Query 030494
Match_columns 176
No_of_seqs 108 out of 134
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 23:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030494.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030494hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g03a_ a.73.1.1 (A:) HTLV-I c 43.7 1.6 0.00012 31.7 -0.8 21 6-30 1-21 (134)
2 d2ysca1 b.72.1.1 (A:8-33) Amyl 14.8 24 0.0018 18.7 0.7 12 20-31 2-14 (26)
3 d1qpma_ a.6.1.7 (A:) mu transp 12.4 39 0.0029 21.5 1.4 16 28-43 12-27 (69)
4 d1t4ba2 d.81.1.1 (A:134-354) A 10.4 40 0.0029 25.6 1.0 22 93-114 197-218 (221)
5 d1tnsa_ a.6.1.7 (A:) mu transp 9.3 59 0.0043 20.9 1.4 15 28-42 12-26 (76)
6 d2hjsa2 d.81.1.1 (A:130-319) U 7.1 80 0.0058 23.2 1.5 25 90-114 163-187 (190)
7 d1yqfa1 d.25.1.1 (A:14-195) Hy 6.1 1.3E+02 0.0092 21.4 2.1 13 20-32 29-41 (182)
8 d2ho2a1 b.72.1.1 (A:253-285) A 5.9 1.1E+02 0.0078 16.9 1.2 12 20-31 3-15 (33)
9 d1hwma_ d.165.1.1 (A:) Ebulin 5.6 61 0.0044 24.8 -0.0 33 10-42 40-72 (251)
10 d1ig4a_ d.10.1.3 (A:) Methylat 5.5 1.3E+02 0.0097 18.9 1.7 16 20-35 11-26 (75)
No 1
>d1g03a_ a.73.1.1 (A:) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=43.66 E-value=1.6 Score=31.67 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=16.5
Q ss_pred CcccccCCCCCCccCCcceeeeccC
Q 030494 6 PAVHPVEAPPLTEAAGLRVRMKDVQ 30 (176)
Q Consensus 6 ~~~~~~~~~p~~~~~~~~~~m~~~~ 30 (176)
|..||-+.|+. .+.|.|||++
T Consensus 1 Pi~h~~Gap~~----HRpWqmkdLQ 21 (134)
T d1g03a_ 1 PVMHPHGAPPN----HRPWQMKDLQ 21 (134)
T ss_dssp CEECCSSSCCE----ECCSSTHHHH
T ss_pred CCCCCCCCCcc----cCchhHHHHH
Confidence 67888888765 4579999986
No 2
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.85 E-value=24 Score=18.71 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=8.3
Q ss_pred CCcce-eeeccCC
Q 030494 20 AGLRV-RMKDVQG 31 (176)
Q Consensus 20 ~~~~~-~m~~~~g 31 (176)
.||+| +++|..|
T Consensus 2 LPpGW~~i~D~ag 14 (26)
T d2ysca1 2 LPPGWRKIHDAAG 14 (26)
T ss_dssp CCTTEEEEEETTE
T ss_pred cCccceeeeccCc
Confidence 47889 4677764
No 3
>d1qpma_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=12.40 E-value=39 Score=21.46 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.7
Q ss_pred ccCCCCCCcchHHHHH
Q 030494 28 DVQGMPGTPGGLVLRL 43 (176)
Q Consensus 28 ~~~g~pGt~~gL~LR~ 43 (176)
+++|+|+|..|+-.|.
