Query 030494
Match_columns 176
No_of_seqs 108 out of 134
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 14:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04535 DUF588: Domain of unk 99.9 1.4E-27 3.1E-32 188.1 10.2 128 33-161 2-149 (149)
2 TIGR01569 A_tha_TIGR01569 plan 99.8 3.7E-21 7.9E-26 154.3 7.9 131 39-172 1-153 (154)
3 PF01284 MARVEL: Membrane-asso 98.8 3.9E-08 8.4E-13 74.2 10.4 129 37-168 5-144 (144)
4 KOG4016 Synaptic vesicle prote 72.7 17 0.00038 31.6 7.1 121 38-168 25-165 (233)
5 PF12304 BCLP: Beta-casein lik 50.2 97 0.0021 26.4 7.5 107 61-173 33-162 (188)
6 PF06016 Reovirus_L2: Reovirus 28.5 5.4 0.00012 42.1 -3.9 33 111-143 884-918 (1289)
7 KOG4788 Members of chemokine-l 27.7 3.3E+02 0.0072 22.0 9.9 34 40-75 40-73 (172)
8 PF15555 DUF4658: Domain of un 18.3 3.2E+02 0.0069 21.9 5.0 30 30-59 63-93 (129)
9 COG0833 LysP Amino acid transp 17.2 4.7E+02 0.01 25.7 6.9 57 36-94 370-426 (541)
10 PF14898 DUF4491: Domain of un 13.4 4E+02 0.0087 20.3 4.3 37 67-103 56-92 (94)
No 1
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.95 E-value=1.4e-27 Score=188.08 Aligned_cols=128 Identities=31% Similarity=0.481 Sum_probs=119.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCC------------CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030494 33 PGTPGGLVLRLLQFVFAAIAVSVMASTSD------------FHEATAFCYLVLALGLQSLWSLSLLVLDIYAILVRRSLR 100 (176)
Q Consensus 33 pGt~~gL~LR~~q~~fa~~Sl~vM~s~~~------------F~s~taF~YLva~~~Lq~lWS~~la~~d~yall~k~~l~ 100 (176)
+++..+++||++|++++++|+++|++|+| |+++++|+|+|++|++++.||+.|++.++|.+.+|+ .+
T Consensus 2 ~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~~ 80 (149)
T PF04535_consen 2 SLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-LR 80 (149)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 56778999999999999999999999988 999999999999999999999999999999999998 77
Q ss_pred CcceEEEEEEchhhHHHHhhhhhccchhhHHhhhccc------CCCCcCc--CcHHHHHHHHHHHHHHH
Q 030494 101 NDKVIRLFTVGDGITSTLTYAAACSSAGITVLISNDL------NRCGINH--CTRFETATAMAFISWFA 161 (176)
Q Consensus 101 ~~~~~~lf~vGD~V~a~L~~aAAsAsagitvL~~~d~------~~C~~~~--C~~~~~SiamAFlsw~~ 161 (176)
++...++++++||+++||+++|++|+++++.+.++|. +.|.... |+|+++|++++|++|++
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 7778888899999999999999999999999988884 3699775 99999999999999974
No 2
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=99.84 E-value=3.7e-21 Score=154.26 Aligned_cols=131 Identities=24% Similarity=0.354 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--------------CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcce
Q 030494 39 LVLRLLQFVFAAIAVSVMASTSD--------------FHEATAFCYLVLALGLQSLWSLSLLVLDIYAILVRRSLRNDKV 104 (176)
Q Consensus 39 L~LR~~q~~fa~~Sl~vM~s~~~--------------F~s~taF~YLva~~~Lq~lWS~~la~~d~yall~k~~l~~~~~ 104 (176)
+.||+..+.++++|.++|++|+| |+++.+|+|+|.++++.+.||+.++...+|.+.+++... .
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~---~ 77 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFF---K 77 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh---H
Confidence 57999999999999999999844 889999999999999999999999999999988777652 2
Q ss_pred EEEEEEchhhHHHHhhhhhccchhhHHhhhcccC------CCCcC--cCcHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 030494 105 IRLFTVGDGITSTLTYAAACSSAGITVLISNDLN------RCGIN--HCTRFETATAMAFISWFATSPSFLLNFWS 172 (176)
Q Consensus 105 ~~lf~vGD~V~a~L~~aAAsAsagitvL~~~d~~------~C~~~--~C~~~~~SiamAFlsw~~~a~S~l~~~w~ 172 (176)
.++.++|||+++||+++|++|+++++++.++|.+ .|... +|+|...|++++|+++++++++++++-..
