Query 030489
Match_columns 176
No_of_seqs 257 out of 1516
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 23:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.4E-38 3.2E-42 229.4 19.5 170 1-170 35-225 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.3E-33 8E-38 206.2 17.1 166 9-174 7-194 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 4.2E-24 1.4E-28 164.0 10.0 143 26-169 126-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 1.3E-23 4.5E-28 161.3 8.3 126 1-131 136-265 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 8.3E-19 2.8E-23 131.3 18.0 169 2-174 383-569 (597)
6 2xpi_A Anaphase-promoting comp 99.8 8E-19 2.7E-23 131.3 16.8 169 3-174 350-535 (597)
7 2pl2_A Hypothetical conserved 99.7 5.9E-15 2E-19 97.6 18.0 167 2-175 15-205 (217)
8 1w3b_A UDP-N-acetylglucosamine 99.7 1.2E-14 4.1E-19 103.6 18.3 142 28-174 204-358 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.7 1.6E-14 5.5E-19 103.0 18.1 167 4-174 147-324 (388)
10 2q7f_A YRRB protein; TPR, prot 99.6 2.7E-14 9.4E-19 95.2 15.6 169 2-174 33-212 (243)
11 2ho1_A Type 4 fimbrial biogene 99.6 5.8E-14 2E-18 94.3 16.8 170 2-174 47-228 (252)
12 2y4t_A DNAJ homolog subfamily 99.6 2.5E-14 8.6E-19 103.6 15.8 167 2-174 36-230 (450)
13 2vq2_A PILW, putative fimbrial 99.6 8.6E-14 2.9E-18 91.6 16.9 171 2-174 18-201 (225)
14 2y4t_A DNAJ homolog subfamily 99.6 5E-14 1.7E-18 102.0 16.4 167 2-174 153-348 (450)
15 4eqf_A PEX5-related protein; a 99.6 6.5E-14 2.2E-18 99.0 15.9 167 2-174 75-300 (365)
16 3hym_B Cell division cycle pro 99.6 2.1E-13 7E-18 94.7 16.7 169 2-174 32-212 (330)
17 3uq3_A Heat shock protein STI1 99.6 7.1E-14 2.4E-18 93.8 13.8 170 2-174 15-226 (258)
18 3mkr_A Coatomer subunit epsilo 99.6 7.7E-14 2.6E-18 96.3 14.2 161 2-173 75-252 (291)
19 1fch_A Peroxisomal targeting s 99.6 2.9E-13 1E-17 95.5 17.1 110 62-174 217-349 (368)
20 3vtx_A MAMA; tetratricopeptide 99.6 5.9E-13 2E-17 85.4 17.1 150 2-158 15-177 (184)
21 1fch_A Peroxisomal targeting s 99.6 5.7E-13 2E-17 94.0 18.4 168 2-174 74-304 (368)
22 3mkr_A Coatomer subunit epsilo 99.6 8.1E-13 2.8E-17 91.2 17.5 160 2-174 44-219 (291)
23 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-12 4.2E-17 87.8 17.9 154 2-161 81-248 (252)
24 3hym_B Cell division cycle pro 99.6 4.9E-13 1.7E-17 92.8 16.3 168 2-174 66-255 (330)
25 4eqf_A PEX5-related protein; a 99.6 1.5E-13 5E-18 97.2 13.7 169 2-174 109-346 (365)
26 3ieg_A DNAJ homolog subfamily 99.5 6.7E-13 2.3E-17 93.0 16.2 170 2-174 13-207 (359)
27 2gw1_A Mitochondrial precursor 99.5 2.4E-12 8.2E-17 94.5 19.6 169 2-175 16-290 (514)
28 3cv0_A Peroxisome targeting si 99.5 1.5E-12 5.1E-17 90.3 17.4 60 65-125 175-234 (327)
29 3ieg_A DNAJ homolog subfamily 99.5 1.9E-12 6.6E-17 90.6 18.0 169 2-174 130-325 (359)
30 3u4t_A TPR repeat-containing p 99.5 2.1E-12 7.2E-17 87.5 17.2 165 2-174 13-198 (272)
31 2pl2_A Hypothetical conserved 99.5 4.9E-13 1.7E-17 88.4 13.5 145 24-174 2-170 (217)
32 2vq2_A PILW, putative fimbrial 99.5 2.9E-12 9.9E-17 84.2 16.8 156 2-162 52-222 (225)
33 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.2E-12 4E-17 88.8 14.9 144 3-148 16-172 (275)
34 3cv0_A Peroxisome targeting si 99.5 5.3E-12 1.8E-16 87.5 17.9 168 2-174 31-259 (327)
35 3as5_A MAMA; tetratricopeptide 99.5 3.1E-12 1.1E-16 81.5 15.3 143 2-149 18-173 (186)
36 2fo7_A Synthetic consensus TPR 99.5 4.6E-12 1.6E-16 76.5 15.4 122 2-126 11-132 (136)
37 2q7f_A YRRB protein; TPR, prot 99.5 3.7E-12 1.3E-16 84.8 15.9 148 2-156 67-227 (243)
38 3fp2_A TPR repeat-containing p 99.5 2.2E-12 7.6E-17 95.3 15.3 169 2-174 286-481 (537)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-12 8.3E-17 87.2 14.3 169 2-174 53-234 (275)
40 3vtx_A MAMA; tetratricopeptide 99.5 7.8E-12 2.7E-16 80.1 15.4 146 26-174 4-160 (184)
41 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-12 4.1E-17 90.1 11.8 147 2-148 37-223 (311)
42 2gw1_A Mitochondrial precursor 99.4 1.3E-12 4.4E-17 95.9 12.2 169 2-174 247-434 (514)
43 4gyw_A UDP-N-acetylglucosamine 99.4 5.3E-12 1.8E-16 96.8 15.8 141 2-147 19-172 (723)
44 4abn_A Tetratricopeptide repea 99.4 1.7E-12 6E-17 95.2 12.4 167 2-174 112-311 (474)
45 4i17_A Hypothetical protein; T 99.4 1.4E-11 4.8E-16 81.6 15.5 123 2-126 17-146 (228)
46 3uq3_A Heat shock protein STI1 99.4 8.4E-12 2.9E-16 83.6 14.4 158 2-162 48-253 (258)
47 4gyw_A UDP-N-acetylglucosamine 99.4 1.7E-11 5.8E-16 94.0 16.2 145 24-174 6-164 (723)
48 1b89_A Protein (clathrin heavy 99.4 5.4E-14 1.9E-18 100.9 2.4 146 2-174 42-196 (449)
49 1ouv_A Conserved hypothetical 99.4 8.3E-11 2.8E-15 80.0 17.9 114 4-126 18-143 (273)
50 2ond_A Cleavage stimulation fa 99.4 5.4E-11 1.9E-15 82.5 16.9 161 9-174 81-260 (308)
51 1ouv_A Conserved hypothetical 99.4 1.9E-10 6.6E-15 78.1 19.2 158 5-174 55-241 (273)
52 2h6f_A Protein farnesyltransfe 99.4 1.6E-11 5.5E-16 87.7 14.3 163 2-169 107-288 (382)
53 3fp2_A TPR repeat-containing p 99.4 1.9E-11 6.7E-16 90.2 15.1 164 6-174 216-397 (537)
54 3edt_B KLC 2, kinesin light ch 99.4 3.6E-12 1.2E-16 86.4 10.1 145 4-148 13-197 (283)
55 3u4t_A TPR repeat-containing p 99.4 2.8E-11 9.5E-16 82.0 12.9 169 2-174 47-240 (272)
56 3qky_A Outer membrane assembly 99.3 8.2E-11 2.8E-15 79.5 14.9 167 2-172 25-249 (261)
57 3as5_A MAMA; tetratricopeptide 99.3 1.6E-10 5.4E-15 73.5 15.4 122 2-126 52-173 (186)
58 3urz_A Uncharacterized protein 99.3 6.7E-11 2.3E-15 77.6 13.2 153 2-163 14-198 (208)
59 4i17_A Hypothetical protein; T 99.3 2.8E-10 9.7E-15 75.3 15.3 144 25-171 5-169 (228)
60 2fo7_A Synthetic consensus TPR 99.3 2.7E-10 9.2E-15 68.5 13.8 120 28-149 2-132 (136)
61 2ond_A Cleavage stimulation fa 99.3 3.4E-10 1.2E-14 78.5 16.0 163 9-174 33-222 (308)
62 2e2e_A Formate-dependent nitri 99.3 3.7E-10 1.3E-14 71.9 13.4 124 2-128 20-146 (177)
63 4ga2_A E3 SUMO-protein ligase 99.3 8.1E-11 2.8E-15 73.3 10.0 121 2-125 7-128 (150)
64 1hh8_A P67PHOX, NCF-2, neutrop 99.2 7.9E-10 2.7E-14 72.2 15.0 137 2-144 16-167 (213)
65 2h6f_A Protein farnesyltransfe 99.2 3.9E-10 1.3E-14 80.6 14.1 161 2-169 141-323 (382)
66 4abn_A Tetratricopeptide repea 99.2 2E-10 6.9E-15 84.3 12.6 160 7-174 83-277 (474)
67 3gyz_A Chaperone protein IPGC; 99.2 1.6E-09 5.5E-14 67.5 14.7 100 26-127 35-134 (151)
68 2pzi_A Probable serine/threoni 99.2 1.6E-10 5.4E-15 88.4 11.9 159 4-170 403-583 (681)
69 2r5s_A Uncharacterized protein 99.2 3E-10 1E-14 72.4 11.2 142 2-147 16-171 (176)
70 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.9E-09 6.4E-14 71.4 15.3 147 2-149 14-213 (225)
71 3edt_B KLC 2, kinesin light ch 99.2 5.2E-10 1.8E-14 75.7 12.5 124 2-125 53-197 (283)
72 2vsy_A XCC0866; transferase, g 99.2 8.2E-10 2.8E-14 82.7 14.6 142 5-149 2-157 (568)
73 1a17_A Serine/threonine protei 99.2 2.1E-09 7.1E-14 67.3 14.2 120 2-124 23-144 (166)
74 1b89_A Protein (clathrin heavy 99.2 1.1E-10 3.6E-15 84.1 8.8 104 26-147 121-234 (449)
75 3nf1_A KLC 1, kinesin light ch 99.2 3.1E-10 1E-14 78.0 10.2 151 24-174 24-214 (311)
76 1qqe_A Vesicular transport pro 99.2 1.5E-09 5E-14 74.8 13.4 147 2-148 47-227 (292)
77 4gco_A Protein STI-1; structur 99.2 2E-09 6.9E-14 64.9 12.4 102 23-126 8-110 (126)
78 2ooe_A Cleavage stimulation fa 99.1 5.1E-09 1.7E-13 77.7 16.7 165 5-174 292-482 (530)
79 3qou_A Protein YBBN; thioredox 99.1 1.4E-09 4.9E-14 74.7 12.6 147 24-174 114-274 (287)
80 2vgx_A Chaperone SYCD; alterna 99.1 1E-09 3.5E-14 68.1 10.8 111 13-126 8-118 (148)
81 4gco_A Protein STI-1; structur 99.1 5.3E-09 1.8E-13 63.0 13.6 101 2-105 23-123 (126)
82 1na0_A Designed protein CTPR3; 99.1 5.8E-09 2E-13 61.8 13.5 99 26-126 8-106 (125)
83 1hh8_A P67PHOX, NCF-2, neutrop 99.1 4.5E-08 1.6E-12 63.8 18.3 133 28-165 7-166 (213)
84 4a1s_A PINS, partner of inscut 99.1 1.8E-10 6E-15 82.5 7.2 172 2-174 58-282 (411)
85 2vsy_A XCC0866; transferase, g 99.1 9.6E-09 3.3E-13 76.9 16.6 124 2-128 33-159 (568)
86 1p5q_A FKBP52, FK506-binding p 99.1 5.7E-09 2E-13 73.3 14.4 121 2-124 157-292 (336)
87 2vyi_A SGTA protein; chaperone 99.1 6.4E-09 2.2E-13 62.1 12.8 99 26-126 11-109 (131)
88 3gw4_A Uncharacterized protein 99.1 3E-09 1E-13 68.8 12.0 145 2-147 2-174 (203)
89 4g1t_A Interferon-induced prot 99.1 5.3E-09 1.8E-13 76.2 14.6 168 5-175 226-450 (472)
90 2ooe_A Cleavage stimulation fa 99.1 8.3E-09 2.8E-13 76.6 15.8 160 9-174 255-444 (530)
91 3q15_A PSP28, response regulat 99.1 3.5E-09 1.2E-13 75.3 12.8 169 2-174 151-355 (378)
92 3ulq_A Response regulator aspa 99.1 8E-10 2.8E-14 78.7 9.5 170 2-174 153-358 (383)
93 2lni_A Stress-induced-phosphop 99.1 9E-09 3.1E-13 61.8 12.8 101 24-126 13-113 (133)
94 1na0_A Designed protein CTPR3; 99.1 1.5E-08 5E-13 60.0 13.5 106 2-110 19-124 (125)
95 4ga2_A E3 SUMO-protein ligase 99.1 5.5E-09 1.9E-13 64.9 11.7 108 2-112 41-149 (150)
96 3qky_A Outer membrane assembly 99.0 1.8E-08 6E-13 68.0 14.8 142 24-168 12-198 (261)
97 3u3w_A Transcriptional activat 99.0 1.7E-08 5.9E-13 69.4 14.9 146 2-147 85-264 (293)
98 3upv_A Heat shock protein STI1 99.0 1.8E-08 6E-13 60.4 13.3 98 26-125 3-100 (126)
99 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.9E-08 6.4E-13 66.6 14.5 147 26-174 3-203 (225)
100 1wao_1 Serine/threonine protei 99.0 1.3E-08 4.3E-13 74.9 14.4 117 2-121 16-134 (477)
101 2lni_A Stress-induced-phosphop 99.0 2.8E-08 9.7E-13 59.6 13.8 108 2-112 26-133 (133)
102 1a17_A Serine/threonine protei 99.0 2E-08 6.7E-13 62.7 13.3 120 26-147 12-144 (166)
103 3q49_B STIP1 homology and U bo 99.0 3.4E-08 1.2E-12 59.8 14.0 101 24-126 6-106 (137)
104 3sz7_A HSC70 cochaperone (SGT) 99.0 3E-08 1E-12 62.2 14.1 102 24-127 8-109 (164)
105 2xcb_A PCRH, regulatory protei 99.0 1.4E-08 4.6E-13 62.4 12.2 99 26-126 17-115 (142)
106 3rjv_A Putative SEL1 repeat pr 99.0 4.3E-08 1.5E-12 64.3 15.2 143 2-151 28-199 (212)
107 3qou_A Protein YBBN; thioredox 99.0 6.6E-09 2.3E-13 71.4 11.6 123 2-128 127-250 (287)
108 2kck_A TPR repeat; tetratricop 99.0 1.4E-08 4.8E-13 59.0 11.4 102 26-129 5-109 (112)
109 1qqe_A Vesicular transport pro 99.0 6.1E-09 2.1E-13 71.7 11.2 125 2-126 87-228 (292)
110 3gyz_A Chaperone protein IPGC; 99.0 6.9E-09 2.3E-13 64.6 10.4 90 2-93 46-135 (151)
111 3ro2_A PINS homolog, G-protein 99.0 9.3E-10 3.2E-14 76.1 7.0 172 2-174 15-242 (338)
112 2vyi_A SGTA protein; chaperone 99.0 7.1E-08 2.4E-12 57.5 14.3 109 2-113 22-130 (131)
113 1elw_A TPR1-domain of HOP; HOP 99.0 6.1E-08 2.1E-12 56.7 13.7 99 26-126 3-101 (118)
114 3urz_A Uncharacterized protein 99.0 5.5E-09 1.9E-13 68.4 9.9 99 27-127 4-118 (208)
115 3ulq_A Response regulator aspa 99.0 8.8E-09 3E-13 73.3 11.7 169 2-170 113-318 (383)
116 4a1s_A PINS, partner of inscut 99.0 5.9E-10 2E-14 79.8 5.5 173 2-174 96-322 (411)
117 2fbn_A 70 kDa peptidylprolyl i 99.0 2.7E-08 9.3E-13 64.4 12.2 122 2-125 48-185 (198)
118 3upv_A Heat shock protein STI1 98.9 4.5E-08 1.6E-12 58.6 12.4 89 2-92 14-102 (126)
119 3sf4_A G-protein-signaling mod 98.9 1.7E-09 6E-14 76.9 6.6 172 2-174 19-246 (406)
120 2pzi_A Probable serine/threoni 98.9 6.3E-09 2.2E-13 79.6 9.6 121 2-126 443-563 (681)
121 2qfc_A PLCR protein; TPR, HTH, 98.9 3.1E-07 1.1E-11 63.0 17.0 146 2-147 85-264 (293)
122 1elw_A TPR1-domain of HOP; HOP 98.9 9.9E-08 3.4E-12 55.8 12.7 101 2-105 14-114 (118)
123 2xcb_A PCRH, regulatory protei 98.9 3.2E-08 1.1E-12 60.7 10.8 89 2-92 28-116 (142)
124 2dba_A Smooth muscle cell asso 98.9 1.7E-07 5.9E-12 57.2 14.1 100 24-126 25-128 (148)
125 3sf4_A G-protein-signaling mod 98.9 1.7E-09 5.8E-14 77.0 5.5 173 2-174 97-326 (406)
126 3mv2_B Coatomer subunit epsilo 98.9 6.8E-08 2.3E-12 66.7 13.2 155 11-170 85-270 (310)
127 3rjv_A Putative SEL1 repeat pr 98.9 8.3E-08 2.8E-12 62.9 13.2 146 10-167 4-174 (212)
128 2xm6_A Protein corresponding t 98.9 3.6E-07 1.2E-11 67.2 17.9 113 5-126 56-180 (490)
129 4g1t_A Interferon-induced prot 98.9 7.4E-08 2.5E-12 70.1 14.1 171 2-174 61-266 (472)
130 3ro2_A PINS homolog, G-protein 98.9 3E-09 1E-13 73.5 6.5 173 2-174 53-282 (338)
131 1hxi_A PEX5, peroxisome target 98.9 5.4E-08 1.9E-12 58.1 11.2 97 28-126 18-114 (121)
132 4gcn_A Protein STI-1; structur 98.9 5.4E-08 1.9E-12 58.6 11.0 98 27-125 8-111 (127)
133 2xm6_A Protein corresponding t 98.9 4E-07 1.4E-11 66.9 17.7 114 5-127 92-217 (490)
134 3q15_A PSP28, response regulat 98.9 7.5E-08 2.6E-12 68.5 13.3 168 2-170 111-315 (378)
135 1hz4_A MALT regulatory protein 98.9 1.2E-07 4.2E-12 67.0 14.2 172 3-174 25-234 (373)
136 1hz4_A MALT regulatory protein 98.9 6.9E-08 2.4E-12 68.3 12.9 173 2-174 63-272 (373)
137 2vgx_A Chaperone SYCD; alterna 98.9 1.1E-07 3.8E-12 58.8 12.3 89 2-92 31-119 (148)
138 2r5s_A Uncharacterized protein 98.8 6.2E-08 2.1E-12 61.6 10.9 121 2-125 50-172 (176)
139 3k9i_A BH0479 protein; putativ 98.8 2E-08 6.7E-13 59.6 8.0 88 4-92 2-91 (117)
140 1elr_A TPR2A-domain of HOP; HO 98.8 6.4E-08 2.2E-12 57.7 10.3 100 26-126 3-108 (131)
141 2dba_A Smooth muscle cell asso 98.8 2.2E-07 7.5E-12 56.7 12.8 101 2-106 38-142 (148)
142 3mv2_B Coatomer subunit epsilo 98.8 1.9E-07 6.3E-12 64.6 13.3 147 2-156 110-287 (310)
143 2ifu_A Gamma-SNAP; membrane fu 98.8 3.6E-08 1.2E-12 68.3 9.9 144 3-147 47-222 (307)
144 3u3w_A Transcriptional activat 98.8 1.1E-07 3.9E-12 65.3 12.2 122 3-124 126-264 (293)
145 1p5q_A FKBP52, FK506-binding p 98.8 1.4E-07 4.7E-12 66.3 12.7 118 7-126 128-259 (336)
146 3sz7_A HSC70 cochaperone (SGT) 98.8 2E-07 6.9E-12 58.4 12.1 91 2-94 21-111 (164)
147 3k9i_A BH0479 protein; putativ 98.8 1.2E-08 4.2E-13 60.5 6.0 87 39-126 2-90 (117)
148 2kck_A TPR repeat; tetratricop 98.8 1.6E-07 5.5E-12 54.4 10.8 91 2-94 16-109 (112)
149 1hxi_A PEX5, peroxisome target 98.8 6.2E-08 2.1E-12 57.9 8.9 89 2-92 27-115 (121)
150 2ifu_A Gamma-SNAP; membrane fu 98.8 3.9E-08 1.3E-12 68.1 9.1 122 2-124 86-222 (307)
151 2xev_A YBGF; tetratricopeptide 98.8 2.9E-07 9.9E-12 55.0 12.0 94 31-126 6-105 (129)
152 4gcn_A Protein STI-1; structur 98.8 6.7E-08 2.3E-12 58.2 8.7 97 2-101 18-120 (127)
153 2xev_A YBGF; tetratricopeptide 98.8 6.1E-07 2.1E-11 53.6 12.9 90 2-93 12-107 (129)
154 4f3v_A ESX-1 secretion system 98.8 1E-07 3.6E-12 65.0 10.4 123 2-127 112-238 (282)
155 2c2l_A CHIP, carboxy terminus 98.8 4.9E-07 1.7E-11 61.9 13.7 85 4-90 16-100 (281)
156 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 1.8E-07 6.1E-12 68.4 12.0 120 2-123 278-412 (457)
157 2e2e_A Formate-dependent nitri 98.7 1E-07 3.5E-12 60.4 9.5 109 37-149 20-144 (177)
158 3gw4_A Uncharacterized protein 98.7 1.1E-07 3.8E-12 61.2 9.5 124 2-125 36-175 (203)
159 2fbn_A 70 kDa peptidylprolyl i 98.7 5.2E-08 1.8E-12 63.0 7.9 120 5-126 17-151 (198)
160 3q49_B STIP1 homology and U bo 98.7 2.5E-07 8.6E-12 55.9 10.3 88 2-91 19-106 (137)
161 1elr_A TPR2A-domain of HOP; HO 98.7 1.6E-07 5.6E-12 55.9 9.4 103 2-107 14-122 (131)
162 2qfc_A PLCR protein; TPR, HTH, 98.7 1E-06 3.4E-11 60.5 14.2 122 3-124 126-264 (293)
163 1xi4_A Clathrin heavy chain; a 98.7 5.8E-07 2E-11 72.8 14.4 132 26-174 1104-1240(1630)
164 1ihg_A Cyclophilin 40; ppiase 98.7 3.7E-07 1.3E-11 65.0 11.9 115 2-118 233-362 (370)
165 3ro3_A PINS homolog, G-protein 98.7 1.5E-07 5E-12 58.1 8.7 124 2-125 19-157 (164)
166 3rkv_A Putative peptidylprolyl 98.7 6.5E-07 2.2E-11 55.9 11.6 100 26-126 10-126 (162)
167 4b4t_Q 26S proteasome regulato 98.7 1.1E-06 3.9E-11 63.2 14.4 173 2-174 14-235 (434)
168 2if4_A ATFKBP42; FKBP-like, al 98.7 1.2E-07 4.1E-12 66.6 8.8 120 2-125 189-327 (338)
169 4f3v_A ESX-1 secretion system 98.7 1.6E-06 5.3E-11 59.2 13.7 123 34-161 109-247 (282)
170 1xi4_A Clathrin heavy chain; a 98.6 1.1E-06 3.6E-11 71.4 14.2 107 2-123 1115-1221(1630)
171 3n71_A Histone lysine methyltr 98.6 3.9E-07 1.3E-11 67.1 10.9 123 3-125 320-463 (490)
172 1klx_A Cysteine rich protein B 98.6 6E-06 2.1E-10 50.3 13.9 114 4-128 7-128 (138)
173 3ro3_A PINS homolog, G-protein 98.6 6.6E-07 2.2E-11 55.1 9.3 99 27-125 9-117 (164)
174 2hr2_A Hypothetical protein; a 98.6 3.3E-06 1.1E-10 52.6 12.2 99 27-126 11-131 (159)
175 3rkv_A Putative peptidylprolyl 98.6 1.1E-06 3.9E-11 54.8 10.4 91 2-93 21-128 (162)
176 2if4_A ATFKBP42; FKBP-like, al 98.6 7E-07 2.4E-11 62.8 9.9 118 26-148 178-327 (338)
177 4e6h_A MRNA 3'-END-processing 98.5 4.4E-06 1.5E-10 63.9 13.6 160 4-166 390-585 (679)
178 2kat_A Uncharacterized protein 98.5 2.2E-06 7.6E-11 50.2 9.6 81 9-91 2-82 (115)
179 1na3_A Designed protein CTPR2; 98.5 5.8E-06 2E-10 46.0 10.9 84 26-111 8-91 (91)
180 1wao_1 Serine/threonine protei 98.5 8.4E-07 2.9E-11 65.2 8.7 96 30-127 9-104 (477)
181 3dra_A Protein farnesyltransfe 98.5 6.1E-05 2.1E-09 52.2 17.3 160 7-170 48-235 (306)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 6E-06 2.1E-10 60.4 12.8 118 8-127 250-381 (457)
183 2l6j_A TPR repeat-containing p 98.4 2.3E-06 7.9E-11 49.5 8.5 95 25-121 2-102 (111)
184 2kat_A Uncharacterized protein 98.4 6.5E-06 2.2E-10 48.2 10.5 80 44-125 2-81 (115)
185 2c2l_A CHIP, carboxy terminus 98.4 5.6E-06 1.9E-10 56.6 11.3 100 25-126 2-101 (281)
186 3e4b_A ALGK; tetratricopeptide 98.4 7.4E-05 2.5E-09 54.5 17.3 135 7-151 194-353 (452)
187 1ihg_A Cyclophilin 40; ppiase 98.4 7.3E-06 2.5E-10 58.4 11.7 99 27-126 223-336 (370)
188 3dra_A Protein farnesyltransfe 98.4 9E-06 3.1E-10 56.3 11.6 104 6-112 124-235 (306)
189 2hr2_A Hypothetical protein; a 98.4 7.1E-06 2.4E-10 51.1 9.9 90 2-91 21-131 (159)
190 4e6h_A MRNA 3'-END-processing 98.3 1.6E-05 5.4E-10 60.9 13.1 50 5-55 356-406 (679)
191 3e4b_A ALGK; tetratricopeptide 98.3 1.9E-05 6.5E-10 57.7 12.1 132 27-167 176-330 (452)
192 2l6j_A TPR repeat-containing p 98.2 4.6E-05 1.6E-09 43.8 10.9 65 61-126 3-67 (111)
193 3q7a_A Farnesyltransferase alp 98.2 0.00016 5.5E-09 50.9 15.0 160 5-169 67-256 (349)
194 3ma5_A Tetratricopeptide repea 98.2 2.3E-05 7.8E-10 44.8 9.1 64 26-90 6-69 (100)
195 1zu2_A Mitochondrial import re 98.2 9E-06 3.1E-10 50.6 7.7 88 3-92 13-121 (158)
196 3ma5_A Tetratricopeptide repea 98.2 2.3E-05 7.8E-10 44.8 8.5 65 61-126 6-70 (100)
197 3n71_A Histone lysine methyltr 98.1 2.1E-05 7.1E-10 58.1 9.9 112 36-147 318-462 (490)
198 4b4t_Q 26S proteasome regulato 98.1 9.8E-05 3.3E-09 53.0 13.1 146 2-147 65-243 (434)
199 1dce_A Protein (RAB geranylger 98.1 0.00018 6.2E-09 54.1 14.7 159 8-171 45-242 (567)
200 3qww_A SET and MYND domain-con 98.1 2.3E-05 7.8E-10 56.9 8.9 61 63-123 341-408 (433)
201 3qwp_A SET and MYND domain-con 98.0 4.3E-05 1.5E-09 55.5 8.8 26 28-53 330-355 (429)
202 1na3_A Designed protein CTPR2; 98.0 9.1E-05 3.1E-09 40.9 8.5 72 2-75 19-90 (91)
203 1zu2_A Mitochondrial import re 97.9 3.1E-05 1.1E-09 48.2 6.0 87 38-126 13-120 (158)
204 2kc7_A BFR218_protein; tetratr 97.9 4E-05 1.4E-09 43.3 5.9 59 34-93 7-66 (99)
205 3dss_A Geranylgeranyl transfer 97.9 0.00097 3.3E-08 46.7 13.6 143 8-155 90-271 (331)
206 3dss_A Geranylgeranyl transfer 97.8 0.0019 6.3E-08 45.3 14.5 137 7-148 125-303 (331)
207 3qww_A SET and MYND domain-con 97.8 0.00019 6.6E-09 52.1 9.7 86 5-90 311-410 (433)
208 3qwp_A SET and MYND domain-con 97.8 0.00061 2.1E-08 49.5 12.3 93 32-124 292-398 (429)
209 1dce_A Protein (RAB geranylger 97.8 0.00078 2.7E-08 50.7 12.4 133 8-149 89-238 (567)
210 1klx_A Cysteine rich protein B 97.7 0.0018 6.1E-08 39.2 11.9 85 3-93 36-128 (138)
211 3mkq_A Coatomer beta'-subunit; 97.7 0.0022 7.7E-08 49.8 14.9 131 4-170 664-798 (814)
212 3bee_A Putative YFRE protein; 97.7 0.00095 3.2E-08 37.6 9.6 65 26-91 5-72 (93)
213 2kc7_A BFR218_protein; tetratr 97.6 0.00092 3.1E-08 37.5 8.2 78 68-146 6-87 (99)
214 2v5f_A Prolyl 4-hydroxylase su 97.5 0.0029 9.9E-08 36.2 10.3 70 25-94 3-78 (104)
215 3bee_A Putative YFRE protein; 97.5 0.0023 7.9E-08 36.0 9.3 70 59-129 3-75 (93)
216 3q7a_A Farnesyltransferase alp 97.5 0.0053 1.8E-07 43.3 12.9 119 5-126 101-237 (349)
217 1pc2_A Mitochondria fission pr 97.5 0.0016 5.4E-08 40.1 8.8 79 45-125 16-99 (152)
218 3u64_A Protein TP_0956; tetrat 97.4 0.0067 2.3E-07 41.5 12.0 120 26-147 153-296 (301)
219 1pc2_A Mitochondria fission pr 97.4 0.0049 1.7E-07 38.0 10.0 86 6-93 12-102 (152)
220 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0041 1.4E-07 35.6 9.2 67 60-126 3-75 (104)
221 3ly7_A Transcriptional activat 97.3 0.0088 3E-07 42.4 12.3 61 96-160 276-348 (372)
222 3mkq_B Coatomer subunit alpha; 97.3 0.013 4.3E-07 37.1 12.9 120 3-146 16-141 (177)
223 2uy1_A Cleavage stimulation fa 97.3 0.021 7.1E-07 42.3 14.2 113 30-147 289-411 (493)
224 2uy1_A Cleavage stimulation fa 97.2 0.018 6.3E-07 42.5 13.2 114 4-125 298-412 (493)
225 1nzn_A CGI-135 protein, fissio 97.1 0.0089 3E-07 35.5 8.8 85 41-126 15-103 (126)
226 3u64_A Protein TP_0956; tetrat 97.0 0.013 4.3E-07 40.2 10.3 95 7-103 178-283 (301)
227 4gns_B Protein CSD3, chitin bi 96.7 0.018 6.1E-07 44.8 10.0 116 8-124 265-398 (754)
228 3ly7_A Transcriptional activat 96.7 0.016 5.5E-07 41.1 8.9 68 59-128 274-341 (372)
229 1wy6_A Hypothetical protein ST 96.7 0.044 1.5E-06 33.2 9.5 67 61-128 90-156 (172)
230 4h7y_A Dual specificity protei 96.6 0.051 1.7E-06 33.4 10.2 104 24-129 10-126 (161)
231 3mkq_A Coatomer beta'-subunit; 96.3 0.022 7.5E-07 44.3 8.5 77 61-147 680-763 (814)
232 1wy6_A Hypothetical protein ST 96.0 0.12 4E-06 31.4 14.2 56 96-152 90-157 (172)
233 2ff4_A Probable regulatory pro 96.0 0.083 2.8E-06 37.8 9.6 78 65-148 174-256 (388)
234 2ff4_A Probable regulatory pro 95.8 0.094 3.2E-06 37.5 9.3 69 31-100 175-248 (388)
235 1nzn_A CGI-135 protein, fissio 95.8 0.14 4.6E-06 30.5 9.7 86 8-94 17-106 (126)
236 1v54_E Cytochrome C oxidase po 95.7 0.12 4.1E-06 29.4 9.9 68 37-105 19-87 (109)
237 3mkq_B Coatomer subunit alpha; 95.5 0.22 7.6E-06 31.4 9.1 97 34-146 12-115 (177)
238 2y69_E Cytochrome C oxidase su 95.1 0.26 9.1E-06 29.6 9.9 45 45-89 71-115 (152)
239 4gns_B Protein CSD3, chitin bi 94.7 0.19 6.3E-06 39.3 8.4 108 66-175 252-391 (754)
240 4b4t_P 26S proteasome regulato 94.4 1 3.5E-05 32.9 13.0 143 5-147 29-245 (445)
241 4h7y_A Dual specificity protei 94.3 0.48 1.6E-05 29.2 7.8 94 9-105 36-136 (161)
242 4b4t_R RPN7, 26S proteasome re 93.9 1.1 3.8E-05 32.5 10.6 85 63-147 132-235 (429)
243 4fhn_B Nucleoporin NUP120; pro 93.6 2 6.8E-05 35.4 12.5 166 4-175 824-1040(1139)
244 3o48_A Mitochondria fission 1 93.2 0.77 2.6E-05 27.5 10.6 70 57-126 35-107 (134)
245 1v54_E Cytochrome C oxidase po 93.0 0.69 2.4E-05 26.3 8.1 54 72-125 19-73 (109)
246 4b4t_R RPN7, 26S proteasome re 92.2 2.5 8.4E-05 30.7 11.0 52 3-54 142-195 (429)
247 3ffl_A Anaphase-promoting comp 91.7 0.65 2.2E-05 29.0 5.8 52 3-54 31-90 (167)
248 1zbp_A Hypothetical protein VP 91.7 2.2 7.4E-05 29.0 8.7 113 2-125 7-128 (273)
249 1zbp_A Hypothetical protein VP 91.4 0.81 2.8E-05 31.0 6.4 73 35-108 5-79 (273)
250 1y8m_A FIS1; mitochondria, unk 91.4 1.5 5.1E-05 26.6 13.6 68 59-126 36-106 (144)
251 3ffl_A Anaphase-promoting comp 91.3 1.7 5.8E-05 27.1 8.9 103 21-123 12-148 (167)
252 4fhn_B Nucleoporin NUP120; pro 90.3 5.6 0.00019 32.8 11.5 110 2-113 852-987 (1139)
253 2y69_E Cytochrome C oxidase su 90.2 2 6.8E-05 25.9 8.2 50 77-126 68-117 (152)
254 3o48_A Mitochondria fission 1 88.6 2.6 8.9E-05 25.2 9.7 72 22-93 35-109 (134)
255 2uwj_G Type III export protein 88.2 2.3 8E-05 24.1 7.5 49 37-91 49-97 (115)
256 2p58_C Putative type III secre 88.0 2.4 8.3E-05 24.1 8.5 47 71-123 49-95 (116)
257 3lvg_A Clathrin heavy chain 1; 88.0 0.002 6.8E-08 47.4 -8.6 134 27-175 83-219 (624)
258 3eyy_A Putative iron uptake re 86.2 3.8 0.00013 24.8 6.4 60 17-78 9-68 (145)
259 1mzb_A Ferric uptake regulatio 85.6 4.1 0.00014 24.3 7.0 60 18-78 9-69 (136)
260 2xig_A Ferric uptake regulatio 85.2 4.6 0.00016 24.5 7.6 44 33-76 32-75 (150)
261 2w57_A Ferric uptake regulatio 85.1 4.7 0.00016 24.5 6.8 60 18-78 8-68 (150)
262 2fe3_A Peroxide operon regulat 84.5 4.9 0.00017 24.3 8.0 59 18-77 13-71 (145)
263 3txn_A 26S proteasome regulato 84.5 9.3 0.00032 27.5 10.1 93 32-124 104-208 (394)
264 4a1g_A Mitotic checkpoint seri 83.2 6 0.0002 24.3 6.6 54 44-97 82-136 (152)
265 3bu8_A Telomeric repeat-bindin 82.7 7.9 0.00027 25.3 7.6 49 8-56 88-143 (235)
266 2d2s_A Exocyst complex compone 82.5 7.5 0.00026 25.7 7.0 84 2-88 28-117 (235)
267 2ion_A PDCD4, programmed cell 82.4 6.5 0.00022 24.1 6.7 66 28-94 10-77 (152)
268 2wvi_A Mitotic checkpoint seri 82.2 6.9 0.00024 24.3 6.5 55 44-98 77-132 (164)
269 4ets_A Ferric uptake regulatio 81.9 4.5 0.00015 25.0 5.5 57 55-112 26-84 (162)
270 2uwj_G Type III export protein 81.7 5.4 0.00018 22.7 8.0 80 40-127 19-98 (115)
271 1y8m_A FIS1; mitochondria, unk 81.5 6.8 0.00023 23.8 11.4 72 22-93 34-108 (144)
272 2p58_C Putative type III secre 80.8 5.9 0.0002 22.6 8.9 86 7-101 22-107 (116)
273 2fu4_A Ferric uptake regulatio 80.2 4.9 0.00017 21.3 6.7 59 18-77 8-67 (83)
274 2o03_A Probable zinc uptake re 79.5 5.2 0.00018 23.6 5.1 47 32-78 15-61 (131)
275 3mwm_A ZUR, putative metal upt 78.9 4.6 0.00016 24.2 4.7 48 31-78 17-64 (139)
276 2xig_A Ferric uptake regulatio 78.9 8.6 0.00029 23.3 7.4 64 50-114 15-78 (150)
277 2w57_A Ferric uptake regulatio 78.9 8.6 0.00029 23.3 6.1 63 51-114 6-69 (150)
278 2fe3_A Peroxide operon regulat 78.1 8.9 0.0003 23.1 7.0 63 51-114 11-73 (145)
279 1mzb_A Ferric uptake regulatio 77.5 8.9 0.0003 22.8 6.1 62 52-114 8-70 (136)
280 3eyy_A Putative iron uptake re 76.7 9.2 0.00032 23.0 5.7 61 51-113 8-68 (145)
281 3txn_A 26S proteasome regulato 76.3 19 0.00065 25.9 11.4 145 2-147 29-208 (394)
282 2nsz_A Programmed cell death p 76.2 9.7 0.00033 22.5 8.0 65 29-94 9-75 (129)
283 2fu4_A Ferric uptake regulatio 76.2 6.8 0.00023 20.7 6.2 61 51-112 6-67 (83)
284 2b7e_A PRE-mRNA processing pro 75.9 1.9 6.6E-05 21.7 2.0 29 9-37 3-31 (59)
285 4b4t_P 26S proteasome regulato 75.6 21 0.00071 26.1 11.5 96 30-125 140-246 (445)
286 4aez_C MAD3, mitotic spindle c 74.9 12 0.00039 24.7 5.9 53 44-96 131-184 (223)
287 3esl_A Checkpoint serine/threo 74.9 14 0.00049 23.8 9.7 54 75-128 92-146 (202)
288 2wpv_A GET4, UPF0363 protein Y 74.6 19 0.00064 25.0 11.4 86 35-120 61-157 (312)
289 3t8k_A Uncharacterized protein 74.1 13 0.00046 23.1 9.7 127 3-133 14-150 (186)
290 2o03_A Probable zinc uptake re 71.9 8.1 0.00028 22.8 4.5 47 67-113 15-61 (131)
291 3mwm_A ZUR, putative metal upt 70.6 7.6 0.00026 23.2 4.2 49 66-114 17-65 (139)
292 3f3f_C Nucleoporin NUP85; stru 70.2 15 0.00051 27.9 6.3 90 26-117 478-569 (570)
293 3bqo_A Telomeric repeat-bindin 70.1 7.3 0.00025 25.1 4.0 22 34-55 124-145 (211)
294 3lvg_A Clathrin heavy chain 1; 69.2 0.57 1.9E-05 35.0 -1.2 156 3-168 94-276 (624)
295 4ets_A Ferric uptake regulatio 69.1 17 0.00059 22.3 6.1 72 8-80 13-87 (162)
296 3esl_A Checkpoint serine/threo 67.5 22 0.00076 22.9 10.1 56 40-95 92-148 (202)
297 1qsa_A Protein (soluble lytic 65.6 44 0.0015 25.7 11.2 115 6-124 228-346 (618)
298 2ion_A PDCD4, programmed cell 65.5 20 0.0007 21.8 8.6 17 3-19 20-36 (152)
299 4aez_C MAD3, mitotic spindle c 65.3 26 0.0009 23.0 6.2 81 58-143 113-194 (223)
300 3f3f_C Nucleoporin NUP85; stru 64.4 45 0.0015 25.4 8.2 69 75-146 494-562 (570)
301 3qil_A Clathrin heavy chain 1; 62.7 20 0.0007 21.0 4.6 47 33-82 38-84 (125)
302 2d2s_A Exocyst complex compone 62.6 30 0.001 22.8 12.6 90 32-124 23-118 (235)
303 2keb_A DNA polymerase subunit 61.3 20 0.00067 20.2 6.3 31 46-76 28-58 (101)
304 3ygs_P Procaspase 9; apoptosis 60.2 20 0.00068 19.9 6.3 63 49-117 26-88 (97)
305 2ijq_A Hypothetical protein; s 60.0 28 0.00096 21.6 8.5 76 72-147 42-128 (161)
306 2f6m_A Suppressor protein STP2 59.5 16 0.00056 18.7 3.6 44 30-74 5-48 (65)
307 2nsz_A Programmed cell death p 58.9 25 0.00086 20.7 9.9 17 3-19 18-34 (129)
308 3twr_A Tankyrase-2; ankyrin re 57.7 20 0.0007 21.3 4.5 13 69-81 79-91 (165)
309 3qye_A TBC1 domain family memb 57.5 44 0.0015 23.1 7.1 46 49-94 210-255 (331)
310 4a1g_A Mitotic checkpoint seri 57.2 31 0.001 21.1 9.5 71 58-131 64-135 (152)
311 3t5v_B Nuclear mRNA export pro 56.5 48 0.0016 24.4 6.8 62 28-89 177-247 (455)
312 3k1s_A PTS system, cellobiose- 54.6 28 0.00097 19.9 4.6 18 3-20 33-50 (109)
313 2qq8_A TBC1 domain family memb 53.6 32 0.0011 24.0 5.4 42 51-92 217-258 (334)
314 3jxi_A Vanilloid receptor-rela 53.4 14 0.00049 24.0 3.5 90 3-97 13-121 (260)
315 1wgl_A TOLL-interacting protei 53.1 20 0.0007 17.9 3.8 12 42-53 38-49 (59)
316 3eiq_C Programmed cell death p 52.6 60 0.002 23.1 7.1 24 31-54 221-244 (358)
317 2wpv_A GET4, UPF0363 protein Y 52.4 56 0.0019 22.7 11.7 83 3-85 64-157 (312)
318 3qil_A Clathrin heavy chain 1; 52.0 11 0.00038 22.1 2.4 54 63-119 33-86 (125)
319 4ady_A RPN2, 26S proteasome re 51.8 99 0.0034 25.4 9.7 12 137-148 646-657 (963)
320 2ijq_A Hypothetical protein; s 50.9 42 0.0014 20.8 8.4 62 28-90 34-103 (161)
321 3eiq_C Programmed cell death p 49.9 67 0.0023 22.8 7.4 102 65-169 220-326 (358)
322 4b4t_S RPN3, 26S proteasome re 48.5 85 0.0029 23.7 7.7 65 26-90 230-298 (523)
323 2zu6_B Programmed cell death p 48.5 65 0.0022 22.3 6.4 81 66-147 170-254 (307)
324 4fke_A Aminopeptidase N; zinc 48.4 1.1E+02 0.0037 24.9 12.0 79 8-91 705-787 (909)
325 2ko4_A Mediator of RNA polymer 48.3 17 0.00059 19.4 2.5 31 93-123 32-62 (81)
326 2wvi_A Mitotic checkpoint seri 48.0 47 0.0016 20.6 9.4 72 58-132 59-131 (164)
327 3lpz_A GET4 (YOR164C homolog); 47.5 71 0.0024 22.5 14.0 70 16-85 83-159 (336)
328 3f6q_A Integrin-linked protein 46.9 46 0.0016 20.1 9.0 138 3-154 13-165 (179)
329 1wdy_A 2-5A-dependent ribonucl 46.7 57 0.002 21.2 6.3 11 14-24 54-64 (285)
330 4gq2_M Nucleoporin NUP120; bet 45.8 1.2E+02 0.0042 24.7 10.5 89 33-126 816-926 (950)
331 2cos_A Serine/threonine protei 45.4 27 0.00093 17.1 3.8 37 83-124 11-49 (54)
332 2qfz_A TBC1 domain family memb 45.4 74 0.0025 22.1 6.2 111 9-123 189-312 (345)
333 2crb_A Nuclear receptor bindin 45.3 38 0.0013 18.8 4.0 27 27-53 15-41 (97)
334 3kea_A K1L; tropism, ANK repea 45.1 66 0.0022 21.4 8.3 101 14-123 77-184 (285)
335 2p22_A Suppressor protein STP2 44.7 27 0.00092 21.9 3.4 50 60-110 109-158 (174)
336 3kae_A CDC27, possible protein 44.1 60 0.0021 20.7 7.3 88 29-122 34-139 (242)
337 1qsa_A Protein (soluble lytic 44.1 1.1E+02 0.0037 23.6 9.3 80 8-90 268-347 (618)
338 2cwy_A Hypothetical protein TT 43.8 40 0.0014 18.6 4.8 48 74-123 13-65 (94)
339 3hzj_A Rabgap1L, RAB GTPase-ac 43.7 76 0.0026 21.7 7.0 44 50-93 177-220 (310)
340 3hra_A Ankyrin repeat family p 43.6 54 0.0019 20.0 6.4 143 3-155 13-173 (201)
341 3b2a_A TON_1937, putative unch 43.3 67 0.0023 21.6 5.2 112 10-127 94-220 (265)
342 2etb_A Transient receptor pote 42.4 37 0.0013 21.9 4.2 82 3-86 10-111 (256)
343 2dod_A Transcription elongatio 42.3 24 0.00081 19.1 2.6 30 9-39 17-47 (82)
344 3ibx_A TENA, HP1287, putative 41.9 68 0.0023 20.7 7.8 11 98-108 160-170 (221)
345 1ug3_A EIF4GI, eukaryotic prot 41.9 34 0.0012 23.9 4.0 65 29-94 13-78 (339)
346 1uzc_A Hypothetical protein FL 41.7 22 0.00076 18.5 2.4 11 9-19 15-25 (71)
347 3eu9_A Huntingtin-interacting 41.7 58 0.002 20.4 5.0 15 33-47 45-59 (240)
348 1bd8_A P19INK4D CDK4/6 inhibit 41.0 29 0.00098 20.3 3.2 106 3-121 10-122 (156)
349 1wxp_A THO complex subunit 1; 40.2 29 0.001 19.7 2.9 43 78-122 57-99 (110)
350 1oai_A Nuclear RNA export fact 40.1 36 0.0012 17.0 3.0 18 110-127 33-50 (59)
351 3t5v_B Nuclear mRNA export pro 40.0 75 0.0026 23.4 5.6 62 64-125 178-248 (455)
352 2rfa_A Transient receptor pote 39.2 71 0.0024 20.1 5.5 23 70-92 159-181 (232)
353 1ixm_A SPO0B, protein (sporula 38.7 71 0.0024 20.3 4.8 46 8-55 15-60 (192)
354 2qx5_A Nucleoporin NIC96; mRNA 38.3 1.3E+02 0.0044 23.5 6.9 16 108-123 549-564 (661)
355 3c1d_A Protein ORAA, regulator 37.2 70 0.0024 19.5 11.4 48 45-94 48-95 (159)
356 1q2z_A ATP-dependent DNA helic 36.1 15 0.00051 21.4 1.3 50 41-93 41-94 (120)
357 4ady_A RPN2, 26S proteasome re 34.9 1.9E+02 0.0066 23.8 9.7 36 135-170 685-721 (963)
358 2yru_A Steroid receptor RNA ac 33.3 73 0.0025 18.5 8.1 41 85-125 49-89 (118)
359 2zu6_B Programmed cell death p 33.0 1.2E+02 0.0041 20.9 8.6 67 30-97 169-237 (307)
360 2qfz_A TBC1 domain family memb 33.0 1.2E+02 0.0042 21.0 6.7 48 83-130 230-277 (345)
361 3aji_A 26S proteasome non-ATPa 32.9 92 0.0031 19.5 7.6 15 3-17 14-28 (231)
362 2qq8_A TBC1 domain family memb 31.7 57 0.0019 22.7 3.8 45 13-57 214-258 (334)
363 1ixm_A SPO0B, protein (sporula 31.6 1E+02 0.0034 19.6 5.7 48 67-123 37-84 (192)
364 2npu_A FKBP12-rapamycin comple 31.3 83 0.0029 18.5 4.0 17 72-88 50-66 (126)
365 3ljn_A Hypothetical protein; a 31.3 1.3E+02 0.0044 20.7 7.2 21 70-90 89-109 (364)
366 1x60_A Sporulation-specific N- 31.2 59 0.002 16.8 3.6 18 134-151 54-71 (79)
367 1uta_A FTSN, MSGA, cell divisi 31.2 59 0.002 17.0 3.1 19 134-152 54-72 (81)
368 4hbd_A KN motif and ankyrin re 30.8 1.2E+02 0.004 20.1 5.5 11 37-47 118-128 (276)
369 2p1h_A APAF-1, apoptotic prote 30.2 70 0.0024 17.3 6.8 63 46-116 24-86 (94)
370 3pvs_A Replication-associated 30.0 1.6E+02 0.0055 21.5 12.1 20 110-129 268-287 (447)
371 2i2x_B MTAC, methyltransferase 30.0 53 0.0018 21.9 3.3 39 73-111 47-85 (258)
372 3lpz_A GET4 (YOR164C homolog); 30.0 1.5E+02 0.005 20.9 12.6 68 53-120 85-159 (336)
373 4b4t_S RPN3, 26S proteasome re 29.6 1.8E+02 0.0063 22.0 9.5 107 63-171 232-357 (523)
374 3ezq_B Protein FADD; apoptosis 28.9 90 0.0031 18.2 4.9 43 44-89 47-90 (122)
375 1ug3_A EIF4GI, eukaryotic prot 28.3 40 0.0014 23.6 2.6 56 2-59 21-78 (339)
376 2p22_A Suppressor protein STP2 28.2 99 0.0034 19.4 4.0 46 28-74 112-157 (174)
377 3l6a_A Eukaryotic translation 28.0 1.6E+02 0.0056 20.9 8.2 24 31-54 16-39 (364)
378 2rg8_A Programmed cell death p 27.8 1.1E+02 0.0038 18.8 7.1 59 30-90 13-73 (165)
379 3kea_A K1L; tropism, ANK repea 27.5 53 0.0018 21.9 3.1 14 103-116 132-145 (285)
380 4f52_E Glomulin; cullin-ring E 26.7 1.2E+02 0.004 23.4 5.0 90 18-107 18-131 (596)
381 3mv2_A Coatomer subunit alpha; 26.4 1.7E+02 0.0058 20.5 12.8 48 99-149 209-256 (325)
382 2jp7_A MRNA export factor MEX6 26.4 32 0.0011 17.0 1.4 20 6-26 33-52 (57)
383 3rjo_A Endoplasmic reticulum a 25.3 1.9E+02 0.0065 20.7 13.7 78 8-92 216-297 (419)
384 3t8k_A Uncharacterized protein 25.3 1.2E+02 0.0042 18.6 9.0 116 37-156 13-150 (186)
385 1rw2_A ATP-dependent DNA helic 25.0 42 0.0014 20.5 1.9 54 77-133 73-130 (152)
386 1dp3_A TRAM protein; helix-loo 25.0 67 0.0023 15.8 2.2 34 78-111 12-45 (55)
387 4g8k_A 2-5A-dependent ribonucl 24.9 1.6E+02 0.0056 19.8 6.8 97 47-155 219-329 (337)
388 3mab_A Uncharacterized protein 24.7 96 0.0033 17.1 3.6 28 139-166 36-63 (93)
389 3no6_A Transcriptional activat 24.6 1.6E+02 0.0054 19.5 9.3 21 26-46 128-149 (248)
390 3pvs_A Replication-associated 24.6 2.1E+02 0.0071 20.9 12.6 101 9-111 168-304 (447)
391 3utm_A Tankyrase-1; tankyrase, 24.2 1.4E+02 0.0047 20.1 4.7 87 33-132 61-152 (351)
