-value=60 Score=21.81 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCV 56 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 56 (176)
...+.++..|...|+++.|-+.|.-+.+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 34556666666677777777666666654
No 457
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.87 E-value=98 Score=24.25 Aligned_cols=75 Identities=11% Similarity=0.159 Sum_probs=49.9
Q ss_pred hhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-C------------cChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 19 TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-K------------PNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 19 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~------------~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
.+.|+..+......++... .|+...|+.++++....|- . ++......++++.. .++.+.+..++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 4567777777776666553 5888899888887665431 1 12233333444444 48888899999
Q ss_pred HHHHhcCCCCc
Q 030489 86 SKMLEKGPKAN 96 (176)
Q Consensus 86 ~~~~~~~~~~~ 96 (176)
+++...|..|.
T Consensus 269 ~~l~~~g~~~~ 279 (509)
T PRK14958 269 TRLVEQGVDFS 279 (509)
T ss_pred HHHHHcCCCHH
Confidence 99998887764
No 458
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.70 E-value=75 Score=24.48 Aligned_cols=90 Identities=19% Similarity=0.095 Sum_probs=60.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTIL-IDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (176)
-.+-..+.+.++.|+.+|.+..+. .||...|... ..++.+.+++..|..=+...++..+. ....|-.=..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 345566788899999999998875 5665555433 37889999999998888888776532 3333333334455555
Q ss_pred CHHHHHHHHHHHHH
Q 030489 112 NMKSAFDVYEEMCE 125 (176)
Q Consensus 112 ~~~~a~~~~~~m~~ 125 (176)
.+.+|+..|+....
T Consensus 87 ~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666665543
No 459
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.53 E-value=66 Score=22.18 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 59 (176)
+..+|--+...|+++.|+++.....++|.+
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 444444566888899999999998888754
No 460
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=55.44 E-value=1.2e+02 Score=25.30 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=37.4
Q ss_pred CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 57 QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG-------------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 57 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
|+..+......+.. ...|++..|+.++++....+ -.++...+..+++++ ..++..+++.+++++
T Consensus 195 gI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~~d~~~~l~~~~~l 271 (830)
T PRK07003 195 RIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AAGDGPEILAVADEM 271 (830)
T ss_pred CCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 44444444433333 33567777777766544321 012333444445543 336777777777777
Q ss_pred HHCCCCCC
Q 030489 124 CENNISPN 131 (176)
Q Consensus 124 ~~~~~~~~ 131 (176)
...|..+.
T Consensus 272 ~~~g~~~~ 279 (830)
T PRK07003 272 ALRSLSFS 279 (830)
T ss_pred HHhCCCHH
Confidence 66555433
No 461
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=55.10 E-value=37 Score=21.35 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=31.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHH
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF 72 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 72 (176)
+..+-+.|-..+...++++|.+.|+..+...|+.++.-.
T Consensus 116 L~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 116 LALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 334457788899999999999999999999998877643
No 462
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.42 E-value=28 Score=17.61 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=12.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhC
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCV 56 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~ 56 (176)
+.-++.+.|++++|.+..+.+.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334455555555555555555543
No 463
>PRK00523 hypothetical protein; Provisional
Probab=54.41 E-value=35 Score=18.63 Aligned_cols=43 Identities=5% Similarity=0.036 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 46 AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88 (176)
Q Consensus 46 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 88 (176)
|...++.-.+.+.+.|......++..-++.-.-.+..++.+.|
T Consensus 26 ark~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 26 SKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3344444444444444444444444444443344444444444
No 464
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=54.04 E-value=83 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=18.2
Q ss_pred HHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 53 LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 53 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
..+.|+..+......|+..+. |+...+..-++++.
T Consensus 153 ~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~ 187 (334)
T COG1466 153 AKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLA 187 (334)
T ss_pred HHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHH
Confidence 344455556665555555544 55555544444444
No 465
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=53.90 E-value=17 Score=22.27 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=18.3
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITY 30 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~ 30 (176)
.|+...|.++++.+..+|..|....|
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHH
Confidence 57888888888888888888766655
No 466
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=53.47 E-value=1.3e+02 Score=25.12 Aligned_cols=84 Identities=8% Similarity=0.124 Sum_probs=53.1
Q ss_pred hHHHHHHHHHh-hCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC---C----------CcChhhHHHHHHHHHh
Q 030489 9 DAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---L----------KPNSITFTILIDAFCK 74 (176)
Q Consensus 9 ~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~----------~~~~~~~~~ll~~~~~ 74 (176)
++..+.++.+. +.|+..+......+... ..|+...++.++++....+ + .+|...+..++.++ .
