Query 030498
Match_columns 176
No_of_seqs 112 out of 133
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2y_A 3300001G02RIK protein; 100.0 2.5E-30 8.7E-35 195.1 8.7 95 62-156 4-100 (105)
2 3mtn_B UBA80, ubcep1, ubiquiti 99.3 7.4E-12 2.5E-16 86.3 8.7 76 63-154 1-78 (85)
3 3n3k_B Ubiquitin; hydrolase, p 99.3 5.2E-12 1.8E-16 87.3 7.3 76 63-154 1-78 (85)
4 3v6c_B Ubiquitin; structural g 99.3 1.5E-11 5.1E-16 87.4 9.0 78 60-153 12-91 (91)
5 3phx_B Ubiquitin-like protein 99.3 1.9E-11 6.6E-16 84.1 9.3 75 64-154 3-79 (79)
6 1ndd_A NEDD8, protein (ubiquit 99.3 1.6E-11 5.4E-16 82.6 8.3 73 66-154 1-75 (76)
7 3dbh_I NEDD8; cell cycle, acti 99.3 1.7E-11 5.9E-16 85.3 8.8 77 62-154 9-87 (88)
8 3a9j_A Ubiquitin; protein comp 99.3 2.1E-11 7.1E-16 82.0 8.4 73 66-154 1-75 (76)
9 4hcn_B Polyubiquitin, ubiquiti 99.3 1.6E-11 5.5E-16 88.8 7.9 79 60-154 17-97 (98)
10 4fbj_B NEDD8; effector-HOST ta 99.2 3.9E-11 1.3E-15 85.3 8.0 74 66-155 1-76 (88)
11 3k9o_B Ubiquitin, UBB+1; E2-25 99.2 5.7E-11 1.9E-15 84.5 8.5 75 65-155 1-77 (96)
12 2dzi_A Ubiquitin-like protein 99.2 5.5E-11 1.9E-15 81.4 7.4 73 64-152 6-80 (81)
13 1sif_A Ubiquitin; hydrophobic 99.2 7.1E-11 2.4E-15 83.9 8.0 76 63-154 7-84 (88)
14 1wh3_A 59 kDa 2'-5'-oligoadeny 99.2 7.8E-11 2.7E-15 82.2 8.0 75 64-154 6-82 (87)
15 2kk8_A Uncharacterized protein 99.2 1.2E-10 4E-15 82.9 8.8 74 62-150 7-82 (84)
16 3vdz_A Ubiquitin-40S ribosomal 99.2 4.8E-11 1.6E-15 88.7 6.9 77 62-154 32-110 (111)
17 4eew_A Large proline-rich prot 99.2 1.3E-10 4.4E-15 81.6 8.3 75 60-151 12-88 (88)
18 2hj8_A Interferon-induced 17 k 99.2 1.1E-10 3.9E-15 82.7 8.0 77 64-156 3-81 (88)
19 2bwf_A Ubiquitin-like protein 99.1 1.9E-10 6.5E-15 78.0 8.4 70 65-151 4-75 (77)
20 1yx5_B Ubiquitin; proteasome, 99.1 1.9E-10 6.5E-15 82.7 8.4 73 66-154 1-75 (98)
21 2wyq_A HHR23A, UV excision rep 99.1 3.4E-10 1.2E-14 78.4 9.0 71 65-151 5-80 (85)
22 3b08_A Polyubiquitin-C, ubiqui 99.1 5.1E-10 1.7E-14 84.2 10.4 75 64-154 75-151 (152)
23 2uyz_B Small ubiquitin-related 99.1 2.1E-10 7.1E-15 78.9 7.6 75 64-154 2-78 (79)
24 2faz_A Ubiquitin-like containi 99.1 3.2E-10 1.1E-14 77.6 8.5 72 65-152 2-77 (78)
25 3b1l_X E3 ubiquitin-protein li 98.7 7.3E-12 2.5E-16 85.3 0.0 73 66-154 1-75 (76)
26 1wy8_A NP95-like ring finger p 99.1 3.4E-10 1.1E-14 79.4 8.5 75 64-154 6-84 (89)
27 1uel_A HHR23B, UV excision rep 99.1 6.6E-10 2.3E-14 79.9 9.5 73 66-154 1-78 (95)
28 2ojr_A Ubiquitin; lanthide-bin 99.1 4.1E-10 1.4E-14 83.4 8.6 75 64-154 34-110 (111)
29 4dwf_A HLA-B-associated transc 99.1 7.6E-10 2.6E-14 77.9 8.9 74 64-154 4-79 (90)
30 1v5o_A 1700011N24RIK protein; 99.0 5.9E-10 2E-14 81.4 7.9 75 65-154 7-87 (102)
31 1wia_A Hypothetical ubiquitin- 99.0 4.7E-10 1.6E-14 80.2 6.8 71 64-152 6-78 (95)
32 2l7r_A Ubiquitin-like protein 99.0 6.8E-10 2.3E-14 79.8 7.6 74 63-154 17-92 (93)
33 1ttn_A DC-UBP, dendritic cell- 99.0 7.8E-10 2.7E-14 81.2 7.7 76 61-152 19-96 (106)
34 3m62_B UV excision repair prot 99.0 5.7E-10 2E-14 82.2 6.7 71 66-152 2-74 (106)
35 2klc_A Ubiquilin-1; ubiquitin- 99.0 1.6E-09 5.4E-14 79.2 9.0 75 63-154 23-99 (101)
36 1yqb_A Ubiquilin 3; structural 99.0 1.5E-09 5.1E-14 79.4 8.8 76 64-155 21-97 (100)
