BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030498
         (176 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9BV90|SNR25_HUMAN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo
           sapiens GN=SNRNP25 PE=1 SV=1
          Length = 132

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 2/123 (1%)

Query: 29  LHSTLTALLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG--TSFAVMNSATV 86
               L  ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG      V+ SATV
Sbjct: 4   FQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATV 63

Query: 87  KDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQV 146
            DLK AI++ V   ++   G +HISW +VW  Y L+   +KL ++   L+D G+RN  +V
Sbjct: 64  LDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEV 123

Query: 147 QFV 149
            F+
Sbjct: 124 SFI 126


>sp|Q3ZBQ4|SNR25_BOVIN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos
           taurus GN=SNRNP25 PE=2 SV=2
          Length = 123

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 2/116 (1%)

Query: 36  LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG--TSFAVMNSATVKDLKLAI 93
           ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG      V+ +ATV DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 94  KKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 149
           ++ V   ++   G +HISW +VW  Y L+   +KL ++   L+D G+RN  +V F+
Sbjct: 62  QRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117


>sp|Q8VIK1|SNR25_MOUSE U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus
           musculus GN=Snrnp25 PE=1 SV=1
          Length = 123

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 2/116 (1%)

Query: 36  LLDDPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDG--TSFAVMNSATVKDLKLAI 93
           ++ DP+L D+P + TL +V++ I+LE G AM + + K+DG      V+ +ATV DLK AI
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 94  KKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFV 149
           ++ V   ++   G +HISW +VW  Y L+   +KL ++   L+D G+RN  +V F+
Sbjct: 62  QRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117


>sp|Q6LMV1|GSH1_PHOPR Glutamate--cysteine ligase OS=Photobacterium profundum GN=gshA PE=3
           SV=1
          Length = 524

 Score = 32.0 bits (71), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 89  LKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLL------DENSALQDCGVRN 142
           L  A+    +DM+ S L      W+  W    L  +N  L+       E  +LQD GVR 
Sbjct: 355 LTWAVLTPSDDMDDSELA----CWRDNWNRVVLDGRNPDLMLKIGCNGERLSLQDWGVRV 410

Query: 143 NSQVQFVPFVLSKGSGKHSKRRKHRIFRG 171
             ++Q V  V+ K +G +  +      +G
Sbjct: 411 FKELQDVAVVMDKAAGNNKYQETCERLKG 439


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,023,347
Number of Sequences: 539616
Number of extensions: 2207083
Number of successful extensions: 5779
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5773
Number of HSP's gapped (non-prelim): 7
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)