392 1zl8_A LIN-7; heterodimer, alp 24.0 71 0.0024 15.4 4.3 14 9-22 10-23 (53)
393 2dzn_A Probable 26S proteasome 24.0 1.1E+02 0.0037 19.1 4.0 15 3-17 10-24 (228)
394 1k1a_A B-cell lymphoma 3-encod 23.8 1.4E+02 0.0048 18.7 7.8 119 3-131 17-143 (241)
395 2rpa_A Katanin P60 ATPase-cont 23.7 92 0.0032 16.6 3.1 24 101-124 16-39 (78)
396 1g1e_B SIN3A; four-helix bundl 23.7 98 0.0034 16.9 4.4 29 8-37 10-38 (89)
397 1w8i_A Putative VAPC ribonucle 23.7 1.2E+02 0.0042 18.0 4.2 6 46-51 24-29 (156)
398 3e3v_A Regulatory protein RECX 23.6 1.4E+02 0.0047 18.6 11.0 49 10-59 51-99 (177)
399 3ph0_C ASCG; type III secretio 23.6 79 0.0027 15.7 4.4 13 43-55 22-34 (61)
400 2yqf_A Ankyrin-1; death domain 23.6 1E+02 0.0036 17.4 3.4 40 78-119 58-97 (111)
401 3v30_A DNA-binding protein rfx 23.3 1.2E+02 0.0042 17.8 6.0 117 3-133 10-131 (172)
402 3r88_A Anthranilate phosphorib 22.7 2.2E+02 0.0074 20.4 8.3 67 61-128 22-90 (377)
403 1fad_A Protein (FADD protein); 22.2 1.1E+02 0.0037 16.8 4.8 41 79-121 55-95 (99)
404 3bqs_A Uncharacterized protein 21.9 1.1E+02 0.0038 16.8 3.9 29 137-165 34-62 (93)
405 3qye_A TBC1 domain family memb 21.9 2E+02 0.0069 19.8 9.7 75 13-87 209-287 (331)
406 3b5o_A CADD-like protein of un 21.6 1.9E+02 0.0064 19.4 4.6 23 99-121 155-177 (244)
407 4b4t_O 26S proteasome regulato 21.4 2.3E+02 0.0078 20.2 9.4 86 33-118 82-190 (393)
408 3i5p_A Nucleoporin NUP170; hel 21.3 2.7E+02 0.0092 21.0 6.1 31 96-126 216-246 (525)
409 4gt9_A TS, tsase, thymidylate 20.7 1.3E+02 0.0043 19.8 3.7 23 81-107 199-221 (232)
410 3cqc_A Nuclear pore complex pr 20.5 85 0.0029 21.2 2.9 23 66-88 38-60 (270)
411 4fn6_A Thiaminase-2, thiaminas 20.2 1.9E+02 0.0064 18.7 10.1 10 99-108 159-168 (229)
412 4e2i_2 DNA polymerase alpha su 20.0 1.1E+02 0.0039 16.3 4.8 32 11-42 5-36 (78)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.4e-38 Score=229.44 Aligned_cols=170 Identities=15% Similarity=0.222 Sum_probs=163.5
Q ss_pred CchhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHhCCCCcChhhHHHHHHH
Q 030489 1 MLIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR---------LDEAVQLFEKLTCVQLKPNSITFTILIDA 71 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 71 (176)
+|++.|++++|+++|++|.+.|++||..+||+||.+|++.+. +++|.++|++|...|+.||..||++||.+
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999999998765 67899999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHH
Q 030489 72 FCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA 139 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a 139 (176)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+.. |+.++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHhhcccC
Q 030489 140 MQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170 (176)
Q Consensus 140 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 170 (176)
.++|++|.+.|..|+..||+.++..|+..+.
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999987543
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-33 Score=206.18 Aligned_cols=166 Identities=13% Similarity=0.203 Sum_probs=142.5
Q ss_pred hHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC---------H
Q 030489 9 DAALKLFGQLTDRGLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR---------M 78 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~ 78 (176)
..+..+.+.+.+.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 445666777877776554 456899999999999999999999999999999999999999999988765 6
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSM 146 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m 146 (176)
+.|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|+.|+.. |++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999987 9999999999999
Q ss_pred HHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 147 LRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 147 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.+.|+.||..||++||.+|++.|++++|
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 9999999999999999999999999876
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=4.2e-24 Score=164.02 Aligned_cols=143 Identities=7% Similarity=0.063 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHh---CCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTC---VQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSC 102 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (176)
-..|||++|++|++.|++++|.++|.+|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCCC--------CChHHHHHHHHHHHHCCCCCc------HHHHHHHHHHhhc
Q 030489 103 LIDGYFKSQN-MKSAFDVYEEMCENNISPNIA--------GRPTEAMQLYDSMLRNGIMPD------GLLLSTLADYNLQ 167 (176)
Q Consensus 103 l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~------~~~~~~l~~~~~~ 167 (176)
||.++++.|+ .++|.++|++|.+.|+.|+.. ...+.+++..+++ ..++.|+ ..+...|.+.|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-CcccCCCCCCcccccchHHHHHHHcc
Confidence 9999999998 478999999999999999887 4455666666666 4456655 3345556666665
Q ss_pred cc
Q 030489 168 SS 169 (176)
Q Consensus 168 ~g 169 (176)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=161.33 Aligned_cols=126 Identities=12% Similarity=0.188 Sum_probs=110.3
Q ss_pred CchhhCChhHHHHHHHHHhh---CCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC
Q 030489 1 MLIKECHLDAALKLFGQLTD---RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 1 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 77 (176)
+||+.|++++|.++|+.|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||++||+++++.|+
T Consensus 136 glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~ 215 (1134)
T 3spa_A 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215 (1134)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Confidence 58999999999999988764 589999999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 030489 78 -MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (176)
Q Consensus 78 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 131 (176)
.+.|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..|.
T Consensus 216 ~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred cHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 578999999999999999999999999877655 444444444 3344443
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.83 E-value=8.3e-19 Score=131.27 Aligned_cols=169 Identities=9% Similarity=0.012 Sum_probs=107.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.+..+|.+.|++++|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 455666666766666666543 2356666666666777777777777776666553 23566666666777777777777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCCC--------------CChHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NISPNIA--------------GRPTEAMQLY 143 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~--------------~~~~~a~~~~ 143 (176)
.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+.. |++++|.+.|
T Consensus 461 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776665433 6666777777777777777777777766544 4444421 7777777777
Q ss_pred HHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 144 DSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 144 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+++.+.+ ..+..+|..+..+|.+.|++++|
T Consensus 540 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 540 NQGLLLS-TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHHS-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 7766542 22556666777777777766655
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.82 E-value=8e-19 Score=131.35 Aligned_cols=169 Identities=13% Similarity=0.084 Sum_probs=114.7
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.|++++|.++|+++.+.. +.+..+|+.+..+|.+.|++++|+++|+++.+.. +.+..+|+.++.+|.+.|++++|.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555554332 3356677777777777777777777777776543 225667777777777777777777
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHC--
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRN-- 149 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~-- 149 (176)
++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+........ |++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 428 SAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 77777776643 366777777777777777777777777776543221111 8888888888888754
Q ss_pred --CCCCc--HHHHHHHHHHhhcccCcccc
Q 030489 150 --GIMPD--GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 150 --g~~p~--~~~~~~l~~~~~~~g~~~~A 174 (176)
+..|+ ..++..+..+|.+.|++++|
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 66777 67888888888888887766
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=5.9e-15 Score=97.63 Aligned_cols=167 Identities=18% Similarity=0.104 Sum_probs=138.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc------
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE------ 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~------ 75 (176)
+.+.|++++|...|++..+.. |.+...+..+..++.+.|++++|+..+++..+... .+...+..+..++.+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhh
Confidence 567899999999999999875 44889999999999999999999999999987642 3677888899999999
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHH
Q 030489 76 -----GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTE 138 (176)
Q Consensus 76 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~ 138 (176)
|++++|...|++..+..+. +...|..+..+|...|++++|+..|++..+.+ .+.. |++++
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999988655 78899999999999999999999999998876 2222 99999
Q ss_pred HHHHHHHHHHCCCCC-cHHHHHHHHHHhhcccCccccC
Q 030489 139 AMQLYDSMLRNGIMP-DGLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 139 a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 175 (176)
|+..|++..+. .| +...+..+...+...|+.++|.
T Consensus 170 A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 170 ALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999875 34 4667888999999999998874
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=1.2e-14 Score=103.62 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
..|..+...+...|++++|+..|++..... +.+..++..+..++.+.|++++|.+.|+++.+.++. +..+|..+..+|
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 333333444444444444444444333321 113555666667777777777777777777765433 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 108 FKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.+.|++++|...|+++.+.. |+.. |++++|.+.++++.+. .+.+..++..+...+.+.|++++|
T Consensus 282 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776542 2222 7777777777777654 122355677777777777777665
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.66 E-value=1.6e-14 Score=102.95 Aligned_cols=167 Identities=18% Similarity=0.184 Sum_probs=111.2
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+.|++++|.++|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.+. .+...+..+...+...|++++|..
T Consensus 147 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3466666666666665543 22456666666666666666666666666665432 245556666666666677777777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCCCC
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g~~ 152 (176)
.|++..+..+. +..++..+...|.+.|++++|...|+++.+.+...... |++++|.+.|+++.+. .+
T Consensus 225 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p 302 (388)
T 1w3b_A 225 AYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CP 302 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CT
T ss_pred HHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-Cc
Confidence 77666665433 56777888888888888888888888887653221111 8888888888888764 24
Q ss_pred CcHHHHHHHHHHhhcccCcccc
Q 030489 153 PDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 153 p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.+..++..+...+...|++++|
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHH
Confidence 4567888888888888887765
No 10
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2.7e-14 Score=95.19 Aligned_cols=169 Identities=16% Similarity=0.140 Sum_probs=131.8
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHH
Confidence 467889999999999998764 4478889999999999999999999999988764 33677888888999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNG 150 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g 150 (176)
.+.+++..+.... +...+..+...|.+.|++++|...+++........... |++++|...+++..+..
T Consensus 111 ~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 111 KDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999887643 78889999999999999999999999987653221111 99999999999988652
Q ss_pred CCCcHHHHHHHHHHhhcccCcccc
Q 030489 151 IMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 151 ~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
..+..++..+...+...|+.++|
T Consensus 190 -~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 190 -PGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp -TTCHHHHHHHHHHHHHTTCTTHH
T ss_pred -cccHHHHHHHHHHHHHccCHHHH
Confidence 23467888889999999998876
No 11
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=5.8e-14 Score=94.29 Aligned_cols=170 Identities=9% Similarity=-0.011 Sum_probs=135.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+...|++++|.++|+++.+.. +.+..++..+...+...|++++|++.++++.+... .+...+..+...+...|++++|
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhHHHHH
Confidence 456889999999999988764 44788899999999999999999999999887642 3677888888999999999999
Q ss_pred HHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~ 149 (176)
.+.++++.+.+..| +...+..+...|...|++++|...+++........... |++++|...++++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988732223 66788888999999999999999999987654221111 9999999999998864
Q ss_pred CCCCcHHHHHHHHHHhhcccCcccc
Q 030489 150 GIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 150 g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
. ..+...+..+...+...|+.++|
T Consensus 205 ~-~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 205 G-GQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp S-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred C-cCcHHHHHHHHHHHHHccCHHHH
Confidence 2 34566778888888888887765
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.63 E-value=2.5e-14 Score=103.58 Aligned_cols=167 Identities=18% Similarity=0.191 Sum_probs=138.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|+++|+.+.+.. +.+..+|..+..++...|++++|+..|+++.+.+. .+..++..+..+|.+.|++++|
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999998764 45789999999999999999999999999988753 3678888999999999999999
Q ss_pred HHHHHHHHhcCCCCcH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------
Q 030489 82 TMMFSKMLEKGPKANV---VTYSCLI------------DGYFKSQNMKSAFDVYEEMCENNISPNIA------------- 133 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------- 133 (176)
.+.|+++.+..+. +. ..+..+. ..+.+.|++++|...|+++.... |...
T Consensus 114 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 114 EDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHC
Confidence 9999999987543 44 5666654 44889999999999999987643 3322
Q ss_pred CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
|++++|+++|+++.+.. ..+..++..+...+...|+.++|
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998642 34577889999999999998776
No 13
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=8.6e-14 Score=91.57 Aligned_cols=171 Identities=11% Similarity=-0.039 Sum_probs=136.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc-CCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE-GRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~ 80 (176)
+.+.|++++|.+.|+.+.+.. +.+...+..+...+...|++++|++.+++..+.. +.+..++..+...+... |++++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHH
Confidence 467899999999999998764 4468899999999999999999999999988764 33677888899999999 99999
Q ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 81 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~ 148 (176)
|...++++.+.+..| +..++..+..++...|++++|...++++.+........ |++++|...+++..+
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998832222 46788899999999999999999999987653221111 999999999999986
Q ss_pred CCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 149 NGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 149 ~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.....+...+..+...+...|+.+.|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 176 RVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 53214566677777777777776544
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.61 E-value=5e-14 Score=102.00 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=139.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.++|+.+.+.. +.+..++..+..+|.+.|++++|+.+|+++.+.. +.+..++..+..+|...|++++|
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999998764 4478899999999999999999999999988763 34788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------------
Q 030489 82 TMMFSKMLEKGPKANVVTYSCL------------IDGYFKSQNMKSAFDVYEEMCENNISPNIA---------------- 133 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------- 133 (176)
...|+++.+.... +...+..+ ...|.+.|++++|...|+++.... |+..
T Consensus 231 ~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 231 LSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHH
Confidence 9999999877543 55556555 889999999999999999998743 3321
Q ss_pred -CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 -GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 -~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
|++++|+..++++.+.. +.+...+..+..+|...|++++|
T Consensus 308 ~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999988642 33578889999999999998876
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=6.5e-14 Score=99.01 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=122.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.++|+++.+.. +.+..+|..+..++...|++++|+..|++..+.. +.+..++..+..+|...|++++|
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHH
Confidence 456788888888888887764 3467888888888888888888888888877654 23567777888888888888888
Q ss_pred HHHHHHHHhcCCC------------------------------------------C---cHHHHHHHHHHHHhcCCHHHH
Q 030489 82 TMMFSKMLEKGPK------------------------------------------A---NVVTYSCLIDGYFKSQNMKSA 116 (176)
Q Consensus 82 ~~~~~~~~~~~~~------------------------------------------~---~~~~~~~l~~~~~~~g~~~~a 116 (176)
.+.|+++.+.... | +..++..+...|.+.|++++|
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 8887776653210 1 466777777888888888888
Q ss_pred HHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 117 FDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 117 ~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
...+++..+.. |+.. |++++|+..|++..+. .|+ ..++..+..+|.+.|+.++|
T Consensus 233 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 233 IDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 88888776542 3222 8888888888888764 333 66777788888888887765
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.59 E-value=2.1e-13 Score=94.70 Aligned_cols=169 Identities=12% Similarity=0.117 Sum_probs=141.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC-CHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG-RMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~ 80 (176)
+...|++++|.++|+++.+.. +.+...+..++..+...|++++|+.+++++.+.. +.+...+..+...+...| ++++
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHH
Confidence 456799999999999998774 4467778888899999999999999999998764 336778888999999999 9999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHC
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~ 149 (176)
|.+.|++..+.... +..+|..+...|...|++++|...+++........... |++++|.+.+++..+.
T Consensus 110 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 110 ARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999987644 77889999999999999999999999988754332221 9999999999999865
Q ss_pred CCCCcHHHHHHHHHHhhcccCcccc
Q 030489 150 GIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 150 g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
. +.+...+..+...+...|++++|
T Consensus 189 ~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 189 A-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred C-CCChHHHHHHHHHHHHcccHHHH
Confidence 3 33567888999999999998776
No 17
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.1e-14 Score=93.83 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=136.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--cC----hhhHHHHHHHHHhc
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK--PN----SITFTILIDAFCKE 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~~~ll~~~~~~ 75 (176)
+.+.|++++|.++|++..+.. .+..+|..+..++...|++++|+..+++..+.... ++ ..++..+...+.+.
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 457899999999999998876 68889999999999999999999999988764211 12 57888889999999
Q ss_pred CCHHHHHHHHHHHHhcC-------------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 030489 76 GRMDDATMMFSKMLEKG-------------------------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 130 (176)
|++++|...|++..+.. .+.+...+..+...+...|++++|...+++........
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 99999999999988732 22355678888899999999999999999987653221
Q ss_pred CCC-----------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 131 NIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 131 ~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
... |++++|...+++..+.. +.+...+..+...+...|+.++|
T Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 111 99999999999998652 23467888888999999988766
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=7.7e-14 Score=96.27 Aligned_cols=161 Identities=15% Similarity=0.161 Sum_probs=110.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+.+.++.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 345677788888888877665333 566666777778888888888888866 3567777777888888888888
Q ss_pred HHHHHHHHHhcCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVT--YSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDS 145 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~ 145 (176)
|.+.|+++.+.... +... ...++..+...|++++|..+|+++.+. .|+.. |++++|.+.|++
T Consensus 149 A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 149 ARKELKKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776422 2111 112233444457888888888888765 23332 888888888888
Q ss_pred HHHCCCCC-cHHHHHHHHHHhhcccCccc
Q 030489 146 MLRNGIMP-DGLLLSTLADYNLQSSGSQE 173 (176)
Q Consensus 146 m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 173 (176)
..+. .| +..++..+...+...|+.++
T Consensus 226 al~~--~p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 226 ALDK--DSGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCCHH
Confidence 7754 33 45577777777777777654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.58 E-value=2.9e-13 Score=95.50 Aligned_cols=110 Identities=19% Similarity=0.115 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC--------
Q 030489 62 SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133 (176)
Q Consensus 62 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------- 133 (176)
..++..+...+.+.|++++|...|++..+..+. +..+|..+...|.+.|++++|...+++..... |+..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~ 293 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGI 293 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 344444555555555555555555555554322 44555555555555555555555555554432 2211
Q ss_pred -----CChHHHHHHHHHHHHCCCCC----------cHHHHHHHHHHhhcccCcccc
Q 030489 134 -----GRPTEAMQLYDSMLRNGIMP----------DGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 -----~~~~~a~~~~~~m~~~g~~p----------~~~~~~~l~~~~~~~g~~~~A 174 (176)
|++++|...|++..+..... ...++..+..++...|+.++|
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 66666666666665321100 135566666666666666554
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=5.9e-13 Score=85.44 Aligned_cols=150 Identities=14% Similarity=0.162 Sum_probs=127.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.|++++|++.|++..+.. |-+..+|..+..+|.+.|++++|+..+......... +...+..+...+...++++.|
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 92 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEKQAA 92 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999998875 347899999999999999999999999998876433 667777788889999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~ 148 (176)
.+.+.+..+..+. +...+..+...|.+.|++++|++.|++..+.. |+.. |++++|++.|++..+
T Consensus 93 ~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 93 IDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999988654 88899999999999999999999999988753 3333 999999999999987
Q ss_pred CCCCCcHHHH
Q 030489 149 NGIMPDGLLL 158 (176)
Q Consensus 149 ~g~~p~~~~~ 158 (176)
. .|+...|
T Consensus 170 ~--~p~~a~~ 177 (184)
T 3vtx_A 170 K--EEKKAKY 177 (184)
T ss_dssp T--THHHHHH
T ss_pred C--CccCHHH
Confidence 5 5655433
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.58 E-value=5.7e-13 Score=94.00 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=126.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..++...|++++|
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 456788888888888888774 4477888888888888888888888888887764 33677788888888888888888
Q ss_pred HHHHHHHHhcCCC-----------------------------------------------C---cHHHHHHHHHHHHhcC
Q 030489 82 TMMFSKMLEKGPK-----------------------------------------------A---NVVTYSCLIDGYFKSQ 111 (176)
Q Consensus 82 ~~~~~~~~~~~~~-----------------------------------------------~---~~~~~~~l~~~~~~~g 111 (176)
.+.++++.+.... | +..++..+...|.+.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 8888776654321 1 4667777888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 112 NMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 112 ~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
++++|...+++..... |+.. |++++|...|+++.+.. +.+...+..+...+.+.|++++|
T Consensus 232 ~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888876642 3322 88888888888887642 23466778888888888887765
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=8.1e-13 Score=91.15 Aligned_cols=160 Identities=11% Similarity=0.139 Sum_probs=129.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC-hhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-SITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 80 (176)
|...|+++.|+..++. . -+|+..++..+...+...++.++|++.++++...+..|+ ...+..+...+...|++++
T Consensus 44 yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~ 119 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDA 119 (291)
T ss_dssp HHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHH
Confidence 5678899998876644 2 366788888999999999999999999999887765454 4555666688899999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------------CChHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------------GRPTEAMQLYDS 145 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------~~~~~a~~~~~~ 145 (176)
|.+.+++ +.+..++..+...|.+.|++++|.+.++++.... |+.. |++++|..+|++
T Consensus 120 Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 120 ALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999987 4578889999999999999999999999988764 3332 789999999999
Q ss_pred HHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 146 MLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 146 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+.+. .+.+...++.+..++.+.|++++|
T Consensus 192 ~l~~-~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 192 MADK-CSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHh-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 9865 345677888899999999998876
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.2e-12 Score=87.76 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=128.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-ChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 80 (176)
|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|+++++++...+..| +...+..+..++...|++++
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 567899999999999998775 3478899999999999999999999999998733344 56778888899999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSML 147 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~ 147 (176)
|.+.|++..+.... +..++..+...|...|++++|...+++..... |+.. |+.++|.++++++.
T Consensus 160 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 160 AKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999987644 78899999999999999999999999987643 3322 99999999999998
Q ss_pred HCCCCCcHHHHHHH
Q 030489 148 RNGIMPDGLLLSTL 161 (176)
Q Consensus 148 ~~g~~p~~~~~~~l 161 (176)
+. .|+...+..+
T Consensus 237 ~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 237 RL--YPGSLEYQEF 248 (252)
T ss_dssp HH--CTTSHHHHHH
T ss_pred HH--CCCCHHHHHH
Confidence 75 4655554443
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.55 E-value=4.9e-13 Score=92.80 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=141.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+.+.|++++|..+++++.+.. +.+...|..+...+...| ++++|++.|++..+.. +.+...+..+...+...|++++
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHH
Confidence 457899999999999998874 447888999999999999 9999999999998764 3367788999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSML 147 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~ 147 (176)
|.+.|++..+.... +..++..+...|...|++++|...+++..... |+.. |++++|...+++..
T Consensus 144 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 144 AMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999988644 66778889999999999999999999988753 3333 99999999999988
Q ss_pred HCC--------CCCcHHHHHHHHHHhhcccCcccc
Q 030489 148 RNG--------IMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 148 ~~g--------~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+.. ......++..+...+...|+.++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 531 123356888999999999998876
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=1.5e-13 Score=97.20 Aligned_cols=169 Identities=14% Similarity=0.097 Sum_probs=135.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-----------------------
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL----------------------- 58 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----------------------- 58 (176)
|.+.|++++|++.|++..+.. +.+..+|..+..+|...|++++|+..|+++.+...
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 456788999999998888764 34678888888888888888888888887754210
Q ss_pred -------------------Cc---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 030489 59 -------------------KP---NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (176)
Q Consensus 59 -------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 116 (176)
.| +..++..+...+...|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 12 5778888999999999999999999999988644 788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCC---C--------CcHHHHHHHHHHhhcccCcc
Q 030489 117 FDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGI---M--------PDGLLLSTLADYNLQSSGSQ 172 (176)
Q Consensus 117 ~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~~~ 172 (176)
...|++..... |+.. |++++|...|++..+... . .+...+..+..++...|+.+
T Consensus 267 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 267 VEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 99999988753 3333 999999999999984311 1 13567888888888888876
Q ss_pred cc
Q 030489 173 EH 174 (176)
Q Consensus 173 ~A 174 (176)
+|
T Consensus 345 ~a 346 (365)
T 4eqf_A 345 LF 346 (365)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.54 E-value=6.7e-13 Score=92.97 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=137.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|+.+.+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHH
Confidence 467899999999999998864 4478899999999999999999999999988764 23668888899999999999999
Q ss_pred HHHHHHHHhcCCC--CcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CCh
Q 030489 82 TMMFSKMLEKGPK--ANVVTYSCL------------IDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRP 136 (176)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~ 136 (176)
...|++..+..+. .+...+..+ ...+...|++++|..+++++.......... |++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 91 EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCH
Confidence 9999999887530 255555555 578899999999999999987653221111 999
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 137 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
++|...+++..+.. +.+..++..+...+...|++++|
T Consensus 171 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 171 RKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999998652 34567888888999998888765
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.4e-12 Score=94.47 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=135.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|++.|+++.+.+ |+..+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 567899999999999999874 689999999999999999999999999998865 33677899999999999999999
Q ss_pred HHHHHHHHhcCCCC------------------------------------------------------------------
Q 030489 82 TMMFSKMLEKGPKA------------------------------------------------------------------ 95 (176)
Q Consensus 82 ~~~~~~~~~~~~~~------------------------------------------------------------------ 95 (176)
...|+++.+.+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 93 MFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 99999987665311
Q ss_pred ------------cHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCCCCCC--------------------CC
Q 030489 96 ------------NVVTYSCLIDGYFK---SQNMKSAFDVYEEMCE-----NNISPNIA--------------------GR 135 (176)
Q Consensus 96 ------------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~~~~~~--------------------~~ 135 (176)
+...+......+.. .|++++|..+++++.. ....|+.. |+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 12333333333443 7999999999999887 43333331 99
Q ss_pred hHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCccccC
Q 030489 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 175 (176)
+++|..+++++.+.. |+...+..+...+...|++++|.