37 1wf9_A NPL4 family protein; be 99.0 7.3E-10 2.5E-14 81.9 7.3 73 64-151 6-94 (107)
38 1wyw_B Ubiquitin-like protein 99.0 1.1E-09 3.6E-14 79.4 7.9 78 61-154 17-96 (97)
39 1wx8_A Riken cDNA 4931431F19; 99.0 5.2E-10 1.8E-14 80.0 6.2 74 64-154 16-91 (96)
40 2kan_A Uncharacterized protein 99.0 1.6E-09 5.5E-14 78.4 8.2 76 62-154 12-90 (94)
41 2dzj_A Synaptic glycoprotein S 99.0 7.3E-10 2.5E-14 79.8 6.2 69 66-150 11-87 (88)
42 3rt3_B Ubiquitin-like protein 99.0 2.2E-09 7.4E-14 82.6 9.1 77 63-155 79-157 (159)
43 1uh6_A Ubiquitin-like 5; beta- 99.0 1.6E-09 5.3E-14 81.0 7.9 67 66-148 29-97 (100)
44 1we6_A Splicing factor, putati 99.0 3.1E-09 1E-13 78.5 8.8 76 63-154 25-106 (111)
45 2kzr_A Ubiquitin thioesterase 98.9 8.6E-10 2.9E-14 78.1 5.4 71 66-151 1-77 (86)
46 3l0w_B Monoubiquitinated proli 98.9 2.3E-09 7.9E-14 85.3 8.2 73 66-154 1-75 (169)
47 1wgd_A Homocysteine-responsive 98.9 1.6E-09 5.6E-14 77.2 6.6 75 64-154 6-88 (93)
48 1j8c_A Ubiquitin-like protein 98.9 2.6E-09 9E-14 81.4 8.1 75 63-154 30-106 (125)
49 3m63_B Ubiquitin domain-contai 98.9 8.3E-10 2.8E-14 81.0 5.1 74 60-150 23-98 (101)
50 3b08_A Polyubiquitin-C, ubiqui 98.9 3.1E-09 1E-13 79.9 8.3 72 66-153 1-74 (152)
51 3u30_A Ubiquitin, linear DI-ub 98.9 3.7E-09 1.3E-13 82.7 8.9 75 64-154 95-171 (172)
52 1wx7_A Ubiquilin 3; ubiquitin- 98.9 3.5E-09 1.2E-13 77.5 8.0 76 64-155 16-92 (106)
53 2kdi_A Ubiquitin, vacuolar pro 98.9 6.8E-09 2.3E-13 77.6 8.6 75 64-154 8-84 (114)
54 2kd0_A LRR repeats and ubiquit 98.9 5.7E-09 2E-13 73.9 7.8 72 62-149 8-81 (85)
55 1wxv_A BAG-family molecular ch 98.9 5.5E-09 1.9E-13 74.2 7.6 72 64-151 6-84 (92)
56 3u5e_m 60S ribosomal protein L 98.9 2.3E-10 7.9E-15 86.8 0.0 73 66-154 1-75 (128)
57 3q3f_A Ribonuclease/ubiquitin 98.9 6.3E-09 2.2E-13 85.1 8.4 74 66-155 106-181 (189)
58 3u30_A Ubiquitin, linear DI-ub 98.9 9.6E-09 3.3E-13 80.3 9.1 77 62-154 17-95 (172)
59 3rt3_B Ubiquitin-like protein 98.9 8.1E-09 2.8E-13 79.3 8.5 71 65-151 2-76 (159)
60 4a20_A Ubiquitin-like protein 98.9 5.9E-09 2E-13 76.9 7.1 72 63-150 17-94 (98)
61 1v86_A DNA segment, CHR 7, way 98.8 8.4E-09 2.9E-13 74.6 7.2 69 64-150 16-86 (95)
62 1we7_A SF3A1 protein; structur 98.8 1.2E-08 4.1E-13 75.8 8.1 75 64-154 24-110 (115)
63 3u5c_f 40S ribosomal protein S 98.8 8.5E-10 2.9E-14 87.3 0.1 74 66-155 1-76 (152)
64 1x1m_A Ubiquitin-like protein 98.7 1.9E-08 6.6E-13 74.0 6.3 74 65-153 12-101 (107)
65 3plu_A Ubiquitin-like modifier 98.7 4.5E-08 1.5E-12 72.6 8.0 70 63-148 19-90 (93)
66 1wju_A NEDD8 ultimate buster-1 98.7 3E-08 1E-12 74.1 7.0 71 67-154 17-93 (100)
67 1v5t_A 8430435I17RIK protein; 98.7 2.9E-08 9.8E-13 70.9 6.1 70 64-150 6-81 (90)
68 3ai5_A Yeast enhanced green fl 98.7 4.7E-08 1.6E-12 85.3 8.6 76 62-153 230-307 (307)
69 1wgg_A Ubiquitin carboxyl-term 98.6 5.9E-08 2E-12 70.5 6.2 69 64-150 6-77 (96)
70 4dbg_A Ranbp-type and C3HC4-ty 98.6 1.2E-07 4.2E-12 71.3 8.1 68 66-149 25-97 (105)
71 2daf_A FLJ35834 protein; hypot 98.6 8.8E-08 3E-12 73.9 7.4 72 65-152 15-89 (118)
72 2kdb_A Homocysteine-responsive 98.6 6.2E-08 2.1E-12 71.4 6.2 70 64-148 22-98 (99)
73 2gow_A HCG-1 protein, ubiquiti 98.6 1.8E-07 6.1E-12 72.0 8.7 85 62-154 14-102 (125)
74 1v6e_A Cytoskeleton-associated 98.6 1.5E-07 5.1E-12 67.7 7.2 70 66-150 8-86 (95)
