Query 030495
Match_columns 176
No_of_seqs 55 out of 57
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 23:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgp_C Inner centromere protei 13.2 45 0.0015 21.4 0.2 6 79-84 1-6 (43)
2 1c41_A Lumazine synthase; ribo 16.3 46 0.0016 27.2 0.0 22 76-97 48-69 (200)
3 1v54_J Cytochrome C oxidase po 11.8 93 0.0032 20.8 1.4 36 87-132 15-50 (59)
4 1cqt_I POU domain, class 2, as 8.8 96 0.0033 20.4 0.6 18 18-35 8-25 (44)
5 2y69_J Cytochrome C oxidase po 8.8 1.2E+02 0.0042 21.5 1.2 48 75-132 22-71 (80)
6 4g75_A Phosphodiesterase; coli 8.1 1.6E+02 0.0054 25.8 1.8 16 74-89 121-136 (297)
7 2qts_A Acid-sensing ION channe 7.6 2E+02 0.007 23.4 2.2 13 111-123 413-425 (438)
8 2voy_D Sarcoplasmic/endoplasmi 7.5 2.3E+02 0.008 16.2 1.8 15 114-128 6-20 (26)
9 1mn8_A Core protein P15; helic 7.3 1.2E+02 0.0042 22.7 0.7 8 88-95 92-99 (100)
10 1ter_A Tertiapin; toxin; NMR { 7.0 1.2E+02 0.0043 17.9 0.5 7 10-16 3-9 (26)
No 1
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=13.17 E-value=45 Score=21.36 Aligned_cols=6 Identities=67% Similarity=1.630 Sum_probs=3.0
Q ss_pred CCCCCC
Q 030495 79 IPSWAK 84 (176)
Q Consensus 79 ~pswAk 84 (176)
||+||+
T Consensus 1 IP~WA~ 6 (43)
T 2vgp_C 1 IPAWAS 6 (43)
T ss_dssp CCGGGS
T ss_pred CCcccc
Confidence 355554
No 2
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Probab=16.26 E-value=46 Score=27.24 Aligned_cols=22 Identities=27% Similarity=0.102 Sum_probs=13.7
Q ss_pred ccCCCCCCCCCCCCCCCccccc
Q 030495 76 EETIPSWAKPDSDEPPPWATDE 97 (176)
Q Consensus 76 ~e~~pswAkp~sde~PPWaR~E 97 (176)
++++--+-=|++-|+|-=+++=
T Consensus 48 ~~~I~v~~VPGa~ElP~a~~~l 69 (200)
T 1c41_A 48 ESNIVVQSVPGSWELPIAVQRL 69 (200)
Confidence 4555556667888877655543
No 3
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=11.76 E-value=93 Score=20.78 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=21.9
Q ss_pred CCCCCCcccccCCCcCCCCccCchHHHHHHHHHHHHHHHhcceeEe
Q 030495 87 SDEPPPWATDEGKGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEY 132 (176)
Q Consensus 87 sde~PPWaR~E~~~~~a~~~~~lPfgvyLl~ScItAIAAVGSIFEl 132 (176)
+|..|-|-++.. --+.+|-....++.+..+.|++++
T Consensus 15 ~~g~pv~lKgg~----------sd~~Ly~~t~~l~~~g~~~~~y~l 50 (59)
T 1v54_J 15 DNGLPVHLKGGA----------TDNILYRVTMTLCLGGTLYSLYCL 50 (59)
T ss_dssp SSCCCTTTTTCH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeEeecCc----------CceeHHHHHHHHHHHHHHHHHHHH
Confidence 456778876654 223566555556666666677665
No 4
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=8.80 E-value=96 Score=20.41 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=8.9
Q ss_pred cCCcCCCCCCCccccchh
Q 030495 18 SGKQIPSHPKPFLGDGQR 35 (176)
Q Consensus 18 ~~~q~~s~~~~f~gv~~~ 35 (176)
+-.|++.-++|+.|||-|
T Consensus 8 a~~q~~~p~rPYqGVRVk 25 (44)
T 1cqt_I 8 APEQAPAPARPYQGVRVK 25 (44)
T ss_dssp --------CCCCCSCCCS
T ss_pred CccccCCCCCCccceecc
Confidence 456788889999999866
No 5