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-A 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 34455555554 45677677776666553 4788999999887755432 1 12333344445544 4
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 030489 75 EGRMDDATMMFSKMLEKGPKA 95 (176)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~ 95 (176)
.++..+++.+++++...|..+
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 488899999999998887753
No 467
>COG0819 TenA Putative transcription activator [Transcription]
Probab=53.26 E-value=70 Score=21.82 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHHhCCChhHH
Q 030489 22 GLEPDIITYNTIICGYCSLNRLDEA 46 (176)
Q Consensus 22 ~~~~~~~~~~~ll~~~~~~~~~~~a 46 (176)
...|....|+..|...+..|++.+.
T Consensus 104 ~~~~~~~aYt~ym~~~~~~g~~~~~ 128 (218)
T COG0819 104 EPSPANKAYTRYLLDTAYSGSFAEL 128 (218)
T ss_pred CCCchHHHHHHHHHHHHhcCCHHHH
Confidence 3455566666666666666665543
No 468
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.24 E-value=1.1e+02 Score=23.98 Aligned_cols=85 Identities=11% Similarity=0.190 Sum_probs=47.7
Q ss_pred HHHHHHHH-HHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------------cHHHHHHHHHHHHhcC
Q 030489 45 EAVQLFEK-LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA------------NVVTYSCLIDGYFKSQ 111 (176)
Q Consensus 45 ~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g 111 (176)
+..+.+.. +.+.|+..+......++... .|++..+...++.+...+... .......+++++ ..+
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~ 255 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQG 255 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcC
Confidence 33444433 23456666666655555433 477777777777765433111 122233345554 457
Q ss_pred CHHHHHHHHHHHHHCCCCCCC
Q 030489 112 NMKSAFDVYEEMCENNISPNI 132 (176)
Q Consensus 112 ~~~~a~~~~~~m~~~~~~~~~ 132 (176)
++.+|+.++.++...|..|..
T Consensus 256 d~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 256 DAAEALSGAAQLYRDGFAART 276 (504)
T ss_pred CHHHHHHHHHHHHHcCCCHHH
Confidence 788888888888777655443
No 469
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=52.82 E-value=1.1e+02 Score=23.73 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh-----------cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 42 RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK-----------EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 42 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
++++|+++.+.+.. .-.|...+.-..+ .+.+++-.++++.+.+.|-. | ....-|+.|-+.
T Consensus 29 d~~eav~y~k~~p~------~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~a-d--~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKSIPA------HKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGGA-D--FLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHhCCc------cccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccCC-C--ccceeeeccccc
Confidence 56777777665432 2233333332222 23578888888888877522 3 455668999999
Q ss_pred CCHHHHHHHHHHHHHC
Q 030489 111 QNMKSAFDVYEEMCEN 126 (176)
Q Consensus 111 g~~~~a~~~~~~m~~~ 126 (176)
+++++|...+++-.+.
T Consensus 100 n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 100 NRYDEAAVGIKESIKA 115 (480)
T ss_pred ccHHHHHHHHHhhhhc
Confidence 9999999999877653
No 470
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=52.49 E-value=85 Score=22.55 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=41.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEP---DIITYNTIICGYCSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 55 (176)
+-+.|+++.|...+.++...+... .+.+...-.......|+..+|+..++....
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346899999999999988754222 455556667788899999999999988776
No 471
>PRK10941 hypothetical protein; Provisional
Probab=52.35 E-value=82 Score=22.30 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 62 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
....+.+-.+|.+.++++.|..+.+.+....+. +..-+.--.-.|.+.|.+..|..=++.-.+.-......
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
No 472
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=51.24 E-value=56 Score=23.56 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=24.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC--LIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
..+...+.++.|+..++........|-...|.. +.+.|...|..+-|..+++++.
T Consensus 221 ~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~ 277 (301)
T TIGR03362 221 RALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALD 277 (301)
T ss_pred HHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555666655554322111222222222 2344555566665555555543
No 473
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=50.87 E-value=57 Score=20.07 Aligned_cols=112 Identities=8% Similarity=0.097 Sum_probs=75.5
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHH----HHHh-------
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID----AFCK------- 74 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~----~~~~------- 74 (176)
++..-|.+++..+...+ -+...++.+....-...++++..++....-.|.... +..+. .|-.