75 2lxa_A Ubiquitin-like protein 98.6 9.2E-08 3.2E-12 69.0 6.0 68 66-149 2-75 (87)
76 1wgh_A Ubiquitin-like 3, HCG-1 98.6 2.7E-07 9.2E-12 70.2 8.5 92 64-163 15-110 (116)
77 2dzm_A FAS-associated factor 1 98.5 2.4E-07 8.3E-12 68.7 7.2 69 66-149 9-79 (100)
78 2kjr_A CG11242; UBL, ubiquitin 98.5 5E-07 1.7E-11 66.0 7.7 71 65-150 15-94 (95)
79 1t0y_A Tubulin folding cofacto 98.5 4.7E-07 1.6E-11 68.3 7.4 71 65-150 6-85 (122)
80 1oqy_A HHR23A, UV excision rep 98.4 3.2E-07 1.1E-11 81.6 6.0 76 64-154 6-86 (368)
81 2kj6_A Tubulin folding cofacto 98.4 1.2E-06 4.1E-11 64.4 7.9 70 66-150 15-94 (97)
82 1wjn_A Tubulin-folding protein 98.4 7.6E-07 2.6E-11 64.1 6.6 71 65-150 9-91 (97)
83 4ajy_B Transcription elongatio 98.3 1.5E-06 5.1E-11 66.8 7.6 71 66-152 3-81 (118)
84 1se9_A Ubiquitin family; ubiqu 98.3 2.2E-06 7.4E-11 66.4 8.5 86 61-155 12-106 (126)
85 2fnj_B Transcription elongatio 98.3 2.1E-06 7.2E-11 65.8 7.5 71 65-151 2-80 (118)
86 4b6w_A Tubulin-specific chaper 98.2 2.8E-06 9.5E-11 60.9 7.1 71 66-151 3-83 (86)
87 2io1_B Small ubiquitin-related 98.2 4.8E-06 1.6E-10 60.6 8.1 78 62-155 4-83 (94)
88 2pjh_A Protein NPL4, nuclear p 98.2 1.2E-06 4.2E-11 62.1 4.3 74 64-150 3-79 (80)
89 3shq_A UBLCP1; phosphatase, hy 98.1 4.2E-06 1.4E-10 72.8 7.5 71 63-150 3-78 (320)
90 2io0_B Small ubiquitin-related 98.1 1.1E-05 3.8E-10 58.5 8.0 77 63-155 3-81 (91)
91 2d07_B Ubiquitin-like protein 98.1 1.9E-05 6.4E-10 57.2 8.3 77 61-153 13-91 (93)
92 3a4r_A Nfatc2-interacting prot 98.0 3.7E-05 1.3E-09 53.9 8.2 71 62-148 4-77 (79)
93 1wm3_A Ubiquitin-like protein 97.9 3E-05 1E-09 53.2 7.1 68 66-149 2-71 (72)
94 1wz0_A Ubiquitin-like protein 97.9 4.7E-05 1.6E-09 56.6 8.1 78 61-154 20-99 (104)
95 2k8h_A Small ubiquitin protein 97.8 4.5E-05 1.5E-09 57.4 7.1 78 61-154 22-101 (110)
96 2eke_C Ubiquitin-like protein 97.7 9.6E-05 3.3E-09 55.3 7.5 77 60-153 26-104 (106)
97 2xzm_9 RPS31E; ribosome, trans 97.6 1.2E-05 3.9E-10 66.1 0.8 68 66-154 1-70 (189)
98 2bps_A YUKD protein; ubiquitin 97.5 0.00022 7.5E-09 51.4 6.4 74 62-147 1-79 (81)
99 3kyd_D Small ubiquitin-related 97.2 0.0012 4E-08 50.3 7.9 93 39-150 17-111 (115)
100 3goe_A DNA repair protein RAD6 96.9 0.0044 1.5E-07 45.0 7.8 70 64-148 8-79 (82)
101 3pge_A SUMO-modified prolifera 96.5 0.0099 3.4E-07 49.0 8.0 77 61-154 25-103 (200)
102 3tix_A Ubiquitin-like protein 96.1 0.011 3.8E-07 49.3 6.6 77 61-154 53-131 (207)
103 2jxx_A Nfatc2-interacting prot 95.8 0.036 1.2E-06 40.7 7.5 74 59-148 19-95 (97)
104 2kc2_A Talin-1, F1; FERM, adhe 95.7 0.028 9.5E-07 43.5 6.7 33 67-99 13-47 (128)
105 2al3_A TUG long isoform; TUG U 95.4 0.04 1.4E-06 40.5 6.3 78 59-152 3-82 (90)
106 2cr5_A Reproduction 8; UBX dom 95.0 0.15 5E-06 37.5 8.4 85 43-152 10-99 (109)
107 3qx1_A FAS-associated factor 1 94.8 0.12 4.3E-06 35.8 7.3 70 64-149 6-81 (84)
108 3v7o_A Minor nucleoprotein VP3 94.3 0.0076 2.6E-07 50.9 0.0 77 61-154 17-95 (227)
109 2ns5_A Partitioning-defective 94.0 0.26 9E-06 35.7 7.6 74 64-147 1-78 (85)
110 4a3p_A Ubiquitin carboxyl-term 94.0 0.16 5.5E-06 41.3 7.2 78 66-152 128-209 (217)
111 2dzk_A UBX domain-containing p 93.5 0.43 1.5E-05 35.0 8.2 72 65-151 13-90 (109)