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGG
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999998763 44778888999999999988873
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.54 E-value=1.5e-12 Score=90.25 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+..+...+.+.|++++|.+.+++..+.... +..+|..+...|...|++++|...+++..+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444455555555555554444322 344455555555555555555555554443
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.53 E-value=1.9e-12 Score=90.63 Aligned_cols=169 Identities=12% Similarity=0.098 Sum_probs=134.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.++++.+.+.. +.+..++..+...+...|++++|+..++...+.. +.+..++..+...+...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 456789999999999998764 4478889999999999999999999999988764 34778888899999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------------C
Q 030489 82 TMMFSKMLEKGPKANVVTYSC------------LIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------------G 134 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------~ 134 (176)
.+.|++..+.... +...+.. +...+.+.|++++|...+++........... |
T Consensus 208 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 208 LSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHcc
Confidence 9999999877543 4444443 2667888999999999999887654321100 9
Q ss_pred ChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 135 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
++++|.+.+++..+.. +.+..++..+...+...|++++|
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999998652 23567888888999999988776
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.1e-12 Score=87.53 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=136.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh----hHHHHHHHHHhcCC
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI----TFTILIDAFCKEGR 77 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~ 77 (176)
+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|+..+++..+.+ ++.. .|..+...+...|+
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHccc
Confidence 467899999999999999875 3366689999999999999999999999998843 3333 37889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHH
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYD 144 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~ 144 (176)
+++|.+.|++..+.... +..+|..+...|...|++++|...+++..+. .|... +++++|.+.|+
T Consensus 90 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988654 7789999999999999999999999988664 34333 79999999999
Q ss_pred HHHHCCCCCc-HHHHHHHHHHhhcccC---cccc
Q 030489 145 SMLRNGIMPD-GLLLSTLADYNLQSSG---SQEH 174 (176)
Q Consensus 145 ~m~~~g~~p~-~~~~~~l~~~~~~~g~---~~~A 174 (176)
+..+. .|+ ...+..+...+...|+ .++|
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A 198 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLA 198 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHH
Confidence 99865 344 5666777777777776 5544
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=4.9e-13 Score=88.36 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=127.2
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
|++...+..+...+.+.|++++|+..|++..+... .+...+..+..++.+.|++++|...|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 56778899999999999999999999999987653 37788889999999999999999999999988755 88899999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCCCcHHHHH
Q 030489 104 IDGYFKS-----------QNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPDGLLLS 159 (176)
Q Consensus 104 ~~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~p~~~~~~ 159 (176)
..+|.+. |++++|+..+++..+.. |+.. |++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 9999999 99999999999988753 4433 99999999999999776 6788899
Q ss_pred HHHHHhhcccCcccc
Q 030489 160 TLADYNLQSSGSQEH 174 (176)
Q Consensus 160 ~l~~~~~~~g~~~~A 174 (176)
.+..++...|+.++|
T Consensus 156 ~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 156 ALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCHHHH
Confidence 999999999998876
No 32
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=2.9e-12 Score=84.21 Aligned_cols=156 Identities=17% Similarity=0.073 Sum_probs=128.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCc-ChhhHHHHHHHHHhcCCHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL-NRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~ 79 (176)
|...|++++|.+.+++..+.. +.+..++..+...+... |++++|+..++++.+.+..| +...+..+..++...|+++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 467899999999999998764 44788999999999999 99999999999998832233 3677888899999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSM 146 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m 146 (176)
+|...+++..+.... +...+..+...|.+.|++++|...+++....... +.. |+.+.+..+++.+
T Consensus 131 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999987544 7889999999999999999999999998765320 222 9999999999998
Q ss_pred HHCCCCCcHHHHHHHH
Q 030489 147 LRNGIMPDGLLLSTLA 162 (176)
Q Consensus 147 ~~~g~~p~~~~~~~l~ 162 (176)
.+. .|+...+..++
T Consensus 209 ~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QAN--FPYSEELQTVL 222 (225)
T ss_dssp HHH--CTTCHHHHHHH
T ss_pred HHh--CCCCHHHHHHh
Confidence 754 56655554443
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=1.2e-12 Score=88.76 Aligned_cols=144 Identities=14% Similarity=0.039 Sum_probs=109.9
Q ss_pred hhhCChhHHHHHHHHHhhCCC---CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH
Q 030489 3 IKECHLDAALKLFGQLTDRGL---EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 79 (176)
...|++++|++.|+++.+... +.+..+|..+...+...|++++|+..|++..+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 346788899999998887632 2256778888888999999999999998888764 236778888888899999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CChHHHHHHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~~a~~~~~~m~~ 148 (176)
+|...|++..+.... +..++..+...|.+.|++++|...++++.......... |++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999988887543 67888888889999999999999998887643222111 667777777755543
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.50 E-value=5.3e-12 Score=87.46 Aligned_cols=168 Identities=16% Similarity=0.095 Sum_probs=119.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|++.+++..+.. +.+..++..+...+...|++++|
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 345677888888887777654 3366777777777788888888888887777653 23566666777777777777777
Q ss_pred HHHHHHHHhcCC------------------------------------------------CCcHHHHHHHHHHHHhcCCH
Q 030489 82 TMMFSKMLEKGP------------------------------------------------KANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 82 ~~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~g~~ 113 (176)
.+.+++..+... +.+..++..+...|.+.|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 188 (327)
T 3cv0_A 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY 188 (327)
T ss_dssp HHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Confidence 666666543211 22567778888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 114 KSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 114 ~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
++|...+++..... |+.. |++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 189 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 189 DSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 99998888887643 3222 88999999998887642 23466788888888888887765
No 35
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=3.1e-12 Score=81.50 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=120.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 95 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLA 95 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHH
Confidence 457899999999999988764 4478889999999999999999999999988764 33677888889999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~ 148 (176)
.+.+++..+... .+...+..+...|...|++++|...+++..... |... |++++|.+.+++..+
T Consensus 96 ~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 96 VPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988754 478889999999999999999999999987653 2222 889999999888874
Q ss_pred C
Q 030489 149 N 149 (176)
Q Consensus 149 ~ 149 (176)
.
T Consensus 173 ~ 173 (186)
T 3as5_A 173 L 173 (186)
T ss_dssp H
T ss_pred c
Confidence 3
No 36
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.50 E-value=4.6e-12 Score=76.48 Aligned_cols=122 Identities=20% Similarity=0.342 Sum_probs=105.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.++|+++.+.+ +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+...|++++|
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 88 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEA 88 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHH
Confidence 467899999999999998764 3478888999999999999999999999988764 33677888889999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+.++++.+.... +..++..+...+.+.|++++|...++++...
T Consensus 89 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 89 IEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999887543 7788999999999999999999999988764
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=3.7e-12 Score=84.76 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=126.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|++..+.. +.+..++..+...+...|++++|++.+++..+.. +.+...+..+...+.+.|++++|
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 467899999999999998774 4478999999999999999999999999988764 34678888899999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~ 148 (176)
...+++..+.... +...+..+...|.+.|++++|...+++..... |+.. |++++|.+.+++..+
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 145 LPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999999987544 78899999999999999999999999987653 2222 999999999999987
Q ss_pred CCCCCcHH
Q 030489 149 NGIMPDGL 156 (176)
Q Consensus 149 ~g~~p~~~ 156 (176)
. .|+..
T Consensus 222 ~--~p~~~ 227 (243)
T 2q7f_A 222 I--QPDHM 227 (243)
T ss_dssp H--CTTCH
T ss_pred c--CcchH
Confidence 5 44433
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.48 E-value=2.2e-12 Score=95.25 Aligned_cols=169 Identities=16% Similarity=0.115 Sum_probs=120.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|+...+.. +.+..+|..+...+...|++++|+..+++..+... .+..++..+..++...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 445677888888888777654 33677777888888888888888888887776532 2456777777888888888888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC----C-----------------------C
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----A-----------------------G 134 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~-----------------------~ 134 (176)
...+++..+.... +..++..+...|...|++++|...+++.......... . |
T Consensus 364 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 8888888776533 6677888888888888888888888876543211111 0 6
Q ss_pred ChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 135 RPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 135 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
++++|...|++..+.. +.+...+..+...+...|+.++|
T Consensus 443 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 443 KFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 6778888888887542 23456778888888888887765
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=2.4e-12 Score=87.21 Aligned_cols=169 Identities=13% Similarity=-0.039 Sum_probs=126.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|++..+.. +.+..+|..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHH
Confidence 457899999999999998875 4478999999999999999999999999998864 23678889999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CChHHHHHHHHHHHHCCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------GRPTEAMQLYDSMLRNGI 151 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~~a~~~~~~m~~~g~ 151 (176)
...|+++.+... +.......+..+...|++++|...+++........... ++.++|++.+.+......
T Consensus 131 ~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 131 QDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 999999998753 33344445556677799999999998776543222111 556667777766654311
Q ss_pred C--C-cHHHHHHHHHHhhcccCcccc
Q 030489 152 M--P-DGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 152 ~--p-~~~~~~~l~~~~~~~g~~~~A 174 (176)
. | +..++..+...+.+.|+.++|
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A 234 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSA 234 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccccHHHHHHHHHHHHcCCHHHH
Confidence 1 0 135666677777777776655
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=7.8e-12 Score=80.14 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=124.5
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+..+|..+...|.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|...++........ +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 6788999999999999999999999998887533 7788999999999999999999999999988655 7888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 106 GYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.+...++++.+...+.+........... |++++|++.|++..+.. +-+..++..+..++.+.|+.++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987643222111 99999999999998752 23467888999999999998876
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.2e-12 Score=90.09 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=115.4
Q ss_pred chhhCChhHHHHHHHHHhhC-------CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC------C-CCcChhhHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR-------GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV------Q-LKPNSITFTI 67 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ 67 (176)
+...|++++|..+|+++.+. ..+....++..+...|...|++++|+..+++.... + .+....++..
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 46789999999999998873 23445778889999999999999999999887753 2 2234567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc------CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCCC-
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEK------GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------NISPNIA- 133 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~- 133 (176)
+...|...|++++|...+++..+. +. +....++..+...|...|++++|..++++.... +..|...
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 889999999999999999988764 22 234566888899999999999999999988653 1122211
Q ss_pred ------------CChHHHHHHHHHHHH
Q 030489 134 ------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 134 ------------~~~~~a~~~~~~m~~ 148 (176)
|++++|.++++++.+
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999988874
No 42
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.3e-12 Score=95.91 Aligned_cols=169 Identities=14% Similarity=0.032 Sum_probs=140.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.++|+++.+..+. ..++..+...+...|++++|+..+++..... +.+..++..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 45789999999999999887533 8899999999999999999999999998764 33677889999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRNG 150 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~g 150 (176)
...|++..+.... +..++..+...|...|++++|...++++.......... |++++|...++++.+..
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 324 GKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 9999999987654 77899999999999999999999999987653221111 99999999999987532
Q ss_pred C-CCc----HHHHHHHHHHhhc---ccCcccc
Q 030489 151 I-MPD----GLLLSTLADYNLQ---SSGSQEH 174 (176)
Q Consensus 151 ~-~p~----~~~~~~l~~~~~~---~g~~~~A 174 (176)
. .++ ...+..+...+.. .|++++|
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 1 122 3378888888888 8887765
No 43
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=5.3e-12 Score=96.78 Aligned_cols=141 Identities=11% Similarity=0.106 Sum_probs=116.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.... +...|..+..++.+.|++++|
T Consensus 19 ~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A 96 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGA 96 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999988774 336888999999999999999999999988876422 577888899999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSML 147 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~ 147 (176)
.+.|++..+.... +..+|+.+..+|.+.|++++|++.|++..+. .|+.. +++++|.+.+++..
T Consensus 97 ~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 97 LQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 9999999888655 7888999999999999999999999988764 34433 77777777776665
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=1.7e-12 Score=95.23 Aligned_cols=167 Identities=11% Similarity=-0.004 Sum_probs=137.7
Q ss_pred chhhCCh-hHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc-----
Q 030489 2 LIKECHL-DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE----- 75 (176)
Q Consensus 2 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----- 75 (176)
|...|++ ++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+. .|+...+..+...+...
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~ 188 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSG 188 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCH
T ss_pred HHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCCh
Confidence 4567899 99999999998874 336889999999999999999999999999876 46678888889999999
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC-CCCC---------
Q 030489 76 ----GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS--------QNMKSAFDVYEEMCENNIS-PNIA--------- 133 (176)
Q Consensus 76 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~-~~~~--------- 133 (176)
|++++|.+.|++..+.... +...|..+..+|... |++++|+..|++....... ++..
T Consensus 189 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~ 267 (474)
T 4abn_A 189 DEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 9999999999999988654 788999999999998 9999999999998875321 0222
Q ss_pred ----CChHHHHHHHHHHHHCCCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 134 ----GRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ----~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
|++++|++.|++..+. .|+ ...+..+...+...|+.++|
T Consensus 268 ~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 268 HKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 344 45667777777777766654
No 45
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=1.4e-11 Score=81.63 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=105.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|++..+...+++...+..+..++...|++++|+..+++..+.... +...+..+..++...|++++|
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A 95 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEY 95 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHH
Confidence 4578999999999999998765468888888999999999999999999999876433 667888899999999999999
Q ss_pred HHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGPKANV-------VTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+.|++..+..+. +. ..|..+-..+...|++++|+..|++..+.
T Consensus 96 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 96 IATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999987544 55 56888888899999999999999998765
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=8.4e-12 Score=83.63 Aligned_cols=158 Identities=14% Similarity=0.212 Sum_probs=126.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCC--cc----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCC------------------
Q 030489 2 LIKECHLDAALKLFGQLTDRGLE--PD----IITYNTIICGYCSLNRLDEAVQLFEKLTCVQ------------------ 57 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------------------ 57 (176)
+.+.|++++|.+.|++..+.... ++ ..+|..+...+...|++++|+..|++.....
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence 56789999999999998875321 11 6889999999999999999999999988732
Q ss_pred -------CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 030489 58 -------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (176)
Q Consensus 58 -------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 130 (176)
.+.+...+..+...+...|++++|...|++..+.... +..+|..+..+|.+.|++++|...+++..+.. |
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~ 204 (258)
T 3uq3_A 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--P 204 (258)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--H
Confidence 1224566778888999999999999999999988654 78899999999999999999999999988754 3
Q ss_pred CCC-------------CChHHHHHHHHHHHHCC----CCCcHHHHHHHH
Q 030489 131 NIA-------------GRPTEAMQLYDSMLRNG----IMPDGLLLSTLA 162 (176)
Q Consensus 131 ~~~-------------~~~~~a~~~~~~m~~~g----~~p~~~~~~~l~ 162 (176)
+.. |++++|.+.+++..+.. ..|+.......+
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 333 99999999999987542 226655444443
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=1.7e-11 Score=94.03 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=127.2
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
|-+..+|+.+...+.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|++.|++..+.... +..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 335789999999999999999999999999886432 6788999999999999999999999999998755 78999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCCCc-HHHHHHHHHHhhccc
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSS 169 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 169 (176)
..+|.+.|++++|++.|++..+. .|+.. |++++|++.|++..+. .|+ ...+..+..++...|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc
Confidence 99999999999999999998875 34443 9999999999999975 455 568889999999999
Q ss_pred Ccccc
Q 030489 170 GSQEH 174 (176)
Q Consensus 170 ~~~~A 174 (176)
++++|
T Consensus 160 ~~~~A 164 (723)
T 4gyw_A 160 DWTDY 164 (723)
T ss_dssp CCTTH
T ss_pred cHHHH
Confidence 99886
No 48
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.41 E-value=5.4e-14 Score=100.93 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=46.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.+++..++. .+++.+.+.|+.+|.+.|+++++
T Consensus 42 ~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~ 113 (449)
T 1b89_A 42 QLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAEL 113 (449)
T ss_dssp ---------------------------------------------------------------------------CHHHH
T ss_pred HHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHH
Confidence 4455566666666643 235556666666666666666666655444432 33455566666666666666666
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---------CChHHHHHHHHHHHHCCCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---------GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------~~~~~a~~~~~~m~~~g~~ 152 (176)
.++++ .|+..+|+.+...|...|.|++|..+|..+ ++.. |++++|.+.++++
T Consensus 114 e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA------ 174 (449)
T 1b89_A 114 EEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA------ 174 (449)
T ss_dssp TTTTT-------CC----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred HHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHHHc------
Confidence 65553 245567777777777777777777777755 1111 8899999999888
Q ss_pred CcHHHHHHHHHHhhcccCcccc
Q 030489 153 PDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 153 p~~~~~~~l~~~~~~~g~~~~A 174 (176)
.++.+|..++.+|...|++++|
T Consensus 175 ~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 175 NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCchhHHHHHHHHHHcCcHHHH
Confidence 2678999999999999988776
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=8.3e-11 Score=79.95 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=56.8
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh----c
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----E 75 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~ 75 (176)
+.|++++|.+.|++..+. -+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .
T Consensus 18 ~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVS 91 (273)
T ss_dssp HTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred hCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcc
Confidence 345555555555555442 133444455555555 555555555555554443 34444445555555 5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 126 (176)
+++++|.+.|++..+.+ +..++..+...|.. .+++++|+..|++..+.
T Consensus 92 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 92 QNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 55555555555554442 34445555555555 55555555555554443
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=5.4e-11 Score=82.50 Aligned_cols=161 Identities=13% Similarity=0.224 Sum_probs=124.0
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC-hh-hHHHHHHHHHhcCCHHHHHHHHH
Q 030489 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-SI-TFTILIDAFCKEGRMDDATMMFS 86 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~ 86 (176)
++|..+|++..+.-.+-+...|..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999988412346779999999999999999999999999875 444 33 78889999999999999999999
Q ss_pred HHHhcCCCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCC-C
Q 030489 87 KMLEKGPKANVVTYSCLIDGYF-KSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNG-I 151 (176)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g-~ 151 (176)
+..+... .+...|........ ..|++++|..+|++..+.. |+.. |+.++|..+|++..... +
T Consensus 159 ~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 9988754 35555554433322 3699999999999887642 3332 89999999999999763 4
Q ss_pred CCc--HHHHHHHHHHhhcccCcccc
Q 030489 152 MPD--GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 152 ~p~--~~~~~~l~~~~~~~g~~~~A 174 (176)
.|+ ...+..++....+.|+.+.|
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 553 55777788888888876654
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=1.9e-10 Score=78.14 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=132.7
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh----cC
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EG 76 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 76 (176)
.+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 789999999999998875 78888999999999 999999999999998875 67788888899998 99
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-------------CCCChHHH
Q 030489 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPN-------------IAGRPTEA 139 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~-------------~~~~~~~a 139 (176)
++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+.... ..+++++|
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 9999999999999876 56788888888888 8999999999999877642110 02789999
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHhhc----ccCcccc
Q 030489 140 MQLYDSMLRNGIMPDGLLLSTLADYNLQ----SSGSQEH 174 (176)
Q Consensus 140 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 174 (176)
+..|++..+.+. ...+..+...+.. .++.++|
T Consensus 206 ~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 206 LARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHH
Confidence 999999987642 5667777777877 7887776
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=1.6e-11 Score=87.73 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=126.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+.+.|++++|++.|++..+.. +-+..+|+.+..++...|+ +++|+..|++..+.... +...|+.+..++.+.|++++
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTT
T ss_pred HHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHH
Confidence 345788999999999988775 3378889999999999996 99999999998876533 67888888888999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHH-----HHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEA-----MQLY 143 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a-----~~~~ 143 (176)
|+..|++.++.+.. +..+|..+..++.+.|++++|+..++++...+...... |..++| ++.+
T Consensus 185 Al~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~ 263 (382)
T 2h6f_A 185 ELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 263 (382)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 99999999988765 88889999999999999999999999887754322221 443666 4777
Q ss_pred HHHHHCCCCCc-HHHHHHHHHHhhccc
Q 030489 144 DSMLRNGIMPD-GLLLSTLADYNLQSS 169 (176)
Q Consensus 144 ~~m~~~g~~p~-~~~~~~l~~~~~~~g 169 (176)
++.... .|+ ...|..+...+...|
T Consensus 264 ~~Al~l--~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 264 LEMIKL--VPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHTTTC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHccC
Confidence 777754 444 446666666666665
No 53
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.39 E-value=1.9e-11 Score=90.22 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=130.3
Q ss_pred CChhHHHHHHHHHhhCCCCcc-------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 6 CHLDAALKLFGQLTDRGLEPD-------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
|++++|..+|+.+.+..+. + ..++..+...+...|++++|+..+++..+. .|+..++..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 5788999999998876432 3 235777778888999999999999998876 45678888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSML 147 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~ 147 (176)
++|.+.|++..+.... +..+|..+...|...|++++|...+++........... |++++|.++++++.
T Consensus 293 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999887644 78889999999999999999999999987753221111 99999999999998
Q ss_pred HCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 148 RNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 148 ~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+.. +.+...+..+...+...|++++|
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 652 23456788888889998888766
No 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=3.6e-12 Score=86.45 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=100.1
Q ss_pred hhCChhHHHHHHHHHhhC-------CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC------CC-CcChhhHHHHH
Q 030489 4 KECHLDAALKLFGQLTDR-------GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV------QL-KPNSITFTILI 69 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll 69 (176)
..|++++|+++|++..+. ..+....++..+...|...|++++|+..+++.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 356666666666665542 22335677888888888888888888888877643 11 22455677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCCC---
Q 030489 70 DAFCKEGRMDDATMMFSKMLEK------G-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------NISPNIA--- 133 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~--- 133 (176)
..|...|++++|.+.|++..+. . .+....++..+...|...|++++|...+++.... +..|...
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877654 1 1234567788888888888888888888877653 1111111
Q ss_pred ----------CChHHHHHHHHHHHH
Q 030489 134 ----------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 134 ----------~~~~~a~~~~~~m~~ 148 (176)
|++++|.+++++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888887764
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=2.8e-11 Score=81.95 Aligned_cols=169 Identities=12% Similarity=0.039 Sum_probs=131.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 79 (176)
|.+.|++++|++.+++..+....+ ...+|..+...+...|++++|+..|++..+... .+..++..+...|...|+++
T Consensus 47 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 47 YYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHH
Confidence 567899999999999998843222 244589999999999999999999999987643 36678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CC---hHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GR---PTEAMQLY 143 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~---~~~a~~~~ 143 (176)
+|.+.|++..+... .+..+|..+...+...+++++|...|++..+.. |+.. ++ .++|...+
T Consensus 126 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 126 LAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 99999999988754 377788888834444569999999999988753 3322 55 77788888
Q ss_pred HHHHHCC-CCCc------HHHHHHHHHHhhcccCcccc
Q 030489 144 DSMLRNG-IMPD------GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 144 ~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A 174 (176)
++..+.. -.|+ ...|..+...+...|+.++|
T Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8887431 1233 25777888889999988776
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=8.2e-11 Score=79.55 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=124.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-C-cChhhHHHHHHHHHh--
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD---IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-K-PNSITFTILIDAFCK-- 74 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~-~~~~~~~~ll~~~~~-- 74 (176)
+.+.|++++|.+.|+.+.+..+. + ...+..+..++.+.|++++|+..|++..+... . .....+..+..++..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 45789999999999999987422 3 77888999999999999999999999987632 1 224567777888888
Q ss_pred ------cCCHHHHHHHHHHHHhcCCCCcHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 030489 75 ------EGRMDDATMMFSKMLEKGPKANVVTY-----------------SCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (176)
Q Consensus 75 ------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 131 (176)
.|++++|...|+++.+..+. +.... ..+...|.+.|++++|+..|+++........
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred ccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 99999999999999987543 33444 5567889999999999999999987543322
Q ss_pred CC------------------------CChHHHHHHHHHHHHCCCCCcHH----HHHHHHHHhhcccCcc
Q 030489 132 IA------------------------GRPTEAMQLYDSMLRNGIMPDGL----LLSTLADYNLQSSGSQ 172 (176)
Q Consensus 132 ~~------------------------~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~ 172 (176)
.. |++++|...|+++.+. .|+.. ....+-..+...++.+
T Consensus 183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhh
Confidence 21 4568899999999865 45542 3444444554444443
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.6e-10 Score=73.47 Aligned_cols=122 Identities=18% Similarity=0.142 Sum_probs=107.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHH
Confidence 457899999999999998764 4478899999999999999999999999988764 34778888899999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
...+++..+... .+..++..+...|...|++++|...+++..+.
T Consensus 130 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 130 IDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999998754 37889999999999999999999999987653
No 58
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.33 E-value=6.7e-11 Score=77.57 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=119.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHH----------------HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNT----------------IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF 65 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 65 (176)
+.+.|++++|+..|++..+.. |-+...|.. +..++.+.|++++|+..|++..+... -+...+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 457899999999999998863 225666777 89999999999999999999988753 377889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCCC----------
Q 030489 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDVYEEMCENNISPNIA---------- 133 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~---------- 133 (176)
..+..++...|++++|...|++..+..+. +..+|..+..+|...|+ .+.+...++... .|+..
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHH
Confidence 99999999999999999999999998755 88899999888876654 344555555443 22211
Q ss_pred ----CChHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 030489 134 ----GRPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163 (176)
Q Consensus 134 ----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 163 (176)
|++++|...|++..+. .|+......+..
T Consensus 167 ~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 7899999999999864 788766555444
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=2.8e-10 Score=75.29 Aligned_cols=144 Identities=12% Similarity=-0.002 Sum_probs=120.1
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 030489 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (176)
Q Consensus 25 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (176)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.|++..+..+. +..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678899999999999999999999999988765467888888999999999999999999999988655 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-------CC-----------CChHHHHHHHHHHHHCCCCCc---HHHHHHHHH
Q 030489 105 DGYFKSQNMKSAFDVYEEMCENNISPN-------IA-----------GRPTEAMQLYDSMLRNGIMPD---GLLLSTLAD 163 (176)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~m~~~~~~~~-------~~-----------~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~ 163 (176)
.+|...|++++|+..+++..+...... .. |++++|++.|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999887543322 00 9999999999999865 666 456666777
Q ss_pred HhhcccCc
Q 030489 164 YNLQSSGS 171 (176)
Q Consensus 164 ~~~~~g~~ 171 (176)
.+...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 60
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=2.7e-10 Score=68.52 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
..|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|...++++.+.+.. +...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 357788899999999999999999988764 336778888899999999999999999999987643 778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCCC-----------CChHHHHHHHHHHHHC
Q 030489 108 FKSQNMKSAFDVYEEMCENNISPNIA-----------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~~a~~~~~~m~~~ 149 (176)
...|++++|.+.++++.......... |++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999987653221111 8888888888887653
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=3.4e-10 Score=78.48 Aligned_cols=163 Identities=11% Similarity=0.089 Sum_probs=130.0
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHH-------hCCCh-------hHHHHHHHHHHhCCCCcChhhHHHHHHHHHh
Q 030489 9 DAALKLFGQLTDRGLEPDIITYNTIICGYC-------SLNRL-------DEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 74 (176)
++|..+|++..+.. +.+...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998864 458889988888876 35886 8999999999873123356689999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC------------CCChHHHHH
Q 030489 75 EGRMDDATMMFSKMLEKGPKANVV-TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI------------AGRPTEAMQ 141 (176)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------------~~~~~~a~~ 141 (176)
.|++++|.++|++..+..+. +.. +|..+...+.+.|++++|..+|++..+.+..... .|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999986432 343 8999999999999999999999999875432111 188999999
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 142 LYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 142 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+|++..+.. .-+...+..++..+.+.|+.++|
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 999998642 22467788888999999988765
No 62
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.26 E-value=3.7e-10 Score=71.88 Aligned_cols=124 Identities=11% Similarity=0.169 Sum_probs=102.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHH-HHhcCCH--
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA-FCKEGRM-- 78 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~-- 78 (176)
+...|++++|.+.++...+.. +.+...|..+...|...|++++|+..|++..+... .+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 456789999999999988764 44789999999999999999999999999887642 366777778888 7889998
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
++|...|++..+..+. +...+..+...|...|++++|...|++......
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999988654 788899999999999999999999999987643
No 63
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=8.1e-11 Score=73.27 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=100.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+...|++++|++.+....... +-+...+..+...|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHH
Confidence 456788999999999887652 22456677899999999999999999999988753 3788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV-YEEMCE 125 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 125 (176)
...|++..+..+. +..+|..+...|.+.|+++++.+. +++..+
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999988655 788999999999999998876654 466554
No 64
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.25 E-value=7.9e-10 Score=72.23 Aligned_cols=137 Identities=16% Similarity=0.110 Sum_probs=110.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|++.. +|+..+|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|
T Consensus 16 ~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence 457899999999998774 5688999999999999999999999999988764 33678888999999999999999
Q ss_pred HHHHHHHHhcCCCC---------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKA---------------NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYD 144 (176)
Q Consensus 82 ~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~ 144 (176)
.+.|++..+..... ....+..+..+|.+.|++++|...|++........ ..+..+.++..+.
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~ 167 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-RHSKIDKAMECVW 167 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-ccchHHHHHHHHH
Confidence 99999998764321 23788899999999999999999999987653221 1255555555554
No 65
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.24 E-value=3.9e-10 Score=80.59 Aligned_cols=161 Identities=10% Similarity=0.027 Sum_probs=131.7
Q ss_pred chhhCC-hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECH-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+.+.|+ +++|+..|++..+..+ -+...|+.+..++...|++++|+..|++....... +...|..+..++.+.|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHH
Confidence 456786 9999999999998753 38899999999999999999999999999987543 78889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCCC-------------C--ChHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFK-SQNMKSA-----FDVYEEMCENNISPNIA-------------G--RPTEA 139 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~-------------~--~~~~a 139 (176)
|+..|+++++.++. +...|+.+..++.+ .|..++| +..+++..... |+.. | +.++|
T Consensus 219 Al~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 219 ELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHH
Confidence 99999999998765 89999999999999 6665777 47888776643 3332 4 68999
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHhhccc
Q 030489 140 MQLYDSMLRNGIMPDGLLLSTLADYNLQSS 169 (176)
Q Consensus 140 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 169 (176)
++.+.++ +. -..+...+..+...+.+.|
T Consensus 296 ~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 296 LNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 9999888 32 2334567778888887764
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=2e-10 Score=84.29 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=134.5
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCCh-hHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRL-DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
++++++..++...... +.+...+..+...+...|++ ++|++.|++..+... -+...|..+..+|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567777777766553 44789999999999999999 999999999887642 36788999999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCCC---------------------CC
Q 030489 86 SKMLEKGPKANVVTYSCLIDGYFKS---------QNMKSAFDVYEEMCENNISPNIA---------------------GR 135 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~---------------------~~ 135 (176)
++..+.. |+...+..+...|... |++++|+..+++..+.. |+.. |+
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9999875 5578999999999999 99999999999987753 3322 45
Q ss_pred hHHHHHHHHHHHHCCCCC----cHHHHHHHHHHhhcccCcccc
Q 030489 136 PTEAMQLYDSMLRNGIMP----DGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A 174 (176)
+++|++.|++..+. .| +...+..+..++...|++++|
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 237 SQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp HHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999875 45 677889999999999998876
No 67
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.22 E-value=1.6e-09 Score=67.47 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+...+..+...+.+.|++++|+..|++...... -+...|..+..+|...|++++|...|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 567788899999999999999999999988753 37888999999999999999999999999998765 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 030489 106 GYFKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~~ 127 (176)
+|.+.|++++|...|++.....
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987754
No 68
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=1.6e-10 Score=88.42 Aligned_cols=159 Identities=14% Similarity=0.014 Sum_probs=129.7
Q ss_pred hhCChhHHHHHHHHHh--------hCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc
Q 030489 4 KECHLDAALKLFGQLT--------DRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 75 (176)
..|++++|++.+++.. +.. +.+...+..+..++.+.|++++|++.|++..+... -+...+..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 5789999999999988 442 44678899999999999999999999999887642 3678888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQL 142 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~ 142 (176)
|++++|.+.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.+ |+.. |++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999988655 78899999999999999999 99999988753 3333 999999999
Q ss_pred HHHHHHCCCCCc-HHHHHHHHHHhhcccC
Q 030489 143 YDSMLRNGIMPD-GLLLSTLADYNLQSSG 170 (176)
Q Consensus 143 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 170 (176)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998864 566 4466667777766554
No 69
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=3e-10 Score=72.39 Aligned_cols=142 Identities=12% Similarity=0.107 Sum_probs=103.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHH-HHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDA-FCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~ 80 (176)
+.+.|++++|...|++..+.. |.+...+..+...+...|++++|+..++...... |+...+..+... +...+....
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccch
Confidence 457899999999999987764 3378889999999999999999999998876553 344333322212 222233345
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSML 147 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~ 147 (176)
|...+++..+..+. +...+..+..++...|++++|...|+++......+... |+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 78889998887654 78899999999999999999999999988765443221 55555555555443
No 70
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=1.9e-09 Score=71.41 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=106.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCC-c-cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh--hhHHHHHHHHHh---
Q 030489 2 LIKECHLDAALKLFGQLTDRGLE-P-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS--ITFTILIDAFCK--- 74 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~--- 74 (176)
+.+.|++++|...|+.+.+..+. | ....+..+..++.+.|++++|+..|++..+....... ..+..+..++.+
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD 93 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh
Confidence 46789999999999999876432 1 2467888999999999999999999998876322111 134444444443
Q ss_pred ---------------cCCHHHHHHHHHHHHhcCCCCcHHHH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 030489 75 ---------------EGRMDDATMMFSKMLEKGPKANVVTY-----------------SCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 75 ---------------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
.|+.++|...|+++++..+. +..++ ..+...|.+.|++++|+..|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 57899999999999987543 33333 2455678889999999999999
Q ss_pred HHHCCCCCCCC--------------CChHHHHHHHHHHHHC
Q 030489 123 MCENNISPNIA--------------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 123 m~~~~~~~~~~--------------~~~~~a~~~~~~m~~~ 149 (176)
+.+........ |+.++|.+.++.+...
T Consensus 173 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 173 MLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 87653222111 8999999999888765
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=5.2e-10 Score=75.70 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=101.2
Q ss_pred chhhCChhHHHHHHHHHhhC------C-CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC------C-CCcChhhHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR------G-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV------Q-LKPNSITFTI 67 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ 67 (176)
|...|++++|++.+++..+. + .+....++..+...|...|++++|++.+.+.... . .+....++..
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 132 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN 132 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 46789999999999988754 2 2335678999999999999999999999987754 1 1234667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEK------G-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+...+...|++++|...+++..+. + .+....++..+...|...|++++|...+++...
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 889999999999999999998865 1 122456788999999999999999999998865
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=8.2e-10 Score=82.69 Aligned_cols=142 Identities=6% Similarity=-0.017 Sum_probs=90.6
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMM 84 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 84 (176)
.|++++|.+.|++..+.. +.+...|..+...+.+.|++++|++.|++..+... .+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888777653 33577788888888888888888888888776532 2566777777888888888888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC--------------CChHHHHHHHHHHHHC
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------~~~~~a~~~~~~m~~~ 149 (176)
|++..+.... +...+..+..+|.+.|++++|.+.+++..+........ |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888777543 67778888888888888888888888876643211111 6777888888777754
No 73
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.19 E-value=2.1e-09 Score=67.25 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=89.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|...|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A 100 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 100 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 356788888888888887764 3367888888888888888888888888877653 33567777788888888888888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCL--IDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~ 124 (176)
...|++..+.... +...+..+ ...+.+.|++++|...+....
T Consensus 101 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 101 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888876543 55555333 334677788888888887653
No 74
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.18 E-value=1.1e-10 Score=84.08 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+..+|+.+...|...|.+++|..+|..+ ..|..+..++.+.|++++|.+.++++ .++.+|..++.
T Consensus 121 n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~ 185 (449)
T 1b89_A 121 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 185 (449)
T ss_dssp ----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHH
Confidence 3345555555555555555555555433 24555555555555555555555555 15556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CChHHHHHHHHHHH
Q 030489 106 GYFKSQNMKSAFDVYEEMCENNISPNIA----------GRPTEAMQLYDSML 147 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~~a~~~~~~m~ 147 (176)
+|...|+|+.|......+. ..|+.. |.+++|+.+++...
T Consensus 186 aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666633332211 111111 66777766666665
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=3.1e-10 Score=78.01 Aligned_cols=151 Identities=20% Similarity=0.193 Sum_probs=119.0
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-------CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK----- 91 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 91 (176)
+.+..++..+...+...|++++|+.+++++.+. ..+....++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999988763 23345667888889999999999999999988764
Q ss_pred -C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCCC-------------CChHHHHHHHHHHHHC-
Q 030489 92 -G-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN------NISPNIA-------------GRPTEAMQLYDSMLRN- 149 (176)
Q Consensus 92 -~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~-------------~~~~~a~~~~~~m~~~- 149 (176)
+ .+....++..+...|...|++++|...+++..+. +..+... |++++|++++++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2335677889999999999999999999988654 2222222 9999999999998753
Q ss_pred -----CCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 150 -----GIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 150 -----g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
+..|. ..++..+...+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 22333 44778888999999998876
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=1.5e-09 Score=74.77 Aligned_cols=147 Identities=14% Similarity=-0.006 Sum_probs=113.3
Q ss_pred chhhCChhHHHHHHHHHhhC----CCCcc-HHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCc-ChhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----GLEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~ 71 (176)
|...|++++|.+.|.+..+. |-++. ..+|+.+..+|.+.|++++|+..|++..+. |-.+ -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678999999999877653 32222 578999999999999999999999887653 1111 13578888899
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCC-c----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC-------C-----
Q 030489 72 FCKE-GRMDDATMMFSKMLEKGPKA-N----VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-------A----- 133 (176)
Q Consensus 72 ~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~----- 133 (176)
|... |++++|...|++..+..... + ..+++.+...|.+.|++++|+..|++.......... .
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 9996 99999999999887642211 1 457889999999999999999999999875543322 0
Q ss_pred ------CChHHHHHHHHHHHH
Q 030489 134 ------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 134 ------~~~~~a~~~~~~m~~ 148 (176)
|++++|...|++..+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 899999999999875
No 77
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.15 E-value=2e-09 Score=64.93 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=86.6
Q ss_pred CCcc-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 030489 23 LEPD-IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYS 101 (176)
Q Consensus 23 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (176)
+.|+ ...+......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|++.++.+.. +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 3443 4678888899999999999999999988764 337788888899999999999999999999988654 788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 102 CLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+..+|...|++++|.+.|++..+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=5.1e-09 Score=77.74 Aligned_cols=165 Identities=13% Similarity=0.251 Sum_probs=124.4
Q ss_pred hCChh-------HHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC-h-hhHHHHHHHHHhc
Q 030489 5 ECHLD-------AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN-S-ITFTILIDAFCKE 75 (176)
Q Consensus 5 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~ll~~~~~~ 75 (176)
.|+++ +|.++|++..+.-.+.+...|..++..+.+.|++++|..+|++..+. .|+ . ..|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 58876 89999999986323447899999999999999999999999999885 444 2 4788888888899
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLID-GYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQ 141 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~ 141 (176)
|++++|.++|++..+.... +...|..... .+...|++++|..+|++..+.. |+.. |+.++|..
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 9999999999999876332 3333333222 2346899999999999887643 3332 99999999
Q ss_pred HHHHHHHCC-CCCc--HHHHHHHHHHhhcccCcccc
Q 030489 142 LYDSMLRNG-IMPD--GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 142 ~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A 174 (176)
+|++....+ ..|+ ...|...+......|+.+.+
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999763 2333 33677777777777876543
No 79
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.4e-09 Score=74.69 Aligned_cols=147 Identities=13% Similarity=0.093 Sum_probs=79.5
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
+.+...+..+...+...|++++|+..|++...... -+...+..+...+.+.|++++|...+++....... ........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 33445555666666666666666666666655432 24455556666666666666666666666554321 11222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHCCCC-CcHHHHHHHHHHhhccc
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRNGIM-PDGLLLSTLADYNLQSS 169 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g 169 (176)
...+.+.++.+.|...+++.... .|+.. |++++|+..|.++.+.... .+...+..+...+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23345555566666666655543 23222 6666666666666644211 11445666666666666
Q ss_pred Ccccc
Q 030489 170 GSQEH 174 (176)
Q Consensus 170 ~~~~A 174 (176)
+.++|
T Consensus 270 ~~~~a 274 (287)
T 3qou_A 270 TGDAL 274 (287)
T ss_dssp TTCHH
T ss_pred CCCcH
Confidence 66554
No 80
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.14 E-value=1e-09 Score=68.13 Aligned_cols=111 Identities=12% Similarity=-0.015 Sum_probs=93.4
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 030489 13 KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
..|+++.+.. +.+...+..+...+.+.|++++|+..|+...... +.+...|..+..+|...|++++|...|++.....
