Query 030494
Match_columns 176
No_of_seqs 108 out of 134
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g03_A HTLV-I capsid protein; 42.3 3.7 0.00013 31.5 -0.8 21 6-30 1-21 (134)
2 2il1_A RAB12; G-protein, GDP, 34.6 17 0.0006 26.7 1.8 45 1-45 1-48 (192)
3 3iyl_W VP1; non-enveloped viru 24.9 3.9 0.00013 41.7 -4.2 33 111-143 890-924 (1299)
4 1ej6_A Lambda2; icosahedral, n 16.5 14 0.00046 37.8 -2.4 22 111-132 883-904 (1289)
5 4h31_A Otcase, ornithine carba 13.7 1.4E+02 0.0047 25.9 3.5 30 84-113 161-190 (358)
6 1gwn_A RHO-related GTP-binding 11.4 99 0.0034 23.1 1.7 44 1-44 1-49 (205)
7 4a8t_A Putrescine carbamoyltra 8.8 2E+02 0.007 24.8 2.9 27 84-113 154-184 (339)
8 4a8p_A Putrescine carbamoyltra 8.4 2.1E+02 0.0073 24.9 2.9 27 84-113 132-162 (355)
9 3l1l_A Arginine/agmatine antip 7.6 7.1E+02 0.024 20.3 5.7 34 65-98 347-380 (445)
10 2ef0_A Ornithine carbamoyltran 7.3 3.5E+02 0.012 22.8 3.6 28 84-113 136-163 (301)
No 1
>1g03_A HTLV-I capsid protein; beta hairpin loop, helix core, viral protein; NMR {Human t-lymphotropic virus 1} SCOP: a.73.1.1
Probab=42.30 E-value=3.7 Score=31.54 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=16.4
Q ss_pred CcccccCCCCCCccCCcceeeeccC
Q 030494 6 PAVHPVEAPPLTEAAGLRVRMKDVQ 30 (176)
Q Consensus 6 ~~~~~~~~~p~~~~~~~~~~m~~~~ 30 (176)
|.+||-+.|+. .+.|.|||++
T Consensus 1 Pi~h~~G~~~~----HR~W~mkdLQ 21 (134)
T 1g03_A 1 PVMHPHGAPPN----HRPWQMKDLQ 21 (134)
T ss_dssp CEECCSSSCCE----ECCSSTHHHH
T ss_pred CccCCCCCCcc----ccchHHHHHH
Confidence 67888887765 4579999986
No 2
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=34.64 E-value=17 Score=26.73 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=13.3
Q ss_pred CCCCCCcccccCCCCCCccCCc-ceeee-ccCCCCCC-cchHHHHHHH
Q 030494 1 MFASRPAVHPVEAPPLTEAAGL-RVRMK-DVQGMPGT-PGGLVLRLLQ 45 (176)
Q Consensus 1 ~~~s~~~~~~~~~~p~~~~~~~-~~~m~-~~~g~pGt-~~gL~LR~~q 45 (176)
|+-||-+-||+.-+|+.+.|+| .-++| -+.|.+|. +.+|.-|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 1 MGSSHHHHHHSSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp ---------------------CCSEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCccccccccccccCCCCCCcccCCceEEEEECCCCCCHHHHHHHHhc
Confidence 6789999999988888765333 22333 34588864 4667777654
No 3
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A
Probab=24.89 E-value=3.9 Score=41.67 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=25.0
Q ss_pred chhhHHHHhhhhhccchhhHHh--hhcccCCCCcC
Q 030494 111 GDGITSTLTYAAACSSAGITVL--ISNDLNRCGIN 143 (176)
Q Consensus 111 GD~V~a~L~~aAAsAsagitvL--~~~d~~~C~~~ 143 (176)
+|-|+++|+|.||||+++++.+ +++=.+.|.++
T Consensus 890 ~d~vtailSLGAA~a~a~~tl~~~l~~~l~~~~~~ 924 (1299)
T 3iyl_W 890 CDSATAIFTIGAAAAAAGTDLIAFVQQLIPRIVAA 924 (1299)
T ss_dssp CSEEEETTTHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeeechhhhhhCCCcHHHHHHHHHHHHHhc
Confidence 4788999999999999999843 55545555554
No 4
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U
Probab=16.48 E-value=14 Score=37.76 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.6
Q ss_pred chhhHHHHhhhhhccchhhHHh
Q 030494 111 GDGITSTLTYAAACSSAGITVL 132 (176)
Q Consensus 111 GD~V~a~L~~aAAsAsagitvL 132 (176)
+|-|+++++|.||||++++|..