112 1s3s_G P47 protein; AAA ATPase 93.3 0.27 9.3E-06 37.1 7.1 74 58-145 44-122 (127)
113 3ivf_A Talin-1; FERM domain, c 92.7 0.28 9.5E-06 42.1 7.2 74 66-152 6-85 (371)
114 3jyu_A Ubiquitin carboxyl-term 92.3 0.35 1.2E-05 39.7 6.9 64 80-152 158-221 (231)
115 1wj4_A KIAA0794 protein; UBX d 91.6 0.74 2.5E-05 34.7 7.5 73 63-151 41-119 (124)
116 1vjk_A Molybdopterin convertin 88.7 2.4 8.2E-05 29.9 7.8 78 63-153 7-96 (98)
117 3ix6_A TS, tsase, thymidylate 88.1 0.094 3.2E-06 46.7 0.0 77 61-154 17-95 (360)
118 2l76_A Nfatc2-interacting prot 86.9 7 0.00024 28.7 9.5 73 60-149 16-90 (95)
119 3po0_A Small archaeal modifier 86.8 0.91 3.1E-05 31.2 4.5 62 79-153 23-87 (89)
120 3uf8_A Ubiquitin-like protein 84.5 3.1 0.00011 33.4 7.2 75 61-152 17-93 (209)
121 4da1_A Protein phosphatase 1K, 83.8 0.21 7.2E-06 43.3 0.0 76 61-153 26-103 (389)
122 1h4r_A Merlin; FERM, neurofibr 82.7 6.6 0.00023 32.5 8.8 79 60-153 17-100 (314)
123 3rpf_C Molybdopterin convertin 82.5 3.5 0.00012 27.5 5.8 59 77-154 15-73 (74)
124 4e71_A Plexin-B2, MM1; transme 81.7 8.5 0.00029 28.9 8.2 89 64-152 10-111 (111)
125 1tyg_B YJBS; alpha beta barrel 81.4 3.3 0.00011 29.5 5.6 65 65-153 20-85 (87)
126 1ryj_A Unknown; beta/alpha pro 80.4 3.5 0.00012 27.5 5.2 64 65-153 4-68 (70)
127 2d9p_A Polyadenylate-binding p 79.5 4.9 0.00017 27.2 5.8 54 42-96 20-75 (103)
128 1ef1_A Moesin; membrane, FERM 79.4 8.3 0.00029 31.4 8.2 75 65-154 1-81 (294)
129 2kmm_A Guanosine-3',5'-BIS(dip 79.3 6.7 0.00023 25.4 6.2 65 66-153 1-65 (73)
130 1f0z_A THis protein; ubiquitin 77.8 2.7 9.4E-05 27.5 3.9 60 73-153 5-64 (66)
131 2daj_A KIAA0977 protein, COBL- 77.5 5.2 0.00018 29.3 5.6 70 64-151 9-82 (91)
132 2i1j_A Moesin; FERM, coiled-co 77.4 7.7 0.00026 35.8 8.1 78 63-155 2-85 (575)
133 3qij_A Protein 4.1; cytoskelet 76.4 6.6 0.00022 32.7 6.8 77 62-152 14-96 (296)
134 3au4_A Myosin-X; protein-prote 75.5 18 0.00061 32.5 9.8 51 47-100 201-253 (555)
135 2dgv_A HnRNP M, heterogeneous 75.4 10 0.00036 24.8 6.4 55 42-97 13-69 (92)
136 2l52_A Methanosarcina acetivor 74.8 5.6 0.00019 28.2 5.2 79 65-153 3-97 (99)
137 3ivf_A Talin-1; FERM domain, c 74.6 15 0.00053 31.1 8.8 89 50-152 67-168 (371)
138 3bs9_A Nucleolysin TIA-1 isofo 73.3 12 0.00042 24.1 6.3 55 42-97 11-69 (87)
139 2r2o_A Plexin-B1; effector dom 73.2 17 0.0006 28.3 8.0 91 64-154 23-131 (138)
140 2g1e_A Hypothetical protein TA 71.4 7 0.00024 26.4 4.8 65 79-153 20-88 (90)
141 1p9y_A Trigger factor, TF; alp 70.7 5.5 0.00019 29.4 4.4 39 63-101 1-39 (121)
142 2dgo_A Cytotoxic granule-assoc 70.3 14 0.00047 25.4 6.3 54 42-96 20-77 (115)
143 2dhg_A TRNA selenocysteine ass 70.1 15 0.00051 24.7 6.3 55 42-96 14-71 (104)
144 3dwg_C 9.5 kDa culture filtrat 69.8 6.1 0.00021 27.2 4.3 63 82-153 24-91 (93)
145 3h6n_A Plexin-D1; structural g 68.5 38 0.0013 26.0 8.9 90 65-154 4-107 (127)
146 2cpz_A CUG triplet repeat RNA- 67.2 16 0.00053 25.2 6.0 54 42-96 30-87 (115)
147 1fm0_D Molybdopterin convertin 65.6 9 0.00031 25.4 4.3 56 81-153 23-79 (81)
148 2do0_A HnRNP M, heterogeneous 65.2 19 0.00065 24.6 6.1 54 42-96 20-76 (114)
149 4fxv_A ELAV-like protein 1; RN 65.0 20 0.00069 24.6 6.2 54 42-96 24-81 (99)
150 2q5w_D Molybdopterin convertin 63.9 7.7 0.00026 25.5 3.7 55 79-153 21-75 (77)
