Query 030496
Match_columns 176
No_of_seqs 148 out of 207
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 23:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 1.4E-39 4.9E-44 230.8 5.4 62 81-142 2-64 (64)
2 1b9w_A Protein (merozoite surf 15.2 26 0.00088 26.3 -0.6 19 26-44 70-89 (95)
3 3hde_A Lysozyme; antimicrobial 11.6 1.2E+02 0.0041 23.3 2.2 25 82-106 137-161 (165)
4 1xju_A Lysozyme; secreted inac 10.9 1.3E+02 0.0045 22.9 2.2 27 82-108 127-153 (163)
5 2anv_A Lysozyme; direct method 9.8 92 0.0032 23.1 0.9 21 83-104 123-143 (146)
6 1xjt_A Lysozyme; open conforma 8.6 1.8E+02 0.006 23.0 2.2 27 82-108 155-181 (191)
7 2k2w_A Recombination and DNA r 8.4 1E+02 0.0034 23.6 0.7 13 81-93 17-29 (118)
8 3n8i_A Low molecular weight ph 8.3 1.1E+02 0.0036 23.1 0.7 9 33-41 127-135 (157)
9 2xc7_A Phosphorylated adapter 8.2 36 0.0012 25.3 -1.9 17 127-143 60-76 (104)
10 3q12_A Pantoate--beta-alanine 7.8 99 0.0034 26.6 0.4 11 82-92 56-66 (287)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=1.4e-39 Score=230.76 Aligned_cols=62 Identities=60% Similarity=1.007 Sum_probs=58.6
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhchhh-hcCCCcccchhhHHHhhccCCCCCccccchh
Q 030496 81 EEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK 142 (176)
Q Consensus 81 eePvyVNaKQY~rIlrRRq~Rakle~~~kl~-k~rk~YlHESRH~HAm~R~RG~gGRFL~~~~ 142 (176)
|||||||||||++|||||++|+|+|++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 7999999999999999999999999999985 8899999999999999999999999999875
No 2
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=15.23 E-value=26 Score=26.26 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=15.8
Q ss_pred cccc-CCCCCCCCccccccc
Q 030496 26 MAPA-AYPYPDPYYRSIFAP 44 (176)
Q Consensus 26 ~a~~-~yPy~Dpyygg~~a~ 44 (176)
|+|. ..||..|||.|+|-.
T Consensus 70 IvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 70 IVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp EEEECCSTTEEEEGGGTEEE
T ss_pred EEEECCCCCCCcceeeEEec
Confidence 5555 889999999999975
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=11.58 E-value=1.2e+02 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=18.8
Q ss_pred CceeechhhhHHHHHHHHHHHHHHH
Q 030496 82 EPVFVNAKQYHGILRRRQSRAKAES 106 (176)
Q Consensus 82 ePvyVNaKQY~rIlrRRq~Rakle~ 106 (176)
.-+|++-|...++.+||++...|=.
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHH
Confidence 3455667888999999998877643
No 4
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=10.92 E-value=1.3e+02 Score=22.90 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=20.7
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHhc
Q 030496 82 EPVFVNAKQYHGILRRRQSRAKAESEN 108 (176)
Q Consensus 82 ePvyVNaKQY~rIlrRRq~Rakle~~~ 108 (176)
.-++++-|...++.+||++...|=..+
T Consensus 127 ~W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 127 DFVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 345667778999999999988876543
No 5
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=9.78 E-value=92 Score=23.11 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=15.3
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 030496 83 PVFVNAKQYHGILRRRQSRAKA 104 (176)
Q Consensus 83 PvyVNaKQY~rIlrRRq~Rakl 104 (176)
-+|++-| ..++.+||++.+.|
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4455667 78889999887765
No 6
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=8.61 E-value=1.8e+02 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=20.8
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHhc
Q 030496 82 EPVFVNAKQYHGILRRRQSRAKAESEN 108 (176)
Q Consensus 82 ePvyVNaKQY~rIlrRRq~Rakle~~~ 108 (176)
.-+|++-|...++.+||++...|=..+
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 345667778999999999988876543
No 7
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=8.44 E-value=1e+02 Score=23.61 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=10.7
Q ss_pred CCceeechhhhHH
Q 030496 81 EEPVFVNAKQYHG 93 (176)
Q Consensus 81 eePvyVNaKQY~r 93 (176)
..=||.|+|||.+
T Consensus 17 KtFvFLn~KQ~kk 29 (118)
T 2k2w_A 17 KVFLFLNAKQYKK 29 (118)
T ss_dssp CEEEESCSSTHHH
T ss_pred CEEEEeCHHHHHH
Confidence 4678999999975
No 8
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=8.25 E-value=1.1e+02 Score=23.12 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=7.3
Q ss_pred CCCCCcccc
Q 030496 33 YPDPYYRSI 41 (176)
Q Consensus 33 y~Dpyygg~ 41 (176)
-.||||||.
T Consensus 127 VpDPy~~~~ 135 (157)
T 3n8i_A 127 IEDPYYGND 135 (157)
T ss_dssp CCCCTTSCH
T ss_pred CCCCCCCCH
Confidence 579999874
No 9
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=8.20 E-value=36 Score=25.35 Aligned_cols=17 Identities=53% Similarity=0.565 Sum_probs=13.7
Q ss_pred hhccCCCCCccccchhh
Q 030496 127 LRRARGCGGRFLNSKKN 143 (176)
Q Consensus 127 m~R~RG~gGRFL~~~~~ 143 (176)
-.|.|-|||-||+-=+.
T Consensus 60 G~RrRTpGGVF~~LlK~ 76 (104)
T 2xc7_A 60 GSRRRTPGGVFLNLLKN 76 (104)
T ss_dssp SSSCCCHHHHHHHHHHH
T ss_pred CCcCCCCchhHHHHHhc
Confidence 36899999999976554
No 10
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=7.80 E-value=99 Score=26.58 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=8.7
Q ss_pred CceeechhhhH
Q 030496 82 EPVFVNAKQYH 92 (176)
Q Consensus 82 ePvyVNaKQY~ 92 (176)
--|||||-||.
T Consensus 56 VSIFVNP~QF~ 66 (287)
T 3q12_A 56 VTIFVNPLQFE 66 (287)
T ss_dssp EEECCCGGGCS
T ss_pred EEeccCcccCC
Confidence 46899999963
Done!