T Consensus 883 ~D~vt~i~SLGAA~A~a~~tl~ 904 (1289)
T 1ej6_A 883 GDIVTCMLSLGAAAAGKSMTFD 904 (1289)
T ss_dssp CSEEEECSCHHHHHHHHTCCHH
T ss_pred CcEEEEEeechhhhhccCCcHH
Confidence 5889999999999999998843
No 5
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=13.71 E-value=1.4e+02 Score=25.90 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEEEEchh
Q 030494 84 SLLVLDIYAILVRRSLRNDKVIRLFTVGDG 113 (176)
Q Consensus 84 ~la~~d~yall~k~~l~~~~~~~lf~vGD~ 113 (176)
+|+++|.|.+...+....-.-+.+-.+||.
T Consensus 161 tQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~ 190 (358)
T 4h31_A 161 TQILADFLTMLEHSQGKALADIQFAYLGDA 190 (358)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGCEEEEESCT
T ss_pred hHHHHHHHHHHHHhcCCCcCceEEEecCCC
Confidence 499999999987543222223455689995
No 6
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=11.43 E-value=99 Score=23.14 Aligned_cols=44 Identities=18% Similarity=0.049 Sum_probs=10.7
Q ss_pred CCCCCCcccccCCCCCCccC---Ccceeee-ccCCCCCCc-chHHHHHH
Q 030494 1 MFASRPAVHPVEAPPLTEAA---GLRVRMK-DVQGMPGTP-GGLVLRLL 44 (176)
Q Consensus 1 ~~~s~~~~~~~~~~p~~~~~---~~~~~m~-~~~g~pGt~-~gL~LR~~ 44 (176)
|+-+|--.||.|+||+.+.. ...-+.| -+.|.+|.. .+|.-|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 1 MGSSHHHHHHSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp --------------------------CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCcccccccccCCccCCCCCCCcccceeeEEEEECCCCCCHHHHHHHHh
Confidence 66788888999999988541 1111222 355887754 45555554
No 7
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=8.83 E-value=2e+02 Score=24.79 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhc----cCCCcceEEEEEEchh
Q 030494 84 SLLVLDIYAILVRR----SLRNDKVIRLFTVGDG 113 (176)
Q Consensus 84 ~la~~d~yall~k~----~l~~~~~~~lf~vGD~ 113 (176)
+|++.|.|.+..++ .+... .+-++||.
T Consensus 154 tQaLaDl~Ti~e~~~~G~~l~gl---kva~vGD~ 184 (339)
T 4a8t_A 154 TQELGDLCTMVEHLPEGKKLEDC---KVVFVGDA 184 (339)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGC---EEEEESSC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCC---EEEEECCC
Confidence 49999999999887 34433 33478995
No 8
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=8.42 E-value=2.1e+02 Score=24.89 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhc----cCCCcceEEEEEEchh
Q 030494 84 SLLVLDIYAILVRR----SLRNDKVIRLFTVGDG 113 (176)
Q Consensus 84 ~la~~d~yall~k~----~l~~~~~~~lf~vGD~ 113 (176)
+|++.|.|.+..++ .+... .+-++||.
T Consensus 132 tQaLaDl~TI~E~~~~G~~l~gl---kva~vGD~ 162 (355)
T 4a8p_A 132 TQELGDLCTMVEHLPEGKKLEDC---KVVFVGDA 162 (355)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGC---EEEEESCC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCC---EEEEECCC
Confidence 59999999999887 34433 33478995
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=7.55 E-value=7.1e+02 Score=20.31 Aligned_cols=34 Identities=6% Similarity=-0.071 Sum_probs=26.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030494 65 ATAFCYLVLALGLQSLWSLSLLVLDIYAILVRRS 98 (176)
Q Consensus 65 ~taF~YLva~~~Lq~lWS~~la~~d~yall~k~~ 98 (176)
.+.|-+++....+..+.+..+.......+.+|++
T Consensus 347 ~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 347 TKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 3567788888778888888888888877777666
No 10
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=7.30 E-value=3.5e+02 Score=22.85 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEEEEchh
Q 030494 84 SLLVLDIYAILVRRSLRNDKVIRLFTVGDG 113 (176)
Q Consensus 84 ~la~~d~yall~k~~l~~~~~~~lf~vGD~ 113 (176)
+|++.|.|.+..++.-.+ -+.+-.+||.
T Consensus 136 tQaLaDl~Ti~e~~g~l~--gl~ia~vGD~ 163 (301)
T 2ef0_A 136 LQALADLLTLKEVFGGLA--GLEVAWVGDG 163 (301)
T ss_dssp HHHHHHHHHHHHHHSCCT--TCEEEEESCC
T ss_pred hHHHHHHHHHHHHhCCcC--CcEEEEECCC
Confidence 599999999988754222 2334569993
Done!