151 2qjl_A URM1, ubiquitin-related 63.9 15 0.0005 25.8 5.4 64 79-153 25-97 (99)
152 2do4_A Squamous cell carcinoma 63.8 22 0.00074 23.8 6.1 55 42-97 22-79 (100)
153 2cq0_A Eukaryotic translation 63.1 18 0.0006 24.3 5.6 55 41-96 19-77 (103)
154 4e74_A Plexin-A4; RBD, structu 63.0 36 0.0012 25.6 7.7 89 64-152 12-115 (117)
155 4f25_A Polyadenylate-binding p 62.4 21 0.00071 24.9 6.0 55 42-97 10-66 (115)
156 2dnh_A Bruno-like 5, RNA bindi 61.6 24 0.00083 23.6 6.1 54 42-96 20-76 (105)
157 3ulh_A THO complex subunit 4; 61.0 27 0.00091 23.5 6.2 54 42-96 34-90 (107)
158 1x4c_A Splicing factor, argini 60.3 18 0.00062 24.8 5.3 51 42-96 20-70 (108)
159 2fc8_A NCL protein; structure 59.8 20 0.00068 23.9 5.3 51 42-96 20-74 (102)
160 2cpf_A RNA binding motif prote 59.6 22 0.00076 23.5 5.5 54 42-96 10-70 (98)
161 2v1y_A Phosphatidylinositol-4, 59.1 37 0.0013 25.2 7.1 77 62-141 16-95 (108)
162 2cq3_A RNA-binding protein 9; 58.2 24 0.00083 23.6 5.6 54 42-96 20-75 (103)
163 3p5t_L Cleavage and polyadenyl 57.1 34 0.0012 22.5 6.1 55 42-97 6-66 (90)
164 1x4e_A RNA binding motif, sing 56.7 22 0.00074 22.9 4.9 54 42-96 10-67 (85)
165 2e5g_A U6 snRNA-specific termi 55.6 22 0.00077 23.5 5.0 51 42-94 13-63 (94)
166 1wgk_A Riken cDNA 2900073H19 p 55.2 19 0.00065 26.5 4.9 78 64-154 10-107 (114)
167 2dnz_A Probable RNA-binding pr 55.0 31 0.001 22.6 5.6 54 42-96 10-67 (95)
168 1p1t_A Cleavage stimulation fa 54.5 33 0.0011 22.8 5.7 54 42-96 13-70 (104)
169 3md1_A Nuclear and cytoplasmic 54.0 39 0.0013 21.4 6.2 54 42-96 6-63 (83)
170 3r27_A HnRNP L, heterogeneous 53.8 45 0.0015 23.8 6.6 52 43-97 27-78 (100)
171 4a6q_A Histone deacetylase com 53.4 33 0.0011 26.8 6.1 64 82-147 62-134 (143)
172 3pvl_A Myosin VIIA isoform 1; 53.2 26 0.00087 32.9 6.5 49 48-99 249-299 (655)
173 3ex7_B RNA-binding protein 8A; 53.1 22 0.00074 24.8 4.8 54 42-96 27-84 (126)
174 2div_A TRNA selenocysteine ass 52.5 46 0.0016 21.9 6.2 54 42-96 14-72 (99)
175 2la6_A RNA-binding protein FUS 52.2 46 0.0016 22.1 6.2 54 42-96 18-83 (99)
176 1fxl_A Paraneoplastic encephal 51.7 44 0.0015 23.4 6.3 54 42-96 7-64 (167)
177 2cph_A RNA binding motif prote 51.6 23 0.0008 23.7 4.6 54 42-96 20-78 (107)
178 1whw_A Hypothetical protein ri 51.2 26 0.00089 23.2 4.7 54 42-96 13-70 (99)
179 1why_A Hypothetical protein ri 51.0 50 0.0017 21.8 6.3 53 42-97 22-74 (97)
180 3ucg_A Polyadenylate-binding p 50.3 26 0.0009 22.6 4.5 51 42-93 11-65 (89)
181 3onh_A Ubiquitin-activating en 49.9 34 0.0012 26.3 5.6 60 83-150 19-78 (127)
182 1h2v_Z 20 kDa nuclear CAP bind 49.7 47 0.0016 24.1 6.3 54 42-96 44-101 (156)
183 2jrh_A Mitogen-activated prote 49.5 34 0.0012 25.1 5.3 47 45-95 20-66 (94)
184 1x5s_A Cold-inducible RNA-bind 48.9 29 0.001 23.1 4.7 54 42-96 17-74 (102)
185 2cqd_A RNA-binding region cont 48.7 25 0.00085 24.2 4.4 53 42-95 22-78 (116)
186 1whx_A Hypothetical protein ri 48.7 41 0.0014 23.3 5.6 53 42-97 15-67 (111)
187 2x1f_A MRNA 3'-END-processing 48.2 32 0.0011 22.7 4.8 54 42-96 7-64 (96)
188 2cu3_A Unknown function protei 47.7 41 0.0014 21.6 5.1 60 72-153 3-62 (64)
189 2cu1_A Mitogen-activated prote 47.4 21 0.00071 26.7 3.9 48 45-96 24-71 (103)
190 2fy1_A RNA-binding motif prote 46.9 44 0.0015 23.3 5.6 53 42-95 12-67 (116)