T Consensus 3 nNp~IA~~~l~~l~~s~------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl-~~yI~~cI~~ce~~kd~~~q 75 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFL-HMYISNCIKSCESIKDKYMQ 75 (126)
T ss_pred CcHHHHHHHHHHHcCCc------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHH-HHHHHHHHHHHHhhcccccc
Confidence 45566777777766542 277888888888889999999999888765544433 33332 2221
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 75 EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
.....-.-.+++.+.+.++.-....+.-+=..|.+..+..+|..+|+-+.
T Consensus 76 ~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 76 NRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred cchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 11223334556777888877666667777777788888999999998764
No 474
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=50.84 E-value=24 Score=26.86 Aligned_cols=46 Identities=26% Similarity=0.414 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHCCCCCcHH
Q 030489 110 SQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDGL 156 (176)
Q Consensus 110 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 156 (176)
...+++|+++.++-...| .|.+.|-.-.|-+++.++.+.|+.||..
T Consensus 216 a~~ldeAl~~a~~~~~ag-~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 216 AETLDEALALAEEATAAG-EPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred cCCHHHHHHHHHHHHhcC-CceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 467899999888877655 4555555666788889999889988865
No 475
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=50.78 E-value=99 Score=22.80 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCC---hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH
Q 030489 31 NTIICGYCSLNR---LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98 (176)
Q Consensus 31 ~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (176)
+.++..+...++ +-+|+-+++...... +-|...--.++..|...|-...|.+.|..+.-..+..|+-
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL 253 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTL 253 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHh
Confidence 345555545555 446666666665553 3344555567799999999999999998876444444443
No 476
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.77 E-value=1.2e+02 Score=23.78 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 030489 46 AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMC 124 (176)
Q Consensus 46 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~ 124 (176)
...+|+..... +.-|+..|..-+..+-+.+.+.+...+|.+|....+. ++..|-.........+ +++.|..+|..-.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34444444332 4458888888888888888899999999999876543 5556655544444433 3788888877654
Q ss_pred H
Q 030489 125 E 125 (176)
Q Consensus 125 ~ 125 (176)
.
T Consensus 168 R 168 (568)
T KOG2396|consen 168 R 168 (568)
T ss_pred h
Confidence 4
No 477
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=50.32 E-value=41 Score=18.28 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 44 DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 44 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
+.+.+++...... .....|...|+.++.+.|+.+-|..+
T Consensus 41 ~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i 79 (83)
T PF00531_consen 41 EQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKI 79 (83)
T ss_dssp HHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHH
Confidence 4444555444443 23444555566666666655555443
No 478
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=50.29 E-value=22 Score=25.13 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
..++..+.+++..++.+ |++.|=+.+|-+++. ..++..++++.+.+.|+
T Consensus 194 A~Y~~SL~~L~~~k~~~--P~i~TKSgiMlGLGE--t~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 194 ATYERSLSLLERAKELG--PDIPTKSGLMVGLGE--TDEEVIEVMDDLRSAGV 242 (306)
T ss_pred CcHHHHHHHHHHHHHhC--CCcccccceeeecCC--cHHHHHHHHHHHHHcCC
Confidence 35566666666665543 455555555555432 34556666666665555
No 479
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=50.27 E-value=25 Score=15.78 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNT 32 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 32 (176)
.++.|..+|++.... .|++.+|..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 356677777777654 356655543
No 480
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=50.20 E-value=47 Score=26.58 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=0.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCCh------------hHHHHHHHHHHhCCC------CcChh
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL------------DEAVQLFEKLTCVQL------KPNSI 63 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~------------~~a~~~~~~m~~~~~------~~~~~ 63 (176)
+...|++++|..+|....+. ..-....|.++.-....... ..|..+.+.....+. ..+..