T Consensus 78 ~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~ 153 (154)
T TIGR01569 78 LIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAIS 153 (154)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557999999999999999999999999988854 48764 39999999999999999999999998543
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.84 E-value=3.9e-08 Score=74.24 Aligned_cols=129 Identities=24% Similarity=0.285 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCC------CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEEEE
Q 030494 37 GGLVLRLLQFVFAAIAVSVMASTS------DFHEATAFCYLVLALGLQSLWSLSLLVLDIYAILVRRSLRNDKVIRLFTV 110 (176)
Q Consensus 37 ~gL~LR~~q~~fa~~Sl~vM~s~~------~F~s~taF~YLva~~~Lq~lWS~~la~~d~yall~k~~l~~~~~~~lf~v 110 (176)
-...+|+.|++++++.+..++... ..+..++.-|.+++.++..++++...+.+.+. .|+ ..+.......++
T Consensus 5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~-~~~~~~~~~~~~ 81 (144)
T PF01284_consen 5 PSGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS--LKY-RPRIPWPLVEFI 81 (144)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--Hhc-ccccccchhHHH
Confidence 457899999999999999998775 35667788999999999999999999999988 222 222222222467
Q ss_pred chhhHHHHhhhhhccchhhHHhhhc-----ccCCCCcCcCcHHHHHHHHHHHHHHHHHhHHHH
Q 030494 111 GDGITSTLTYAAACSSAGITVLISN-----DLNRCGINHCTRFETATAMAFISWFATSPSFLL 168 (176)
Q Consensus 111 GD~V~a~L~~aAAsAsagitvL~~~-----d~~~C~~~~C~~~~~SiamAFlsw~~~a~S~l~ 168 (176)
.|.+.+.+-+++++..+--..-.+. +...+....|+..+++++++|++|++-..|..+
T Consensus 82 ~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~l 144 (144)
T PF01284_consen 82 FDAVFAILWLAAFIALAAYLSDHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAVL 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHC
Confidence 7999999999988877644332111 112222334999999999999999999888753
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.74 E-value=17 Score=31.62 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCC--------------CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 030494 38 GLVLRLLQFVFAAIAVSVMASTSD--------------FHEATAFCYLVLALGLQSLWSLSLLVLDIYAILVRRSLRNDK 103 (176)
Q Consensus 38 gL~LR~~q~~fa~~Sl~vM~s~~~--------------F~s~taF~YLva~~~Lq~lWS~~la~~d~yall~k~~l~~~~ 103 (176)
-.++|+..++|+++-+.-..++ + ..+-.+=.|=+++-.+..+=++..+++|+|-=.....-.+++
T Consensus 25 ~ti~R~~~~lFsliVf~si~~e-Gy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~~Rkr 103 (233)
T KOG4016|consen 25 QTILRVVSWLFSLIVFGSIVNE-GYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVKDRKR 103 (233)
T ss_pred hhHHHHHHHHHHHhheeeeccc-cccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHH
Confidence 4689999999998866644333 3 334456679999999999999999999999432222211222
Q ss_pred eEEEEEEchhhHHHH----hhhhhccchhhHHhhhcccCCCCcCc--CcHHHHHHHHHHHHHHHHHhHHHH
Q 030494 104 VIRLFTVGDGITSTL----TYAAACSSAGITVLISNDLNRCGINH--CTRFETATAMAFISWFATSPSFLL 168 (176)
Q Consensus 104 ~~~lf~vGD~V~a~L----~~aAAsAsagitvL~~~d~~~C~~~~--C~~~~~SiamAFlsw~~~a~S~l~ 168 (176)
. +.+|.+++-| -|-+=|==+ + ....+.=++|. -+..+++|+++|+|.+.-..-+++
T Consensus 104 a----Vl~Dl~~SalwtflwfvGFc~l~---n--qwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~l 165 (233)
T KOG4016|consen 104 A----VLADLGVSALWAFLWFVGFCFLA---N--QWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAVL 165 (233)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHH---H--HhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345544322 121111100 0 11111122343 779999999998876655544444
No 5
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=50.24 E-value=97 Score=26.37 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEEEEchhhHHHHhhhhhccc-----hhhHHhhhc
Q 030494 61 DFHEATAFCYLVLALGLQSLWSLSLLVLDIYAILVRRSLRNDKVIRLFTVGDGITSTLTYAAACSS-----AGITVLISN 135 (176)
Q Consensus 61 ~F~s~taF~YLva~~~Lq~lWS~~la~~d~yall~k~~l~~~~~~~lf~vGD~V~a~L~~aAAsAs-----agitvL~~~ 135 (176)
+-.--++|+ .+|++...=.+.-....+-+++..|.+++..+.+..++.- +.-.++++||+- ..+|+.. +
T Consensus 33 ~~av~~eY~---vsNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S--~ln~LlSaAc~vGL~~ai~~Tv~~-~ 106 (188)
T PF12304_consen 33 KDAVTLEYA---VSNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVS--LLNALLSAACAVGLLLAISLTVAN-Q 106 (188)
T ss_pred cccceehhh---HHHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 333444443 2455555444455566777888888888876554222222 223456777763 2333322 2
Q ss_pred c------------------cCCCCcCcCcHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 030494 136 D------------------LNRCGINHCTRFETATAMAFISWFATSPSFLLNFWSL 173 (176)
Q Consensus 136 d------------------~~~C~~~~C~~~~~SiamAFlsw~~~a~S~l~~~w~L 173 (176)
| .+.|+.++++=|+++.++=+.+-++.+.=+.+++|-.