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=8.75 E-value=1.2e+02 Score=21.47 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=28.6
Q ss_pred CccCCCCCCCC--CCCCCCCcccccCCCcCCCCccCchHHHHHHHHHHHHHHHhcceeEe
Q 030495 75 SEETIPSWAKP--DSDEPPPWATDEGKGLTSQGSFEIPFYVYLLTSTITAIAAIGSIFEY 132 (176)
Q Consensus 75 s~e~~pswAkp--~sde~PPWaR~E~~~~~a~~~~~lPfgvyLl~ScItAIAAVGSIFEl 132 (176)
.++++|..-|- .+|..|-|-++.. .-+.+|-....++.+..++|+++|
T Consensus 22 ~~NkVpe~Qk~FQ~~~g~PV~lKggr----------sd~~Ly~~t~~l~~~G~~~~ly~l 71 (80)
T 2y69_J 22 FENRVAEKQKLFQEDNGLPVHLKGGA----------TDNILYRVTMTLCLGGTLYSLYCL 71 (80)
T ss_dssp CCCCHHHHHHHHTCSSCCCGGGTTCH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHhcCCCCceeeeecCc----------cceeHHHHHHHHHHHHHHHHHHHH
Confidence 44566655431 3567788887655 223566555556666666777766
No 6
>4g75_A Phosphodiesterase; colicin-M like, peptidoglycan degrading enzyme, hydrolase; 1.70A {Pseudomonas aeruginosa} PDB: 4g76_A
Probab=8.13 E-value=1.6e+02 Score=25.77 Aligned_cols=16 Identities=44% Similarity=0.939 Sum_probs=13.3
Q ss_pred CCccCCCCCCCCCCCC
Q 030495 74 ESEETIPSWAKPDSDE 89 (176)
Q Consensus 74 ~s~e~~pswAkp~sde 89 (176)
..+|-+|||.+|.-|.
T Consensus 121 p~~~~~~~~~~~~~~~ 136 (297)
T 4g75_A 121 PNNEGIPSWDRPKIDT 136 (297)
T ss_dssp CCSSSCSCCCCTTCCB
T ss_pred CCccCCccccccccee
Confidence 6788999999988775
No 7
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=7.60 E-value=2e+02 Score=23.44 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 030495 111 FYVYLLTSTITAI 123 (176)
Q Consensus 111 fgvyLl~ScItAI 123 (176)
+|+||++|.|+.+
T Consensus 413 ~GLflG~S~ls~~ 425 (438)
T 2qts_A 413 MGLFIGASILTVL 425 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHH
Confidence 5555555555543
No 8
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=7.51 E-value=2.3e+02 Score=16.22 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhcc
Q 030495 114 YLLTSTITAIAAIGS 128 (176)
Q Consensus 114 yLl~ScItAIAAVGS 128 (176)
|+......+||.||.
T Consensus 6 y~viG~yvg~aTvg~ 20 (26)
T 2voy_D 6 YMAIGGYVGAATVGA 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhe
Confidence 566677777777775
No 9
>1mn8_A Core protein P15; helical bundle, viral protein; 1.00A {Moloney murine leukemia virus} SCOP: a.61.1.6
Probab=7.29 E-value=1.2e+02 Score=22.70 Aligned_cols=8 Identities=50% Similarity=1.472 Sum_probs=4.8
Q ss_pred CCCCCccc
Q 030495 88 DEPPPWAT 95 (176)
Q Consensus 88 de~PPWaR 95 (176)
.+||||+|
T Consensus 92 ~~PPpW~k 99 (100)
T 1mn8_A 92 FDPPPWVK 99 (100)
T ss_dssp HSCCTTC-
T ss_pred hCCCCccC
Confidence 46777876
No 10
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=7.00 E-value=1.2e+02 Score=17.90 Aligned_cols=7 Identities=43% Similarity=0.747 Sum_probs=4.4
Q ss_pred CCccccc
Q 030495 10 SSCNLIR 16 (176)
Q Consensus 10 ~~~~li~ 16 (176)
||||-|+
T Consensus 3 cncnrii 9 (26)
T 1ter_A 3 CNCNRII 9 (26)
T ss_dssp CCTTSSS
T ss_pred ccCCcEe
Confidence 6777554
Done!