T Consensus 424 ~e~~g~~~dAi~Ly~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~ 501 (613)
T PF04097_consen 424 AEERGRFEDAILLYHLAEEY--DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNRE 501 (613)
T ss_dssp HHHCT-HHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHH
Q ss_pred hHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 030489 64 TFTILIDA-----FCKEGRMDDATMMFSKM 88 (176)
Q Consensus 64 ~~~~ll~~-----~~~~~~~~~a~~~~~~~ 88 (176)
|+..|++. +...|+++.|.+.++++
T Consensus 502 t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 502 TFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 481
>COG0819 TenA Putative transcription activator [Transcription]
Probab=49.87 E-value=81 Score=21.54 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCCCcChhhHHHHHHHHHhcCCHHHHH-----------HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 56 VQLKPNSITFTILIDAFCKEGRMDDAT-----------MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 56 ~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
....|....|+.-|...+..|++.... ++...+.+....+....|...++.|+.. ++.++.+.+..+.
T Consensus 103 ~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~-ef~~~v~~~~~~l 181 (218)
T COG0819 103 TEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASE-EFQEAVEELEALL 181 (218)
T ss_pred cCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCH-HHHHHHHHHHHHH
Confidence 344566677888888888888766543 2233334444434566788888888654 3444444444333
Q ss_pred HCCCCCCCCCChHHHHHHHHHHH
Q 030489 125 ENNISPNIAGRPTEAMQLYDSML 147 (176)
Q Consensus 125 ~~~~~~~~~~~~~~a~~~~~~m~ 147 (176)
+.-.......+.++..++|....
T Consensus 182 d~~~~~~~~~~~~~l~~iF~~ss 204 (218)
T COG0819 182 DSLAENSSEEELEKLKQIFLTAS 204 (218)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Confidence 32112222234555555555443
No 482
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=49.81 E-value=1e+02 Score=22.58 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=52.2
Q ss_pred HhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH------------HHHhcCCHHHHHHHHH
Q 030489 54 TCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID------------GYFKSQNMKSAFDVYE 121 (176)
Q Consensus 54 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g~~~~a~~~~~ 121 (176)
.+.|+.-|...+..++. ...|++..|+..++.+...|-..+...-+.++. -.+..+++....+..+
T Consensus 202 ~~E~v~~d~~al~~I~~--~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~R 279 (346)
T KOG0989|consen 202 SKEGVDIDDDALKLIAK--ISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVR 279 (346)
T ss_pred HHhCCCCCHHHHHHHHH--HcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHHH
Confidence 35678888888887776 456899999999999887655544333333332 2356678888888888
Q ss_pred HHHHCCCCCC
Q 030489 122 EMCENNISPN 131 (176)
Q Consensus 122 ~m~~~~~~~~ 131 (176)
++...|..|-
T Consensus 280 ei~~sg~~~~ 289 (346)
T KOG0989|consen 280 EIMRSGYSPL 289 (346)
T ss_pred HHHHhccCHH
Confidence 7777766553
No 483
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=49.64 E-value=5.5 Score=31.01 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCccHHHH-HHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHH--HHhcCCHHHHHHHHHH
Q 030489 11 ALKLFGQLTDRGLEPDIITY-NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA--FCKEGRMDDATMMFSK 87 (176)
Q Consensus 11 a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~ 87 (176)
|..++........ +....| -..+.++.+.|++..|..++.++......+.......|+.+ ....|+++.|...+..
T Consensus 8 A~~yL~~A~~a~~-~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 8 AEQYLQQAQQASG-EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCc-HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 3334444444322 333333 36677888999999999999998876666776666667655 4567889999998875
Q ss_pred HHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 88 MLEKGPKAN--VVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 88 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
......++. ...+.....+|...|++-++.+.+-.+
T Consensus 87 ~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 87 QDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp --------------------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 433333322 233444556777777777766655443
No 484
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.11 E-value=1.1e+02 Score=22.65 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCCC----
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFSKML----EKGPKANVVTYSCLID-GYFKSQNMKSAFDVYEEMCENNISPNIA---- 133 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~---- 133 (176)
..+-.....|++.|+.+.|.+.+...- ..|.+.|+..+..-+. .|..+.-..+-++..+.+.+.|...+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 445556677899999999888876543 4566767666555443 3333333445555555566666655544
Q ss_pred ----------CChHHHHHHHHHHH
Q 030489 134 ----------GRPTEAMQLYDSML 147 (176)
Q Consensus 134 ----------~~~~~a~~~~~~m~ 147 (176)
.++.+|-.+|-+..