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555542 3366778889999999999999999999988764 3377888889999999999999999999999886
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 93 PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+. +..+|..+..+|...|++++|...|++....
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 54 7888999999999999999999999988764
No 81
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.13 E-value=5.3e-09 Score=63.05 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=82.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|+..|++..+... .+...|..+..++...|++++|
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCCCHHHH
Confidence 567899999999999988764 44788899999999999999999999998887643 3677888888999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
.+.|++..+..+. +...+..+-.
T Consensus 101 ~~~~~~al~l~P~-~~~a~~~l~~ 123 (126)
T 4gco_A 101 QRAYEDALQVDPS-NEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHCcC-CHHHHHHHHH
Confidence 9999999887654 6666555543
No 82
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.13 E-value=5.8e-09 Score=61.80 Aligned_cols=99 Identities=23% Similarity=0.376 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+...|..+...+...|++++|++.++++.... +.+..++..+...+.+.|++++|...++++.+... .+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 36778888888999999999999999887754 33677788888899999999999999999887754 37788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 030489 106 GYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.|...|++++|...++++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=4.5e-08 Score=63.77 Aligned_cols=133 Identities=11% Similarity=0.025 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
..+..+...+...|++++|+..|++.. .|+...+..+..++.+.|++++|.+.|++..+.... +...|..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345677788889999999999998763 668889999999999999999999999999988644 788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--------------C--C-----------CChHHHHHHHHHHHHCCCCCcHHHHHH
Q 030489 108 FKSQNMKSAFDVYEEMCENNISPN--------------I--A-----------GRPTEAMQLYDSMLRNGIMPDGLLLST 160 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m~~~~~~~~--------------~--~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~ 160 (176)
...|++++|...|++......... . . |++++|.+.|++..+.........+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 999999999999999987543322 0 0 999999999999997643333344444
Q ss_pred HHHHh
Q 030489 161 LADYN 165 (176)
Q Consensus 161 l~~~~ 165 (176)
.+..+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 84
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.11 E-value=1.8e-10 Score=82.50 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=128.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccH----HHHHHHHHHHHhCCChhHHHHHHHHHHhC----CC-CcChhhHHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDI----ITYNTIICGYCSLNRLDEAVQLFEKLTCV----QL-KPNSITFTILIDAF 72 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~ 72 (176)
+.+.|++++|...|++..+.+.. +. .+|..+...|...|++++|+..+++..+. +. .....++..+...|
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 45789999999999999887433 33 57889999999999999999999887643 11 22456677888999
Q ss_pred HhcCCHHHHHHHHHHHHhc----C-CCCcHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC----
Q 030489 73 CKEGRMDDATMMFSKMLEK----G-PKANVVTYSCLIDGYFKSQN-----------------MKSAFDVYEEMCEN---- 126 (176)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~m~~~---- 126 (176)
...|++++|...+++..+. + .+....++..+...|...|+ +++|...+++....
T Consensus 137 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 216 (411)
T 4a1s_A 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987654 1 12245578889999999999 99999999876432
Q ss_pred CCCCCCC-------------CChHHHHHHHHHHHHCCC-CCc----HHHHHHHHHHhhcccCcccc
Q 030489 127 NISPNIA-------------GRPTEAMQLYDSMLRNGI-MPD----GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 127 ~~~~~~~-------------~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A 174 (176)
+..+... |++++|.+.+++..+... .++ ...+..+...+...|++++|
T Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 1111111 999999999988874210 111 23778888899999988776
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=9.6e-09 Score=76.91 Aligned_cols=124 Identities=9% Similarity=-0.031 Sum_probs=109.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|++.+++..+.. +.+...+..+..++.+.|++++|
T Consensus 33 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 110 (568)
T 2vsy_A 33 ELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAA 110 (568)
T ss_dssp HHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 457899999999999999875 3478899999999999999999999999988764 33678889999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKS---QNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~ 128 (176)
.+.|++..+.... +...+..+..++... |++++|.+.+++..+.+.
T Consensus 111 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 111 AAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999999988654 788999999999999 999999999999876543
No 86
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.10 E-value=5.7e-09 Score=73.33 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=103.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc--------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD--------------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 67 (176)
|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..+++..+.. +.+...+..
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 235 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSR 235 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 5678999999999999988743322 5899999999999999999999999998864 337788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA-FDVYEEMC 124 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 124 (176)
+..+|...|++++|...|++..+..+. +..++..+..++.+.|+++++ ...++.|.
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988654 788999999999999999988 55666663
No 87
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.09 E-value=6.4e-09 Score=62.12 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+...+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|.+.+++..+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 44556666666666666777766666665542 224555666666666666777776666666655432 4566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 030489 106 GYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.|...|++++|...+++....
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 666667777776666666543
No 88
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.09 E-value=3e-09 Score=68.77 Aligned_cols=145 Identities=14% Similarity=-0.002 Sum_probs=105.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCC-cChhhHHHHHHHHHhcC
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK-PNSITFTILIDAFCKEG 76 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~ 76 (176)
....|++++|.++++.+... ......++..+...+...|++++|+..+++.... +.. ....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45789999999966655442 3346788999999999999999999999887652 222 23456777888999999
Q ss_pred CHHHHHHHHHHHHhc----CCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-----------------
Q 030489 77 RMDDATMMFSKMLEK----GPK--ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------------- 133 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------------- 133 (176)
++++|...+++..+. +.. .....+..+...+...|++++|...+++...........
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999887653 212 234568888899999999999999999875421111111
Q ss_pred CChHHHHHHHHHHH
Q 030489 134 GRPTEAMQLYDSML 147 (176)
Q Consensus 134 ~~~~~a~~~~~~m~ 147 (176)
|++++|.+.+++..
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 89999999888776
No 89
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=5.3e-09 Score=76.19 Aligned_cols=168 Identities=13% Similarity=0.016 Sum_probs=111.7
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc---------
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE--------- 75 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------- 75 (176)
.+++++|.+++++..... +.+..++..+...|...|++++|+..+++..+... -+..++..+..+|...
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467788888888887664 44778888888899999999999999988876532 2445555555444321
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------
Q 030489 76 ----------GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133 (176)
Q Consensus 76 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------ 133 (176)
+..+.|...++...+.... +..++..+...|...|++++|...|++..+....+...
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 2345667777776666443 66677778888888888888888888877654433221
Q ss_pred ---CChHHHHHHHHHHHHCCC-----------------------CCcHHHHHHHHHHhhcccCccccC
Q 030489 134 ---GRPTEAMQLYDSMLRNGI-----------------------MPDGLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 134 ---~~~~~a~~~~~~m~~~g~-----------------------~p~~~~~~~l~~~~~~~g~~~~A~ 175 (176)
++.++|+..|.+..+... +.+..++..+-..+...|+.++|.
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 677778777776654311 223567888888888889888873
No 90
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.09 E-value=8.3e-09 Score=76.61 Aligned_cols=160 Identities=11% Similarity=0.102 Sum_probs=129.0
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHh-------CCChh-------HHHHHHHHHHhCCCCcChhhHHHHHHHHHh
Q 030489 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCS-------LNRLD-------EAVQLFEKLTCVQLKPNSITFTILIDAFCK 74 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 74 (176)
++|..+|++..... +.+...|......+.+ .|+++ +|..+|++..+.-.+-+...|..+...+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36777888887763 4478899988888875 79987 999999998863223468889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC--------------CChHHH
Q 030489 75 EGRMDDATMMFSKMLEKGPKAN-VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------------GRPTEA 139 (176)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------~~~~~a 139 (176)
.|++++|..+|++..+.... + ...|..++..+.+.|++++|.++|++..+.. |... |+.++|
T Consensus 334 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999986432 3 3589999999999999999999999987642 3221 889999
Q ss_pred HHHHHHHHHCCCCC-cHHHHHHHHHHhhcccCcccc
Q 030489 140 MQLYDSMLRNGIMP-DGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 140 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 174 (176)
..+|++..+. .| +...+..++..+.+.|+.+.|
T Consensus 411 ~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 411 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhH
Confidence 9999999864 34 467888999999999987765
No 91
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.08 E-value=3.5e-09 Score=75.33 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=124.9
Q ss_pred chhhCChhHHHHHHHHHhhC----CC-Cc-cHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCc-ChhhHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----GL-EP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILID 70 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~ 70 (176)
|...|+++.|...+++..+. +. .+ ...+++.+...|...|++++|++.|++.... +..+ ...++..+..
T Consensus 151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678999999999887643 11 11 3567889999999999999999999887652 2111 2356778889
Q ss_pred HHHhcCCHHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------
Q 030489 71 AFCKEGRMDDATMMFSKMLE-----KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------ 133 (176)
+|...|++++|.+.|++..+ ... ....++..+...|.+.|++++|...+++...........
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998876 433 347788999999999999999999999987643322221
Q ss_pred ----CC---hHHHHHHHHHHHHCCCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 134 ----GR---PTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ----~~---~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
++ .++|+..+++ .+..|+ ...+..+...|...|+.++|
T Consensus 310 y~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A 355 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQA 355 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHH
Confidence 55 6666666665 333333 34667788889999988776
No 92
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.08 E-value=8e-10 Score=78.69 Aligned_cols=170 Identities=10% Similarity=0.031 Sum_probs=122.6
Q ss_pred chhhCChhHHHHHHHHHhhC----C--CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCc-ChhhHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----G--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILID 70 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~ 70 (176)
|...|++++|.+.+.+..+. + .+....+++.+...|...|++++|+..+++.... +-.+ ...++..+..
T Consensus 153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45678888999888877643 1 1113467888999999999999999999887643 1111 1246788889
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------
Q 030489 71 AFCKEGRMDDATMMFSKMLEK----GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------ 133 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------ 133 (176)
+|...|++++|.+.|++..+. +. +....++..+...|.+.|++++|...+++...........
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSL 312 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988762 23 4456778999999999999999999999875431111110
Q ss_pred ----CC---hHHHHHHHHHHHHCCCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 134 ----GR---PTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ----~~---~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
|+ .++|+.++++. +..|+ ...+..+...|...|+.++|
T Consensus 313 ~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A 358 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKA 358 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 55 66666666665 33333 34667788899999988776
No 93
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.07 E-value=9e-09 Score=61.82 Aligned_cols=101 Identities=9% Similarity=0.048 Sum_probs=82.6
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
+.+...|..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|.+.+++..+.... +..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 4467888888888889999999999998887653 236777888888888899999999999888877543 77888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
..+|.+.|++++|...|++....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 88899999999999999887654
No 94
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=1.5e-08 Score=60.00 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=83.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|+.+++++.... +.+..++..+...+...|++++|
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEA 96 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHH
Confidence 456789999999999888764 3467888888899999999999999998887754 33677788888889999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
...|+++.+..+. +...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 97 IEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 9999988877543 566666666655543
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=5.5e-09 Score=64.87 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=90.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.... +..++..+...|.+.|+.++|
T Consensus 41 y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Confidence 567899999999999999875 348899999999999999999999999999886432 678899999999999998776
Q ss_pred HHH-HHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 030489 82 TMM-FSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
.+. +++..+..+. +..+|......+.+.|+
T Consensus 119 a~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 119 AKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 554 6888887654 77888887777777664
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=1.8e-08 Score=68.04 Aligned_cols=142 Identities=10% Similarity=0.078 Sum_probs=112.2
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN---SITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVV 98 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 98 (176)
+.+...+..+...+.+.|++++|+..|++..+.... + ...+..+..+|.+.|++++|...|++..+..+. ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 446788888899999999999999999999876422 3 567888889999999999999999999987432 2356
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCC-------------------C---------CChHHHHHH
Q 030489 99 TYSCLIDGYFK--------SQNMKSAFDVYEEMCENNISPNI-------------------A---------GRPTEAMQL 142 (176)
Q Consensus 99 ~~~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~-------------------~---------~~~~~a~~~ 142 (176)
++..+..++.. .|++++|...|++.......... . |++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67788888888 99999999999998875432211 1 999999999
Q ss_pred HHHHHHCCCCCc----HHHHHHHHHHhhcc
Q 030489 143 YDSMLRNGIMPD----GLLLSTLADYNLQS 168 (176)
Q Consensus 143 ~~~m~~~g~~p~----~~~~~~l~~~~~~~ 168 (176)
|+++.+. .|+ ...+..+..++...
T Consensus 171 ~~~~l~~--~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 171 YEAVFDA--YPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHH--CTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCCchHHHHHHHHHHHHHHh
Confidence 9999865 343 34666777777766
No 97
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=1.7e-08 Score=69.36 Aligned_cols=146 Identities=11% Similarity=0.085 Sum_probs=104.9
Q ss_pred chhhCChhHHHHHHHHHhhCCC-CccH----HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-cC----hhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGL-EPDI----ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-PN----SITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~ 71 (176)
+.+.|++++|.++++...+... .|+. ..+..+...+...+++++|+..|++....... ++ ..+++.+...
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3567999999999999887532 2332 23345777777888999999999998874322 22 2368888999
Q ss_pred HHhcCCHHHHHHHHHHHHh----c-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCCC--------
Q 030489 72 FCKEGRMDDATMMFSKMLE----K-GPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NISPNIA-------- 133 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~-------- 133 (176)
|...|++++|...|++..+ . +..+ ...+|..+...|.+.|++++|...+++..+. +..+...
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 9999999999999998873 1 1122 2347888999999999999999999987542 2112111
Q ss_pred -----C-ChHHHHHHHHHHH
Q 030489 134 -----G-RPTEAMQLYDSML 147 (176)
Q Consensus 134 -----~-~~~~a~~~~~~m~ 147 (176)
| .+++|.+.+++..
T Consensus 245 ~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHH
Confidence 6 4588888777765
No 98
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.8e-08 Score=60.40 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+..+. +..+|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45667788888889999999999998887764 336778888888999999999999999998887654 7888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 030489 106 GYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~ 125 (176)
+|...|++++|...|++...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 99999999999999887765
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1.9e-08 Score=66.56 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH--HHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-P-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV--VTYS 101 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 101 (176)
+...+..+...+.+.|++++|+..|+++...... | ....+..+..++.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677778899999999999999999875322 1 2356778889999999999999999999987544221 2454
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCCC----------------------------CC
Q 030489 102 CLIDGYFK------------------SQNMKSAFDVYEEMCENNISPNIA----------------------------GR 135 (176)
Q Consensus 102 ~l~~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~----------------------------~~ 135 (176)
.+..++.+ .|++++|...|+++.+........ |+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 55555543 578999999999998754332211 89
Q ss_pred hHHHHHHHHHHHHCCCCCcH----HHHHHHHHHhhcccCcccc
Q 030489 136 PTEAMQLYDSMLRNGIMPDG----LLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A 174 (176)
+++|+..|+++.+. .|+. ..+..+..++.+.|+.++|
T Consensus 163 ~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 163 WVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999865 3442 4678888999999998876
No 100
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.03 E-value=1.3e-08 Score=74.87 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=96.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+... .+..++..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999998874 44789999999999999999999999999988743 3678889999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDG--YFKSQNMKSAFDVYE 121 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 121 (176)
.+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999987543 55566666666 888999999999998
No 101
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=2.8e-08 Score=59.58 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=87.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 103 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKA 103 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHH
Confidence 457899999999999988764 3478889999999999999999999999888764 23677888888999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
.+.|++..+.... +...+..+..++.+.|+
T Consensus 104 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 104 MDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 9999998877543 56677777777766553
No 102
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.02 E-value=2e-08 Score=62.70 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
....|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...+++..+.... +..+|..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 35667888889999999999999999988764 336788888999999999999999999999988643 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHH
Q 030489 106 GYFKSQNMKSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSML 147 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~ 147 (176)
++...|++++|...+++........... |++++|++.+.+..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999987653221111 66666666665543
No 103
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.02 E-value=3.4e-08 Score=59.80 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=89.1
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
+.+...|..+...+...|++++|+..|........ .+...+..+..++...|++++|...+++..+.... +...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 44788999999999999999999999999887643 36788889999999999999999999999988654 78899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
..+|...|++++|...|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 104
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.02 E-value=3e-08 Score=62.20 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=87.1
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
+.+...|..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|...|++..+.... +...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 34667888899999999999999999999887642 36778888889999999999999999999988654 78889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 030489 104 IDGYFKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~~~m~~~~ 127 (176)
..+|...|++++|...|++.....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999887643
No 105
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.02 E-value=1.4e-08 Score=62.37 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+...+..+...+.+.|++++|+..|+....... .+...|..+..++.+.|++++|...|+.....++. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 556777888889999999999999999887643 37788888999999999999999999999988654 7788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 030489 106 GYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+|...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988654
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=4.3e-08 Score=64.31 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=95.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC----ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh---
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN----RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK--- 74 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--- 74 (176)
|...+++++|.+.|++..+.| +...+..|-..|.. + ++++|+++|++..+.| +...+..|-..|..
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQA 100 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGG
T ss_pred HhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 345677888888888777765 55666677777766 5 7788888887776654 45566666666665
Q ss_pred -cCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCCC-----------C---
Q 030489 75 -EGRMDDATMMFSKMLEKGPK-ANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNISPNIA-----------G--- 134 (176)
Q Consensus 75 -~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~-----------~--- 134 (176)
.+++++|.++|++..+.+.. .+...+..|-..|.. .+++++|...|++..+.+..+... |
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~ 180 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFI 180 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTB
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCC
Confidence 67788888888877776532 126677777777777 677888888888776651111111 2
Q ss_pred --ChHHHHHHHHHHHHCCC
Q 030489 135 --RPTEAMQLYDSMLRNGI 151 (176)
Q Consensus 135 --~~~~a~~~~~~m~~~g~ 151 (176)
+.++|+.+|++..+.|.
T Consensus 181 ~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 181 EPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 66777777777766553
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=6.6e-09 Score=71.38 Aligned_cols=123 Identities=10% Similarity=0.088 Sum_probs=102.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHH-HHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILI-DAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~~ 80 (176)
+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|+..+++.... .|+........ ..+...++.+.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCc
Confidence 457899999999999998874 347889999999999999999999999988765 45544333333 34677888889
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
|...+++.....+. +...+..+...|...|++++|...++++.....
T Consensus 204 a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 204 EIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 99999999988654 889999999999999999999999999987643
No 108
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.01 E-value=1.4e-08 Score=59.00 Aligned_cols=102 Identities=13% Similarity=0.020 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCL 103 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 103 (176)
+...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 56677888889999999999999999988764 3367788888899999999999999999998764 33 57889999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 030489 104 IDGYFKS-QNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 104 ~~~~~~~-g~~~~a~~~~~~m~~~~~~ 129 (176)
..+|.+. |++++|.+.+++.......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 9999999999998775443
No 109
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=6.1e-09 Score=71.68 Aligned_cols=125 Identities=10% Similarity=-0.053 Sum_probs=97.1
Q ss_pred chhhCChhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhC-CChhHHHHHHHHHHhCCC----CcC-hhhHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----GLEP-DIITYNTIICGYCSL-NRLDEAVQLFEKLTCVQL----KPN-SITFTILID 70 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~----~~~-~~~~~~ll~ 70 (176)
|.+.|++++|+..|++..+. |-.+ -..+++.+..+|... |++++|+..|++..+... .+. ..++..+..
T Consensus 87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 45679999999999888653 2111 146888999999996 999999999998775311 111 356788899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 71 AFCKEGRMDDATMMFSKMLEKGPKANV------VTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+.+.|++++|...|++..+....... ..|..+..++...|++++|...|++....
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999986544322 15778888999999999999999987653
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.00 E-value=6.9e-09 Score=64.61 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=80.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|++..+.. |.+...|..+..+|...|++++|+..|++..+.... +...|..+..+|.+.|++++|
T Consensus 46 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 46 FYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHH
Confidence 567899999999999999875 448999999999999999999999999999887533 678889999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030489 82 TMMFSKMLEKGP 93 (176)
Q Consensus 82 ~~~~~~~~~~~~ 93 (176)
...|++..+...
T Consensus 124 ~~~~~~al~l~~ 135 (151)
T 3gyz_A 124 KECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC
Confidence 999999998753
No 111
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.00 E-value=9.3e-10 Score=76.07 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=126.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCC-cChhhHHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK-PNSITFTILIDAF 72 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~ 72 (176)
+.+.|++++|..+|++..+.... + ...+..+...+...|++++|++.+++.... +.. ....++..+...+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 45789999999999999876432 3 467889999999999999999999876542 212 2356677888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-Cc----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHC-
Q 030489 73 CKEGRMDDATMMFSKMLEKGPK-AN----VVTYSCLIDGYFKSQN--------------------MKSAFDVYEEMCEN- 126 (176)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~m~~~- 126 (176)
...|++++|...+++..+.... ++ ..++..+...|...|+ +++|...+++....
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987643111 11 3478888999999999 99999999876432
Q ss_pred ---CCCCCCC-------------CChHHHHHHHHHHHHC----CCC-CcHHHHHHHHHHhhcccCcccc
Q 030489 127 ---NISPNIA-------------GRPTEAMQLYDSMLRN----GIM-PDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 127 ---~~~~~~~-------------~~~~~a~~~~~~m~~~----g~~-p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+..+... |++++|.+.+++..+. +.. ....++..+...+...|+.++|
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1111111 9999999999888632 111 1123677888888888887765
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.99 E-value=7.1e-08 Score=57.46 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=89.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+...|++++|.+.|++..+.. +.+...+..+...+...|++++|+..++...... +.+...+..+...+...|++++|
T Consensus 22 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A 99 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEA 99 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHH
Confidence 456789999999999988764 3478888899999999999999999999888763 33577788888899999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
...|++..+.... +...+..+..++.+.|++
T Consensus 100 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 100 VAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 9999998887543 777888888888877764
No 113
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.98 E-value=6.1e-08 Score=56.71 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
....+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 45677788888889999999999998887653 236777888888888999999999999988877543 6788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 030489 106 GYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+|...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999887654
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=5.5e-09 Score=68.35 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI----------------LIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
...+......+...|++++|+..|++..+.... +...+.. +..+|.+.|++++|...|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444555666788999999999999998876321 4556666 88899999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 030489 91 KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 127 (176)
..+. +...|..+..+|...|++++|...|++..+.+
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8755 88999999999999999999999999998753
No 115
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.98 E-value=8.8e-09 Score=73.32 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=122.9
Q ss_pred chhhCChhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC--C----CcChhhHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----GLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ--L----KPNSITFTILID 70 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~~~ll~ 70 (176)
+...|++++|.+.|++..+. +.++ ...++..+...|...|++++|+..+.+..... . .....+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 35679999999999998764 2122 45788999999999999999999998876531 1 112356778889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCCC--------
Q 030489 71 AFCKEGRMDDATMMFSKMLEKGP-----KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN----NISPNIA-------- 133 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~-------- 133 (176)
+|...|++++|.+.|++..+... .....++..+...|...|++++|...+++..+. +..|...
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 99999999999999998875311 112247888999999999999999999988652 2212222
Q ss_pred -----CChHHHHHHHHHHHHC----CCCCcHHHHHHHHHHhhcccC
Q 030489 134 -----GRPTEAMQLYDSMLRN----GIMPDGLLLSTLADYNLQSSG 170 (176)
Q Consensus 134 -----~~~~~a~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~ 170 (176)
|++++|...+++..+. +-......+..+...+...|+
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999888742 111112235566677776665
No 116
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.98 E-value=5.9e-10 Score=79.79 Aligned_cols=173 Identities=13% Similarity=0.069 Sum_probs=117.0
Q ss_pred chhhCChhHHHHHHHHHhhC----C-CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----C-CCcChhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----G-LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----Q-LKPNSITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~ 71 (176)
|...|++++|.+.|++..+. + .+....++..+...|...|++++|+..+++.... + ......++..+...
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 96 YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 45678889999988877643 1 1224577888888888999999999888876543 1 11234567777788
Q ss_pred HHhcCC-----------------HHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 030489 72 FCKEGR-----------------MDDATMMFSKMLEK----GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 72 ~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 129 (176)
|...|+ +++|.+.+++..+. +. .....++..+...|...|++++|...+++.......
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 888888 88888888776532 11 113346777888888889998888888877543211
Q ss_pred CCC------C-----------CChHHHHHHHHHHHHCC----CC-CcHHHHHHHHHHhhcccCcccc
Q 030489 130 PNI------A-----------GRPTEAMQLYDSMLRNG----IM-PDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 130 ~~~------~-----------~~~~~a~~~~~~m~~~g----~~-p~~~~~~~l~~~~~~~g~~~~A 174 (176)
... . |++++|.+.+++..+.. .. ....++..+...+...|+.++|
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 111 0 88888888888776321 10 1145667777888888887765
No 117
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.95 E-value=2.7e-08 Score=64.39 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=92.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc---------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD---------------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 66 (176)
+.+.|++++|.+.|++..+...... ..+|..+..+|.+.|++++|+..++...+.. +.+...+.
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 126 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALY 126 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 4578999999999999987532211 2788899999999999999999999988764 33677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF-DVYEEMCE 125 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 125 (176)
.+..+|...|++++|.+.|++..+.... +..++..+..++...++..++. ..+..|..
T Consensus 127 ~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 127 KLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999887644 7788888888888887777766 55555543
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=4.5e-08 Score=58.56 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=78.6
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+... .+...+..+..++...|++++|
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A 91 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASA 91 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhCHHHH
Confidence 467899999999999998875 44789999999999999999999999999888643 3677888999999999999999
Q ss_pred HHHHHHHHhcC
Q 030489 82 TMMFSKMLEKG 92 (176)
Q Consensus 82 ~~~~~~~~~~~ 92 (176)
...|++..+..
T Consensus 92 ~~~~~~al~~~ 102 (126)
T 3upv_A 92 LETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 119
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=76.90 Aligned_cols=172 Identities=17% Similarity=0.142 Sum_probs=125.3
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCc-ChhhHHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILIDAF 72 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~ 72 (176)
+.+.|++++|...|++..+.+.. + ..+|..+...+...|++++|+..+++.... +..| ...++..+...+
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45789999999999999876432 3 367889999999999999999999876532 2222 245677788899
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHC-
Q 030489 73 CKEGRMDDATMMFSKMLEKGP-----KANVVTYSCLIDGYFKSQN--------------------MKSAFDVYEEMCEN- 126 (176)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~m~~~- 126 (176)
...|++++|...+++..+... .....++..+...|...|+ +++|...+++....
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988765311 1124478888899999999 99999999876432
Q ss_pred ---CCCCCCC-------------CChHHHHHHHHHHHHCC-CCCc----HHHHHHHHHHhhcccCcccc
Q 030489 127 ---NISPNIA-------------GRPTEAMQLYDSMLRNG-IMPD----GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 127 ---~~~~~~~-------------~~~~~a~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A 174 (176)
+..+... |++++|.+.+++..+.. -.++ ..++..+...+...|+.++|
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 1111111 99999999998886321 0112 23677888888888887765
No 120
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=6.3e-09 Score=79.64 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=106.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|++.|++..+.... +...+..+..++.+.|++++
T Consensus 443 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 443 LLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-
T ss_pred HHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-
Confidence 567899999999999998875 347899999999999999999999999998876432 67788889999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+.|++..+.+.. +...|..+..+|.+.|++++|.+.|++..+.
T Consensus 520 ~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 520 HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 9999999988755 8889999999999999999999999987553
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=3.1e-07 Score=63.05 Aligned_cols=146 Identities=10% Similarity=0.027 Sum_probs=102.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc-----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC---CcC--hhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD-----IITYNTIICGYCSLNRLDEAVQLFEKLTCVQL---KPN--SITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~ 71 (176)
+...|++++|.+.+....+.....+ ...+..+...+...|++++|+..+++...... .+. ..+++.+...
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4567899999999988876532211 12344566677888999999999998875321 111 4478888899
Q ss_pred HHhcCCHHHHHHHHHHHH---hcCC-CC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC----C--------
Q 030489 72 FCKEGRMDDATMMFSKML---EKGP-KA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI----A-------- 133 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~---~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~-------- 133 (176)
|...|++++|...|++.. +... .+ ...+++.+...|.+.|++++|+..+++........+. .
T Consensus 165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 2qfc_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999877 2211 11 2258889999999999999999999987543211111 1
Q ss_pred -----CChHHH-HHHHHHHH
Q 030489 134 -----GRPTEA-MQLYDSML 147 (176)
Q Consensus 134 -----~~~~~a-~~~~~~m~ 147 (176)
|+.++| ...+++..
T Consensus 245 ~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 245 CLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHH
Confidence 778888 66666554
No 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=9.9e-08 Score=55.79 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=83.8
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|+...... +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 91 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEA 91 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHH
Confidence 457899999999999998764 4478899999999999999999999999988764 23677888899999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
.+.+++..+.++. +...+..+..
T Consensus 92 ~~~~~~~~~~~~~-~~~~~~~l~~ 114 (118)
T 1elw_A 92 KRTYEEGLKHEAN-NPQLKEGLQN 114 (118)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHH
Confidence 9999999887543 5555555443
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.91 E-value=3.2e-08 Score=60.71 Aligned_cols=89 Identities=16% Similarity=0.069 Sum_probs=78.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|+...... +.+...|..+..++...|++++|+..|+....... .+...+..+..++...|++++|
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGDLDGA 105 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHH
Confidence 467899999999999998875 44889999999999999999999999999988653 3677788899999999999999
Q ss_pred HHHHHHHHhcC
Q 030489 82 TMMFSKMLEKG 92 (176)
Q Consensus 82 ~~~~~~~~~~~ 92 (176)
.+.|+...+..
T Consensus 106 ~~~~~~al~~~ 116 (142)
T 2xcb_A 106 ESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 124
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.7e-07 Score=57.18 Aligned_cols=100 Identities=11% Similarity=-0.005 Sum_probs=87.2
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHH
Q 030489 24 EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN----SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVT 99 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (176)
+.+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++..+.... +...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 346788999999999999999999999998876 455 677888889999999999999999999887544 7888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 100 YSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
|..+..+|...|++++|...|++....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999988764
No 125
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.90 E-value=1.7e-09 Score=76.97 Aligned_cols=173 Identities=14% Similarity=0.069 Sum_probs=100.8
Q ss_pred chhhCChhHHHHHHHHHhhCC----C-CccHHHHHHHHHHHHhCCC--------------------hhHHHHHHHHHHhC
Q 030489 2 LIKECHLDAALKLFGQLTDRG----L-EPDIITYNTIICGYCSLNR--------------------LDEAVQLFEKLTCV 56 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~~~ 56 (176)
|...|++++|...+++..+.. . .....++..+...+...|+ +++|+..+.+....
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345677777777777665431 0 0113466677777777777 77777777654431
Q ss_pred ----CCCc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 57 ----QLKP-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK-A----NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 57 ----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+..| ...++..+...+...|++++|...+++..+.... + ...++..+...|...|++++|...+++....
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 2335566667777777777777777766532110 1 1236667777777778888777777766432
Q ss_pred CCCCCCC-----------------CChHHHHHHHHHHHHC----CCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 127 NISPNIA-----------------GRPTEAMQLYDSMLRN----GIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 127 ~~~~~~~-----------------~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
....... |++++|.+.+++..+. +-.+. ..++..+...+...|+.++|
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1111111 7777787777776532 11111 34566677777777776655
No 126
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=6.8e-08 Score=66.71 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=112.3
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 11 ALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 11 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
|+..|+++.+.+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677776654 45666667888999999999999999998866553 2366777888899999999999999999998
Q ss_pred hcCCCC-----cHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCC--CC----------CChHHHHHHHHHHHH
Q 030489 90 EKGPKA-----NVVTYSCLIDGY--FKSQ--NMKSAFDVYEEMCENNISPN--IA----------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 90 ~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~m~~~~~~~~--~~----------~~~~~a~~~~~~m~~ 148 (176)
+.. | +..+...|..++ ...| ++++|..+|+++.+.. |+ .. |++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 4 356666666663 3334 8999999999987643 32 11 999999999997764
Q ss_pred C-----CC---CC-cHHHHHHHHHHhhcccC
Q 030489 149 N-----GI---MP-DGLLLSTLADYNLQSSG 170 (176)
Q Consensus 149 ~-----g~---~p-~~~~~~~l~~~~~~~g~ 170 (176)
. +. .| +..+...++......|+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 2 11 24 44555455555555564
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=8.3e-08 Score=62.95 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=116.7
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC----CHHHHHHHH
Q 030489 10 AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG----RMDDATMMF 85 (176)
Q Consensus 10 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~ 85 (176)
+|++.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..|-..|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 5778888888875 78889999999999999999999999998875 56777778888877 6 899999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC---CCCC--------------CChHHHHHHHH
Q 030489 86 SKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNIS---PNIA--------------GRPTEAMQLYD 144 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~---~~~~--------------~~~~~a~~~~~ 144 (176)
++..+.| +...+..|-..|.. .+++++|+.+|++..+.+.. +... ++.++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998775 67788888888877 88999999999998876652 2221 68999999999
Q ss_pred HHHHCCCCCcHHHHHHHHHHhhc
Q 030489 145 SMLRNGIMPDGLLLSTLADYNLQ 167 (176)
Q Consensus 145 ~m~~~g~~p~~~~~~~l~~~~~~ 167 (176)
+..+.+ .+...+..|-..|..
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHH
T ss_pred HHHHcC--CCHHHHHHHHHHHHc
Confidence 998762 233455555555543
No 128
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.90 E-value=3.6e-07 Score=67.21 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=62.1
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh----cC
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EG 76 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 76 (176)
.+++++|.+.|++..+.| +...+..|...|.. .+++++|++.|++....| +...+..|-..|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 455666666666665543 34455555555555 566666666666655543 33444445555555 55
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 030489 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 126 (176)
++++|.+.|++..+.+ +...+..|...|.. .+++++|++.|++..+.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5666666666555543 34445555555554 45555555555555443
No 129
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.90 E-value=7.4e-08 Score=70.12 Aligned_cols=171 Identities=17% Similarity=0.104 Sum_probs=114.1
Q ss_pred chhhCChhHHHHHHHHHhhC--------CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-----C-CC-cChhhHH
Q 030489 2 LIKECHLDAALKLFGQLTDR--------GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-----Q-LK-PNSITFT 66 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~-~~~~~~~ 66 (176)
+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|+..+++..+. + .. ....++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34679999999999876542 12335688999999999999999999999877542 1 11 1345565
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCCC--------
Q 030489 67 ILIDAFCKE--GRMDDATMMFSKMLEKGPKANVVTYSCLIDG---YFKSQNMKSAFDVYEEMCENNISPNIA-------- 133 (176)
Q Consensus 67 ~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~-------- 133 (176)
.+..++.+. +++++|.+.|++..+..+. +...+..+..+ +...++.++|++.+++..+.+......
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 555555544 5689999999999887654 56666555544 344577788888888776543221111
Q ss_pred -------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 134 -------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 -------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
++.++|.+++++..... ..+...+..+...+...|+.++|
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHH
Confidence 66778888887776542 23455667777777777776654
No 130
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.90 E-value=3e-09 Score=73.51 Aligned_cols=173 Identities=13% Similarity=0.050 Sum_probs=116.8
Q ss_pred chhhCChhHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CcC----hhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----GLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPN----SITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~ 71 (176)
+...|++++|.+.+++..+. +.+ ....++..+...+...|++++|+..+++..+... .++ ..++..+...
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 53 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 132 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 45678899999998876543 212 2356788888889999999999999887654311 111 3367777788
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 72 FCKEGR--------------------MDDATMMFSKMLEK----GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 72 ~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+...|+ +++|.+.+++.... +. .....++..+...|...|++++|...+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888 88888888776532 11 112446777888888899999999888877542
Q ss_pred CCCCCC-C----------------CChHHHHHHHHHHHHC----CCCCc-HHHHHHHHHHhhcccCcccc
Q 030489 127 NISPNI-A----------------GRPTEAMQLYDSMLRN----GIMPD-GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 127 ~~~~~~-~----------------~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A 174 (176)
...... . |++++|...+++..+. +..+. ..++..+...+...|+.++|
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 111111 0 8888888888877632 11111 44667777888888887765
No 131
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.90 E-value=5.4e-08 Score=58.12 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
..+..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|+..|++..+..+. +...+..+..+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3456677888999999999999999887642 37788888899999999999999999999988755 788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 030489 108 FKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m~~~ 126 (176)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.88 E-value=5.4e-08 Score=58.61 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc----HHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--AN----VVTY 100 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 100 (176)
...+..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|++.+++.++.... ++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45677788888899999999999988877642 35677888888889999999999888887754321 11 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 101 SCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 101 ~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677778888888888888877654
No 133
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.88 E-value=4e-07 Score=66.95 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=73.0
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh----cC
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EG 76 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 76 (176)
.+++++|.+.|++..+.| +...+..|...|.. .+++++|+..|++....| +...+..|...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 566777777777776654 45556666666666 667777777777766654 44555556666655 56
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 030489 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 127 (176)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 6777777777666653 45566666666665 566677776666655543
No 134
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.88 E-value=7.5e-08 Score=68.46 Aligned_cols=168 Identities=9% Similarity=0.035 Sum_probs=120.8
Q ss_pred chhhCChhHHHHHHHHHhhCC--CC---ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----C-CCc-ChhhHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRG--LE---PDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----Q-LKP-NSITFTILID 70 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~-~~~~~~~ll~ 70 (176)
+...|++++|.+.|++..+.. .+ ....++..+...|...|++++|+..+.+.... + ..+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 356899999999999987541 11 13567889999999999999999999887642 1 111 2456778889
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCCC-------
Q 030489 71 AFCKEGRMDDATMMFSKMLEK----GPK-ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE-----NNISPNIA------- 133 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~------- 133 (176)
+|...|++++|.+.|++..+. +.+ ....+++.+..+|...|++++|...+++... ..... ..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHH
Confidence 999999999999999987753 111 1245788899999999999999999998865 22111 11
Q ss_pred -----CChHHHHHHHHHHHHCCC---CCc-HHHHHHHHHHhhcccC
Q 030489 134 -----GRPTEAMQLYDSMLRNGI---MPD-GLLLSTLADYNLQSSG 170 (176)
Q Consensus 134 -----~~~~~a~~~~~~m~~~g~---~p~-~~~~~~l~~~~~~~g~ 170 (176)
|++++|...+++..+..- .|. ...+..+...+...++
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999999885321 122 3344555555555554
No 135
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.87 E-value=1.2e-07 Score=67.01 Aligned_cols=172 Identities=9% Similarity=-0.062 Sum_probs=118.1
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccH----HHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CcC----hhhHHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDI----ITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPN----SITFTILIDAFC 73 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~ 73 (176)
...|++++|...+++........+. .+++.+...+...|++++|...+++...... .++ ..++..+...+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4679999999999998776432232 2566777888999999999999988764311 111 233566778889
Q ss_pred hcCCHHHHHHHHHHHHhc----CCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC--C-----------
Q 030489 74 KEGRMDDATMMFSKMLEK----GPK--A-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI--A----------- 133 (176)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~----------- 133 (176)
..|++++|...+++..+. +.. | ...++..+...+...|++++|...+++.......... .
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 999999999999987643 221 2 3456677888999999999999999988654332211 1
Q ss_pred ---CChHHHHHHHHHHHHCCCCCc--HHHHH----HHHHHhhcccCcccc
Q 030489 134 ---GRPTEAMQLYDSMLRNGIMPD--GLLLS----TLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ---~~~~~a~~~~~~m~~~g~~p~--~~~~~----~l~~~~~~~g~~~~A 174 (176)
|++++|...+++.....-.++ ..... .....+...|+.++|
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999999998874311111 11111 233446677877654
No 136
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.87 E-value=6.9e-08 Score=68.32 Aligned_cols=173 Identities=13% Similarity=0.037 Sum_probs=106.9
Q ss_pred chhhCChhHHHHHHHHHhhCCC---Cc--cHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCC--c-ChhhHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGL---EP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLK--P-NSITFTILI 69 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll 69 (176)
+...|++++|.+.+++...... .+ ...++..+...+...|++++|+..+++.... +.. | ....+..+.