T Consensus 107 Gr~Ll~~C~f~~~~~~~~it~dCPFDpTRIY~TtL~LW~ps~ll~~~EavfS~rCf 162 (188)
T PF12304_consen 107 GRNLLAGCNFTNLNALSSITNDCPFDPTRIYDTTLALWIPSILLSAVEAVFSVRCF 162 (188)
T ss_pred chhHhhcCCCCChhhccCCCCCCCCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2269999999999999999999999999999998854
No 6
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=28.53 E-value=5.4 Score=42.14 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=23.4
Q ss_pred chhhHHHHhhhhhccchhhHHh--hhcccCCCCcC
Q 030494 111 GDGITSTLTYAAACSSAGITVL--ISNDLNRCGIN 143 (176)
Q Consensus 111 GD~V~a~L~~aAAsAsagitvL--~~~d~~~C~~~ 143 (176)
+|-++|+|+|.||||+++++.+ +++=.+.|.++
T Consensus 884 ~D~vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~ 918 (1289)
T PF06016_consen 884 FDAVTAILSLGAAAASANVTLDAGLQQFLSQCVQA 918 (1289)
T ss_dssp -SEEEECTCHHHHHHHCT--HHHHHHHHHHHHHCT
T ss_pred CCEEEEEeeehhhhhcCCCcHHHHHHHHHHHHHhC
Confidence 4889999999999999999943 55545566554
No 7
>KOG4788 consensus Members of chemokine-like factor super family and related proteins [Defense mechanisms]
Probab=27.74 E-value=3.3e+02 Score=22.05 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHH
Q 030494 40 VLRLLQFVFAAIAVSVMASTSDFHEATAFCYLVLAL 75 (176)
Q Consensus 40 ~LR~~q~~fa~~Sl~vM~s~~~F~s~taF~YLva~~ 75 (176)
.|++.|.+.+++.++...+..-+. +++-+...++
T Consensus 40 ~Lki~e~~l~li~fi~i~~~~~~~--~~~~~~~~vs 73 (172)
T KOG4788|consen 40 LLKILEIVLGLIIFICIASSLAYH--LALAFFEFVS 73 (172)
T ss_pred HHHHHHHHHHHHHheeeecCcccC--CcceeeeHHH
Confidence 689999999999999877765554 4444444433
No 8
>PF15555 DUF4658: Domain of unknown function (DUF4658)
Probab=18.32 E-value=3.2e+02 Score=21.94 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=22.9
Q ss_pred CCCCCC-cchHHHHHHHHHHHHHHHHHHhcC
Q 030494 30 QGMPGT-PGGLVLRLLQFVFAAIAVSVMAST 59 (176)
Q Consensus 30 ~g~pGt-~~gL~LR~~q~~fa~~Sl~vM~s~ 59 (176)
||.|+. .++|.||+.-++.=.+++.+-+.-
T Consensus 63 p~rP~p~g~sLlL~L~~CiLL~vaLglyCgr 93 (129)
T PF15555_consen 63 PGRPRPHGGSLLLRLCVCILLGVALGLYCGR 93 (129)
T ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHccC
Confidence 555543 389999999999988888876554
No 9
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=17.23 E-value=4.7e+02 Score=25.69 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030494 36 PGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYLVLALGLQSLWSLSLLVLDIYAIL 94 (176)
Q Consensus 36 ~~gL~LR~~q~~fa~~Sl~vM~s~~~F~s~taF~YLva~~~Lq~lWS~~la~~d~yall 94 (176)
+.|..++..-.......+++|.+.. .+-+.|-||+++.++...-.-.-.++.=|+.+
T Consensus 370 r~GvP~~al~vt~~fg~lafl~~~~--~~~~vf~wL~~isg~s~~i~W~~I~~shirFR 426 (541)
T COG0833 370 RRGVPLVALLVTLLFGLLAFLNSSF--KETTVFNWLLNISGLSGFIAWGSICLSHIRFR 426 (541)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666676655 66779999999999987744444444444443
No 10
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=13.36 E-value=4e+02 Score=20.32 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 030494 67 AFCYLVLALGLQSLWSLSLLVLDIYAILVRRSLRNDK 103 (176)
Q Consensus 67 aF~YLva~~~Lq~lWS~~la~~d~yall~k~~l~~~~ 103 (176)
-...++++.|..++||.....-.-=++..+-=.+||.
T Consensus 56 ~~S~llgv~g~s~lWsI~ElfeQ~kRV~kGWFP~NPk 92 (94)
T PF14898_consen 56 IWSALLGVLGFSCLWSIGELFEQEKRVEKGWFPKNPK 92 (94)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCCC
Confidence 4567899999999999998887776766666666653
Done!