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHc
Confidence 66777777775554
No 485
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.01 E-value=1.3e+02 Score=23.62 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=50.4
Q ss_pred HHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 030489 53 LTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP-------------KANVVTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 53 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
+.+.|+..+......++.. ..|+...|..++++....|. .++....-.+++++. .++.+.++.+
T Consensus 191 l~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3445776666666655554 35888899988887664431 123334444555544 4788889999
Q ss_pred HHHHHHCCCCCCC
Q 030489 120 YEEMCENNISPNI 132 (176)
Q Consensus 120 ~~~m~~~~~~~~~ 132 (176)
+++|...|..+..
T Consensus 268 ~~~l~~~g~~~~~ 280 (509)
T PRK14958 268 VTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHcCCCHHH
Confidence 9999888877643
No 486
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=48.87 E-value=1.5e+02 Score=24.47 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=20.2
Q ss_pred CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 57 QLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 57 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
++..+..+...|+... .|+..+++.+++.+.
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~ 222 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAV 222 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3455566666666543 678888888877754
No 487
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.42 E-value=1.5e+02 Score=24.21 Aligned_cols=94 Identities=9% Similarity=0.160 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS------ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (176)
.||+.-+ ..+..++..+++.|..-... ++.|. -.+..|--+|.+..+++.|.+++++..+.+.. ++.+--.
T Consensus 357 LWn~A~~-~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~ 433 (872)
T KOG4814|consen 357 LWNTAKK-LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLL 433 (872)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHH
Confidence 3444443 33667788888888654432 22222 23456777888999999999999999887543 5555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 030489 103 LIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 103 l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+..+....|..++|+.+......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 66778888999999998877654
No 488
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.06 E-value=1.6e+02 Score=24.33 Aligned_cols=84 Identities=5% Similarity=0.014 Sum_probs=56.2
Q ss_pred HHHHHHHHH-hhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC---CC----------cChhhHHHHHHHHHhc
Q 030489 10 AALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ---LK----------PNSITFTILIDAFCKE 75 (176)
Q Consensus 10 ~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~----------~~~~~~~~ll~~~~~~ 75 (176)
+....+... .+.|+..+......++... .|+...++.+++++...| +. .+......|++++.+
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Confidence 334444444 3567777888887777755 589999999998776533 11 122334445555544
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 030489 76 GRMDDATMMFSKMLEKGPKAN 96 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~ 96 (176)
++...++.+++++...|..+.
T Consensus 259 ~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCHH
Confidence 889999999999999887643
No 489
>COG5210 GTPase-activating protein [General function prediction only]
Probab=47.73 E-value=1e+02 Score=23.93 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 030489 48 QLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (176)
Q Consensus 48 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (176)
+++..+...|+.+...++..++..+.+.-..+.+..+++.+.-.|+......+.+++..
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~ 421 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
No 490
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=47.71 E-value=1.1e+02 Score=22.63 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=80.5
Q ss_pred CChhHHHHHHHHHhhCC-----------CCccHHHHHHHHHHHHhCCChhHHHHHHHHHH-------hCCC-----C---
Q 030489 6 CHLDAALKLFGQLTDRG-----------LEPDIITYNTIICGYCSLNRLDEAVQLFEKLT-------CVQL-----K--- 59 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-------~~~~-----~--- 59 (176)
..+.++...|....... .|=-+.++-.+-..+...|+...|.+++++.. ...+ .
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 34555555555555442 12245666777888899999888877776642 1222 1
Q ss_pred ---------c-ChhhHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 030489 60 ---------P-NSITFTI---LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 60 ---------~-~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 125 (176)
+ |...|-+ -|..+.+.|-+..|.++.+-+...++.-|...--.+|+.|+ +.++++.-+++.+....
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 1 3333333 35667899999999999999998877667777777788775 56788888888887644
No 491
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.25 E-value=1.4e+02 Score=23.44 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=55.9
Q ss_pred hHHHHHHHHH-hhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc------------ChhhHHHHHHHHHhc
Q 030489 9 DAALKLFGQL-TDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP------------NSITFTILIDAFCKE 75 (176)
Q Consensus 9 ~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------------~~~~~~~ll~~~~~~ 75 (176)
++..+.+... .+.|+..+......++... .|+...++..++.+...+-.. .......++++. ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 3444455444 3568777888777776654 588899988888765543221 222234455555 55
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 030489 76 GRMDDATMMFSKMLEKGPKAN 96 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~ 96 (176)
++..+|..+++++...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 899999999999999886543
No 492
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=47.24 E-value=80 Score=26.98 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=49.6
Q ss_pred hCChhHHHHHHHHHhhCCCCccHH-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDII-TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILID 70 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 70 (176)
...+.+++++|..|.+.|+-+... .|...-..+.+.+.+.+|..+|+.=.++...|-...-..+..