191 1x4a_A Splicing factor, argini 46.5 39 0.0013 22.8 5.2 53 42-96 27-81 (109)
192 3beg_B Splicing factor, argini 46.3 22 0.00075 24.8 3.9 52 42-97 21-72 (115)
193 2hvz_A Splicing factor, argini 46.2 39 0.0013 22.4 5.0 52 42-96 5-57 (101)
194 3lqv_A PRE-mRNA branch site pr 46.1 41 0.0014 22.9 5.2 54 42-97 13-68 (115)
195 1x5u_A Splicing factor 3B subu 46.0 36 0.0012 22.7 4.8 53 42-95 20-76 (105)
196 1l3k_A Heterogeneous nuclear r 46.0 53 0.0018 23.8 6.1 54 41-95 17-74 (196)
197 2kxn_B Transformer-2 protein h 45.1 47 0.0016 23.8 5.6 55 42-97 51-109 (129)
198 3ig3_A Plxna3 protein; plexin 44.8 1.3E+02 0.0043 28.8 9.7 91 63-153 231-336 (627)
199 1x4g_A Nucleolysin TIAR; struc 44.8 65 0.0022 21.8 6.1 52 42-96 30-81 (109)
200 1x4h_A RNA-binding protein 28; 44.1 37 0.0013 22.9 4.7 55 42-97 20-78 (111)
201 3hvz_A Uncharacterized protein 44.0 29 0.00099 23.9 4.1 31 67-97 7-37 (78)
202 1l3k_A Heterogeneous nuclear r 43.7 58 0.002 23.6 6.0 53 42-95 109-165 (196)
203 2c60_A Human mitogen-activated 43.4 40 0.0014 25.4 5.0 48 44-95 46-93 (111)
204 3mdf_A Peptidyl-prolyl CIS-tra 43.3 48 0.0017 21.0 5.0 54 42-96 12-69 (85)
205 2ywk_A Putative RNA-binding pr 43.2 66 0.0023 20.9 5.8 54 42-96 21-77 (95)
206 2dnp_A RNA-binding protein 14; 43.1 37 0.0013 22.1 4.4 50 42-96 14-63 (90)
207 3nmr_A Cugbp ELAV-like family 42.3 73 0.0025 22.5 6.2 55 42-97 100-157 (175)
208 2cq1_A PTB-like protein L; RRM 41.9 77 0.0026 22.0 6.2 52 42-96 20-71 (101)
209 4b6w_A Tubulin-specific chaper 41.8 18 0.00062 25.0 2.7 44 44-87 20-68 (86)
210 1wi8_A EIF-4B, eukaryotic tran 41.6 34 0.0011 23.0 4.1 50 42-93 20-74 (104)
211 2dh8_A DAZ-associated protein 41.5 70 0.0024 21.3 5.8 53 42-95 21-77 (105)
212 2g4b_A Splicing factor U2AF 65 41.5 50 0.0017 23.4 5.3 54 42-96 99-156 (172)
213 2cqi_A Nucleolysin TIAR; RNA r 41.2 54 0.0018 21.8 5.1 54 42-96 20-75 (103)
214 3hm6_X Plexin-B1; structural g 41.2 61 0.0021 31.0 7.0 92 63-154 255-364 (644)
215 2zjd_A Microtubule-associated 41.2 84 0.0029 23.8 6.6 46 57-102 27-81 (130)
216 2cqc_A Arginine/serine-rich sp 40.8 72 0.0025 20.6 6.1 54 42-96 20-77 (95)
217 1wez_A HnRNP H', FTP-3, hetero 40.7 34 0.0012 23.5 4.1 51 42-94 20-73 (102)
218 2dnm_A SRP46 splicing factor; 40.3 23 0.00077 23.8 3.0 54 42-96 18-75 (103)
219 1s79_A Lupus LA protein; RRM, 40.2 60 0.002 22.4 5.3 52 42-94 16-70 (103)
220 2npt_B Mitogen-activated prote 40.1 48 0.0016 24.6 4.9 47 45-95 36-82 (100)
221 2mss_A Protein (musashi1); RNA 40.0 31 0.0011 21.6 3.5 52 42-94 4-59 (75)
222 3coq_A Regulatory protein GAL4 39.9 11 0.00036 25.4 1.3 37 23-59 51-87 (89)
223 2dgw_A Probable RNA-binding pr 39.9 75 0.0026 20.6 5.6 51 42-94 15-68 (91)
224 1x5t_A Splicing factor 3B subu 39.8 31 0.0011 22.6 3.7 54 42-96 10-68 (96)
225 2ek1_A RNA-binding protein 12; 39.5 60 0.0021 21.1 5.1 54 42-96 20-77 (95)
226 2kj6_A Tubulin folding cofacto 39.1 26 0.00089 24.8 3.3 46 43-88 31-81 (97)
227 1rk8_A CG8781-PA, CG8781-PA pr 38.5 84 0.0029 23.1 6.2 53 43-96 78-134 (165)
228 1vd2_A Protein kinase C, IOTA 38.2 64 0.0022 23.0 5.3 36 63-99 4-41 (89)
229 2err_A Ataxin-2-binding protei 38.1 34 0.0012 23.5 3.7 54 42-96 34-89 (109)
