BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030498
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
           3300001g02) Product Homologous To Ubiquitin Fold
          Length = 105

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 64  SAMRISILKLDGT--SFAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCL 121
           S M + + K+DG      V+ +ATV DLK AI++ V   ++   G +HISW +VW  Y L
Sbjct: 6   SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 65

Query: 122 SHQNQKLLDENSALQDCGVRNNSQVQFV 149
           +   +KL ++   L+D G+RN  +V F+
Sbjct: 66  TSAGEKLTEDRKKLRDYGIRNRDEVSFI 93


>pdb|3F51|A Chain A, Crystal Structure Of The Clp Gene Regulator Clgr From
           Corynebacterium Glutamicum
 pdb|3F51|B Chain B, Crystal Structure Of The Clp Gene Regulator Clgr From
           Corynebacterium Glutamicum
 pdb|3F51|C Chain C, Crystal Structure Of The Clp Gene Regulator Clgr From
           Corynebacterium Glutamicum
 pdb|3F51|D Chain D, Crystal Structure Of The Clp Gene Regulator Clgr From
           Corynebacterium Glutamicum
 pdb|3F51|E Chain E, Crystal Structure Of The Clp Gene Regulator Clgr From
           Corynebacterium Glutamicum
 pdb|3F51|F Chain F, Crystal Structure Of The Clp Gene Regulator Clgr From
           Corynebacterium Glutamicum
 pdb|3F52|A Chain A, Crystal Structure Of The Clp Gene Regulator Clgr From C.
           Glutamicum
 pdb|3F52|E Chain E, Crystal Structure Of The Clp Gene Regulator Clgr From C.
           Glutamicum
          Length = 117

 Score = 27.3 bits (59), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 32  TLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKL 91
           T T LLD PI    P+K      + L+   +G+A+R         SF      T+++L  
Sbjct: 3   TYTTLLDKPISESAPRKAP----EPLLREALGAALR---------SFRADKGVTLRELAE 49

Query: 92  AIKKKVNDMEQSNLGHRHISWKHVWANYC 120
           A +     + +   G + +S   + A+ C
Sbjct: 50  ASRVSPGYLSELERGRKEVS-SELLASVC 77


>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1
           Apical Domain
          Length = 194

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%)

Query: 58  ISLE-MGSAMRISILKLD-------GTSFAVMNSATVKDLKLAIKKKVNDMEQSNLGHR 108
           + LE +GSA R+ + K D       GT+ AV N A  K L+  I K  +D ++  LG R
Sbjct: 127 VGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRA--KHLRAEIDKSDSDWDREKLGER 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,298,425
Number of Sequences: 62578
Number of extensions: 146202
Number of successful extensions: 369
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 7
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)