T Consensus 12 gLpglP~s~~gv~~~A 27 (69)
T d1qpma_ 12 AADGMPGSVAGVHYRA 27 (69)
T ss_dssp TSTTSCSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHH
Confidence 6889999998887554
No 4
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=10.41 E-value=40 Score=25.56 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=17.1
Q ss_pred HHHhccCCCcceEEEEEEchhh
Q 030494 93 ILVRRSLRNDKVIRLFTVGDGI 114 (176)
Q Consensus 93 ll~k~~l~~~~~~~lf~vGD~V 114 (176)
-+.|++...+..++++++||++
T Consensus 197 GRIR~D~~~~~~l~lw~v~DNL 218 (221)
T d1t4ba2 197 GRLRKLNMGPEFLSAFTVGDQL 218 (221)
T ss_dssp EEEEECTTCTTEEEEEEEEETT
T ss_pred ecccccCCCCCEEEEEEEeccc
Confidence 3455667778889999999986
No 5
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=9.35 E-value=59 Score=20.88 Aligned_cols=15 Identities=27% Similarity=0.725 Sum_probs=11.5
Q ss_pred ccCCCCCCcchHHHH
Q 030494 28 DVQGMPGTPGGLVLR 42 (176)
Q Consensus 28 ~~~g~pGt~~gL~LR 42 (176)
++||+|+|..|+-.|
T Consensus 12 gLpglP~s~~gv~~~ 26 (76)
T d1tnsa_ 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 578899888886644
No 6
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.12 E-value=80 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.1
Q ss_pred HHHHHHhccCCCcceEEEEEEchhh
Q 030494 90 IYAILVRRSLRNDKVIRLFTVGDGI 114 (176)
Q Consensus 90 ~yall~k~~l~~~~~~~lf~vGD~V 114 (176)
+|--+.|++..++..+.++++||++
T Consensus 163 v~VGRiR~d~~~~~~l~~w~v~Dnl 187 (190)
T d2hjsa2 163 TYVGRVRAGQADPCQVNLWIVSDNV 187 (190)
T ss_dssp EEEEEEEECSSCTTEEEEEEEECCC
T ss_pred EEEEeeEcCCCCCCEEEEEEEeCCc
Confidence 3333455677778888999999985
No 7
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=6.12 E-value=1.3e+02 Score=21.41 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=9.6
Q ss_pred CCcceeeeccCCC
Q 030494 20 AGLRVRMKDVQGM 32 (176)
Q Consensus 20 ~~~~~~m~~~~g~ 32 (176)
+|.+|+++|-+|.
T Consensus 29 ~~~gf~i~d~~g~ 41 (182)
T d1yqfa1 29 PPAGWQVVRKPGT 41 (182)
T ss_dssp CCTTCEEEECTTS
T ss_pred CCCCCEEEEcCCc
Confidence 4568888888864
No 8
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.92 E-value=1.1e+02 Score=16.91 Aligned_cols=12 Identities=25% Similarity=0.327 Sum_probs=8.5
Q ss_pred CCcce-eeeccCC
Q 030494 20 AGLRV-RMKDVQG 31 (176)
Q Consensus 20 ~~~~~-~m~~~~g 31 (176)
.||+| +.+|..|
T Consensus 3 LPpGW~ki~D~~G 15 (33)
T d2ho2a1 3 LPAGWMRVQDTSG 15 (33)
T ss_dssp SCTTEEEEECSSC
T ss_pred CCCcceeeecCCC
Confidence 57888 5677765
No 9
>d1hwma_ d.165.1.1 (A:) Ebulin A-chain {Sambucus ebulus [TaxId: 28503]}
Probab=5.59 E-value=61 Score=24.80 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=22.0
Q ss_pred ccCCCCCCccCCcceeeeccCCCCCCcchHHHH
Q 030494 10 PVEAPPLTEAAGLRVRMKDVQGMPGTPGGLVLR 42 (176)
Q Consensus 10 ~~~~~p~~~~~~~~~~m~~~~g~pGt~~gL~LR 42 (176)
||-.++..+.+|+||-+-++.+..|..--|++|
T Consensus 40 Pvl~~~~~~~~~~r~~lV~L~~~~~~titLai~ 72 (251)
T d1hwma_ 40 PVLRRESEVQVKNRFVLVRLTNYNGDTVTSAVD 72 (251)
T ss_dssp EBCCCTTTCCGGGSEEEEEEECTTSCEEEEEEE
T ss_pred EeecCCCCCCCCCcEEEEEEEeCCCCEEEEEEE
Confidence 555444443467789999999877766666655
No 10
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.55 E-value=1.3e+02 Score=18.94 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=12.0
Q ss_pred CCcceeeeccCCCCCC
Q 030494 20 AGLRVRMKDVQGMPGT 35 (176)
Q Consensus 20 ~~~~~~m~~~~g~pGt 35 (176)
.|++|+.+..+-..|+
T Consensus 11 LP~GW~re~~~Rk~g~ 26 (75)
T d1ig4a_ 11 LGPGWKRREVFRKSGA 26 (75)
T ss_dssp TCTTCEEEEECCCSSS
T ss_pred CCCCcEEEEEEEcCCC
Confidence 5889998888855554
Done!