T Consensus 63 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 3456888888888877654210 11 1233566777788888888888888776542 221 2 233455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC-C-----------
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKGPK----ANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-A----------- 133 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~----------- 133 (176)
..+...|++++|...+++....... ....++..+...+...|++++|...+++.......+.. .
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 222 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 7778888888888888877654321 12345667777788888888888888876543111111 0
Q ss_pred ------CChHHHHHHHHHHHHCCCCCc---HHHHHHHHHHhhcccCcccc
Q 030489 134 ------GRPTEAMQLYDSMLRNGIMPD---GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ------~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A 174 (176)
|+.++|...+++.......++ ...+..+...+...|+.++|
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 272 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA 272 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 778888888777764322111 22445666777777776654
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=1.1e-07 Score=58.83 Aligned_cols=89 Identities=10% Similarity=0.024 Sum_probs=78.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|++...... .+...+..+..+|...|++++|
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELAEA 108 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 467899999999999998875 44889999999999999999999999999887642 3677888899999999999999
Q ss_pred HHHHHHHHhcC
Q 030489 82 TMMFSKMLEKG 92 (176)
Q Consensus 82 ~~~~~~~~~~~ 92 (176)
...|+...+..
T Consensus 109 ~~~~~~al~~~ 119 (148)
T 2vgx_A 109 ESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 99999988764
No 138
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=6.2e-08 Score=61.57 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=92.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHH-HHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICG-YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
+.+.|++++|+..|+...+..+ +...+..+... +...+...+++..+++..+... -+...+..+..++...|++++
T Consensus 50 ~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 50 LLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEE 126 (176)
T ss_dssp HHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHH
Confidence 5678999999999999877643 44443332222 2233344567888988877532 267888899999999999999
Q ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 81 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
|...|++..+..+.+ +...+..+...+...|+.++|...|++...
T Consensus 127 A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 127 ALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999876543 356899999999999999999999987653
No 139
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.85 E-value=2e-08 Score=59.55 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=68.4
Q ss_pred hhCChhHHHHHHHHHhhCC--CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 4 KECHLDAALKLFGQLTDRG--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
..|++++|+..|++..+.+ -+.+...+..+..+|...|++++|+..|++..+.... +..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999988764 2335678888999999999999999999988876433 577788888899999999999
Q ss_pred HHHHHHHHhcC
Q 030489 82 TMMFSKMLEKG 92 (176)
Q Consensus 82 ~~~~~~~~~~~ 92 (176)
...|++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887654
No 140
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.84 E-value=6.4e-08 Score=57.72 Aligned_cols=100 Identities=16% Similarity=0.288 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc----HHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--AN----VVT 99 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 99 (176)
....|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+.... ++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34667778888888888999988888877654 336677778888888888999888888888765321 12 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 100 YSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 100 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
|..+..+|...|++++|...|++....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888888888888888888887664
No 141
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.2e-07 Score=56.72 Aligned_cols=101 Identities=20% Similarity=0.125 Sum_probs=83.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD----IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 77 (176)
+.+.|++++|.+.|++..+.. |+ ...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 38 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 114 (148)
T 2dba_A 38 LFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGR 114 (148)
T ss_dssp HHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCC
Confidence 457899999999999998874 44 7888899999999999999999999988763 2367788888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (176)
+++|...|++..+.... +...+..+...
T Consensus 115 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 115 LDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 99999999999987543 55555554443
No 142
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.9e-07 Score=64.56 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=110.0
Q ss_pred chhhCChhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-----ChhhHHHHHHHH--H
Q 030489 2 LIKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP-----NSITFTILIDAF--C 73 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~--~ 73 (176)
+...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...|..++ .
T Consensus 110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKF 187 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHH
Confidence 4568999999999999877764 237788889999999999999999999999875 55 356666676663 3
Q ss_pred hcC--CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----C---CCCCC----------
Q 030489 74 KEG--RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-----I---SPNIA---------- 133 (176)
Q Consensus 74 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~---~~~~~---------- 133 (176)
..| +...|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+.- . .|+..
T Consensus 188 ~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~ 265 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLA 265 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHH
Confidence 334 8999999999997653 443344455558999999999999999765421 1 13322
Q ss_pred ---CChHHHHHHHHHHHHCCCCCcHH
Q 030489 134 ---GRPTEAMQLYDSMLRNGIMPDGL 156 (176)
Q Consensus 134 ---~~~~~a~~~~~~m~~~g~~p~~~ 156 (176)
|+ +|.++++++.+. .|+..
T Consensus 266 ~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 266 LMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhCh--HHHHHHHHHHHh--CCCCh
Confidence 55 778888888865 45543
No 143
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=3.6e-08 Score=68.27 Aligned_cols=144 Identities=10% Similarity=-0.020 Sum_probs=91.0
Q ss_pred hhhCChhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCc-ChhhHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDR----GLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILIDAF 72 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~ 72 (176)
...|++++|.+.|.+..+. +-++ -..+|+.+...|.+.|++++|+..|++.... |-.. -..++..+...|
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4457777777777766543 1111 1356777777788888888888888765432 2111 134566667777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---C--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----CC----------
Q 030489 73 CKEGRMDDATMMFSKMLEKGPK---A--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN----IA---------- 133 (176)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~---------- 133 (176)
.. |++++|+..|++..+.... + ...+++.+...|.+.|++++|+..|++......... ..
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 77 8888888888776643211 0 145677777888888888888888887654211111 00
Q ss_pred ---CChHHHHHHHHHHH
Q 030489 134 ---GRPTEAMQLYDSML 147 (176)
Q Consensus 134 ---~~~~~a~~~~~~m~ 147 (176)
|++++|...|++..
T Consensus 206 ~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 78888888888887
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=1.1e-07 Score=65.26 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=94.5
Q ss_pred hhhCChhHHHHHHHHHhhCCCC-cc----HHHHHHHHHHHHhCCChhHHHHHHHHHHh----C-CCCc-ChhhHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLE-PD----IITYNTIICGYCSLNRLDEAVQLFEKLTC----V-QLKP-NSITFTILIDA 71 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~-~~~~-~~~~~~~ll~~ 71 (176)
...|++++|++.|++..+.... ++ ..+++.+...|...|++++|+..|++..+ . +..+ ...++..+...
T Consensus 126 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 3u3w_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 4567999999999999874222 22 34799999999999999999999998874 1 2222 23477888999
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 030489 72 FCKEGRMDDATMMFSKMLEK----GPKA-NVVTYSCLIDGYFKSQN-MKSAFDVYEEMC 124 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 124 (176)
|.+.|++++|...+++..+. +..+ -..+|..+..+|.+.|+ +++|...+++..
T Consensus 206 y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999999987643 2222 26789999999999994 699999997754
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=1.4e-07 Score=66.31 Aligned_cols=118 Identities=11% Similarity=0.019 Sum_probs=95.8
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC--------------hhhHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--------------SITFTILIDAF 72 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~ 72 (176)
++++|.+.|+...+.. +-+...|..+...+.+.|++++|+..|++......... ...|..+..+|
T Consensus 128 ~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554433321 22567888999999999999999999999887643221 47889999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 73 CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988654 8899999999999999999999999998875
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=2e-07 Score=58.38 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=79.8
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+... -+...|..+..+|...|++++|
T Consensus 21 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A 98 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARFDMADYKGA 98 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHH
Confidence 567899999999999998875 34789999999999999999999999999988753 3678889999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 030489 82 TMMFSKMLEKGPK 94 (176)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (176)
.+.|++..+....
T Consensus 99 ~~~~~~al~~~p~ 111 (164)
T 3sz7_A 99 KEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCC
Confidence 9999999876543
No 147
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.80 E-value=1.2e-08 Score=60.46 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=71.6
Q ss_pred hCCChhHHHHHHHHHHhCC--CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 030489 39 SLNRLDEAVQLFEKLTCVQ--LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (176)
Q Consensus 39 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 116 (176)
..|++++|+..|++..+.+ -+-+...+..+..+|...|++++|...|++..+..+. +..++..+..+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998864 2335677888889999999999999999999988765 788999999999999999999
Q ss_pred HHHHHHHHHC
Q 030489 117 FDVYEEMCEN 126 (176)
Q Consensus 117 ~~~~~~m~~~ 126 (176)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.80 E-value=1.6e-07 Score=54.38 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=78.5
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc--ChhhHHHHHHHHHhc-CCH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP--NSITFTILIDAFCKE-GRM 78 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~-~~~ 78 (176)
+.+.|++++|...|++..+.. +.+...|..+...+...|++++|++.+++..+.. +. +...+..+..++.+. |++
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 93 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKE 93 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCS
T ss_pred HHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCH
Confidence 456899999999999998764 4478889999999999999999999999988763 23 577888899999999 999
Q ss_pred HHHHHHHHHHHhcCCC
Q 030489 79 DDATMMFSKMLEKGPK 94 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~ 94 (176)
++|.+.++...+....
T Consensus 94 ~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 94 VEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhhcccC
Confidence 9999999999987543
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.79 E-value=6.2e-08 Score=57.86 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=77.1
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++...|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 467899999999999999875 448899999999999999999999999998886433 677888899999999999999
Q ss_pred HHHHHHHHhcC
Q 030489 82 TMMFSKMLEKG 92 (176)
Q Consensus 82 ~~~~~~~~~~~ 92 (176)
...|++..+..
T Consensus 105 ~~~~~~al~~~ 115 (121)
T 1hxi_A 105 LASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhC
Confidence 99999988754
No 150
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=3.9e-08 Score=68.12 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=82.0
Q ss_pred chhhCChhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCc-ChhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----GLEP-DIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~ 71 (176)
|.+.|++++|++.|++..+. |-+. ...+++.+...|.. |++++|+..|++.... +..+ ...++..+...
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 164 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 34567888888888876532 2111 24667778888877 8888888888876643 1111 13566777788
Q ss_pred HHhcCCHHHHHHHHHHHHhcC----CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 72 FCKEGRMDDATMMFSKMLEKG----PKAN-VVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
|.+.|++++|...|++..+.. ..+. ...+..+..++...|++++|...|++..
T Consensus 165 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888888888777532 1111 2256666677777788888888888876
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.79 E-value=2.9e-07 Score=55.00 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---HHHHHHHH
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS---ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN---VVTYSCLI 104 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 104 (176)
..+...+...|++++|+..|+...+.... +. ..+..+..++.+.|++++|...|+...+..+. + ..++..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34555666777777777777776664321 22 35666667777777777777777777765433 3 55566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 030489 105 DGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+|.+.|++++|...|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777776653
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=6.7e-08 Score=58.22 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=77.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CcC----hhhHHHHHHHHHhc
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--KPN----SITFTILIDAFCKE 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~ll~~~~~~ 75 (176)
+.+.|++++|++.|++..+.. |.+...|+.+..+|.+.|++++|++.+++..+... .++ ..+|..+..++...
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 96 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ 96 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence 567899999999999998875 44789999999999999999999999998876421 111 23567778889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYS 101 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (176)
|++++|++.|++..... |+..+..
T Consensus 97 ~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 97 NDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp TCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 99999999999988754 4544443
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.77 E-value=6.1e-07 Score=53.56 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=75.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccH---HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC---hhhHHHHHHHHHhc
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDI---ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN---SITFTILIDAFCKE 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~ 75 (176)
+.+.|++++|.+.|+...+..+. +. ..+..+..++.+.|++++|+..|+........ + ...+..+..++.+.
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHc
Confidence 45789999999999999876432 33 68888999999999999999999998876422 3 56678888999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030489 76 GRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~ 93 (176)
|++++|...|+++.+..+
T Consensus 90 g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp TCHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHCC
Confidence 999999999999998753
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1e-07 Score=64.97 Aligned_cols=123 Identities=8% Similarity=-0.044 Sum_probs=94.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC--hhhHHHHHHHHHhcCCHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--SITFTILIDAFCKEGRMD 79 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~ 79 (176)
+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...+.. .|. ...+..+-.++...|+++
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFT 188 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHH
Confidence 567899999999998888764 433366667778899999999999997554321 111 236777788899999999
Q ss_pred HHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 030489 80 DATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 127 (176)
+|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999987543324 44567778888999999999999999998753
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.76 E-value=4.9e-07 Score=61.89 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=41.6
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+... -+...+..+..++...|++++|..
T Consensus 16 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 93 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYDEAIA 93 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555554432 22444555555555555555555555555444321 134444444555555555555555
Q ss_pred HHHHHHh
Q 030489 84 MFSKMLE 90 (176)
Q Consensus 84 ~~~~~~~ 90 (176)
.|++..+
T Consensus 94 ~~~~al~ 100 (281)
T 2c2l_A 94 NLQRAYS 100 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.75 E-value=1.8e-07 Score=68.42 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=98.1
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc--------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD--------------IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI 67 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 67 (176)
|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..+++..+... .+...|..
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~ 356 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYR 356 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 5678999999999999987532221 68899999999999999999999999988643 36788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD-VYEEM 123 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m 123 (176)
+..+|...|++++|...|++..+.... +...+..+..++.+.++++++.+ .++.|
T Consensus 357 ~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 357 RGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654 77889999999999999887763 45554
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=1e-07 Score=60.40 Aligned_cols=109 Identities=12% Similarity=0.234 Sum_probs=87.6
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHhcCCH--
Q 030489 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-YFKSQNM-- 113 (176)
Q Consensus 37 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 113 (176)
+...|++++|+..++...+.. +.+...+..+...|...|++++|...|++..+.... +...+..+..+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 346788999999999887764 336788899999999999999999999999987644 77888888888 8899998
Q ss_pred HHHHHHHHHHHHCCCCCCCC-------------CChHHHHHHHHHHHHC
Q 030489 114 KSAFDVYEEMCENNISPNIA-------------GRPTEAMQLYDSMLRN 149 (176)
Q Consensus 114 ~~a~~~~~~m~~~~~~~~~~-------------~~~~~a~~~~~~m~~~ 149 (176)
++|...+++..... |+.. |++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999988753 3332 9999999999999865
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=1.1e-07 Score=61.25 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=93.8
Q ss_pred chhhCChhHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCc--ChhhHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR----GLE-PDIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP--NSITFTILID 70 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~ll~ 70 (176)
+...|++++|.+.+++..+. +.+ ....++..+...+...|++++|+..+++.... +-.| ....+..+..
T Consensus 36 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 115 (203)
T 3gw4_A 36 YAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVAT 115 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 45689999999999988752 222 24577889999999999999999999876643 2121 2345777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhc---CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 71 AFCKEGRMDDATMMFSKMLEK---GPKAN--VVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.+...|++++|...+++..+. ...+. ..++..+...+...|++++|...+++...
T Consensus 116 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 116 VALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 899999999999999987642 11112 23467888899999999999999987643
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=5.2e-08 Score=63.03 Aligned_cols=120 Identities=12% Similarity=0.013 Sum_probs=90.8
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-cC--------------hhhHHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-PN--------------SITFTILI 69 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~--------------~~~~~~ll 69 (176)
.|.++++.+.|+.-.+.. ......+..+...+...|++++|+..|++....... |+ ...+..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 345555555554332221 224567888889999999999999999998875322 10 26788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+|.+.|++++|...+++..+.... +...+..+..+|...|++++|...|++....
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988544 8889999999999999999999999998764
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=2.5e-07 Score=55.87 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=77.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..+++..+... .+...+..+..++...|++++|
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A 96 (137)
T 3q49_B 19 LFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYDEA 96 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHHhhHHHH
Confidence 467899999999999998875 44788999999999999999999999999887643 3678889999999999999999
Q ss_pred HHHHHHHHhc
Q 030489 82 TMMFSKMLEK 91 (176)
Q Consensus 82 ~~~~~~~~~~ 91 (176)
...|++..+.
T Consensus 97 ~~~~~~a~~~ 106 (137)
T 3q49_B 97 IANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.72 E-value=1.6e-07 Score=55.88 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=83.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CcC----hhhHHHHHHHHHhc
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--KPN----SITFTILIDAFCKE 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~ll~~~~~~ 75 (176)
+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..+++...... .++ ..++..+..++...
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 92 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE 92 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHh
Confidence 457899999999999998764 44788899999999999999999999998876532 112 67788888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 76 GRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
|++++|.+.|++..+.. |+...+..+....
T Consensus 93 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 93 EKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 99999999999998864 3555555554443
No 162
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=1e-06 Score=60.53 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=93.9
Q ss_pred hhhCChhHHHHHHHHHhhCCC---Ccc--HHHHHHHHHHHHhCCChhHHHHHHHHHHh---C-CCCc--ChhhHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGL---EPD--IITYNTIICGYCSLNRLDEAVQLFEKLTC---V-QLKP--NSITFTILIDA 71 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~-~~~~--~~~~~~~ll~~ 71 (176)
...|++++|++.+++..+... .+. ..+|+.+...|...|++++|+..|++... . +..+ ...++..+...
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 456899999999998875421 222 56899999999999999999999998762 2 1111 12578889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC----CC-CcHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 030489 72 FCKEGRMDDATMMFSKMLEKG----PK-ANVVTYSCLIDGYFKSQNMKSA-FDVYEEMC 124 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 124 (176)
|.+.|++++|...+++..+.. .. .-..+|..+..+|.+.|++++| ...+++..
T Consensus 206 y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999999999999876532 11 1267889999999999999999 77776543
No 163
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.71 E-value=5.8e-07 Score=72.84 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.|...++... +....+.+..
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHH
Confidence 4667777777777777777777777442 3666677777777777777777777776555432 2222233666
Q ss_pred HHHhcCCHHHHHHHHHHHHH-----CCCCCCCCCChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCcccc
Q 030489 106 GYFKSQNMKSAFDVYEEMCE-----NNISPNIAGRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 174 (176)
+|++.+++++...+.+.... .|......|++++|..+|... ..|..+...+.+.|+++.|
T Consensus 1176 aYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 66666666643333210000 000000006666666666653 2455555555555555444
No 164
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.69 E-value=3.7e-07 Score=65.02 Aligned_cols=115 Identities=13% Similarity=0.035 Sum_probs=93.5
Q ss_pred chhhCChhHHHHHHHHHhhC---------------CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHH
Q 030489 2 LIKECHLDAALKLFGQLTDR---------------GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFT 66 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 66 (176)
+.+.|++++|++.|++..+. -.+.+..+|..+..+|.+.|++++|+..+++..+... -+...+.
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~ 311 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALY 311 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 45789999999999988761 1123567888999999999999999999999887642 3677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFD 118 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 118 (176)
.+..+|...|++++|.+.|++..+.... +...+..+..++.+.++.+++.+
T Consensus 312 ~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 312 RRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999887644 77788888888888877776654
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.69 E-value=1.5e-07 Score=58.11 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=87.5
Q ss_pred chhhCChhHHHHHHHHHhhCCC---Cc--cHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCc-ChhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGL---EP--DIITYNTIICGYCSLNRLDEAVQLFEKLTCV----QLKP-NSITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~ 71 (176)
+...|++++|.+.+++..+... .+ ...++..+...+...|++++|+..+++.... +..+ ....+..+...
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 98 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 98 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4567889999999888765411 11 1247788888889999999999999876542 1111 13456677788
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 72 FCKEGRMDDATMMFSKMLEK----GP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+...|++++|.+.+++..+. +. .....++..+...|...|++++|...+++..+
T Consensus 99 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 99 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88899999999988877643 11 11235677788888889999999998887654
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.68 E-value=6.5e-07 Score=55.91 Aligned_cols=100 Identities=10% Similarity=0.079 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--------C---------CCcChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCV--------Q---------LKPNSITFTILIDAFCKEGRMDDATMMFSKM 88 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 88 (176)
....+......+.+.|++++|+..|.+.... . -+.+...|..+..+|.+.|++++|...++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4566778888889999999999999887654 0 0113457778888899999999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 89 LEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+.++. +...|..+..+|...|++++|...|++....
T Consensus 90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 888654 7888999999999999999999999988764
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.1e-06 Score=63.17 Aligned_cols=173 Identities=11% Similarity=0.057 Sum_probs=118.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCcc----------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCcCh--
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPD----------------IITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNS-- 62 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-- 62 (176)
+.+.|++++|++.|..+.+.....+ ...+..+...|.+.|++++|.+++...... +..++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 4578999999999999987632211 134788999999999999999999887643 111122
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC-C-
Q 030489 63 --ITFTILIDAFCKEGRMDDATMMFSKMLE----KGP-KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI-A- 133 (176)
Q Consensus 63 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~- 133 (176)
.+.+.+-..+...|+.+.|..+++.... .+. ..-..++..+...|...|++++|..++++....-...+. .
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 1223333444567899999999887753 222 223567888999999999999999999987543222221 1
Q ss_pred ---------------CChHHHHHHHHHHHHC--CC-CC-c--HHHHHHHHHHhhcccCcccc
Q 030489 134 ---------------GRPTEAMQLYDSMLRN--GI-MP-D--GLLLSTLADYNLQSSGSQEH 174 (176)
Q Consensus 134 ---------------~~~~~a~~~~~~m~~~--g~-~p-~--~~~~~~l~~~~~~~g~~~~A 174 (176)
|++++|..++++.... .+ .| . ...+..+...+...|++++|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999887621 12 22 1 23556666777777777665
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.67 E-value=1.2e-07 Score=66.65 Aligned_cols=120 Identities=19% Similarity=0.147 Sum_probs=59.8
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHH------------------HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDII------------------TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI 63 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 63 (176)
+.+.|++++|...|++.... .|+.. .|..+..+|.+.|++++|+..+++..+.. +.+..
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 265 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPK 265 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 45788999999999998765 33332 66667777777777777777777666543 22556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG-YFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~ 125 (176)
.+..+..+|...|++++|...|++..+.... +...+..+... ....+..+++..+|..|..
T Consensus 266 a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 266 ALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6666777777777777777777776655332 44444444443 2233455556666665543
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=1.6e-06 Score=59.23 Aligned_cols=123 Identities=10% Similarity=0.003 Sum_probs=85.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcC
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--VVTYSCLIDGYFKSQ 111 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 111 (176)
...+...|++++|.++|..+...+ |+......+...+.+.++++.|+..|+...... .|. ...+..+-.++...|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 355677888888888887776543 443355566667888888888888887554432 221 246777888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC--------------CChHHHHHHHHHHHHCCCCCcHHHHHHH
Q 030489 112 NMKSAFDVYEEMCENNISPNIA--------------GRPTEAMQLYDSMLRNGIMPDGLLLSTL 161 (176)
Q Consensus 112 ~~~~a~~~~~~m~~~~~~~~~~--------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l 161 (176)
++++|+..|++.......|... |+.++|..+|+++... .|+......|
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 9999999999887543324422 9999999999999875 4554444443
No 170
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.65 E-value=1.1e-06 Score=71.40 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=74.7
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
+.+.|++++|.+.|.+. -+...|..++.++.+.|++++|+++|....+.. ++....+.+..+|++.++++..
T Consensus 1115 ql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH
Confidence 45678999999998653 378888899999999999999999998766653 3333334477777777777653
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
..+. + .++...|..+...|...|++++|..+|...
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 3332 1 234455566667777777777777777664
No 171
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.64 E-value=3.9e-07 Score=67.14 Aligned_cols=123 Identities=11% Similarity=0.039 Sum_probs=93.6
Q ss_pred hhhCChhHHHHHHHHHhhC-----C--CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CC-Cc-ChhhHHHH
Q 030489 3 IKECHLDAALKLFGQLTDR-----G--LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-----QL-KP-NSITFTIL 68 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~-~~~~~~~l 68 (176)
-..|++++|+.++++..+. | .+....+++.|..+|...|++++|+.++++.... |. .| ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3579999999999887643 2 1224678999999999999999999999876531 21 12 34668889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-----cCCC-C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 69 IDAFCKEGRMDDATMMFSKMLE-----KGPK-A-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 69 l~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
...|...|++++|+.++++..+ .|.. | ...+.+.+-.++...+.+++|..++..+.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653 3433 1 234456677888889999999999998865
No 172
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.60 E-value=6e-06 Score=50.33 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=94.6
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh----cCCHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK----EGRMD 79 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~ 79 (176)
-.+++++|++.|++..+.| .|... +-..|...+..++|++.|++..+.| +...+..|-..|.. .++++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 4567899999999999987 33433 7777778888999999999998875 66778888888887 89999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFK----SQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 128 (176)
+|.++|++..+.| +...+..|-..|.. .+++++|...|++..+.|.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999999875 67788888888888 7899999999998877653
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.58 E-value=6.6e-07 Score=55.11 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-cC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-c
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK-PN----SITFTILIDAFCKEGRMDDATMMFSKMLEKG----PKA-N 96 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 96 (176)
..++..+...+...|++++|+..+++....... ++ ..++..+...+...|++++|...+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 467888899999999999999999887653111 11 2467788889999999999999999876431 111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 97 VVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
..++..+...+...|++++|...+++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678888999999999999999988754
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.57 E-value=3.3e-06 Score=52.59 Aligned_cols=99 Identities=11% Similarity=-0.029 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc------Ch-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP------NS-----ITFTILIDAFCKEGRMDDATMMFSKMLEK---- 91 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 91 (176)
...+......+.+.|++++|+..|++..+..... +. ..|+.+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4556677788889999999999999887652220 22 27888899999999999999999999887
Q ss_pred ---CCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 92 ---GPKANVVTY----SCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 92 ---~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
++. +...| ...-.++...|++++|+..|++..+.
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 654 67788 99999999999999999999988653
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.57 E-value=1.1e-06 Score=54.78 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=76.9
Q ss_pred chhhCChhHHHHHHHHHhhC--------C---------CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhh
Q 030489 2 LIKECHLDAALKLFGQLTDR--------G---------LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT 64 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 64 (176)
+.+.|++++|++.|....+. . .+.+...|..+..+|.+.|++++|+..++...+.. +.+...
T Consensus 21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a 99 (162)
T 3rkv_A 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKA 99 (162)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHH
Confidence 46789999999999988764 1 12245788999999999999999999999988764 336788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 93 (176)
|..+..+|...|++++|...|++..+..+
T Consensus 100 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 100 LFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998753
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.55 E-value=7e-07 Score=62.76 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh------------------hHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI------------------TFTILIDAFCKEGRMDDATMMFSK 87 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~ 87 (176)
....+..+...+.+.|++++|+..|++.... .|+.. .|..+..+|.+.|++++|...+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456778888899999999999999997764 34433 778888999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC--------------CChHHHHHHHHHHHH
Q 030489 88 MLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--------------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------~~~~~a~~~~~~m~~ 148 (176)
..+.... +...|..+..+|...|++++|...|++..... |+.. +..+.+...|.+|..
T Consensus 256 al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 256 VLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9988644 88899999999999999999999999876532 2222 445556666666653
No 177
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.50 E-value=4.4e-06 Score=63.94 Aligned_cols=160 Identities=9% Similarity=0.024 Sum_probs=117.5
Q ss_pred hhCChhHHHHHHHHHhhCCC---------Cc------------cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh
Q 030489 4 KECHLDAALKLFGQLTDRGL---------EP------------DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS 62 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 62 (176)
+.|++++|.++|+.+.+... .| ...+|...+....+.|..+.|.++|.+..+.-..+..
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~ 469 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP 469 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh
Confidence 57899999999999886410 12 2357888899888999999999999999876111223
Q ss_pred hhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC--------
Q 030489 63 ITFTILIDAFCKE-GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-------- 133 (176)
Q Consensus 63 ~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------- 133 (176)
..|......-.+. ++.+.|.++|+...+. ++-+...|...+......|+.+.|..+|++.......+...
T Consensus 470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3343322222333 4599999999999887 44577788899998999999999999999987654322222
Q ss_pred ------CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhh
Q 030489 134 ------GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNL 166 (176)
Q Consensus 134 ------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 166 (176)
|+.+.+.++.+++.+. .|+......+++-|.
T Consensus 549 ~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 549 FFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 9999999999999976 566666666665553
No 178
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.49 E-value=2.2e-06 Score=50.24 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 9 DAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKM 88 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 88 (176)
+.|++.|++..+.. +.+...+..+...+...|++++|+..|++..+... .+...+..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35777788777764 34678888888888888999999988888877542 35667778888888888888888888887
Q ss_pred Hhc
Q 030489 89 LEK 91 (176)
Q Consensus 89 ~~~ 91 (176)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 179
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.49 E-value=5.8e-06 Score=45.96 Aligned_cols=84 Identities=23% Similarity=0.295 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+..+. +..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 46778888889999999999999999887764 236677888889999999999999999999887543 6777777776
Q ss_pred HHHhcC
Q 030489 106 GYFKSQ 111 (176)
Q Consensus 106 ~~~~~g 111 (176)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=8.4e-07 Score=65.25 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFK 109 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 109 (176)
+..+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|.+.+++..+.... +..+|..+..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3444556778999999999999988764 236788999999999999999999999999988654 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 030489 110 SQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 110 ~g~~~~a~~~~~~m~~~~ 127 (176)
.|++++|.+.+++..+..
T Consensus 87 ~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999987753
No 181
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.45 E-value=6.1e-05 Score=52.18 Aligned_cols=160 Identities=11% Similarity=-0.023 Sum_probs=115.3
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCcChhhHHHHHHHH----Hhc---CC
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN--RLDEAVQLFEKLTCVQLKPNSITFTILIDAF----CKE---GR 77 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~---~~ 77 (176)
..++|+++++.+...++. +..+|+.--..+...+ ++++++++++.+.....+ +..+|+.--..+ .+. ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 346899999988887533 6778888888888888 899999999998876543 555565433333 444 78
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCCC-----------CC------hHH
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK--SAFDVYEEMCENNISPNIA-----------GR------PTE 138 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~-----------~~------~~~ 138 (176)
+++++.+++.+.+...+ +..+|+.-.-.+.+.|.++ +++++++++.+.+...... +. +++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 89999999999988765 8889999888888888888 9999999988765433333 43 788
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHhhcccC
Q 030489 139 AMQLYDSMLRNGIMPDGLLLSTLADYNLQSSG 170 (176)
Q Consensus 139 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 170 (176)
+++.++++.... .-|...++-+-..+.+.|+
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 888888887652 2234455555555555554
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.44 E-value=6e-06 Score=60.39 Aligned_cols=118 Identities=15% Similarity=0.030 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcC--------------hhhHHHHHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPN--------------SITFTILIDAFC 73 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~ 73 (176)
+++|.+.|+...+.. +-....|..+...+.+.|++++|+..|++..+...... ...|..+..+|.
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333221 12456788899999999999999999999887532211 578888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 030489 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 127 (176)
+.|++++|+..+++..+.... +...|..+..+|...|++++|+..|++..+..
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999988654 88999999999999999999999999988753
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.3e-06 Score=49.50 Aligned_cols=95 Identities=14% Similarity=0.028 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------HH
Q 030489 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN------VV 98 (176)
Q Consensus 25 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 98 (176)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|.+.+++..+.... + ..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 79 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSK 79 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 356778888999999999999999999988764 336778888889999999999999999999876533 3 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
.+..+..++...|+++.+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55566666666666655544443
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.43 E-value=6.5e-06 Score=48.17 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 44 DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 44 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
++++..|++..+.. +.+...+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35777888877654 336788888999999999999999999999988654 7889999999999999999999999987
Q ss_pred HH
Q 030489 124 CE 125 (176)
Q Consensus 124 ~~ 125 (176)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 185
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=5.6e-06 Score=56.60 Aligned_cols=100 Identities=11% Similarity=0.012 Sum_probs=88.1
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 030489 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLI 104 (176)
Q Consensus 25 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 104 (176)
.+...+..+...+.+.|++++|+..|++..+... .+...+..+..+|.+.|++++|...+++..+.... +...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 3567888899999999999999999999887642 37788889999999999999999999999988654 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 030489 105 DGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 105 ~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+|...|++++|...|++....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 186
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.39 E-value=7.4e-05 Score=54.54 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhC----CChhHHHHHHHHHHhCCCCcChhhHHHHHHH-H--HhcCCHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL----NRLDEAVQLFEKLTCVQLKPNSITFTILIDA-F--CKEGRMD 79 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~ 79 (176)
++++|++.|+...+.| +++...+..+...|... +++++|+..|++.. . -+...+..|-.. + ...++++
T Consensus 194 ~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHH
Confidence 7788888888887776 44666556666666554 67888888888776 3 244555555555 3 4578888
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCC-------------CCChHHHHH
Q 030489 80 DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-----NMKSAFDVYEEMCENNISPNI-------------AGRPTEAMQ 141 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~a~~ 141 (176)
+|.+.|++..+.| +...+..|-..|. .| ++++|...|++.. .|...-. ..+.++|..
T Consensus 269 ~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 269 QMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 8888888887766 5667777777776 45 8888888887654 2111000 037788888
Q ss_pred HHHHHHHCCC
Q 030489 142 LYDSMLRNGI 151 (176)
Q Consensus 142 ~~~~m~~~g~ 151 (176)
+|++..+.|.
T Consensus 344 ~~~~Aa~~g~ 353 (452)
T 3e4b_A 344 HLLTAARNGQ 353 (452)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhhCh
Confidence 8877776553
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=7.3e-06 Score=58.35 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhC---------------CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCV---------------QLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
...+..+...+.+.|++++|+..|++..+. --+.+..+|..+..+|.+.|++++|.+.+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345788889999999999999999988761 11224577888889999999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 92 GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
... +...|..+..+|...|++++|+..|++..+.
T Consensus 303 ~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 654 7889999999999999999999999988764
No 188
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.38 E-value=9e-06 Score=56.33 Aligned_cols=104 Identities=10% Similarity=0.106 Sum_probs=49.0
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChh--HHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC------
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLD--EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR------ 77 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~------ 77 (176)
+++++++++++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++.+.+.... |...|+.-.....+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 34455555555554443 224455554444444445444 555555555544332 44444443333333333
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
++++++.+++.+...+. |...|+.+-..+.+.|+
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 44555555555544433 55555555555544444
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.37 E-value=7.1e-06 Score=51.11 Aligned_cols=90 Identities=18% Similarity=0.108 Sum_probs=73.4
Q ss_pred chhhCChhHHHHHHHHHhhCCCCc------cH-----HHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCc-Chhh
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEP------DI-----ITYNTIICGYCSLNRLDEAVQLFEKLTCV-----QLKP-NSIT 64 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~-~~~~ 64 (176)
+.+.|++++|++.|++..+..+.. +. ..|..+..++.+.|++++|+..+++..+. .+.| +...
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A 100 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 100 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence 457899999999999998764321 22 38999999999999999999999998874 1134 4567
Q ss_pred H----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 65 F----TILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 65 ~----~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
| ...-.++...|++++|+..|++..+.
T Consensus 101 ~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 101 WISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7 88889999999999999999998754
No 190
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.33 E-value=1.6e-05 Score=60.91 Aligned_cols=50 Identities=6% Similarity=-0.067 Sum_probs=24.7
Q ss_pred hCChhHHH-HHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 030489 5 ECHLDAAL-KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 5 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 55 (176)
.|+.++|. ++|++.... +|.+...|...+....+.|++++|.++|+.+..
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444553 555555443 233444444555555555555555555555543
No 191
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.28 E-value=1.9e-05 Score=57.65 Aligned_cols=132 Identities=10% Similarity=0.068 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCcHHH
Q 030489 27 IITYNTIICGYCSLN---RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE----GRMDDATMMFSKMLEKGPKANVVT 99 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~ 99 (176)
+..+..|...|.+.| +.++|++.|++....|.. +...+..|...|... +++++|.+.|++.. .| +...
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 338888888888899 899999999998888743 555556666666554 78999999999987 33 5566
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCCC--------C-----ChHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 030489 100 YSCLIDG-Y--FKSQNMKSAFDVYEEMCENNISPNIA--------G-----RPTEAMQLYDSMLRNGIMPDGLLLSTLAD 163 (176)
Q Consensus 100 ~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~--------~-----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 163 (176)
+..|-.. | ...+++++|+..|++..+.|...-.. | +.++|.++|++.. .| +......+-.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~ 326 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQ 326 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHH
Confidence 6677666 4 46889999999999988766211111 4 8899999988877 32 3444444544
Q ss_pred Hhhc
Q 030489 164 YNLQ 167 (176)
Q Consensus 164 ~~~~ 167 (176)
.|..
T Consensus 327 ~y~~ 330 (452)
T 3e4b_A 327 IYRR 330 (452)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 4443
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=4.6e-05 Score=43.83 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+...+..+...+.+.|++++|.+.|++..+..+. +...|..+..+|.+.|++++|+..+++....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5667888889999999999999999999988654 7889999999999999999999999998764
No 193
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.00016 Score=50.93 Aligned_cols=160 Identities=17% Similarity=0.125 Sum_probs=118.5
Q ss_pred hCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc-C-CHHHH
Q 030489 5 ECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE-G-RMDDA 81 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a 81 (176)
.+..++|+++++.+...++. +..+|+.--..+...| .+++++++++.+.....+ +..+|+.---.+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34557899999999987633 7888888888888888 599999999999987654 777787666666555 6 88999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCCC-----------CC-------
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK--------SAFDVYEEMCENNISPNIA-----------GR------- 135 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~-----------~~------- 135 (176)
+++++.+.+.... +..+|+.-...+.+.|.++ ++++.++++.+.+...... +.
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 9999999988765 8899998777777777666 8999999988765433333 33
Q ss_pred hHHHHHHHHHHHHCCCCCcHH-HHHHHHHHhhccc
Q 030489 136 PTEAMQLYDSMLRNGIMPDGL-LLSTLADYNLQSS 169 (176)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g 169 (176)
++++++.+++.... .|+.. .++-+-..+.+.|
T Consensus 224 ~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 224 LQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 68899999888865 45544 4444333343333
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.21 E-value=2.3e-05 Score=44.80 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
+...+..+..+|.+.|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666666666666654322 445566666666666666666666666553
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.20 E-value=9e-06 Score=50.57 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=63.4
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChh----------HHHHHHHHHHhCCCCcChhhHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLD----------EAVQLFEKLTCVQLKPNSITFTILIDAF 72 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 72 (176)
.|.+++++|.+.++...+.. +.+...|+.+..++...++++ +|+..|++..+.... +..+|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 35677889999998888775 347888888888888877654 777777777765432 556677777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHhcC
Q 030489 73 CKEG-----------RMDDATMMFSKMLEKG 92 (176)
Q Consensus 73 ~~~~-----------~~~~a~~~~~~~~~~~ 92 (176)
.+.| ++++|.+.|++..+.+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 6653 6777777777777654
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.17 E-value=2.3e-05 Score=44.80 Aligned_cols=65 Identities=25% Similarity=0.290 Sum_probs=57.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+...+..+..+|.+.|++++|...|++..+..+. +..+|..+..+|...|++++|...|++....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677888899999999999999999999988655 7788999999999999999999999987653
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=2.1e-05 Score=58.06 Aligned_cols=112 Identities=10% Similarity=0.002 Sum_probs=80.8
Q ss_pred HHHhCCChhHHHHHHHHHHhC---CCCc----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-C-cHHHHH
Q 030489 36 GYCSLNRLDEAVQLFEKLTCV---QLKP----NSITFTILIDAFCKEGRMDDATMMFSKMLE-----KGPK-A-NVVTYS 101 (176)
Q Consensus 36 ~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~ 101 (176)
.+...|++++|+.++++.... -+.| ...+++.|...|...|++++|..++++..+ .|.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356899999999999876642 1112 346788999999999999999999988764 2322 2 345689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCCC----------------CChHHHHHHHHHHH
Q 030489 102 CLIDGYFKSQNMKSAFDVYEEMCE---NNISPNIA----------------GRPTEAMQLYDSML 147 (176)
Q Consensus 102 ~l~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~----------------~~~~~a~~~~~~m~ 147 (176)
.|...|...|++++|..++++... .-.-++.. +.+++|..+++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 11222322 55666666666665
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=9.8e-05 Score=53.05 Aligned_cols=146 Identities=12% Similarity=0.009 Sum_probs=102.4
Q ss_pred chhhCChhHHHHHHHHHhhCC-CCccH----HHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCc-ChhhHHHHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDRG-LEPDI----ITYNTIICGYCSLNRLDEAVQLFEKLTC----VQLKP-NSITFTILIDA 71 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~~~~~ll~~ 71 (176)
|.+.|++++|.+++..+.+.- ..++. .+.+.+-..+...|++++++.++..... .+..+ -..++..+...
