Query 030496
Match_columns 176
No_of_seqs 148 out of 207
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 23:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030496.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030496hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 13.3 23 0.0016 27.9 0.4 10 82-91 48-57 (276)
2 d1ihoa_ c.26.1.4 (A:) Pantothe 10.2 33 0.0024 27.0 0.4 11 82-92 53-63 (282)
3 d2a84a1 c.26.1.4 (A:3-288) Pan 9.2 30 0.0022 27.3 -0.2 12 82-93 62-73 (286)
4 d1ob1c2 g.3.11.4 (C:46-96) Mer 8.8 46 0.0033 20.9 0.7 22 24-45 27-49 (51)
5 d1xjua_ d.2.1.3 (A:) Endolysin 5.6 1.8E+02 0.013 19.5 2.6 24 86-109 131-154 (158)
6 d1z60a1 g.49.1.2 (A:328-386) T 5.5 62 0.0045 20.6 -0.0 7 117-123 47-53 (59)
7 d1e0na_ b.72.1.1 (A:) Hypothet 5.1 98 0.0071 17.0 0.7 10 81-90 10-19 (27)
8 d1p8aa_ c.44.1.1 (A:) Tyrosine 4.7 1.1E+02 0.0077 20.0 0.8 8 33-40 115-122 (146)
9 d1d1qa_ c.44.1.1 (A:) Tyrosine 4.5 1E+02 0.0075 20.4 0.6 8 34-41 130-137 (159)
10 d1a8ya1 c.47.1.3 (A:3-126) Cal 4.5 3E+02 0.022 17.1 3.0 17 80-96 10-26 (124)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=13.27 E-value=23 Score=27.87 Aligned_cols=10 Identities=50% Similarity=0.737 Sum_probs=7.4
Q ss_pred Cceeechhhh
Q 030496 82 EPVFVNAKQY 91 (176)
Q Consensus 82 ePvyVNaKQY 91 (176)
-.|||||.||
T Consensus 48 vSIFVNP~QF 57 (276)
T d1v8fa_ 48 VSVFVNPLQF 57 (276)
T ss_dssp EEECCCGGGC
T ss_pred EEEEecCccC
Confidence 4578888884
No 2
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=10.23 E-value=33 Score=27.04 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.5
Q ss_pred CceeechhhhH
Q 030496 82 EPVFVNAKQYH 92 (176)
Q Consensus 82 ePvyVNaKQY~ 92 (176)
-.|||||.||.
T Consensus 53 vSIFVNP~QF~ 63 (282)
T d1ihoa_ 53 VSIFVNPMQFD 63 (282)
T ss_dssp EEECCCGGGCS
T ss_pred EEEEecCccCc
Confidence 46899998864
No 3
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.16 E-value=30 Score=27.29 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=9.4
Q ss_pred CceeechhhhHH
Q 030496 82 EPVFVNAKQYHG 93 (176)
Q Consensus 82 ePvyVNaKQY~r 93 (176)
-.|||||.||.-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 578999999653
No 4
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=8.84 E-value=46 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=17.3
Q ss_pred cccccc-CCCCCCCCcccccccC
Q 030496 24 HAMAPA-AYPYPDPYYRSIFAPY 45 (176)
Q Consensus 24 ~s~a~~-~yPy~Dpyygg~~a~y 45 (176)
.-|+|. .-|-..|||.|+|-.|
T Consensus 27 kkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 27 KKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp CCCEEEECSTTCCEEGGGTEECC
T ss_pred ceEEEEecCCCCCcccceEEeec
Confidence 456766 6788889999999875
No 5
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=5.62 E-value=1.8e+02 Score=19.52 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=17.8
Q ss_pred echhhhHHHHHHHHHHHHHHHhch
Q 030496 86 VNAKQYHGILRRRQSRAKAESENK 109 (176)
Q Consensus 86 VNaKQY~rIlrRRq~Rakle~~~k 109 (176)
.+-|-..++.+||++.+.|=.++.
T Consensus 131 ~~g~~~~GL~~RR~~E~~L~l~g~ 154 (158)
T d1xjua_ 131 SNGVPLRGLKIRREKERQLCLTGL 154 (158)
T ss_dssp ETTEECHHHHHHHHHHHHHHHTTT
T ss_pred cCCEEChhHHHHHHHHHHHHHccc
Confidence 334557899999999888866654
No 6
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.52 E-value=62 Score=20.60 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=3.7
Q ss_pred cccchhh
Q 030496 117 YLHESRH 123 (176)
Q Consensus 117 YlHESRH 123 (176)
|+||+.|
T Consensus 47 fiHe~lh 53 (59)
T d1z60a1 47 FVHDSLH 53 (59)
T ss_dssp TTTTTSC
T ss_pred hhhhhhc
Confidence 4555554
No 7
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.07 E-value=98 Score=17.04 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=8.0
Q ss_pred CCceeechhh
Q 030496 81 EEPVFVNAKQ 90 (176)
Q Consensus 81 eePvyVNaKQ 90 (176)
..|+|-||.+
T Consensus 10 grpmyynaq~ 19 (27)
T d1e0na_ 10 GRPLYYNAEQ 19 (27)
T ss_dssp SSEEEEETTT
T ss_pred Cceeeeehhh
Confidence 4799999864
No 8
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]}
Probab=4.66 E-value=1.1e+02 Score=20.00 Aligned_cols=8 Identities=63% Similarity=1.169 Sum_probs=5.8
Q ss_pred CCCCCccc
Q 030496 33 YPDPYYRS 40 (176)
Q Consensus 33 y~Dpyygg 40 (176)
-.|||||+
T Consensus 115 I~DPy~~~ 122 (146)
T d1p8aa_ 115 VDDPYYSS 122 (146)
T ss_dssp SCCCSSSS
T ss_pred CCCCCCCc
Confidence 35999874
No 9
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.53 E-value=1e+02 Score=20.45 Aligned_cols=8 Identities=50% Similarity=1.132 Sum_probs=5.9
Q ss_pred CCCCcccc
Q 030496 34 PDPYYRSI 41 (176)
Q Consensus 34 ~Dpyygg~ 41 (176)
.|||||++
T Consensus 130 ~DP~~~~~ 137 (159)
T d1d1qa_ 130 EDPWYGDI 137 (159)
T ss_dssp CCCTTSCH
T ss_pred CCCCCCCH
Confidence 49998863
No 10
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.45 E-value=3e+02 Score=17.10 Aligned_cols=17 Identities=35% Similarity=0.683 Sum_probs=13.2
Q ss_pred CCCceeechhhhHHHHH
Q 030496 80 VEEPVFVNAKQYHGILR 96 (176)
Q Consensus 80 ~eePvyVNaKQY~rIlr 96 (176)
.+.-|-+|.+.|..+|+
T Consensus 10 ~~~V~~L~~~nf~~~l~ 26 (124)
T d1a8ya1 10 VDRVINVNAKNYKNVFK 26 (124)
T ss_dssp CCCCEECCTTTHHHHHH
T ss_pred CCccEECCHHHHHHHHH
Confidence 34677899999998874
Done!