230 2l32_A Small archaeal modifier 37.9 24 0.00083 23.9 2.9 63 66-155 1-66 (74)
231 2cqg_A TDP-43, TAR DNA-binding 37.4 88 0.003 20.7 6.1 53 42-95 20-76 (103)
232 3md3_A Nuclear and cytoplasmic 37.2 46 0.0016 23.3 4.4 55 42-97 5-62 (166)
233 2jwn_A Embryonic polyadenylate 36.6 50 0.0017 22.8 4.5 51 42-93 41-95 (124)
234 2rs2_A Musashi-1, RNA-binding 36.5 57 0.002 22.4 4.8 53 42-95 30-86 (109)
235 2cqp_A RNA-binding protein 12; 36.2 65 0.0022 21.1 4.8 54 42-96 20-77 (98)
236 1fxl_A Paraneoplastic encephal 36.1 1.1E+02 0.0037 21.3 6.3 55 42-97 93-151 (167)
237 2kn4_A Immunoglobulin G-bindin 36.0 42 0.0014 24.2 4.1 53 42-95 75-131 (158)
238 1sjq_A Polypyrimidine tract-bi 35.9 1E+02 0.0035 21.9 6.2 52 42-96 21-72 (105)
239 3h9d_A ATG8, microtubule-assoc 35.8 32 0.0011 25.7 3.5 44 45-93 54-101 (119)
240 2k7r_A Primosomal protein DNAI 35.8 35 0.0012 24.4 3.5 30 26-55 18-51 (106)
241 2cqb_A Peptidyl-prolyl CIS-tra 35.6 53 0.0018 21.7 4.3 54 42-96 17-74 (102)
242 1oey_A P67-PHOX, neutrophil cy 35.4 62 0.0021 22.9 4.7 35 65-99 5-39 (83)
243 1uaw_A Mouse-musashi-1; RNP-ty 35.2 42 0.0014 20.9 3.6 54 42-96 5-62 (77)
244 3n9u_C Cleavage and polyadenyl 34.6 1E+02 0.0035 22.9 6.2 54 42-96 60-119 (156)
245 1rws_A Hypothetical protein PF 34.5 12 0.00041 25.2 0.8 55 74-153 21-75 (77)
246 2dgs_A DAZ-associated protein 34.3 69 0.0024 21.1 4.7 52 42-94 15-70 (99)
247 2lxi_A RNA-binding protein 10; 34.3 18 0.00062 24.3 1.7 55 41-96 5-64 (91)
248 1q1o_A Cell division control p 33.9 82 0.0028 23.0 5.3 37 64-100 4-49 (98)
249 2dgt_A RNA-binding protein 30; 33.8 77 0.0026 20.6 4.9 50 42-96 15-64 (92)
250 2ad9_A Polypyrimidine tract-bi 33.7 90 0.0031 22.7 5.6 52 42-96 36-87 (119)
251 1b7f_A Protein (SXL-lethal pro 33.7 1.2E+02 0.004 21.3 6.1 55 42-97 94-152 (168)
252 2jvr_A Nucleolar protein 3; RN 33.7 39 0.0013 24.0 3.6 53 43-96 34-87 (111)
253 3s8s_A Histone-lysine N-methyl 33.6 1.2E+02 0.0041 21.0 6.1 55 42-97 11-69 (110)
254 1v8c_A MOAD related protein; r 33.6 78 0.0027 24.5 5.5 66 79-154 19-86 (168)
255 2qfj_A FBP-interacting repress 33.5 1.1E+02 0.0038 22.5 6.2 55 42-97 130-188 (216)
256 4f02_A Polyadenylate-binding p 33.2 97 0.0033 23.5 6.0 54 42-96 108-163 (213)
257 2jrs_A RNA-binding protein 39; 33.2 1.1E+02 0.0039 20.8 5.9 54 42-96 31-88 (108)
258 2ytc_A PRE-mRNA-splicing facto 33.2 93 0.0032 19.7 6.1 52 42-96 17-68 (85)
259 2kkc_A Sequestosome-1; P62, PB 33.1 69 0.0024 23.4 4.8 14 85-98 43-56 (102)
260 1wex_A Hypothetical protein (r 33.0 1.2E+02 0.0041 21.0 6.4 51 43-96 21-71 (104)
261 3s7r_A Heterogeneous nuclear r 32.8 96 0.0033 19.7 5.6 53 42-95 16-72 (87)
262 2dgu_A Heterogeneous nuclear r 32.5 67 0.0023 21.4 4.5 50 42-96 16-65 (103)
263 2voo_A Lupus LA protein; RNA-b 32.4 97 0.0033 23.7 5.9 53 42-95 114-169 (193)
264 3nmr_A Cugbp ELAV-like family 32.4 1.2E+02 0.004 21.3 6.0 55 42-97 8-68 (175)
265 1x4b_A Heterogeneous nuclear r 32.1 77 0.0026 21.6 4.8 54 41-95 31-88 (116)
266 2dgp_A Bruno-like 4, RNA bindi 32.1 54 0.0018 21.9 3.9 55 42-97 18-76 (106)
267 1x5o_A RNA binding motif, sing 31.7 1.2E+02 0.004 20.4 5.8 54 42-96 30-86 (114)
268 2lkz_A RNA-binding protein 5; 31.7 31 0.0011 23.8 2.6 56 41-97 13-74 (95)