T Consensus 91 ~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~ 157 (974)
T KOG1166|consen 91 REELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSN 157 (974)
T ss_pred HHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 456789999999999998877654 455777778889999999999988777666665544443333
No 493
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.11 E-value=1.1e+02 Score=22.07 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=81.4
Q ss_pred hhCChhHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHhCCChhHHHHHHHHHHhC---CC--CcChhhHHHHHHHHHhc
Q 030489 4 KECHLDAALKLFGQLTDRGLEP---DIITYNTIICGYCSLNRLDEAVQLFEKLTCV---QL--KPNSITFTILIDAFCKE 75 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~ll~~~~~~ 75 (176)
+...+++|+.-|....+-.... .-...-.++..+.+.+++++....|.+|... .+ .-+....|++++.-.-+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457889999998887642222 2345567889999999999999999988642 11 12445567777776666
Q ss_pred CCHHHHHHHHHHHHh----c-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 76 GRMDDATMMFSKMLE----K-GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+.+--.+.++.-.+ . +-..--.|-+.|-..|...|++.+..++++++...
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 666555555543321 1 11223345566778888888888888888888653
No 494
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.68 E-value=1.9e+02 Score=24.76 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+..+|+++.|++.-+.+- +..+|..|...-...|+.+-|+..|++.+. |..|--.|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---CChHHHHHHHHHHHHCCCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~a~~~~~~m~~~g~~ 152 (176)
.++..... -..-.......-.-.|+.++-.++++.--......-.. |.-++|.++.++....+..
T Consensus 718 ~Km~~iae------~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 718 SKMMKIAE------IRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred HHHHHHHH------hhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhccccCC
No 495
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.64 E-value=1.5e+02 Score=23.75 Aligned_cols=113 Identities=13% Similarity=0.214 Sum_probs=65.1
Q ss_pred HHHHHHHHhhC----CCCccHHHHHHH-HHHHHhCCChhHHHHHHHHHHhCC---CCcChhhHHHHHHHHH--hcCCHHH
Q 030489 11 ALKLFGQLTDR----GLEPDIITYNTI-ICGYCSLNRLDEAVQLFEKLTCVQ---LKPNSITFTILIDAFC--KEGRMDD 80 (176)
Q Consensus 11 a~~~~~~~~~~----~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~--~~~~~~~ 80 (176)
|....++..+. +..+-...|..+ +..+...++...|++.++.....- ..|-..++..++.+.. +.+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 66666665432 222333444444 333334479999999998776532 3445555556665543 4455666
Q ss_pred HHHHHHHHHhcC---------CCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKG---------PKANVVTYSCLIDGY--FKSQNMKSAFDVYEEM 123 (176)
Q Consensus 81 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m 123 (176)
+.+.++++.... -.|-..+|..+++.+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666663321 234677788887655 4467776776666655
No 496
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=46.47 E-value=58 Score=18.87 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
.|+..|+.++.+.|.-..|..+-+.+.
T Consensus 65 At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 65 ASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred cHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 344444444444444444444444333
No 497
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.62 E-value=93 Score=21.02 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 100 YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
--++|..|-+.-+|.++.++++.|.+..+..+..
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L 168 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL 168 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3457778888889999999999888776655544
No 498
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=44.80 E-value=8.5 Score=19.76 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
++.+.+|.+|-.....|....|+..++=|
T Consensus 9 ~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 9 EELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred HHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 34445555554444445555554444433
No 499
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=44.72 E-value=50 Score=17.61 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 030489 11 ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKL 53 (176)
Q Consensus 11 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 53 (176)
|...|+.-.+.+++.|......++.-.++.-.-.+..++.+.|
T Consensus 18 ar~~~~k~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 18 ARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3334443333344444444444444444444444444444443
No 500
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=44.69 E-value=1.6e+02 Score=23.49 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=25.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 030489 72 FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY-FKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~ 124 (176)
=.+.|..+.+.++|++-+.. ++.+...|...+.-+ ...|+.+.....|+...
T Consensus 89 E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 89 EYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 34555555555555555443 344555554444322 23345555555555443
Done!