T Consensus 65 y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 144 (434)
T 4b4t_Q 65 YVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATL 144 (434)
T ss_dssp HHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 567899999999998876531 11121 2333444445567899999999987653 22222 24567788899
Q ss_pred HHhcCCHHHHHHHHHHHHhc----C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-CCCC----------
Q 030489 72 FCKEGRMDDATMMFSKMLEK----G-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NIS-PNIA---------- 133 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~-~~~~---------- 133 (176)
+...|++++|..+++++... + -+....++..++..|...|++++|..++++.... ... |...
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 99999999999999987642 1 1223457888999999999999999999887532 111 1111
Q ss_pred -----CChHHHHHHHHHHH
Q 030489 134 -----GRPTEAMQLYDSML 147 (176)
Q Consensus 134 -----~~~~~a~~~~~~m~ 147 (176)
+++++|...|.+..
T Consensus 225 ~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 88899988887765
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.00018 Score=54.08 Aligned_cols=159 Identities=10% Similarity=0.002 Sum_probs=119.2
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCC----------hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC-
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR----------LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG- 76 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~- 76 (176)
.++|++.++.+.+.++. +..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 46789999999887533 67788877666666666 89999999999987654 7788887777778888
Q ss_pred -CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCCC---------------------
Q 030489 77 -RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMCENNISPNIA--------------------- 133 (176)
Q Consensus 77 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~--------------------- 133 (176)
+++++.+.++++.+.+.. +..+|+.-...+.+.| .++++++.++++.+.+..-...
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999998766 9999999988888989 8999999988876543321111
Q ss_pred ----CChHHHHHHHHHHHHCCCCCcH-HHHHHHHHHhhcccCc
Q 030489 134 ----GRPTEAMQLYDSMLRNGIMPDG-LLLSTLADYNLQSSGS 171 (176)
Q Consensus 134 ----~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~ 171 (176)
+.++++++.+++.... .|+. ..|.-+-..+.+.++.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCC
T ss_pred cccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCc
Confidence 3368888888888864 4554 4555555555555543
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.08 E-value=2.3e-05 Score=56.93 Aligned_cols=61 Identities=8% Similarity=-0.061 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFSKMLE-----KGP-KA-NVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
.+++.|..+|...|++++|..++++..+ .|. .| ...+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3445555555555555555555554432 111 11 1223555555555555555555555544
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.99 E-value=4.3e-05 Score=55.49 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKL 53 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m 53 (176)
.+++.+..+|...|++++|+.++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34444444454555555554444443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.98 E-value=9.1e-05 Score=40.89 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=57.0
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 75 (176)
+.+.|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+..+++..+... .+...+..+..++.+.
T Consensus 19 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhc
Confidence 457899999999999998764 34788899999999999999999999999887642 2556666666655443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=3.1e-05 Score=48.15 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=68.7
Q ss_pred HhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 38 CSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM----------DDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 38 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
.+.+.+++|++.++...+... -+...|+.+-.++...+++ ++|+..|++.++.++. +..+|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 455678999999999887753 3788888888888877664 5999999999998766 888999999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHHC
Q 030489 108 FKSQ-----------NMKSAFDVYEEMCEN 126 (176)
Q Consensus 108 ~~~g-----------~~~~a~~~~~~m~~~ 126 (176)
...| ++++|++.|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 8875 666777766666553
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.89 E-value=4e-05 Score=43.35 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 93 (176)
...+.+.|++++|+..|++..+... .+.. .+..+..++...|++++|.+.|++..+...
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4455667777777777777665432 2445 666666777777777777777777766643
No 205
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.87 E-value=0.00097 Score=46.68 Aligned_cols=143 Identities=6% Similarity=0.007 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC-HHHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN--RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR-MDDATMM 84 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~ 84 (176)
+++++.+++.+....++ +..+|+.-...+.+.+ .+++++.+++.+.+.... |...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 67889999998887543 8889988877787777 489999999999987644 77788776666677787 5899999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCCC-----------------
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKS--------------QNMKSAFDVYEEMCENNISPNIA----------------- 133 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~----------------- 133 (176)
++.+++.++. |..+|+.....+.+. +.++++++.+.+.....+...+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9999988766 889999888777765 45788888888876543222221
Q ss_pred -----CChHHHHHHHHHHHHCCCCCcH
Q 030489 134 -----GRPTEAMQLYDSMLRNGIMPDG 155 (176)
Q Consensus 134 -----~~~~~a~~~~~~m~~~g~~p~~ 155 (176)
+..+++++.++++.+. .|+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred chHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 2467888888888864 5664
No 206
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.83 E-value=0.0019 Score=45.28 Aligned_cols=137 Identities=9% Similarity=0.063 Sum_probs=106.0
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc----------
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNR-LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE---------- 75 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------- 75 (176)
.+++++++++.+.+.. +.|.++|+.-.-.+...|. ++++++.+..+.+..+. |...|+.....+.+.
T Consensus 125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccc
Confidence 4789999999999876 4499999988888888888 59999999999987654 888887766655544
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCCC-------
Q 030489 76 ----GRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS-----------QNMKSAFDVYEEMCENNISPNIA------- 133 (176)
Q Consensus 76 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~------- 133 (176)
+.++++.+.+.+.....+. |..+|+.+-..+.+. +.++++++.++++.+.. |+..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~ 279 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PENKWCLLTII 279 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--cccchHHHHHH
Confidence 4578899999999988765 999998776666665 45789999999887643 4433
Q ss_pred ---------CChHHHHHHHHHHHH
Q 030489 134 ---------GRPTEAMQLYDSMLR 148 (176)
Q Consensus 134 ---------~~~~~a~~~~~~m~~ 148 (176)
+..+++...+.++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHH
Confidence 555666667777764
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.81 E-value=0.00019 Score=52.13 Aligned_cols=86 Identities=6% Similarity=-0.062 Sum_probs=57.7
Q ss_pred hCChhHHHHHHHHHhhC-----CC--CccHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCC-Cc-ChhhHHHHHH
Q 030489 5 ECHLDAALKLFGQLTDR-----GL--EPDIITYNTIICGYCSLNRLDEAVQLFEKLTC-----VQL-KP-NSITFTILID 70 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~-~~-~~~~~~~ll~ 70 (176)
.|++++|+.++++..+. |. +....+++.|..+|...|++++|+.++++... .|. .| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46778888888766542 21 11346777888888888888888888877653 121 12 2345777777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 030489 71 AFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~ 90 (176)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888877665
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.81 E-value=0.00061 Score=49.47 Aligned_cols=93 Identities=10% Similarity=0.036 Sum_probs=71.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCC---CCc----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC-CC-cH
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQ---LKP----NSITFTILIDAFCKEGRMDDATMMFSKMLE-----KGP-KA-NV 97 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~ 97 (176)
..+..+.+.|++++|+.++++..... +.| ...+++.|...|...|++++|+.++++... .|. .| ..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34555678899999999999887531 122 246788899999999999999999998764 222 22 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 98 VTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
.+++.|...|...|++++|..++++..
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 568899999999999999999997653
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.00078 Score=50.69 Aligned_cols=133 Identities=8% Similarity=0.019 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC-CHHHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN--RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG-RMDDATMM 84 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~ 84 (176)
++++++.++.+.+..++ +..+|+.-..++.+.+ +++++++.++++.+.... +...|+.-.-.+.+.| .++++.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 89999999999987644 8999999888899999 779999999999988654 7888888777778888 89999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHC
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKS--------------QNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRN 149 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~ 149 (176)
++++++..+. +..+|+.....+.+. +.++++++.+++..... |+. +.|+...+-+...
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~----~saW~y~~~ll~~ 238 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PND----QSAWFYHRWLLGR 238 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSC----SHHHHHHHHHHSC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC--CCC----ccHHHHHHHHHhc
Confidence 9999998776 999999988888774 55789999998877643 332 3556666666543
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.0018 Score=39.17 Aligned_cols=85 Identities=13% Similarity=0.029 Sum_probs=72.8
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh----
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS----LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK---- 74 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 74 (176)
.+.+.+++|.+.|++..+.| +...+..|-..|.. .+++++|+++|++..+.| +...+..|-..|..
T Consensus 36 ~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 36 NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred HcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCC
Confidence 34567788999999998875 67888888888988 899999999999998875 56778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 030489 75 EGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~ 93 (176)
.++.++|.+.|++..+.|.
T Consensus 110 ~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 8999999999999998874
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.71 E-value=0.0022 Score=49.77 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=76.4
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+.|+++.|+++.+.+ .+...|..+...+.+.++++.|++.|..+.. |..+...+...|+.+...+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 345555555554322 2567777777777777777777777776542 4455555555666666555
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHCCCCCcH----HHHH
Q 030489 84 MFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRNGIMPDG----LLLS 159 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~ 159 (176)
+-+.....| -++....+|.+.|++++|.+++.++ +++++|..+-+.. .|.. ....
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~----------~~~~~A~~lA~~~-----~~~~~~i~~~~~ 787 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS----------QRFSEAAFLGSTY-----GLGDNEVNDIVT 787 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----------TCHHHHHHHHHHT-----TCCHHHHHHHHH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc----------CChHHHHHHHHHh-----CCChHHHHHHHH
Confidence 555544433 2234445566677888887777765 3456666655542 3333 3444
Q ss_pred HHHHHhhcccC
Q 030489 160 TLADYNLQSSG 170 (176)
Q Consensus 160 ~l~~~~~~~g~ 170 (176)
.....+...|+
T Consensus 788 ~~~~~L~~~~~ 798 (814)
T 3mkq_A 788 KWKENLILNGK 798 (814)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 44445555554
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.71 E-value=0.00095 Score=37.60 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 26 DIITYNTIICGYCSLNR---LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
+...+..+..++...++ .++|..++++..+.... ++.....+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555443333 45555555555544321 3444444445555555555555555555544
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.55 E-value=0.00092 Score=37.50 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=59.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---CChHHHHHHH
Q 030489 68 LIDAFCKEGRMDDATMMFSKMLEKGPKANVV-TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA---GRPTEAMQLY 143 (176)
Q Consensus 68 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~a~~~~ 143 (176)
....+.+.|++++|...|++..+.... +.. .|..+..+|...|++++|...|++....+...... +.+.+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~ 84 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNFY 84 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456778899999999999999988654 677 89999999999999999999999987753222111 4445555555
Q ss_pred HHH
Q 030489 144 DSM 146 (176)
Q Consensus 144 ~~m 146 (176)
++.
T Consensus 85 ~~~ 87 (99)
T 2kc7_A 85 NKD 87 (99)
T ss_dssp CCT
T ss_pred HHH
Confidence 443
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.54 E-value=0.0029 Score=36.23 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC------CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 030489 25 PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (176)
Q Consensus 25 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (176)
.+..-+..|...+.+.+++..|+..|+...+.- -.+....+..|..++.+.|+++.|...+++..+..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 355566677777778888888888777665421 1234556667777777777777777777777765433
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.50 E-value=0.0023 Score=35.97 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=57.0
Q ss_pred CcChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 030489 59 KPNSITFTILIDAFCKEGR---MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 129 (176)
+.|...+..+..++...++ .++|..++++..+.++. +..+...+...+.+.|++++|+..|+.+.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3466777777777754444 68999999999988765 8889999999999999999999999999876544
No 216
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.50 E-value=0.0053 Score=43.28 Aligned_cols=119 Identities=9% Similarity=0.033 Sum_probs=94.2
Q ss_pred hC-ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH--
Q 030489 5 EC-HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL-N-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD-- 79 (176)
Q Consensus 5 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-- 79 (176)
.| .+++++++++.+....++ +..+|+.--..+.+. + ++++++++++.+.+...+ |...|+--.-.+.+.+.++
T Consensus 101 l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 101 LNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp TTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccccc
Confidence 35 589999999999988644 888998877777776 6 899999999999987544 7777765544444444444
Q ss_pred ------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHC
Q 030489 80 ------DATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN-------MKSAFDVYEEMCEN 126 (176)
Q Consensus 80 ------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~ 126 (176)
++++.++++++.++. |...|+.....+.+.+. ++++++.+++....
T Consensus 179 ~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 899999999998766 99999999998888876 68888888877654
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.47 E-value=0.0016 Score=40.14 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHHHHH
Q 030489 45 EAVQLFEKLTCVQLKPNSITFTILIDAFCKEG---RMDDATMMFSKMLEKGPKA--NVVTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 45 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
.+.+-|.+....+. ++..+...+.-++++++ +.++++.+|++..+.+ .| ....+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33444444444333 45555555555555555 4446666666666553 12 344444555555666666666666
Q ss_pred HHHHHH
Q 030489 120 YEEMCE 125 (176)
Q Consensus 120 ~~~m~~ 125 (176)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.41 E-value=0.0067 Score=41.53 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=81.8
Q ss_pred cHHHHHHHHHH-HHhC--CC------hhHHHHHHHHHHhCCCCcC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 030489 26 DIITYNTIICG-YCSL--NR------LDEAVQLFEKLTCVQLKPN---SITFTILIDAFCKE-----GRMDDATMMFSKM 88 (176)
Q Consensus 26 ~~~~~~~ll~~-~~~~--~~------~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~ 88 (176)
....|..++.+ +... |. ...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 34556655554 3332 33 34566666666554 444 55777888888884 8999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC--CCCC----CChHHHHHHHHHHH
Q 030489 89 LEKGPKANVVTYSCLIDGYFKS-QNMKSAFDVYEEMCENNIS--PNIA----GRPTEAMQLYDSML 147 (176)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~--~~~~----~~~~~a~~~~~~m~ 147 (176)
.+.+..-+..++....+.++.. |+.+.+.+.+++....... |+.. +.-.+|..++.++.
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence 8876544578888888888884 8899999999998887666 4433 55566666665543
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.36 E-value=0.0049 Score=37.98 Aligned_cols=86 Identities=14% Similarity=0.019 Sum_probs=68.8
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCc--ChhhHHHHHHHHHhcCCHHH
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN---RLDEAVQLFEKLTCVQLKP--NSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~ 80 (176)
.....+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+++...+.. .| ....+..|.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 445667777877777664 68888888999999988 6679999999988864 24 34556667788899999999
Q ss_pred HHHHHHHHHhcCC
Q 030489 81 ATMMFSKMLEKGP 93 (176)
Q Consensus 81 a~~~~~~~~~~~~ 93 (176)
|.+.++.+.+..+
T Consensus 90 A~~y~~~lL~ieP 102 (152)
T 1pc2_A 90 ALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998754
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.34 E-value=0.0041 Score=35.57 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=56.5
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 60 PNSITFTILIDAFCKEGRMDDATMMFSKMLEKG------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.+..-+..|...+.+.++++.|...|+...+.- ..+...++..+..+|.+.|+++.|...+++....
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456667788999999999999999999877531 2346788999999999999999999999998764
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.33 E-value=0.0088 Score=42.42 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHHCCCCCcHHHHHH
Q 030489 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIMPDGLLLST 160 (176)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ 160 (176)
+..+|..+...+...|++++|...+++....+ |+.. |+.++|.+.+++.... .|...||..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 45555555544445556666666666555543 2211 5666666666555543 455555443
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.013 Score=37.08 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=85.6
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|..... |..+.-.|...|+.++..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4679999999998776 2788999999999999999999999987552 666777777788888776
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------CChHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------GRPTEAMQLYDSM 146 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~a~~~~~~m 146 (176)
++-+.....| -++.....+...|+++++.+++.+. |..|... |..+.|.++.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHHHHHHcCcHHHHHHHHHHh
Confidence 6655554443 2455556666778888888887553 2111111 5566666666655
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.25 E-value=0.021 Score=42.26 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTI--LIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
|...+....+.+..+.|..+|... +.. ..+...|.. .+... ..++.+.|..+|+...+.-.. +...|...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 334444444566677788888877 221 123333332 22221 123688888888887765322 445566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCCC--------CChHHHHHHHHHHH
Q 030489 108 FKSQNMKSAFDVYEEMCENNISPNIA--------GRPTEAMQLYDSML 147 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m~~~~~~~~~~--------~~~~~a~~~~~~m~ 147 (176)
.+.|+.+.|..+|+..... ...... |+.+.+..++++..
T Consensus 365 ~~~~~~~~aR~l~er~~k~-~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEKT-SRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSCCB-HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7788888888888875210 000000 77777777776665
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.17 E-value=0.018 Score=42.54 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=83.7
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHh-CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCS-LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
+.+..+.|..+|+.. +. .+.+...|......-.. .++.+.|..+|+...+.. +-++..+...++...+.|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 467789999999998 32 22355555533322222 336999999999988753 223445566677778899999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.+|+... .....|...+..-...|+.+.+.+++++..+
T Consensus 375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999972 2678899999888889999999999988753
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.08 E-value=0.0089 Score=35.55 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCCHHHH
Q 030489 41 NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDD---ATMMFSKMLEKGPK-ANVVTYSCLIDGYFKSQNMKSA 116 (176)
Q Consensus 41 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 116 (176)
.....+.+-|......|. |+..+-..+.-+++++..... ++.+++++.+.+.+ -.....-.|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555554444343 455555556666666665544 67777776665411 1333444555677777777777
Q ss_pred HHHHHHHHHC
Q 030489 117 FDVYEEMCEN 126 (176)
Q Consensus 117 ~~~~~~m~~~ 126 (176)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777653
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.03 E-value=0.013 Score=40.22 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc-CC
Q 030489 7 HLDAALKLFGQLTDRGLEPD---IITYNTIICGYCSL-----NRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE-GR 77 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~ 77 (176)
....|..++++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 456788888888876 444 67899999999995 99999999999999864332477777788888885 99
Q ss_pred HHHHHHHHHHHHhcCCC--CcHHHHHHH
Q 030489 78 MDDATMMFSKMLEKGPK--ANVVTYSCL 103 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~--~~~~~~~~l 103 (176)
.+.+.+.+++..+.... |+....|.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999999987665 554444433
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.018 Score=44.80 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhC------CCCc-Ch----------hhHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCV------QLKP-NS----------ITFTILI 69 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~------~~~~-~~----------~~~~~ll 69 (176)
++.|.++|+.+.+..+..+......++..+.+.+ +--+|++++.+..+. ...+ +. ...+.-.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 5789999999988732222222233444443333 234566666554321 1111 11 1222234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
+.+...|+++-|.++-++.....+. +-.+|..|..+|.+.|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 5577899999999999999988543 88999999999999999999999998873
No 228
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.68 E-value=0.016 Score=41.12 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=52.0
Q ss_pred CcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 59 KPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++....+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4566777777666677788888888888888875 5777777777888888888888888887765433
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.66 E-value=0.044 Score=33.17 Aligned_cols=67 Identities=10% Similarity=0.177 Sum_probs=37.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
+...+...++.....|.-++-.+++.++... .+|+....-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444555556666666666666666664332 344555555666666666666666666666655554
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.62 E-value=0.051 Score=33.40 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=73.6
Q ss_pred CccHHHHHHHHHHHHhCCCh------hHHHHHHHHHHhCCCCcChhh----HHHHHH---HHHhcCCHHHHHHHHHHHHh
Q 030489 24 EPDIITYNTIICGYCSLNRL------DEAVQLFEKLTCVQLKPNSIT----FTILID---AFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~~----~~~ll~---~~~~~~~~~~a~~~~~~~~~ 90 (176)
+-|..+|-..+...-+.|+. ++..++|++.... ++|+..- |--|-- .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34778888888888888888 8888899887764 4554311 111111 12334799999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 030489 91 KGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 129 (176)
.+-.. ...|......-.+.|+..+|.+++......+..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 64443 777777777778899999999999987764433
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.022 Score=44.26 Aligned_cols=77 Identities=17% Similarity=0.071 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGP-------KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
+...|..+...+.+.++++.|.+.|..+.+... .-+..-...+.......|+++.|..+|.+.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~---------- 749 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA---------- 749 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc----------
Confidence 567777777777778888887777776643210 112223333444444445555554444332
Q ss_pred CChHHHHHHHHHHH
Q 030489 134 GRPTEAMQLYDSML 147 (176)
Q Consensus 134 ~~~~~a~~~~~~m~ 147 (176)
|++++|.+++.++.
T Consensus 750 g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 750 GDIQGAKDLLIKSQ 763 (814)
T ss_dssp TCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcC
Confidence 56777777776654
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.01 E-value=0.12 Score=31.35 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC------------CChHHHHHHHHHHHHCCCC
Q 030489 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA------------GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~a~~~~~~m~~~g~~ 152 (176)
+....+..++.+...|+-++-.+++..+.. +..|+.. |+..++.+++.+.-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 455666677777777777777777777532 1222222 7777777777777777653
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.98 E-value=0.083 Score=37.83 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCCCChHHH
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC-----ENNISPNIAGRPTEA 139 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~~~a 139 (176)
...++..+...|+++++...++.+....+ .+...|..+|.+|.+.|+..+|++.|+... +.|+.|. .+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~-----~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-----PTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-----HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC-----HHH
Confidence 44566667777777777777777776643 477777777777777777777777777653 3466665 345
Q ss_pred HHHHHHHHH
Q 030489 140 MQLYDSMLR 148 (176)
Q Consensus 140 ~~~~~~m~~ 148 (176)
.++++.+..
T Consensus 248 ~~l~~~il~ 256 (388)
T 2ff4_A 248 RALNERILR 256 (388)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 555555553
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.84 E-value=0.094 Score=37.54 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcHHHH
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE-----KGPKANVVTY 100 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 100 (176)
..++..+...|++.+++..+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345666778888888888888876653 44777888899999999999999988887653 5788776543
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.81 E-value=0.14 Score=30.47 Aligned_cols=86 Identities=16% Similarity=0.037 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhH---HHHHHHHHHhCCCC-cChhhHHHHHHHHHhcCCHHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDE---AVQLFEKLTCVQLK-PNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
+..+.+-|......|. ++..+-..+..++.+...... ++.++......+.+ -...-...|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445556665555553 688888888888988887666 89999998876421 133344556788999999999999
Q ss_pred HHHHHHhcCCC
Q 030489 84 MFSKMLEKGPK 94 (176)
Q Consensus 84 ~~~~~~~~~~~ 94 (176)
.++.+.+..+.
T Consensus 96 ~~~~lL~~eP~ 106 (126)
T 1nzn_A 96 YVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHhCCC
Confidence 99999987543
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.75 E-value=0.12 Score=29.37 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=49.1
Q ss_pred HHhCC-ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 37 YCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 37 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
+.+.. +.-+..+-++.+......|++....+.+.+|.+.+++.-|..+|+-++..- .....+|..++.
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33444 566777778888888888888888888888888888888888888887542 223445665554
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.22 Score=31.44 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
.....+.|+++.|.++.+.+ -+...|..|.....+.|+++-|++.|....+ |..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556889999999998776 2788999999999999999999999987653 33444555556666
Q ss_pred HHHHHHHHHHHHCCCCCCCC-------CChHHHHHHHHHH
Q 030489 114 KSAFDVYEEMCENNISPNIA-------GRPTEAMQLYDSM 146 (176)
Q Consensus 114 ~~a~~~~~~m~~~~~~~~~~-------~~~~~a~~~~~~m 146 (176)
++..++-+.....|- .+.. |+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g~-~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED-FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc-HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555444443332221 1111 8888888887554
No 238
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.15 E-value=0.26 Score=29.60 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 45 EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 45 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
+..+-++.+......|++......+.+|.+.+++.-|..+|+-++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555554444
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.19 Score=39.30 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH------CCCCCCCC----
Q 030489 66 TILIDAFCKEGR-MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ-NMKSAFDVYEEMCE------NNISPNIA---- 133 (176)
Q Consensus 66 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~------~~~~~~~~---- 133 (176)
..|+..+.-.++ .+.|..+|+++.......+......++..+.+.+ +--+|.+++.+..+ ....+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555555 5778888888887653322222233333333322 22234444443321 11111110
Q ss_pred -------------------CChHHHHHHHHHHHHCCCCCc-HHHHHHHHHHhhcccCccccC
Q 030489 134 -------------------GRPTEAMQLYDSMLRNGIMPD-GLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 134 -------------------~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 175 (176)
++++.|+++-++.... .|+ ..+|..|..+|...|+++.|.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHH
Confidence 8899999999998865 555 779999999999999999875
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=1 Score=32.88 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=89.1
Q ss_pred hCChhHHHHHHHHHhhC-----CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCC------------------c
Q 030489 5 ECHLDAALKLFGQLTDR-----GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLK------------------P 60 (176)
Q Consensus 5 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~------------------~ 60 (176)
.|+++.|++.+-.+.+. ....+......++..|.+.++|+...+.+..+.+. |.. |
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 35677788777665532 24456777888999999999988876655444322 211 1
Q ss_pred --Ch-------------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC---cHHHHHHHHHHHH
Q 030489 61 --NS-------------------------ITFTILIDAFCKEGRMDDATMMFSKMLEK--GPKA---NVVTYSCLIDGYF 108 (176)
Q Consensus 61 --~~-------------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~ 108 (176)
+. .....|...+-..|++.+|.+++.++... +... -...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 11 11134567777888888888888887632 1111 1345666778888
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCCCC----------------CChHHHHHHHHHHH
Q 030489 109 KSQNMKSAFDVYEEMCEN--NISPNIA----------------GRPTEAMQLYDSML 147 (176)
Q Consensus 109 ~~g~~~~a~~~~~~m~~~--~~~~~~~----------------~~~~~a~~~~~~m~ 147 (176)
..+++..|..+++++... ...+... +++.+|.+.|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888888888888876421 1111111 77777777776664
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.29 E-value=0.48 Score=29.17 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhCCCCccH-HHHHHHHHH------HHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 9 DAALKLFGQLTDRGLEPDI-ITYNTIICG------YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~-~~~~~ll~~------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
++..++|++.... ++|+. ..|..-+.. +...++.++|.++|+.+.+.+-.- ...|......=.+.|++.+|
T Consensus 36 ~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kA 113 (161)
T 4h7y_A 36 NKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKS 113 (161)
T ss_dssp HHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHH
Confidence 7777888877764 45532 111111111 123478999999999987653333 44555555555889999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
.+++...+..+..| .......+.
T Consensus 114 RkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 114 KQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHHHhccCCCc-HHHHHHHHH
Confidence 99999999987764 334444333
No 242
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.88 E-value=1.1 Score=32.50 Aligned_cols=85 Identities=16% Similarity=0.062 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCCC----
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN---NISPNIA---- 133 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~---- 133 (176)
.+...+...|.+.|+++.|.+.|.++... +...-...+-.++..+...++|..+...+.+.... +..+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667888899999999999999988854 33445667788888899999999999888887532 2111111
Q ss_pred ----------CChHHHHHHHHHHH
Q 030489 134 ----------GRPTEAMQLYDSML 147 (176)
Q Consensus 134 ----------~~~~~a~~~~~~m~ 147 (176)
+++..|-+.|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 88888888887765
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.59 E-value=2 Score=35.42 Aligned_cols=166 Identities=11% Similarity=0.052 Sum_probs=91.5
Q ss_pred hhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc-----------------------
Q 030489 4 KECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP----------------------- 60 (176)
Q Consensus 4 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~----------------------- 60 (176)
+.++++.|.++..... .+...-..+..++...|++++|.+.|.+... |+..
T Consensus 824 ~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 897 (1139)
T 4fhn_B 824 LFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNL 897 (1139)
T ss_dssp HHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCS
T ss_pred HhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccccc
Confidence 3455555555443322 2333334566677788888888888865421 1100
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC---
Q 030489 61 NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--AN--VVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA--- 133 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--- 133 (176)
-..-|.-++..+-+.+.++.+.++-...++...+ ++ ...|..+.+++...|++++|...+..+......-+..
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~L 977 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDF 977 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1123556677777777777777766655543211 11 1257778888888888888877776654432211111
Q ss_pred -------------------CChHHHHHHHHHHHH-C-CCCCcHHHHHHHHHHhhcccCccccC
Q 030489 134 -------------------GRPTEAMQLYDSMLR-N-GIMPDGLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 134 -------------------~~~~~a~~~~~~m~~-~-g~~p~~~~~~~l~~~~~~~g~~~~A~ 175 (176)
|..++..+++...-+ . .+...+.-|..|-.-....|+...|+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA 1040 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAA 1040 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHH
Confidence 556666665544321 1 11222244666666677777776654
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.22 E-value=0.77 Score=27.49 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=47.4
Q ss_pred CCCcChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 57 QLKPNSITFTILIDAFCKEGR---MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 57 ~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+-.|+..|-....-+++++.. ..+++.+++++.+.+..-....+-.|.-++.+.|+++.|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334566555555556666554 4467788888877664334556667777888888888888888887753
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.00 E-value=0.69 Score=26.31 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=46.3
Q ss_pred HHhcC-CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 72 FCKEG-RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 72 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
+-+.. +.-++.+-+..+...+..|++.+....+.+|.+.+++.-|.++++-++.
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444 5567788888888889999999999999999999999999999998865
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.20 E-value=2.5 Score=30.72 Aligned_cols=52 Identities=17% Similarity=-0.008 Sum_probs=27.9
Q ss_pred hhhCChhHHHHHHHHHhhC--CCCccHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDR--GLEPDIITYNTIICGYCSLNRLDEAVQLFEKLT 54 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 54 (176)
.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.+..
T Consensus 142 ~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 142 AQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556666666666665543 222234455555566666666666655555543
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.70 E-value=0.65 Score=28.99 Aligned_cols=52 Identities=10% Similarity=-0.086 Sum_probs=35.0
Q ss_pred hhhCChhHHHHHHHHHhhC-CCCcc-------HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDR-GLEPD-------IITYNTIICGYCSLNRLDEAVQLFEKLT 54 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 54 (176)
...+.++.|+-+.+.+... +.+|+ ..++..+.+++...+++.+|...|++..
T Consensus 31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4567778887777765432 11222 2356677788888889998888888754
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.65 E-value=2.2 Score=28.96 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=68.2
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CcChhhHHHHHHHHHhcCCHH
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL--KPNSITFTILIDAFCKEGRMD 79 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~ 79 (176)
+.+.|++++|++....-++.. |-|...-..++..+|-.|+|++|.+-++...+... .|...+|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a-------- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-------- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH--------
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH--------
Confidence 356788888888887777664 44777788888888888999988888887776421 1122233333332
Q ss_pred HHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 030489 80 DATMMFSKMLEKGPKA-----NVVTYSCLIDGYFK--SQNMKSAFDVYEEMCE 125 (176)
Q Consensus 80 ~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~ 125 (176)
+..=.++..-+-.| ...-...++.+... .|+.++|..+-.+..+
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 12122222222111 22234455555544 4888888888887754
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.42 E-value=0.81 Score=31.01 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=56.6
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHH
Q 030489 35 CGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--ANVVTYSCLIDGYF 108 (176)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 108 (176)
....+.|+++++++....-.+.. +-|...-..++..+|-.|++++|.+.++...+.... |....|..+|.+=.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH
Confidence 44678999999999998887774 337777778889999999999999999998876543 23345677776654
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.39 E-value=1.5 Score=26.61 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=47.2
Q ss_pred CcChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 59 KPNSITFTILIDAFCKEGR---MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 59 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
.|+..+-....-+++++.. ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566665556666666654 4567788888877655434555556677888888888888888888764
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.32 E-value=1.7 Score=27.11 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCCCccH--HHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCcCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 21 RGLEPDI--ITYNTIICGYCSLNRLDEAVQLFEKLTCV-QLKPNS-------ITFTILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 21 ~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
.|+.|.. .++..-+..+...+.++.|+-+.+.+... +..|+. .++..+.+++...+++.+|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555543 34456677888999999999988876543 122332 3556677899999999999999998542
Q ss_pred cC------------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 91 KG------------------------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 91 ~~------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
.. ...+...--.+..+|.+.+++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 10 0111233344778888999999999888764
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.25 E-value=5.6 Score=32.85 Aligned_cols=110 Identities=9% Similarity=0.023 Sum_probs=78.0
Q ss_pred chhhCChhHHHHHHHHHhhC----CC------------------CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 030489 2 LIKECHLDAALKLFGQLTDR----GL------------------EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~----~~------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 59 (176)
|...|++++|.++|.+.... +. ..-..-|..++..+-+.+.++.++++-....+..-.
T Consensus 852 ~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~ 931 (1139)
T 4fhn_B 852 YLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET 931 (1139)
T ss_dssp HHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS
T ss_pred HHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC
Confidence 56789999999999765321 00 001234678888899999999999888776654211
Q ss_pred --cC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 60 --PN--SITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 60 --~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
++ ...|..+++++...|++++|...+-.+..... -......|+..++..|..
T Consensus 932 ~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 932 DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 11 12578899999999999999999987766543 456777788777776654
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.16 E-value=2 Score=25.92 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 77 RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+.-+..+-+..+...+..|++.+....+.+|.+.+|+.-|.++|+-++..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44566777888888889999999999999999999999999999988653
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.65 E-value=2.6 Score=25.23 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=54.8
Q ss_pred CCCccHHHHHHHHHHHHhCCCh---hHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 030489 22 GLEPDIITYNTIICGYCSLNRL---DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 22 ~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 93 (176)
+..|+..+-.....++.+.... .+++.+++...+.+..-.......|.-++.+.|+++.|.+..+.+.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 4567777777777778777764 57889998888765322345566677899999999999999999988654
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.16 E-value=2.3 Score=24.11 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=19.8
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 030489 37 YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK 91 (176)
Q Consensus 37 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 91 (176)
+.+.|++++|..+.+.+ ..||...|-.|.. .+.|..+++..-+..+...
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 33444444444433221 1344444433322 3344444444444444433
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.99 E-value=2.4 Score=24.09 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=20.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 71 AFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
.+...|++++|..+.+.+ +.||...|-.|-.. +.|-.+++..-+..+
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 344555555555444333 24455555444332 334444444444333
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.97 E-value=0.002 Score=47.42 Aligned_cols=134 Identities=12% Similarity=0.043 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDG 106 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (176)
+..|..++.+..+.|.+++-+.++...++. .-++..=+.|+-+|++.++..+.++++ ..|+..-...+.+-
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr 153 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR 153 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence 334444455555555555544444333322 112233334455555555443322221 12333334444455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCC---CChHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcccCccccC
Q 030489 107 YFKSQNMKSAFDVYEEMCENNISPNIA---GRPTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQSSGSQEHC 175 (176)
Q Consensus 107 ~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 175 (176)
|...|.++.|.-+|..+..-..-.... +++..|.+.-++ .-+..||..+-.+|...+++..|-
T Consensus 154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHH
Confidence 555555555554444332211111110 444444333222 235678999999999998888773
No 258
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=86.18 E-value=3.8 Score=24.78 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=32.0
Q ss_pred HHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 17 QLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 17 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3445565554432 23333444444 556666666666665555666655556666555543
No 259
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=85.61 E-value=4.1 Score=24.27 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=31.5
Q ss_pred HhhCCCCccHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 18 LTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 18 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
+.+.|.+++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455555443322 3444444444 5556666666666665555555555555555555543
No 260
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=85.15 E-value=4.6 Score=24.54 Aligned_cols=44 Identities=5% Similarity=0.006 Sum_probs=19.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcC
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 76 (176)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333334444445555555544443444444444444444444
No 261
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=85.10 E-value=4.7 Score=24.52 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=31.9
Q ss_pred HhhCCCCccHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 18 LTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 18 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455555444322 3344444444 4555666666666655555555655556655555543
No 262
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=84.54 E-value=4.9 Score=24.25 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=30.7
Q ss_pred HhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC
Q 030489 18 LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 18 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 77 (176)
+.+.|.+++..=. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455555443322 3344444445555566666666655555555555555555555554
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.48 E-value=9.3 Score=27.49 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=63.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCcC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--C--CCCcHHHHHH
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPN-----SITFTILIDAFCKEGRMDDATMMFSKMLEK--G--PKANVVTYSC 102 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~ 102 (176)
.+...|...|++.+|.+++..+.+.--..| ...+-.-+..|...+++.++...+...... . ++|.....-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 688899999999999999988876421222 234555667889999999999999876532 2 2333322222
Q ss_pred HH--HHHH-hcCCHHHHHHHHHHHH
Q 030489 103 LI--DGYF-KSQNMKSAFDVYEEMC 124 (176)
Q Consensus 103 l~--~~~~-~~g~~~~a~~~~~~m~ 124 (176)
.. ..+. ..++|..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22 2334 6889999988887753
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=83.21 E-value=6 Score=24.27 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhCCCCcChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH
Q 030489 44 DEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97 (176)
Q Consensus 44 ~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 97 (176)
+++.++|..|..+|+--... .|-.-...+-..|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44899999999988765544 4566677788999999999999999888766644
No 265
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=82.73 E-value=7.9 Score=25.32 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhhCCCCccH--HHH-----HHHHHHHHhCCChhHHHHHHHHHHhC
Q 030489 8 LDAALKLFGQLTDRGLEPDI--ITY-----NTIICGYCSLNRLDEAVQLFEKLTCV 56 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~--~~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~ 56 (176)
++.|+.+|+.+.+.-.-++. ... ...+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 46788889888765322111 111 24455688899999999999887765
No 266
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=82.51 E-value=7.5 Score=25.74 Aligned_cols=84 Identities=11% Similarity=0.119 Sum_probs=50.5
Q ss_pred chhhCChhHHHHHHHHHhhC--CCCc----cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc
Q 030489 2 LIKECHLDAALKLFGQLTDR--GLEP----DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE 75 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 75 (176)
+...+++++|.++.++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..+.+.
T Consensus 28 ~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L~rL 104 (235)
T 2d2s_A 28 ELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENMIKL 104 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Confidence 34568899999998877643 2232 112223333333333334444445555533 45666777788899999
Q ss_pred CCHHHHHHHHHHH
Q 030489 76 GRMDDATMMFSKM 88 (176)
Q Consensus 76 ~~~~~a~~~~~~~ 88 (176)
|+.++|.++|=+.
T Consensus 105 g~~~~A~~lfL~~ 117 (235)
T 2d2s_A 105 GLPEQALDLFLQN 117 (235)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHH
Confidence 9999999887544
No 267
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=82.38 E-value=6.5 Score=24.07 Aligned_cols=66 Identities=8% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCC
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR--MDDATMMFSKMLEKGPK 94 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~ 94 (176)
...+.++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...++-
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34567788888888888888888887532111 22333344444544322 34566666666655544
No 268
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.22 E-value=6.9 Score=24.33 Aligned_cols=55 Identities=7% Similarity=0.160 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCCCcChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH
Q 030489 44 DEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV 98 (176)
Q Consensus 44 ~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (176)
+.+.++|..|..+|+--... .|-.-...+-..|++.+|.++|..-++.+-.|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 45778999999998765544 45566677888999999999999999887776544
No 269
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=81.90 E-value=4.5 Score=25.01 Aligned_cols=57 Identities=7% Similarity=0.043 Sum_probs=27.6
Q ss_pred hCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCC
Q 030489 55 CVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEK--GPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 55 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 112 (176)
+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 345544332 223344444444555555555555554 444455554455555555553
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.66 E-value=5.4 Score=22.67 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=57.3
Q ss_pred CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 030489 40 LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 40 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ +.||...|-.|-.. +.|-.+++..-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHH
Confidence 3467888888888887653 2222223346678999999999887665 47899999887664 77888888777
Q ss_pred HHHHHHCC
Q 030489 120 YEEMCENN 127 (176)
Q Consensus 120 ~~~m~~~~ 127 (176)
+..+...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 76665544
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.50 E-value=6.8 Score=23.76 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCCccHHHHHHHHHHHHhCCCh---hHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 030489 22 GLEPDIITYNTIICGYCSLNRL---DEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 22 ~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 93 (176)
+..|+..+-.....++.+.... .+++.+++.....+..-...-...|.-++.+.|+++.|.+..+.+.+..+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3467888877888888887764 57888998888754322334445567889999999999999999998754
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.81 E-value=5.9 Score=22.55 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=60.1
Q ss_pred ChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHH
Q 030489 7 HLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFS 86 (176)
Q Consensus 7 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 86 (176)
..++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+. .||...|-.|.. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 56788888888887753 22222233445779999999988875543 789888877655 57788888888887
Q ss_pred HHHhcCCCCcHHHHH
Q 030489 87 KMLEKGPKANVVTYS 101 (176)
Q Consensus 87 ~~~~~~~~~~~~~~~ 101 (176)
.+...| .|....|.
T Consensus 94 ~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 94 RLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCC-CHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 877765 34554443
No 273
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=80.25 E-value=4.9 Score=21.32 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=31.6
Q ss_pred HhhCCCCccHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC
Q 030489 18 LTDRGLEPDIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR 77 (176)
Q Consensus 18 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 77 (176)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445565555433 24444444443 445566666666655545555565556665555553
No 274
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=79.45 E-value=5.2 Score=23.61 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=27.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34444545555566666666666665555566665566666555543
No 275
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=78.94 E-value=4.6 Score=24.19 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCH
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRM 78 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 78 (176)
..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345555555556666777777776666566666666666666666544
No 276
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=78.93 E-value=8.6 Score=23.33 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=46.0
Q ss_pred HHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 50 FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 50 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
-+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-..
T Consensus 15 ~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345667787755443 3456666667778889999999998887788888888888888887543
No 277
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=78.85 E-value=8.6 Score=23.32 Aligned_cols=63 Identities=11% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHhCCCCcChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 51 EKLTCVQLKPNSITFTILIDAFCKEG-RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 51 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 456678887665443 3556665565 67789999999998888888888888888888887654
No 278
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=78.09 E-value=8.9 Score=23.06 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=46.7
Q ss_pred HHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 51 EKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 51 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|-..
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 456677887665433 455666666777889999999998887778888888888888877543
No 279
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=77.55 E-value=8.9 Score=22.76 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=45.9
Q ss_pred HHHhCCCCcChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 52 KLTCVQLKPNSITFTILIDAFCKEG-RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 52 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-..
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 46677887665443 4556666666 67889999999998888888888888888888877544
No 280
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=76.69 E-value=9.2 Score=23.03 Aligned_cols=61 Identities=7% Similarity=0.011 Sum_probs=45.4
Q ss_pred HHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 51 EKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 51 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 45667788876543 33455555556 778999999999888888888888888888888754
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.30 E-value=19 Score=25.92 Aligned_cols=145 Identities=12% Similarity=0.022 Sum_probs=93.2
Q ss_pred chhhCChhHHHHHHHHHhhC-CCCc---cHHHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCcChhhH------HHHHH
Q 030489 2 LIKECHLDAALKLFGQLTDR-GLEP---DIITYNTIICGYCSLN-RLDEAVQLFEKLTCVQLKPNSITF------TILID 70 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~------~~ll~ 70 (176)
|.+.|+.++..+++...+.. +..| +......+++.+.... ..+.-.++..+..+..- -...+| ..+..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~kL~~ 107 (394)
T 3txn_A 29 YKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEARLIA 107 (394)
T ss_dssp HHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 56778888888888776542 1111 4566778888887654 34444555544433210 122334 25788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCC-----------
Q 030489 71 AFCKEGRMDDATMMFSKMLEKGP-----KANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN--NISPNI----------- 132 (176)
Q Consensus 71 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~----------- 132 (176)
.|...|++.+|.+++.++.+.-- ..-..+|-.-+..|...+++.++...+...... .+.+++
T Consensus 108 l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~G 187 (394)
T 3txn_A 108 LYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSG 187 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhh
Confidence 99999999999999988875311 123345666778889999999999999876432 221222
Q ss_pred ------CCChHHHHHHHHHHH
Q 030489 133 ------AGRPTEAMQLYDSML 147 (176)
Q Consensus 133 ------~~~~~~a~~~~~~m~ 147 (176)
.+++..|...|-+..
T Consensus 188 i~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 188 ILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 277888888776654
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=76.19 E-value=9.7 Score=22.49 Aligned_cols=65 Identities=8% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCC
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR--MDDATMMFSKMLEKGPK 94 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~ 94 (176)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456677777777777777777776522111 22223333444444332 34555666666555443
No 283
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=76.18 E-value=6.8 Score=20.74 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHhCCCCcChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 030489 51 EKLTCVQLKPNSITFTILIDAFCKEG-RMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN 112 (176)
Q Consensus 51 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (176)
..+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34666777766544 34556666554 566778888888877766777787777777777664
No 284
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=75.94 E-value=1.9 Score=21.70 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 030489 9 DAALKLFGQLTDRGLEPDIITYNTIICGY 37 (176)
Q Consensus 9 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 37 (176)
++|.+.|.+|++..-.++..+|...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34455554444322222344454444444
No 285
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.62 E-value=21 Score=26.06 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhC--CCCcC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcH--H
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPN---SITFTILIDAFCKEGRMDDATMMFSKMLE----KGPKANV--V 98 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~--~ 98 (176)
...|...+...|++.+|.+++..+... |.... ...+...+..|...+++.+|..++..... ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356788899999999999999988643 32211 34566778889999999999999988642 2223332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
.+...+..+...++|.+|-+.|.+...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456667777888899888888877644
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.87 E-value=12 Score=24.67 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhCCCCcChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 030489 44 DEAVQLFEKLTCVQLKPNSI-TFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN 96 (176)
Q Consensus 44 ~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 96 (176)
+.+.++|..|...|+--... .|-.....+-..|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 57889999999998765544 455667778899999999999999988876664
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.87 E-value=14 Score=23.81 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 75 EGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
++....+.++|..|...|+-. -..-|-.....+-..|++.+|.++|+.-.+.+-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344556666666666544321 333455555566666666666666665555443
No 288
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.56 E-value=19 Score=25.03 Aligned_cols=86 Identities=8% Similarity=0.077 Sum_probs=47.2
Q ss_pred HHHHhCCChhHHHH----HHHHHHhCCCCcChhhHHHHHHHHHhcCCHH-HHHHHHHHHH----hcC--CCCcHHHHHHH
Q 030489 35 CGYCSLNRLDEAVQ----LFEKLTCVQLKPNSITFTILIDAFCKEGRMD-DATMMFSKML----EKG--PKANVVTYSCL 103 (176)
Q Consensus 35 ~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l 103 (176)
..+.+.|+..-|-+ +.+-+.+.+.+++......++..+.....-+ .=.++...++ +.| ..-+......+
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~ 140 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTI 140 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 33444555444333 2344445677777777777777765533111 1123333333 222 22366677777
Q ss_pred HHHHHhcCCHHHHHHHH
Q 030489 104 IDGYFKSQNMKSAFDVY 120 (176)
Q Consensus 104 ~~~~~~~g~~~~a~~~~ 120 (176)
...|.+.|++.+|..-|
T Consensus 141 a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 141 GSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHH
Confidence 78888888888877755
No 289
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=74.10 E-value=13 Score=23.15 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=66.4
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccH-HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhh---HHHHHHHHHh-cCC
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDI-ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT---FTILIDAFCK-EGR 77 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~-~~~ 77 (176)
++.|+++....++.. ++.... ..-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|.-++.. ..+
T Consensus 14 a~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 14 AMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 456777765555533 322111 1122455555667777766777777888887765432 2333332222 233
Q ss_pred HHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcCCH-HHHHHHHHHHHH-CCCCCCCC
Q 030489 78 MDDATMMFSKMLEKGPKANVV---TYSCLIDGYFKSQNM-KSAFDVYEEMCE-NNISPNIA 133 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~-~~a~~~~~~m~~-~~~~~~~~ 133 (176)
.....++.+.+.+.|..++.. -.+..+...+..+.. ..-..+++.+.+ .|..++..
T Consensus 90 ~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~ 150 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC
T ss_pred hhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc
Confidence 445566777777777665542 221222222233332 344556777777 77766655
No 290
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=71.92 E-value=8.1 Score=22.76 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNM 113 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 113 (176)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45666666777888999999999888778888888888888888754
No 291
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=70.60 E-value=7.6 Score=23.22 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 030489 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMK 114 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 114 (176)
..++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3466777777778889999999998888888888888888888887543
No 292
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=70.24 E-value=15 Score=27.87 Aligned_cols=90 Identities=6% Similarity=-0.094 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHh--CCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 030489 26 DIITYNTIICGYCS--LNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCL 103 (176)
Q Consensus 26 ~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 103 (176)
....|..-+..+.. ..+.........++..+-.--+..--.-++..|.+.|-.+.|.++++.+-..-.. +...| ..
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eA 555 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ES 555 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HH
Confidence 44556555555553 3455566667766665532335666778899999999999999999988766544 55556 77
Q ss_pred HHHHHhcCCHHHHH
Q 030489 104 IDGYFKSQNMKSAF 117 (176)
Q Consensus 104 ~~~~~~~g~~~~a~ 117 (176)
+..|+|.|+++++.
T Consensus 556 L~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 556 IANFSRAGKYELVK 569 (570)
T ss_dssp --------------
T ss_pred HHHHHHcCChhhcc
Confidence 77888999887753
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=70.07 E-value=7.3 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=12.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHh
Q 030489 34 ICGYCSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 34 l~~~~~~~~~~~a~~~~~~m~~ 55 (176)
+-.|.+.|.+++|.+++++...
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 3446666666666666666443
No 294
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=69.19 E-value=0.57 Score=35.00 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=105.7
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.+.|++++-.+.+...++.. .++..=+.|+-+|++.++..+..+++ -.||..-...+.+-|...|.++.|.
T Consensus 94 ~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAK 164 (624)
T 3lvg_A 94 NTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAK 164 (624)
T ss_dssp TTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSS
T ss_pred HhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHH
Confidence 46788888888877666552 24455568999999999987754443 2467777777888888888888888
Q ss_pred HHHHHHHhcC--------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCCC------CC
Q 030489 83 MMFSKMLEKG--------------------PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNIS-PNIA------GR 135 (176)
Q Consensus 83 ~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~------~~ 135 (176)
-+|..+.+.. -.-++.||-.+-.+|...+++.-|..+--.+.-..-. +... |.
T Consensus 165 ilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~ 244 (624)
T 3lvg_A 165 LLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY 244 (624)
T ss_dssp TTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCC
Confidence 7776653321 1347789999999999999998887766665432111 1111 88
Q ss_pred hHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhcc
Q 030489 136 PTEAMQLYDSMLRNGIMPDGLLLSTLADYNLQS 168 (176)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 168 (176)
+++.+.+++.-... -+...-+|+.|.-.|++-
T Consensus 245 f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 245 FEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 88888888776621 234455677666666553
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=69.15 E-value=17 Score=22.34 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=53.9
Q ss_pred hhHHHHHHHH-HhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCcChhhHHHHHHHHHhcCCHHH
Q 030489 8 LDAALKLFGQ-LTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCV--QLKPNSITFTILIDAFCKEGRMDD 80 (176)
Q Consensus 8 ~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~ 80 (176)
.+.+++-+.+ +.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4555655554 45678887654 456777787888889999999999887 777788888888888888887754
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.52 E-value=22 Score=22.95 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=41.6
Q ss_pred CCChhHHHHHHHHHHhCCCCcCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 030489 40 LNRLDEAVQLFEKLTCVQLKPNS-ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA 95 (176)
Q Consensus 40 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 95 (176)
.+...++.++|..|...|+--.. ..|-.....+-..|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44466888888888888765444 345566677788899999999998888776665
No 297
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.57 E-value=44 Score=25.71 Aligned_cols=115 Identities=6% Similarity=-0.014 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHHhhCCCCccHHHHH----HHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 030489 6 CHLDAALKLFGQLTDRGLEPDIITYN----TIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDA 81 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 81 (176)
.+.+.|..+|....+.. ..+..... .+.......+...++...+....... ++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 36678888887776432 22322222 23333333443556666666544432 3333344444555677899999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 82 TMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
...|+.|...... .....--+..++.+.|+.++|..+|+.+.
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9888887653211 23333345567777888888888887763
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=65.52 E-value=20 Score=21.83 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=10.2
Q ss_pred hhhCChhHHHHHHHHHh
Q 030489 3 IKECHLDAALKLFGQLT 19 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~ 19 (176)
...|+.++|...++++.
T Consensus 20 ~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 20 LLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHCCHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHhC
Confidence 34566666666666654
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.34 E-value=26 Score=23.01 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCCh
Q 030489 58 LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRP 136 (176)
Q Consensus 58 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 136 (176)
+.-|+.-...-+. |+.. .+.+.++|..|...|+-. -...|......+-..|++.+|.++|+.-.+.+-.|- ...
T Consensus 113 YknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~--~rL 187 (223)
T 4aez_C 113 YKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF--LRF 187 (223)
T ss_dssp GTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH--HHH
T ss_pred ccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH--HHH
Confidence 3445544443333 3332 346778999998776532 455688888889999999999999998777655543 334
Q ss_pred HHHHHHH
Q 030489 137 TEAMQLY 143 (176)
Q Consensus 137 ~~a~~~~ 143 (176)
.++..-|
T Consensus 188 ~~~~~~F 194 (223)
T 4aez_C 188 QQKYQQF 194 (223)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455444
No 300
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=64.39 E-value=45 Score=25.39 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHH
Q 030489 75 EGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSM 146 (176)
Q Consensus 75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m 146 (176)
........+..+++..+=+--+..--.-++..|.+.|-.+.|.++++.+-..-..-. +.-+|+..|.+.
T Consensus 494 ~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g---~~geAL~~f~rA 562 (570)
T 3f3f_C 494 TGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAH---NIIESIANFSRA 562 (570)
T ss_dssp SSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------
T ss_pred ccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCc---cHHHHHHHHHHc
Confidence 345566677777777553333566677888999999999999999998865433322 222555555444
No 301
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=62.67 E-value=20 Score=21.04 Aligned_cols=47 Identities=11% Similarity=-0.070 Sum_probs=22.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
.|...+..++.+-|.++++...+.| +...|.+++-.|...=+++-+.
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 3444444555555555555554443 3344444444444444444433
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=62.57 E-value=30 Score=22.82 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=59.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC--CCCc----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 030489 32 TIICGYCSLNRLDEAVQLFEKLTCV--QLKP----NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLID 105 (176)
Q Consensus 32 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 105 (176)
--++.+.-..++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 4577888999999999999876643 2221 112233334444443344445555555533 446777778889
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 030489 106 GYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 106 ~~~~~g~~~~a~~~~~~m~ 124 (176)
.+.+.|+-++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 9999999999999997653
No 303
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=61.33 E-value=20 Score=20.18 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCCcChhhHHHHHHHHHhcC
Q 030489 46 AVQLFEKLTCVQLKPNSITFTILIDAFCKEG 76 (176)
Q Consensus 46 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 76 (176)
+.++.++...-|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3344444444455555444444444443333
No 304
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=60.17 E-value=20 Score=19.89 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 030489 49 LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAF 117 (176)
Q Consensus 49 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 117 (176)
++..+.+.|+- +..-...+-. .....+.++|.+++..+...|. .+|..++.++...|+..-|.
T Consensus 26 vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHH
Confidence 55556665543 3333332222 1012467888888888776653 47778888887666655543
No 305
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=60.01 E-value=28 Score=21.55 Aligned_cols=76 Identities=5% Similarity=0.082 Sum_probs=49.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC--cHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH--CCCCCCCC-CChHHHH
Q 030489 72 FCKEGRMDDATMMFSKMLEKGPKA--NVVTYSCLID-G-----YFKSQNMKSAFDVYEEMCE--NNISPNIA-GRPTEAM 140 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~m~~--~~~~~~~~-~~~~~a~ 140 (176)
+...|++-+|.++|+..-.....+ ....|..||. . ..+.|++..|..++.+... ....+... =+.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv~~L~ 121 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVR 121 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCHHHHH
Confidence 344599999999999998775555 5667777777 2 2457999999999988754 23333222 3455545
Q ss_pred HHHHHHH
Q 030489 141 QLYDSML 147 (176)
Q Consensus 141 ~~~~~m~ 147 (176)
...+.+.
T Consensus 122 ~~~~~~l 128 (161)
T 2ijq_A 122 TTVTNAL 128 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
No 306
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=59.49 E-value=16 Score=18.72 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 74 (176)
++.++..+++..-.++++..+.+..+.|.. +..+|-.-++..++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 455555666656666666666666666532 55555444444433
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.92 E-value=25 Score=20.67 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=9.6
Q ss_pred hhhCChhHHHHHHHHHh
Q 030489 3 IKECHLDAALKLFGQLT 19 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~ 19 (176)
...|+.++|...++++.
T Consensus 18 ~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 18 LLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHCCHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHhC
Confidence 34556666666665554
No 308
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=57.70 E-value=20 Score=21.31 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=6.0
Q ss_pred HHHHHhcCCHHHH
Q 030489 69 IDAFCKEGRMDDA 81 (176)
Q Consensus 69 l~~~~~~~~~~~a 81 (176)
+...+..|+.+-+
T Consensus 79 L~~A~~~~~~~~v 91 (165)
T 3twr_A 79 LHNACSYGHYEVA 91 (165)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHcCcHHHH
Confidence 3334455555533
No 309
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=57.55 E-value=44 Score=23.10 Aligned_cols=46 Identities=13% Similarity=0.282 Sum_probs=30.0
Q ss_pred HHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 030489 49 LFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (176)
Q Consensus 49 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (176)
+++.+.+.|+.|...++.-++..+.+.=.++.+..+|+.+...|..
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 4445556666666666666666666666677777777777666543
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.20 E-value=31 Score=21.14 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=49.6
Q ss_pred CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 030489 58 LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (176)
Q Consensus 58 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 131 (176)
..-|+.-...-+..--...+ +.++|..|...|+-. -..-|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 64 YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34455554444443333333 789999998776532 455688888889999999999999998877765553
No 311
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=56.51 E-value=48 Score=24.42 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcCh--------hhHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNS--------ITFTI-LIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------~~~~~-ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
...|.++..|.+.++..-+..+++.+...+..|+. .+|.- +...+...+++.+|.+.|.+..
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34678999999999999999999999887664332 33332 3345566777777776665443
No 312
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=54.56 E-value=28 Score=19.94 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=12.8
Q ss_pred hhhCChhHHHHHHHHHhh
Q 030489 3 IKECHLDAALKLFGQLTD 20 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~ 20 (176)
++.|++++|.+.+++..+
T Consensus 33 Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 33 AKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 567778888777776654
No 313
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=53.65 E-value=32 Score=23.98 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=26.0
Q ss_pred HHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 030489 51 EKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 51 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
+.+.+.|+.|...++.-++..+.+.=.++.+..+|+-+...|
T Consensus 217 ~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 217 AHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 344455666666666666666666666666777776666554
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.39 E-value=14 Score=24.03 Aligned_cols=90 Identities=12% Similarity=0.011 Sum_probs=49.2
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHH-------HHHHHHHHHH--hCCChhHHHHHHHHHHhCC---------CC-cChh
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDII-------TYNTIICGYC--SLNRLDEAVQLFEKLTCVQ---------LK-PNSI 63 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~~-~~~~ 63 (176)
++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +. .|..
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~ 92 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR 92 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEE
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccC
Confidence 46788888888888777776555533 3345554442 5677777766666543211 11 0112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKANV 97 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 97 (176)
-.+ .+...+..|+.+-+..++ +.|..++.
T Consensus 93 g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~ 121 (260)
T 3jxi_A 93 GQT-ALHIAIERRCKHYVELLV----EKGADVHA 121 (260)
T ss_dssp SBC-HHHHHHHTTCHHHHHHHH----HTTCCTTC
T ss_pred CCC-HHHHHHHcCCHHHHHHHH----hCCCCcCc
Confidence 222 344455667776554444 45554443
No 315
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=53.12 E-value=20 Score=17.89 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=4.6
Q ss_pred ChhHHHHHHHHH
Q 030489 42 RLDEAVQLFEKL 53 (176)
Q Consensus 42 ~~~~a~~~~~~m 53 (176)
+.+.|+..+-+|
T Consensus 38 dvd~aI~~LL~m 49 (59)
T 1wgl_A 38 NKDAAINSLLQM 49 (59)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 333333333333
No 316
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.57 E-value=60 Score=23.07 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLT 54 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~ 54 (176)
+.++.=|...++.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 444555555555555555555554
No 317
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.40 E-value=56 Score=22.69 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=51.0
Q ss_pred hhhCChhHHHHH----HHHHhhCCCCccHHHHHHHHHHHHhCCChh-HHHHHHHHH----HhCC--CCcChhhHHHHHHH
Q 030489 3 IKECHLDAALKL----FGQLTDRGLEPDIITYNTIICGYCSLNRLD-EAVQLFEKL----TCVQ--LKPNSITFTILIDA 71 (176)
Q Consensus 3 ~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m----~~~~--~~~~~~~~~~ll~~ 71 (176)
.+.|+...|-++ .+-+.+.+.+++......++..+..-..-+ .-.++.+.+ .+.| ..-|+.....+...
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 345555554443 444555678888888888888776633211 122333333 2332 22367778888889
Q ss_pred HHhcCCHHHHHHHH
Q 030489 72 FCKEGRMDDATMMF 85 (176)
Q Consensus 72 ~~~~~~~~~a~~~~ 85 (176)
|.+.+++.+|+..|
T Consensus 144 ~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 144 LLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HhhcCCHHHHHHHH
Confidence 99999999888765
No 318
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=51.95 E-value=11 Score=22.11 Aligned_cols=54 Identities=4% Similarity=0.047 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
..|--.|...+.+++.+-|.++++-+++.| +...|..++..|...=+++.++++
T Consensus 33 kLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 33 SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 346667888888999999999999998876 778888999888888777776554
No 319
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=51.76 E-value=99 Score=25.39 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 030489 137 TEAMQLYDSMLR 148 (176)
Q Consensus 137 ~~a~~~~~~m~~ 148 (176)
.+++.++..+..
T Consensus 646 ~~aid~L~~L~~ 657 (963)
T 4ady_A 646 QSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 556666666653
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=50.91 E-value=42 Score=20.79 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCc--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKP--NSITFTILID-A-----FCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 90 (176)
..|...+..+ ..|++-+|-++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 34 ~~~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455555544 5599999999999887765455 5567777777 3 3568999999999998764
No 321
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.87 E-value=67 Score=22.83 Aligned_cols=102 Identities=8% Similarity=0.142 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCCC--CChHHHH
Q 030489 65 FTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDVYEEMCENNISPNIA--GRPTEAM 140 (176)
Q Consensus 65 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~--~~~~~a~ 140 (176)
...++.=|...++.++|.+.++++..-.+. ...+...+..++-+.++ .+.+.+++..+...|+.+... ..+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 467788888889999999998888632222 33444455555544333 456777888877766554443 3344444
Q ss_pred HHHHHHHHCCCCCcHHHH-HHHHHHhhccc
Q 030489 141 QLYDSMLRNGIMPDGLLL-STLADYNLQSS 169 (176)
Q Consensus 141 ~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g 169 (176)
+.++.+.-. .|....| ..++.-+...|
T Consensus 299 ~~ldDl~lD--iP~A~~~la~~varai~~g 326 (358)
T 3eiq_C 299 NEIPDINLD--VPHSYSVLERFVEECFQAG 326 (358)
T ss_dssp HHHHHHHHH--CTTHHHHHHHHHHHHHHHT
T ss_pred HhccHhhcc--cccHHHHHHHHHHHHHHCC
Confidence 444444422 3554444 33444443333
No 322
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.49 E-value=85 Score=23.67 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CcCh--hhH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 030489 26 DIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-KPNS--ITF-TILIDAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 90 (176)
-...+|.+++.|...+.++.|..+.....-.-. .++. .+| ..+...+.-.+++.+|.+.|....+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 357789999999999999999999988642100 1111 122 2234566777888888888777654
No 323
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.47 E-value=65 Score=22.29 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCCC--CChHHHHH
Q 030489 66 TILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDVYEEMCENNISPNIA--GRPTEAMQ 141 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~--~~~~~a~~ 141 (176)
..++.=|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+.+..++..+...|+.+... ..+.+..+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~ 248 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYN 248 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45677777788888888888877522111 22333344444444322 456667777776655544433 33333334
Q ss_pred HHHHHH
Q 030489 142 LYDSML 147 (176)
Q Consensus 142 ~~~~m~ 147 (176)
.++.+.
T Consensus 249 ~l~Dl~ 254 (307)
T 2zu6_B 249 EIPDIN 254 (307)
T ss_dssp HHHHHH
T ss_pred hccHhh
Confidence 444443
No 324
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=48.42 E-value=1.1e+02 Score=24.86 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhhCC----CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 8 LDAALKLFGQLTDRG----LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
.+.|.+.|+.....+ ++|+. -..+...-.+.|..++-..+++...... +..--..++.+++...+.....+
T Consensus 705 ~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~ 779 (909)
T 4fke_A 705 ENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNR 779 (909)
T ss_dssp HHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHH
Confidence 356777787765432 34443 2333334445566666666666666542 44445667888888888888778
Q ss_pred HHHHHHhc
Q 030489 84 MFSKMLEK 91 (176)
Q Consensus 84 ~~~~~~~~ 91 (176)
+++.....
T Consensus 780 ~L~~~l~~ 787 (909)
T 4fke_A 780 YLGYTLNP 787 (909)
T ss_dssp HHHHTTCT
T ss_pred HHHHHhCC
Confidence 77776643
No 325
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=48.30 E-value=17 Score=19.41 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=16.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 93 PKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
.+|++.||+-+.+.+-+..-...++.+.+++
T Consensus 32 LPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 32 IPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp CCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4556666666666555554444555544443
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.03 E-value=47 Score=20.60 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 030489 58 LKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNI 132 (176)
Q Consensus 58 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 132 (176)
..-|+.-...-|..--.+++ +.++|..|...|+-. -...|......+-..|++.+|.++|+.-.+.+-.|..
T Consensus 59 YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34466555554433333334 677899998776533 4556777888888999999999999998887655543
No 327
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.52 E-value=71 Score=22.48 Aligned_cols=70 Identities=7% Similarity=0.091 Sum_probs=42.7
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHhCCChh-HHHHHHHHHH----hCC--CCcChhhHHHHHHHHHhcCCHHHHHHHH
Q 030489 16 GQLTDRGLEPDIITYNTIICGYCSLNRLD-EAVQLFEKLT----CVQ--LKPNSITFTILIDAFCKEGRMDDATMMF 85 (176)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 85 (176)
+-+.+.++++|......|+..+.....-+ .=..+.+.+. +.| ..-|+.....+...|.+.+++.+|+..|
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34445577788888778887776655421 1122222222 222 2336667777788888888888887665
No 328
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=46.90 E-value=46 Score=20.09 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=62.9
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhH--HHHHHHHHhcCCHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF--TILIDAFCKEGRMDD 80 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~ 80 (176)
++.|+.+.+..+++.-...--.++..-++. +...+..|+.+- ++.+.+.|..++.... .+.+...+..|+.+-
T Consensus 13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 87 (179)
T 3f6q_A 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSP-LHWACREGRSAV----VEMLIMRGARINVMNRGDDTPLHLAASHGHRDI 87 (179)
T ss_dssp HHHTCHHHHHHHHHCTTSCTTCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCCCH-HHHHHHcCcHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 345666655555443211000123333333 334446666543 3444555655543221 133444556677654
Q ss_pred HHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC----------CChHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANV---VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA----------GRPTEAMQLYDSML 147 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~~~~a~~~~~~m~ 147 (176)
+.. +.+.|..++. .-.+.| ...+..|+.+-+ +.+.+.|..++.. -....-..+.+.+.
T Consensus 88 v~~----Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 88 VQK----LLQYKADINAVNEHGNVPL-HYACFWGQDQVA----EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HHH----HHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHH----HHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HHH----HHHcCCCCCccCCCCCCHH-HHHHHcCCHHHH----HHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 443 4444544432 222333 333456666543 3444455555433 22233345566666
Q ss_pred HCCCCCc
Q 030489 148 RNGIMPD 154 (176)
Q Consensus 148 ~~g~~p~ 154 (176)
+.|..++
T Consensus 159 ~~g~~~~ 165 (179)
T 3f6q_A 159 KMGQNLN 165 (179)
T ss_dssp HTTCCCS
T ss_pred HhhcCcc
Confidence 6666554
No 329
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.69 E-value=57 Score=21.16 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=4.7
Q ss_pred HHHHHhhCCCC
Q 030489 14 LFGQLTDRGLE 24 (176)
Q Consensus 14 ~~~~~~~~~~~ 24 (176)
+++.+.+.|..
T Consensus 54 ~v~~Ll~~g~~ 64 (285)
T 1wdy_A 54 IVELLLRHGAD 64 (285)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 33444444443
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.85 E-value=1.2e+02 Score=24.71 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------c
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLE---------------------K 91 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~ 91 (176)
++..+...|..+-+.++.... +.++..-..+..+|...|++++|...|++... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 566666777776655444332 22333334566677788888888887765321 0
Q ss_pred C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 92 G-PKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 92 ~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
. ......-|..++..+-+.+-++.+.++-+...+.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0 1113346788888888888888888888776653
No 331
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.44 E-value=27 Score=17.10 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQN--MKSAFDVYEEMC 124 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~ 124 (176)
+.++++.+.|+++. ....++.+.|. .+.|++.+.+|.
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 44566666666543 33345555555 777777776663
No 332
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=45.39 E-value=74 Score=22.15 Aligned_cols=111 Identities=8% Similarity=0.113 Sum_probs=69.9
Q ss_pred hHHHHHHHHHhhC---CCC---ccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 030489 9 DAALKLFGQLTDR---GLE---PDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDAT 82 (176)
Q Consensus 9 ~~a~~~~~~~~~~---~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 82 (176)
++|.-+|..+.+. ... |........+..+.+.-+. ++++.+.+.|+.|...++.-++..+.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4577777777654 122 2222233333334333332 46677778899988888888888888888899999
Q ss_pred HHHHHHHhcCCCCc-HHH--HHHHHHHH----HhcCCHHHHHHHHHHH
Q 030489 83 MMFSKMLEKGPKAN-VVT--YSCLIDGY----FKSQNMKSAFDVYEEM 123 (176)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~--~~~l~~~~----~~~g~~~~a~~~~~~m 123 (176)
.+|+.+...|.... ... .-+++..+ ....++++++.+++.+
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 99999998765432 222 22333222 3357888888887654
No 333
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=45.34 E-value=38 Score=18.79 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 030489 27 IITYNTIICGYCSLNRLDEAVQLFEKL 53 (176)
Q Consensus 27 ~~~~~~ll~~~~~~~~~~~a~~~~~~m 53 (176)
.+.+......+.+.|++++|++.+...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 345667788888999999998877654
No 334
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.06 E-value=66 Score=21.39 Aligned_cols=101 Identities=8% Similarity=0.007 Sum_probs=44.7
Q ss_pred HHHHHhhCCCCccH---HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhh---HHHHHHHHHhcCCHHHHHHHHHH
Q 030489 14 LFGQLTDRGLEPDI---ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT---FTILIDAFCKEGRMDDATMMFSK 87 (176)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~ 87 (176)
+.+.+.+.|..++. .-++.| ...+..|+.+-+.-++ +.|..++... +.+.+...+..|..+-+..
T Consensus 77 ~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~---- 147 (285)
T 3kea_A 77 IVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY---- 147 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----
T ss_pred HHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHH----
Confidence 33444455544432 222333 3344556655443333 3344443322 1344555556666554333
Q ss_pred HHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 88 MLEKGPKA-NVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 88 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
+.+.|..+ +...-...+...+..|+.+-+.-+++.-
T Consensus 148 Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 148 FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 33333322 1112233334445667776666555543
No 335
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=44.74 E-value=27 Score=21.95 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=25.1
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 030489 60 PNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKS 110 (176)
Q Consensus 60 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 110 (176)
|....++-++..++...-.+.++-.+.+..+.|. .+..+|-.-++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555543 3555555555544443
No 336
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=44.14 E-value=60 Score=20.69 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=55.3
Q ss_pred HHHHHHHH-HHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----------
Q 030489 29 TYNTIICG-YCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK--A---------- 95 (176)
Q Consensus 29 ~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~---------- 95 (176)
-|..|+.. +.-.|.+.+++-++...- ..+..-|- --+|-+..++.+|...++.+....++ |
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk--~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYE--SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHH--HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 34433332 345677777765553211 11111222 34677889999999999999854332 1
Q ss_pred ----c-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 96 ----N-VVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 96 ----~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
| ...|+.+...+...|+.++|+..+..
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 2 24567778888999999999998864
No 337
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.10 E-value=1.1e+02 Score=23.62 Aligned_cols=80 Identities=10% Similarity=0.012 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSK 87 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 87 (176)
..++...+....... .+.....-.+....+.|+++.|...|..|..... .......-+..++...|+.++|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334455555444332 2333333444445577999999999988875321 1344455566778888999999999888
Q ss_pred HHh
Q 030489 88 MLE 90 (176)
Q Consensus 88 ~~~ 90 (176)
+.+
T Consensus 345 ~a~ 347 (618)
T 1qsa_A 345 LMQ 347 (618)
T ss_dssp HHT
T ss_pred Hhc
Confidence 754
No 338
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=43.76 E-value=40 Score=18.59 Aligned_cols=48 Identities=8% Similarity=-0.012 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 030489 74 KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGY-----FKSQNMKSAFDVYEEM 123 (176)
Q Consensus 74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m 123 (176)
..|++-+|.+++++.-.....+....|..||... .+.|+. |..++.+-
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a 65 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA 65 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence 4477777888887777665444455566665433 234555 66666554
No 339
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=43.67 E-value=76 Score=21.70 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=27.8
Q ss_pred HHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 030489 50 FEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 50 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 93 (176)
++.+.+.|+.|...++.-++..+.+.=..+.+..+|+.+...|.
T Consensus 177 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 177 HSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 34444556666666666666666666566777777777666654
No 340
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.63 E-value=54 Score=20.04 Aligned_cols=143 Identities=10% Similarity=-0.029 Sum_probs=63.8
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhH--HHHHHHHHhcCCHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF--TILIDAFCKEGRMDD 80 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~ 80 (176)
+..|+.+....++..-...--..+..-++.|.. .++.|+.+ +++.+.+.|..++.... .+.+...+..|+.+-
T Consensus 13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 345666665555532210000112233334433 44566654 44445555655543221 233445556777776
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCCC--------------CC-hHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENN-ISPNIA--------------GR-PTEAMQLYD 144 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~--------------~~-~~~a~~~~~ 144 (176)
+..+++.-...-...+....+.+ ...++.|+.+-+..+++. | ..++.. +. ...-.++.+
T Consensus 88 ~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 88 LAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLED----GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHH----CCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHc----CCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 66555432111011122222233 334566777655544443 3 222222 22 222255666
Q ss_pred HHHHCCCCCcH
Q 030489 145 SMLRNGIMPDG 155 (176)
Q Consensus 145 ~m~~~g~~p~~ 155 (176)
.+.+.|..|+.
T Consensus 163 ~Ll~~ga~~~~ 173 (201)
T 3hra_A 163 LLMENGADQSI 173 (201)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHCCCCCCc
Confidence 77777766653
No 341
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=43.34 E-value=67 Score=21.62 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCC------hhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHH---H
Q 030489 10 AALKLFGQLTDRGLEPDIITYNTIICGYCSLNR------LDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMD---D 80 (176)
Q Consensus 10 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~---~ 80 (176)
.|.+++..+.+ |.+++..+|..+++++..... +.+|.+.+..+. -..+.....+.+.+.. .+.+.+ .
T Consensus 94 ~A~r~L~~LLe-~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklk--v~~~~~~V~~~l~sLl-~Skd~~vK~a 169 (265)
T 3b2a_A 94 KALRALGYLVK-DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQ--PLEDSKLVRTYINELV-VSPDLYTKVA 169 (265)
T ss_dssp HHHHHHHHHHT-TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC--BSCCCHHHHHHHHHHH-TCSSHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCC--cccchHHHHHHHHHHH-hCCChhHHHH
Confidence 46666666665 468899999999988865332 445555555551 1233444455455444 444433 3
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHH---HHHHHhcCC---HHHHHHHHHHHHHCC
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCL---IDGYFKSQN---MKSAFDVYEEMCENN 127 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~---~~~a~~~~~~m~~~~ 127 (176)
|...+-++....- |...++.+ +.-+.+..+ .+.|+..++.+....
T Consensus 170 gl~~L~eia~~S~--D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 170 GFCLFLNMLNSSA--DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHGGGCS--SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcccC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 5566666654322 11122221 122233334 356666666665543
No 342
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=42.37 E-value=37 Score=21.94 Aligned_cols=82 Identities=4% Similarity=-0.138 Sum_probs=44.6
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccH-------HHHHHHHHHHHhC---CChhHHHHHHHHHHhCCCC----------cCh
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDI-------ITYNTIICGYCSL---NRLDEAVQLFEKLTCVQLK----------PNS 62 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~----------~~~ 62 (176)
++.|+.+....+++.+.+.|..++. .-++.|..+. .. |+.+-+..+++.-...+.. .|.
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 88 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFY 88 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTT
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCcccchhhhcccccccccc
Confidence 4678888777788877777654443 3344555444 44 7777666666554332211 012
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFS 86 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~ 86 (176)
.-.+ .+...+..|+.+-+..+++
T Consensus 89 ~g~t-~L~~A~~~g~~~~v~~Ll~ 111 (256)
T 2etb_A 89 QGHS-ALHIAIEKRSLQCVKLLVE 111 (256)
T ss_dssp TTCC-HHHHHHHTTCHHHHHHHHH
T ss_pred cCCC-HHHHHHHcCCHHHHHHHHH
Confidence 2233 3444556677665554443
No 343
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=42.28 E-value=24 Score=19.05 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhh-CCCCccHHHHHHHHHHHHh
Q 030489 9 DAALKLFGQLTD-RGLEPDIITYNTIICGYCS 39 (176)
Q Consensus 9 ~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~ 39 (176)
++|...|..|+. .++. ...+|...+.....
T Consensus 17 eea~~~Fk~LL~e~~V~-p~~tWe~~~~~i~~ 47 (82)
T 2dod_A 17 EARMKQFKDMLLERGVS-AFSTWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHTTCC-SSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCcC-CCCCHHHHHHHHcc
Confidence 445555555543 2322 33444444444433
No 344
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=41.91 E-value=68 Score=20.69 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 030489 98 VTYSCLIDGYF 108 (176)
Q Consensus 98 ~~~~~l~~~~~ 108 (176)
..|...|+.|.
T Consensus 160 ~~y~~WI~~y~ 170 (221)
T 3ibx_A 160 AFYGHWIKGYS 170 (221)
T ss_dssp TTTHHHHHHTT
T ss_pred ChHHHHHHHhC
Confidence 44555555554
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.88 E-value=34 Score=23.92 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC
Q 030489 29 TYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKE-GRMDDATMMFSKMLEKGPK 94 (176)
Q Consensus 29 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~ 94 (176)
-...++.=|...|+.++|...++++...... ...+...+..+.-+. ...+.+..++..+.+.++-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 3567888888899999998888887532211 112222222333221 1234455666666655443
No 346
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=41.70 E-value=22 Score=18.54 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.0
Q ss_pred hHHHHHHHHHh
Q 030489 9 DAALKLFGQLT 19 (176)
Q Consensus 9 ~~a~~~~~~~~ 19 (176)
++|.+.|..|+
T Consensus 15 eea~~~F~~LL 25 (71)
T 1uzc_A 15 EEAKQAFKELL 25 (71)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 347
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.67 E-value=58 Score=20.45 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=7.9
Q ss_pred HHHHHHhCCChhHHH
Q 030489 33 IICGYCSLNRLDEAV 47 (176)
Q Consensus 33 ll~~~~~~~~~~~a~ 47 (176)
.+...+..|+.+-+.
T Consensus 45 ~L~~A~~~~~~~~v~ 59 (240)
T 3eu9_A 45 LLHWAAINNRIDLVK 59 (240)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHH
Confidence 444555666655443
No 348
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=40.96 E-value=29 Score=20.33 Aligned_cols=106 Identities=9% Similarity=0.007 Sum_probs=44.6
Q ss_pred hhhCChhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChh---hHHHHHHHHHhcCCH
Q 030489 3 IKECHLDAALKLFGQLTDRGL-EPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSI---TFTILIDAFCKEGRM 78 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~ 78 (176)
++.|+.+.+..+++. ....+ ..+..-++ .+.. +..|+.+-+. .+.+.|..++.. -.+ .+...+..|+.
T Consensus 10 ~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t-~L~~-~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~ 81 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR-ELVHPDALNRFGKT-ALQV-MMFGSTAIAL----ELLKQGASPNVQDTSGTS-PVHDAARTGFL 81 (156)
T ss_dssp HHHTCHHHHHHHHHT-TCCCTTCCCTTSCC-HHHH-SCTTCHHHHH----HHHHTTCCTTCCCTTSCC-HHHHHHHTTCH
T ss_pred HHhCCHHHHHHHHHh-hCcCccccCCCCCc-HHHH-HHcCCHHHHH----HHHHCCCCCCCcCCCCCC-HHHHHHHcCcH
Confidence 345666666666655 21111 11222222 3333 5566655433 333445444322 222 33334455665
Q ss_pred HHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKAN---VVTYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
+-+..+ .+.|..++ ...++.|.. .++.|+.+-+.-+++
T Consensus 82 ~~v~~L----l~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 82 DTLKVL----VEHGADVNVPDGTGALPIHL-AVQEGHTAVVSFLAA 122 (156)
T ss_dssp HHHHHH----HHTTCCSCCCCTTSCCHHHH-HHHHTCHHHHHHHHT
T ss_pred HHHHHH----HHcCCCCCCcCCCCCcHHHH-HHHhChHHHHHHHHh
Confidence 544333 33443332 222333333 345566655444443
No 349
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=40.16 E-value=29 Score=19.71 Aligned_cols=43 Identities=16% Similarity=0.031 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEE 122 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 122 (176)
.+++.+++..-.+.. ....|...|+.++.+.+.-+-|..+...
T Consensus 57 ~eq~~~mL~~W~~r~--G~~AT~~~L~~AL~~~~~~dvae~l~~~ 99 (110)
T 1wxp_A 57 KMRAKQLLVAWQDQE--GVHATPENLINALNKSGLSDLAESLTND 99 (110)
T ss_dssp HHHHHHHHHHHHHHH--GGGCCHHHHHHHHHHTTCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 345555554443221 1234566666666666666666555443
No 350
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=40.15 E-value=36 Score=16.97 Aligned_cols=18 Identities=0% Similarity=0.123 Sum_probs=10.3
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 030489 110 SQNMKSAFDVYEEMCENN 127 (176)
Q Consensus 110 ~g~~~~a~~~~~~m~~~~ 127 (176)
.-|++.|...|.++...|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~ 50 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKG 50 (59)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 345666666666665443
No 351
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=40.00 E-value=75 Score=23.43 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--------HHHHHHH-HHHHHhcCCHHHHHHHHHHHHH
Q 030489 64 TFTILIDAFCKEGRMDDATMMFSKMLEKGPKAN--------VVTYSCL-IDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 64 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
..+.|++.|.+.++...+..++..+...+..|+ ..+|... ...+...+++.+|.+.+.+...
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 357788999999999999999999987765332 2344443 4566778999999988887654
No 352
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.20 E-value=71 Score=20.10 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=10.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC
Q 030489 70 DAFCKEGRMDDATMMFSKMLEKG 92 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~~~ 92 (176)
...+..|+.+-+..+++.+.+.|
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHhcC
Confidence 33344455554444444444444
No 353
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=38.75 E-value=71 Score=20.27 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTC 55 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 55 (176)
.....++.+.++.. .-+-.-.-.+|.++.+.|++++|.++..++..
T Consensus 15 l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 15 TALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555543 11222333678888888888888888877654
No 354
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.29 E-value=1.3e+02 Score=23.51 Aligned_cols=16 Identities=6% Similarity=0.223 Sum_probs=9.8
Q ss_pred HhcCCHHHHHHHHHHH
Q 030489 108 FKSQNMKSAFDVYEEM 123 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m 123 (176)
...|+|+.|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5566777766655553
No 355
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.20 E-value=70 Score=19.47 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 030489 45 EAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPK 94 (176)
Q Consensus 45 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 94 (176)
.+..++..+.+.|+.-|...-...+....+.| .....+-.++.+.|+.
T Consensus 48 ~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 48 DYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 34445555555555533333334444444333 1234455555556554
No 356
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=36.08 E-value=15 Score=21.42 Aligned_cols=50 Identities=8% Similarity=0.202 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHHhCCCC-cChhhHHHHHHHHH---hcCCHHHHHHHHHHHHhcCC
Q 030489 41 NRLDEAVQLFEKLTCVQLK-PNSITFTILIDAFC---KEGRMDDATMMFSKMLEKGP 93 (176)
Q Consensus 41 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~ 93 (176)
..+++|.+.+..|++.-+. -.+..||..+..+. ..++. ..+|..+++.++
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~l 94 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 3577888888887765332 26677888776653 33333 455666665544
No 357
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=34.94 E-value=1.9e+02 Score=23.83 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=16.9
Q ss_pred ChHHHHHHHHHHHHC-CCCCcHHHHHHHHHHhhcccC
Q 030489 135 RPTEAMQLYDSMLRN-GIMPDGLLLSTLADYNLQSSG 170 (176)
Q Consensus 135 ~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 170 (176)
+....++.+...... .-.|+......+..+....|+
T Consensus 685 rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 685 QVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp THHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 344444444444432 223444455555566655554
No 358
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.31 E-value=73 Score=18.50 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=18.8
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 030489 85 FSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCE 125 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 125 (176)
|+.+.+..+.|++..--.-+......++|+.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333434433333322333344455566666666655543
No 359
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.00 E-value=1.2e+02 Score=20.94 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCcH
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR--MDDATMMFSKMLEKGPKANV 97 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 97 (176)
...++.-|...|+.++|.+.++++....+. ...+...+..+.-+.++ .+.+.+++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 467888899999999999999998732211 22334444555555433 45677888888877665333
No 360
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=32.98 E-value=1.2e+02 Score=21.02 Aligned_cols=48 Identities=0% Similarity=0.042 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 030489 83 MMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISP 130 (176)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 130 (176)
+++..+.+.|+.|...++.-++..+.+.=.++.+..+|+.+...|...
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~ 277 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF 277 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh
Confidence 466777788898888888888888888888999999999988776543
No 361
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.91 E-value=92 Score=19.52 Aligned_cols=15 Identities=13% Similarity=-0.070 Sum_probs=9.0
Q ss_pred hhhCChhHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQ 17 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~ 17 (176)
++.|+++....+++.
T Consensus 14 ~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 14 AYSGKLDELKERILA 28 (231)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHh
Confidence 455666666666654
No 362
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=31.71 E-value=57 Score=22.69 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=35.2
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 030489 13 KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQ 57 (176)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 57 (176)
++++.+.+.|+.|...++.=++..+.+.=.++.+..+|+.+...|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 355666677888888887777877877778889999999888766
No 363
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=31.61 E-value=1e+02 Score=19.57 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 030489 67 ILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEM 123 (176)
Q Consensus 67 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 123 (176)
.+|.++...|++++|.++..++...- ..... ..+.+++.-|--++...
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~~~--------q~~~~-~~~i~~P~la~lLl~K~ 84 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVIDA--------KHESK-LSNLKTPHLAFDFLTFN 84 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHHH-HHTTTCHHHHHHHHHGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH--------HHHHH-HHhCCCHHHHHHHHHHH
Confidence 45777888888888888887776431 11111 45566666665555544
No 364
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=31.26 E-value=83 Score=18.55 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHHH
Q 030489 72 FCKEGRMDDATMMFSKM 88 (176)
Q Consensus 72 ~~~~~~~~~a~~~~~~~ 88 (176)
|...++.+++.++++.+
T Consensus 50 yf~~~n~~~m~~~L~pL 66 (126)
T 2npu_A 50 YFGERNVKGMFEVLEPL 66 (126)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HhcccCHHHHHHHHHHH
Confidence 34455666666555444
No 365
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.25 E-value=1.3e+02 Score=20.67 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=10.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 030489 70 DAFCKEGRMDDATMMFSKMLE 90 (176)
Q Consensus 70 ~~~~~~~~~~~a~~~~~~~~~ 90 (176)
...+..|+.+-+..+++....
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKE 109 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhccc
Confidence 333445555555555554333
No 366
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.20 E-value=59 Score=16.80 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=11.4
Q ss_pred CChHHHHHHHHHHHHCCC
Q 030489 134 GRPTEAMQLYDSMLRNGI 151 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~ 151 (176)
.+.++|.+...++...|+
T Consensus 54 ~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 54 SSKDNADTLAARAKNAGF 71 (79)
T ss_dssp SSHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 455666666666665555
No 367
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=31.17 E-value=59 Score=17.01 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=11.0
Q ss_pred CChHHHHHHHHHHHHCCCC
Q 030489 134 GRPTEAMQLYDSMLRNGIM 152 (176)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~ 152 (176)
.+.++|.+...++...|+.
T Consensus 54 ~s~~~A~~~~~~L~~~g~~ 72 (81)
T 1uta_A 54 KGKENADSTLNRLKMAGHT 72 (81)
T ss_dssp BTTTHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4456666666666655543
No 368
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=30.80 E-value=1.2e+02 Score=20.06 Aligned_cols=11 Identities=9% Similarity=-0.106 Sum_probs=5.5
Q ss_pred HHhCCChhHHH
Q 030489 37 YCSLNRLDEAV 47 (176)
Q Consensus 37 ~~~~~~~~~a~ 47 (176)
.+..|+.+-+.
T Consensus 118 A~~~g~~~~v~ 128 (276)
T 4hbd_A 118 SVSHANFPVVQ 128 (276)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHCCCHHHHH
Confidence 34566655443
No 369
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=30.17 E-value=70 Score=17.29 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 030489 46 AVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSA 116 (176)
Q Consensus 46 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 116 (176)
...++..+.+.|+- +..-+..+-. .....++|.++++.+... ...+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCHHHHH
Confidence 34566666666544 4444433333 356778888888887644 456788888888777664443
No 370
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.03 E-value=1.6e+02 Score=21.48 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=11.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 030489 110 SQNMKSAFDVYEEMCENNIS 129 (176)
Q Consensus 110 ~g~~~~a~~~~~~m~~~~~~ 129 (176)
..+.+.|+.++.+|.+.|..
T Consensus 268 gsd~daAl~~la~ml~~Ged 287 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGD 287 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 35666666666666665543
No 371
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=30.02 E-value=53 Score=21.90 Aligned_cols=39 Identities=21% Similarity=0.139 Sum_probs=25.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 030489 73 CKEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (176)
Q Consensus 73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (176)
...++.+.+.+.+++....|..|.......++.+..+.|
T Consensus 47 l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG 85 (258)
T 2i2x_B 47 IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVI 85 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345777888888888887776665555455555555444
No 372
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=30.02 E-value=1.5e+02 Score=20.94 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=39.2
Q ss_pred HHhCCCCcChhhHHHHHHHHHhcCCHH-HHHHHHHHHH----hcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 030489 53 LTCVQLKPNSITFTILIDAFCKEGRMD-DATMMFSKML----EKG--PKANVVTYSCLIDGYFKSQNMKSAFDVY 120 (176)
Q Consensus 53 m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 120 (176)
+.+.++++|......|+..+.....-+ .=.++...++ +.| ..-|......+...|.+.+++.+|..-|
T Consensus 85 y~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 85 FRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 344566777777777777766554311 1122333332 222 2335566667778888888887776555
No 373
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.59 E-value=1.8e+02 Score=21.95 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCcH--HHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC-CChH
Q 030489 63 ITFTILIDAFCKEGRMDDATMMFSKMLEKGP-KANV--VTYS-CLIDGYFKSQNMKSAFDVYEEMCENNISPNIA-GRPT 137 (176)
Q Consensus 63 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ 137 (176)
..+|.+++.|...+.+++|..+.....--.. .++. ..|. .+...+.-.++|.+|.+.+......-...... |...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~ 311 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQ 311 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHH
Confidence 4577888999999999999999988751100 1111 2222 23456677899999999998876542222222 4445
Q ss_pred HHHHHH--HHHHHCCCCCcHHH------------HHHHHHHhhcccCc
Q 030489 138 EAMQLY--DSMLRNGIMPDGLL------------LSTLADYNLQSSGS 171 (176)
Q Consensus 138 ~a~~~~--~~m~~~g~~p~~~~------------~~~l~~~~~~~g~~ 171 (176)
.+.+++ -+|. .|-.|+... |..|..++ +.|++
T Consensus 312 ~a~K~lI~V~LL-lG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL 357 (523)
T 4b4t_S 312 QSNKLHCCIQLL-MGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDL 357 (523)
T ss_dssp HHHHHHHHHHHH-HTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCH
T ss_pred HHHHHHHhHHhh-cCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCH
Confidence 554433 3333 355565443 55555554 55554
No 374
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=28.92 E-value=90 Score=18.19 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhC-CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 44 DEAVQLFEKLTCV-QLKPNSITFTILIDAFCKEGRMDDATMMFSKML 89 (176)
Q Consensus 44 ~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (176)
+.+.+++....+. | ...|...|+.++.+.|+-+-|..+=+.+.
T Consensus 47 eq~~~mL~~W~~r~G---~~ATv~~L~~AL~~i~~~diAe~Ie~~l~ 90 (122)
T 3ezq_B 47 ERVRESLRIWKNTEK---ENATVAHLVGALRSCQMNLVADLVQEVQQ 90 (122)
T ss_dssp HHHHHHHHHHHHHCT---TTCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC---CCchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555666554433 3 34567778888888887777766655544
No 375
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.33 E-value=40 Score=23.56 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=30.9
Q ss_pred chhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCC
Q 030489 2 LIKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN--RLDEAVQLFEKLTCVQLK 59 (176)
Q Consensus 2 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~ 59 (176)
|...|+.++|...++++..-.. -......++......+ ..+.+..++..+.+.|+-
T Consensus 21 y~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 21 YLHLNDMKEAVQCVQELASPSL--LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4567899999999888752211 1222223333333332 244566667777766554
No 376
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.16 E-value=99 Score=19.42 Aligned_cols=46 Identities=9% Similarity=-0.022 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHh
Q 030489 28 ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCK 74 (176)
Q Consensus 28 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 74 (176)
..++.++..++...-.+.++.++.+....|. .+..+|---++.+++
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4456666666666666666666666666653 355555555555444
No 377
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.96 E-value=1.6e+02 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 030489 31 NTIICGYCSLNRLDEAVQLFEKLT 54 (176)
Q Consensus 31 ~~ll~~~~~~~~~~~a~~~~~~m~ 54 (176)
..++.=|...|+.++|.+.++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555666666666665554
No 378
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.82 E-value=1.1e+02 Score=18.84 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCC--HHHHHHHHHHHHh
Q 030489 30 YNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGR--MDDATMMFSKMLE 90 (176)
Q Consensus 30 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~ 90 (176)
...++.-|...++.++|...++++...... ......++......++ -+.+-+++..+..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~--~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGGG--GHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 456788888899999999999987643221 1222233332222232 3345666677643
No 379
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.53 E-value=53 Score=21.86 Aligned_cols=14 Identities=0% Similarity=-0.187 Sum_probs=6.6
Q ss_pred HHHHHHhcCCHHHH
Q 030489 103 LIDGYFKSQNMKSA 116 (176)
Q Consensus 103 l~~~~~~~g~~~~a 116 (176)
.+...+..|+.+-+
T Consensus 132 ~L~~A~~~~~~~~v 145 (285)
T 3kea_A 132 SFYHAVMLNDVSIV 145 (285)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 33444455655443
No 380
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=26.68 E-value=1.2e+02 Score=23.35 Aligned_cols=90 Identities=9% Similarity=0.093 Sum_probs=49.5
Q ss_pred HhhCCCC-ccHHHHHHHHHHHHhCCChhHHHHHHHHH-----H-hCCCC---------------cC-hhhHHHHHHHHHh
Q 030489 18 LTDRGLE-PDIITYNTIICGYCSLNRLDEAVQLFEKL-----T-CVQLK---------------PN-SITFTILIDAFCK 74 (176)
Q Consensus 18 ~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m-----~-~~~~~---------------~~-~~~~~~ll~~~~~ 74 (176)
+.+..++ -|..+|-..+.-|...|......++++.- . ..|.. ++ ...+-.++...++
T Consensus 18 l~e~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqDe~n~~l~~~igWdLv~~lv~~l~~~~~~~~~~~~s~~iL~~la~ 97 (596)
T 4f52_E 18 LEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNKVIIKNMGWNLVGPVVRCLLCKDKEDSKRKVYFLIFDLLVK 97 (596)
T ss_dssp CC---------CHHHHHHHHHHSSSCSHHHHHHHTTCTTHHHHHHTGGGGHHHHHHHHHTSCCCSSSTHHHHHHHHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHcCcccHHHHHHHHhCcchhHHHHHcCcccHHHHHHHHhhccccccchhHHHHHHHHHHH
Confidence 4444554 37789999999999999999998888652 1 11211 11 1345566777888
Q ss_pred cCCHHHHHHHH-HHHHhcCCCCcHHHHHHHHHHH
Q 030489 75 EGRMDDATMMF-SKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 75 ~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
.|++.+.+--+ +.+......-....|+.++.++
T Consensus 98 lcnPrEvil~llE~le~~~~~~~~~~f~~LL~~L 131 (596)
T 4f52_E 98 LCNPKELLLGLLELIEEPSGKQISQSILLLLQPL 131 (596)
T ss_dssp HSCGGGHHHHHGGGGTSCCGGGHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence 88887764333 3332222111234566666655
No 381
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.43 E-value=1.7e+02 Score=20.54 Aligned_cols=48 Identities=17% Similarity=0.073 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCCCChHHHHHHHHHHHHC
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIAGRPTEAMQLYDSMLRN 149 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~a~~~~~~m~~~ 149 (176)
+...-|....|.+++..|-.+-+++.+.+..+. ..++|.+++..-.+.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---RAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHhcC
Confidence 455567777888888888888888887654333 346666666665543
No 382
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=26.41 E-value=32 Score=17.04 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=13.0
Q ss_pred CChhHHHHHHHHHhhCCCCcc
Q 030489 6 CHLDAALKLFGQLTDRGLEPD 26 (176)
Q Consensus 6 ~~~~~a~~~~~~~~~~~~~~~ 26 (176)
-+++.|...|... +..+||+
T Consensus 33 Wd~~~A~~~F~~~-~~~IP~e 52 (57)
T 2jp7_A 33 WNYEVAIKGFQSS-MNGIPRE 52 (57)
T ss_dssp TCSHHHHHHHHHS-TTTSCHH
T ss_pred CCHHHHHHHHHHH-HcCCCHH
Confidence 4778888888886 3335543
No 383
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=25.34 E-value=1.9e+02 Score=20.75 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhhCC----CCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHHHhcCCHHHHHH
Q 030489 8 LDAALKLFGQLTDRG----LEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAFCKEGRMDDATM 83 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 83 (176)
.+.|.+.|+.....+ ++|+... .+...-.+ ..++-..+++..... .+..--..++.+++...+.....+
T Consensus 216 ~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~ll~aL~~s~d~~ll~~ 288 (419)
T 3rjo_A 216 VQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQIEFALCRTQNKEKLQW 288 (419)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCCCHHHHHH
Confidence 456667776665432 4444321 11111111 133333444444443 244445667777777777777777
Q ss_pred HHHHHHhcC
Q 030489 84 MFSKMLEKG 92 (176)
Q Consensus 84 ~~~~~~~~~ 92 (176)
+++......
T Consensus 289 ~L~~~l~~~ 297 (419)
T 3rjo_A 289 LLDESFKGD 297 (419)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHhCCC
Confidence 777666544
No 384
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.30 E-value=1.2e+02 Score=18.60 Aligned_cols=116 Identities=11% Similarity=0.157 Sum_probs=70.7
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHh-cC
Q 030489 37 YCSLNRLDEAVQLFEKLTCVQLKP-NSITFTILIDAFCKEGRMDDATMMFSKMLEKGPKANVV---TYSCLIDGYFK-SQ 111 (176)
Q Consensus 37 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~g 111 (176)
.++.|+++....++.. ++.. +...-.+.+...+..|..+.-.++.+.+.+.|..++.. -++.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 4577888887666643 3221 10111245566667777777677888888888776653 34445444333 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC---CC-------------hHHHHHHHHHHHH-CCCCCcHH
Q 030489 112 NMKSAFDVYEEMCENNISPNIA---GR-------------PTEAMQLYDSMLR-NGIMPDGL 156 (176)
Q Consensus 112 ~~~~a~~~~~~m~~~~~~~~~~---~~-------------~~~a~~~~~~m~~-~g~~p~~~ 156 (176)
+.....++.+.+.+.|..++.. |. ...-..+++.+.+ .|..++..
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~ 150 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc
Confidence 4555677888888899888888 22 0233446666666 77777664
No 385
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=25.01 E-value=42 Score=20.55 Aligned_cols=54 Identities=7% Similarity=0.110 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 77 RMDDATMMFSKMLEKGPK-ANVVTYSCLIDGYF---KSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
.+++|.+.+..|++.-+. -.+..||..+..+. ..++. ..+|..+...++.+...
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lgLI~~ 130 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITLITK 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCSSCSS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcccccH
Confidence 577888888887754332 15567888776664 33443 55677777666655444
No 386
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=24.97 E-value=67 Score=15.78 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (176)
.++...+.++-.+.|-.+....++.....+...|
T Consensus 12 ~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 12 VYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp HHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 4444455555555555444445555554444443
No 387
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.92 E-value=1.6e+02 Score=19.84 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCCcChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 030489 47 VQLFEKLTCVQLKPNSITF--TILIDAFCKEGRMDDATMMFSKMLEKGPKA---NVVTYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 47 ~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
..+.+.+.+.|..++.... .+.+...+..|..+.+..+++. .+..+ |..-++.|..+ ++.|+.+- .+
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~i----v~ 290 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKKI----AE 290 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHHH----HH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHHH----HH
Confidence 3444555666665543221 2344555677777766555432 22222 22333444444 45666654 44
Q ss_pred HHHHCCCCCCCC---------CChHHHHHHHHHHHHCCCCCcH
Q 030489 122 EMCENNISPNIA---------GRPTEAMQLYDSMLRNGIMPDG 155 (176)
Q Consensus 122 ~m~~~~~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~ 155 (176)
.+.+.|..++.. |+. ++.+-+.+.|-.||.
T Consensus 291 ~Ll~~GAd~n~~~~L~~A~~~~~~----~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 291 LLCKRGASTDCGDLVMTARRNYDH----SLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHTTSCSSTTCCHHHHHHHTTCH----HHHHHHHHTTCCC--
T ss_pred HHHHCCCCCCCCCHHHHHHHcCCH----HHHHHHHHCcCCCCC
Confidence 445667666554 333 355666777877764
No 388
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=24.67 E-value=96 Score=17.10 Aligned_cols=28 Identities=11% Similarity=-0.100 Sum_probs=19.5
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHhh
Q 030489 139 AMQLYDSMLRNGIMPDGLLLSTLADYNL 166 (176)
Q Consensus 139 a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 166 (176)
|.+.|.++.+.|..|+...+.++..+..
T Consensus 36 a~~ay~rLk~~~~~~~~~~L~aL~gAi~ 63 (93)
T 3mab_A 36 SKEAFLRIWENDSSVCMSELYALEGAVQ 63 (93)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 4556777777777788777777766653
No 389
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=24.55 E-value=1.6e+02 Score=19.52 Aligned_cols=21 Identities=5% Similarity=-0.265 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHhC-CChhHH
Q 030489 26 DIITYNTIICGYCSL-NRLDEA 46 (176)
Q Consensus 26 ~~~~~~~ll~~~~~~-~~~~~a 46 (176)
....|+..+...+.. |++.++
T Consensus 128 ~~~aYt~~ll~~a~~~g~~~~~ 149 (248)
T 3no6_A 128 SGDHYIKHMYFNAFARENAAFT 149 (248)
T ss_dssp HHHHHHHHHHHHHHHCSSTHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHH
Confidence 344555555555554 555443
No 390
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.55 E-value=2.1e+02 Score=20.92 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhh--------CCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-------CcCh-----------
Q 030489 9 DAALKLFGQLTD--------RGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQL-------KPNS----------- 62 (176)
Q Consensus 9 ~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~----------- 62 (176)
++...+++.... .++..+......+... -.|+..+++.+++.+..... ..+.
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Confidence 445555655543 2344566777777665 46888888888877653211 1111
Q ss_pred -------hhHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 030489 63 -------ITFTILIDAFC---KEGRMDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQ 111 (176)
Q Consensus 63 -------~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (176)
..+..+++++. +.++.+.|..++..|.+.|.+|....-..+..+.-..|
T Consensus 246 ~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 246 ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 12233555543 45789999999999999887765544444444443333
No 391
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=24.16 E-value=1.4e+02 Score=20.11 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=38.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCcChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHH
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF--TILIDAFCKEGRMDDATMMFSKMLEKGPKANV---VTYSCLIDGY 107 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 107 (176)
.+...+..|+.+-+ +.+.+.|..++.... .+.+...+..|+.+-+.. +.+.|..++. .-++.|.. .
T Consensus 61 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~-A 131 (351)
T 3utm_A 61 PLHLAAGYNRVRIV----QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL----LLKHGACVNAMDLWQFTPLHE-A 131 (351)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCCHHHH-H
T ss_pred HHHHHHHcCCHHHH----HHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHH----HHHCCCCCCCCCCCCCCHHHH-H
Confidence 34444456665443 344445544432211 123444455666554433 3444443332 22233333 3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCC
Q 030489 108 FKSQNMKSAFDVYEEMCENNISPNI 132 (176)
Q Consensus 108 ~~~g~~~~a~~~~~~m~~~~~~~~~ 132 (176)
+..|+.+-+. .+.+.|..++.
T Consensus 132 ~~~~~~~~v~----~Ll~~g~~~~~ 152 (351)
T 3utm_A 132 ASKNRVEVCS----LLLSHGADPTL 152 (351)
T ss_dssp HHTTCHHHHH----HHHHTTCCTTC
T ss_pred HHcCCHHHHH----HHHHcCCCCcc
Confidence 4566665443 33444555544
No 392
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=24.02 E-value=71 Score=15.38 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=5.5
Q ss_pred hHHHHHHHHHhhCC
Q 030489 9 DAALKLFGQLTDRG 22 (176)
Q Consensus 9 ~~a~~~~~~~~~~~ 22 (176)
..|.++++.+...|
T Consensus 10 ~RaiELle~lq~sg 23 (53)
T 1zl8_A 10 QRILELMEHVQKTG 23 (53)
T ss_dssp HHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHcC
Confidence 33444444443333
No 393
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.97 E-value=1.1e+02 Score=19.10 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=8.4
Q ss_pred hhhCChhHHHHHHHH
Q 030489 3 IKECHLDAALKLFGQ 17 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~ 17 (176)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 10 CMENEFFKVQELLHS 24 (228)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 345666665555544
No 394
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.85 E-value=1.4e+02 Score=18.71 Aligned_cols=119 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccH---HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhH--HHHHHHHHhcCC
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDI---ITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITF--TILIDAFCKEGR 77 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~ 77 (176)
++.|+.+.+..+++.+.+.|..++. .-+ +.+...+..|+.+ +++.+.+.|..++.... .+.+...+..|+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCC-CHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 4567777777777776666655443 223 3444455666654 34455556655543221 234455566777
Q ss_pred HHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 030489 78 MDDATMMFSKMLEKGPKA---NVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPN 131 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 131 (176)
.+-+..+++.....+..+ +...++.+.. .+..|+.+-+ +.+.+.|..++
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~~----~~Ll~~g~~~~ 143 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQETV----QLLLERGADID 143 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCHHHH----HHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCHHHH----HHHHHcCCCcc
Confidence 766655555433211122 2233333333 3456665544 44444555544
No 395
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.70 E-value=92 Score=16.56 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 030489 101 SCLIDGYFKSQNMKSAFDVYEEMC 124 (176)
Q Consensus 101 ~~l~~~~~~~g~~~~a~~~~~~m~ 124 (176)
..+.+-|+..|+++.|..+|+...
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHH
Confidence 345666777888888888887653
No 396
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=23.70 E-value=98 Score=16.85 Aligned_cols=29 Identities=10% Similarity=0.263 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 030489 8 LDAALKLFGQLTDRGLEPDIITYNTIICGY 37 (176)
Q Consensus 8 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 37 (176)
++.|+.+++.++.+ +.-++..|..++..+
T Consensus 10 ~~~A~~YvnkVK~r-F~~~p~~Y~~FL~IL 38 (89)
T 1g1e_B 10 FNHAINYVNKIKNR-FQGQPDIYKAFLEIL 38 (89)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HccChHHHHHHHHHH
Confidence 45666666666654 222455555555444
No 397
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=23.69 E-value=1.2e+02 Score=17.97 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.6
Q ss_pred HHHHHH
Q 030489 46 AVQLFE 51 (176)
Q Consensus 46 a~~~~~ 51 (176)
+.++++
T Consensus 24 a~~~l~ 29 (156)
T 1w8i_A 24 SVAIVV 29 (156)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 398
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=23.65 E-value=1.4e+02 Score=18.58 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 030489 10 AALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLK 59 (176)
Q Consensus 10 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 59 (176)
.+..+++.+.+.|.--|...-...+....+.|.+. ...+-.++.+.|+.
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 34455555555554433333334444444333221 23334445555554
No 399
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=23.58 E-value=79 Score=15.72 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHh
Q 030489 43 LDEAVQLFEKLTC 55 (176)
Q Consensus 43 ~~~a~~~~~~m~~ 55 (176)
.++|..+-+.+..
T Consensus 22 H~EA~tIA~~L~~ 34 (61)
T 3ph0_C 22 HQEAASIADWLAQ 34 (61)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 400
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.56 E-value=1e+02 Score=17.36 Aligned_cols=40 Identities=3% Similarity=-0.010 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 030489 78 MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDV 119 (176)
Q Consensus 78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 119 (176)
.+++.+++..-.+... ...|...|+.++.+.|.-+-|..+
T Consensus 58 ~eq~~~mL~~W~~~~g--~~AT~~~L~~aL~~i~r~diae~l 97 (111)
T 2yqf_A 58 LEQSVALLNLWVIREG--QNANMENLYTALQSIDRGEIVNML 97 (111)
T ss_dssp HHHHHHHHHHHHHHHT--TSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhC--CCchHHHHHHHHHHcCcHHHHHHH
Confidence 3445555444332211 123566666666666666555443
No 401
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=23.33 E-value=1.2e+02 Score=17.84 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=50.5
Q ss_pred hhhCChhHHHHHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhh--HHHHHHHHHhcCCHHH
Q 030489 3 IKECHLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSIT--FTILIDAFCKEGRMDD 80 (176)
Q Consensus 3 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~ 80 (176)
++.|+.+....+++.-...--..+..-++.|.. .+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-
T Consensus 10 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 84 (172)
T 3v30_A 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIETVRFLL----EWGADPHILAKERESALSLASTGGYTDI 84 (172)
T ss_dssp HHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHH-HHHTTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHcCcccccCCCCCCCCHHHH-HHHcCCHHHHHHHH----HcCCCchhhcccCCCHHHHHHHCCCHHH
Confidence 345666555555433211000112233333333 44666655444333 4444443211 1223444556676654
Q ss_pred HHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCC
Q 030489 81 ATMMFSKMLEKGPKANV---VTYSCLIDGYFKSQNMKSAFDVYEEMCENNISPNIA 133 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 133 (176)
+.. +.+.|..++. .-.+.|.. .+..|+.+-+..+ .+.|..++..
T Consensus 85 v~~----Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~~L----l~~ga~~~~~ 131 (172)
T 3v30_A 85 VGL----LLERDVDINIYDWNGGTPLLY-AVRGNHVKCVEAL----LARGADLTTE 131 (172)
T ss_dssp HHH----HHTTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHH----HHTTCCTTCC
T ss_pred HHH----HHHcCCCCCCCCCCCCCHHHH-HHHcCCHHHHHHH----HHcCCCcccc
Confidence 443 3444544332 22333333 3456776654443 3455554443
No 402
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=22.65 E-value=2.2e+02 Score=20.42 Aligned_cols=67 Identities=4% Similarity=0.050 Sum_probs=48.1
Q ss_pred ChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 030489 61 NSITFTILIDAFCKEGR--MDDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYEEMCENNI 128 (176)
Q Consensus 61 ~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 128 (176)
+..||-.++.-.....+ .+++..+++.+.+-.. ++...=..|+-.+.|.-..++...+.+-|.+.+.
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~-~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~ 90 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNA-RPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAH 90 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCC
Confidence 44578888887766554 5788888888887654 3666666677777777788888888888877553
No 403
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=22.20 E-value=1.1e+02 Score=16.76 Aligned_cols=41 Identities=10% Similarity=-0.077 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 030489 79 DDATMMFSKMLEKGPKANVVTYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
+++.+++..-.+.. ....|...|+.++.+.|.-+-|..+-.
T Consensus 55 eq~~~mL~~W~~~~--g~~At~~~L~~AL~~~~~~~iae~i~~ 95 (99)
T 1fad_A 55 ERVRESLKVWKNAE--KKNASVAGLVKALRTCRLNLVADLVEE 95 (99)
T ss_dssp HHHHHHHHHHHHHH--GGGGSHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCCcHHHHHHHHHHCCcHHHHHHHHH
Confidence 44444444433221 123356666666666666665555443
No 404
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=21.93 E-value=1.1e+02 Score=16.83 Aligned_cols=29 Identities=10% Similarity=-0.087 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHh
Q 030489 137 TEAMQLYDSMLRNGIMPDGLLLSTLADYN 165 (176)
Q Consensus 137 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 165 (176)
..+.+.|.++.+.|..|+..++.++..+.
T Consensus 34 ~Ga~~ay~rL~~~~~~~c~~~L~aL~gAi 62 (93)
T 3bqs_A 34 VGSKEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 44667778888778888887777775554
No 405
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.91 E-value=2e+02 Score=19.78 Aligned_cols=75 Identities=9% Similarity=0.143 Sum_probs=49.7
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCcChhhHHHHHHHH----HhcCCHHHHHHHHHH
Q 030489 13 KLFGQLTDRGLEPDIITYNTIICGYCSLNRLDEAVQLFEKLTCVQLKPNSITFTILIDAF----CKEGRMDDATMMFSK 87 (176)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~ 87 (176)
++++.+.+.|+.|...++.=++..+...=.++.+..+|+.....|...-....-+++..+ .+..+.+...+.+..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 456677777888888888888888888778999999999998877542222222233221 233466666666655
No 406
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=21.59 E-value=1.9e+02 Score=19.35 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 030489 99 TYSCLIDGYFKSQNMKSAFDVYE 121 (176)
Q Consensus 99 ~~~~l~~~~~~~g~~~~a~~~~~ 121 (176)
.|.-++.++.+.+..+.++.+|+
T Consensus 155 ly~~li~gL~~~~~~~~~l~FF~ 177 (244)
T 3b5o_A 155 LIVKLVEWLHEGAIPKDLQYFFS 177 (244)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhHHHHHH
Confidence 44555555544444444444443
No 407
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.37 E-value=2.3e+02 Score=20.24 Aligned_cols=86 Identities=8% Similarity=0.079 Sum_probs=53.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCC----------------CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----c
Q 030489 33 IICGYCSLNRLDEAVQLFEKLTCVQ----------------LKPNSITFTILIDAFCKEGRMDDATMMFSKMLE-----K 91 (176)
Q Consensus 33 ll~~~~~~~~~~~a~~~~~~m~~~~----------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~ 91 (176)
++.......+.+++.+.++.+...- ..+-......+...|...|+.+.|..++++... .
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 4555667788899999998764321 011223344566778889999999999988763 1
Q ss_pred CCCCc--HHHHHHHHHHHHhcCCHHHHHH
Q 030489 92 GPKAN--VVTYSCLIDGYFKSQNMKSAFD 118 (176)
Q Consensus 92 ~~~~~--~~~~~~l~~~~~~~g~~~~a~~ 118 (176)
++.|. ...|......|...+++..+..
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 23332 2335555666666677665543
No 408
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.28 E-value=2.7e+02 Score=21.05 Aligned_cols=31 Identities=6% Similarity=0.077 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 030489 96 NVVTYSCLIDGYFKSQNMKSAFDVYEEMCEN 126 (176)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 126 (176)
+......|-.-|.+.|++-.|-+++..+...
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 4455677788889999999998888888766
No 409
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=20.75 E-value=1.3e+02 Score=19.85 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 030489 81 ATMMFSKMLEKGPKANVVTYSCLIDGY 107 (176)
Q Consensus 81 a~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (176)
|.++++.+.+. -+.+|..+...+
T Consensus 199 A~~m~~~l~~~----~P~~~~a~~~~~ 221 (232)
T 4gt9_A 199 ALAIARIFKEK----CPWTFEAFLKYA 221 (232)
T ss_dssp HHHHHHHHHHH----CHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----ChHHHHHHHhhC
Confidence 44444444443 345566665543
No 410
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=20.47 E-value=85 Score=21.24 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 030489 66 TILIDAFCKEGRMDDATMMFSKM 88 (176)
Q Consensus 66 ~~ll~~~~~~~~~~~a~~~~~~~ 88 (176)
|.|++-|...|++..|.++++.+
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rl 60 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKI 60 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCcHHHHHHHHHHC
Confidence 67888999999999999999864
No 411
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=20.16 E-value=1.9e+02 Score=18.74 Aligned_cols=10 Identities=20% Similarity=0.042 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 030489 99 TYSCLIDGYF 108 (176)
Q Consensus 99 ~~~~l~~~~~ 108 (176)
.|..-|+.|.
T Consensus 159 ~y~~WI~~y~ 168 (229)
T 4fn6_A 159 DTAKWFDFYS 168 (229)
T ss_dssp THHHHHHHHT
T ss_pred hHHHHHHHHh
Confidence 4455555554
No 412
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=20.04 E-value=1.1e+02 Score=16.25 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=21.8
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHHhCCC
Q 030489 11 ALKLFGQLTDRGLEPDIITYNTIICGYCSLNR 42 (176)
Q Consensus 11 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 42 (176)
+.++-+++...|+.|+..+...++..|...+.
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~ 36 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 36 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Confidence 45566666777777777777777777766554
Done!