269 2kjr_A CG11242; UBL, ubiquitin 31.7 54 0.0019 22.9 4.0 44 44-88 33-81 (95)
270 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.5 76 0.0026 22.0 4.8 54 42-96 68-125 (140)
271 2dnq_A RNA-binding protein 4B; 31.5 1.1E+02 0.0036 19.8 5.3 49 42-96 13-62 (90)
272 1t11_A Trigger factor, TF; hel 31.4 50 0.0017 28.7 4.5 39 63-101 1-39 (392)
273 4a8x_A RNA-binding protein wit 31.3 72 0.0025 20.2 4.3 54 42-96 9-67 (88)
274 2krb_A Eukaryotic translation 30.8 49 0.0017 21.1 3.4 53 42-95 6-66 (81)
275 2cpe_A RNA-binding protein EWS 30.7 53 0.0018 22.2 3.7 54 42-96 20-85 (113)
276 2e5h_A Zinc finger CCHC-type a 30.4 97 0.0033 20.0 4.9 54 42-96 21-78 (94)
277 2k5p_A THis protein, thiamine- 30.3 45 0.0015 22.7 3.2 71 66-160 1-73 (78)
278 2cjk_A Nuclear polyadenylated 30.2 62 0.0021 22.8 4.1 53 42-95 8-64 (167)
279 3pgw_S U1-70K; protein-RNA com 30.1 80 0.0027 27.7 5.6 54 42-96 107-164 (437)
280 1t0y_A Tubulin folding cofacto 29.7 28 0.00096 25.3 2.2 45 43-87 22-71 (122)
281 2dha_A FLJ20171 protein; RRM d 29.6 1.2E+02 0.0041 21.8 5.7 52 42-95 28-87 (123)
282 2khc_A Testis-specific RNP-typ 29.5 56 0.0019 22.3 3.7 53 42-95 45-101 (118)
283 2f3j_A RNA and export factor b 29.4 72 0.0025 24.2 4.6 54 42-96 93-149 (177)
284 2dng_A Eukaryotic translation 28.8 1.1E+02 0.0039 20.2 5.1 50 42-93 20-73 (103)
285 3q2s_C Cleavage and polyadenyl 28.7 69 0.0024 25.3 4.6 55 41-96 72-132 (229)
286 2qfj_A FBP-interacting repress 28.6 1E+02 0.0034 22.7 5.2 54 42-96 33-90 (216)
287 1b7f_A Protein (SXL-lethal pro 28.3 89 0.0031 21.9 4.7 54 42-96 8-65 (168)
288 2e5j_A Methenyltetrahydrofolat 28.1 91 0.0031 20.5 4.5 53 42-96 24-76 (97)
289 3idw_A Actin cytoskeleton-regu 28.1 1 3.4E-05 31.9 -5.6 28 131-158 40-67 (72)
290 2zpm_A Regulator of sigma E pr 28.0 1E+02 0.0034 20.1 4.7 38 39-78 26-65 (91)
291 3u52_E Phenol hydroxylase comp 27.9 2E+02 0.0068 21.8 7.4 81 61-149 19-107 (119)
292 2cpj_A Non-POU domain-containi 27.8 1.2E+02 0.004 20.0 5.0 52 42-96 20-71 (99)
293 2eki_A DRG 1, developmentally- 27.7 78 0.0027 22.9 4.2 57 79-151 30-87 (93)
294 1qbe_A Bacteriophage Q beta ca 27.6 16 0.00055 27.8 0.6 27 17-44 97-123 (132)
295 1oo0_B CG8781-PA, drosophila Y 27.3 1.1E+02 0.0036 20.5 4.8 54 42-96 31-88 (110)
296 2fc9_A NCL protein; structure 27.3 81 0.0028 20.8 4.1 51 42-96 20-73 (101)
297 2dgx_A KIAA0430 protein; RRM d 27.1 93 0.0032 20.5 4.4 55 42-97 14-73 (96)
298 2db1_A Heterogeneous nuclear r 26.8 97 0.0033 21.5 4.6 51 42-94 22-79 (118)
299 2cpx_A Hypothetical protein FL 26.4 78 0.0027 21.4 4.0 52 42-96 30-87 (115)
300 2yh0_A Splicing factor U2AF 65 26.4 1E+02 0.0035 22.3 4.9 54 42-96 119-176 (198)
301 1x4d_A Matrin 3; structural ge 26.3 1.2E+02 0.004 21.2 5.0 53 42-97 20-73 (102)
302 2hgl_A HNRPF protein, heteroge 25.9 1.1E+02 0.0037 22.4 5.0 51 42-94 49-106 (136)
303 1u6f_A Tcubp1, RNA-binding pro 25.8 1.5E+02 0.0051 20.6 5.6 54 42-96 47-104 (139)
304 2vsp_A PDZ domain-containing p 25.8 62 0.0021 21.3 3.3 38 38-76 48-88 (91)
305 3md3_A Nuclear and cytoplasmic 25.6 1.7E+02 0.0057 20.2 6.2 55 42-97 92-150 (166)
306 2la4_A Nuclear and cytoplasmic 25.1 1.5E+02 0.0051 19.4 5.9 52 42-96 32-83 (101)
307 3m95_A Autophagy related prote 24.8 1.2E+02 0.0042 22.8 5.1 42 61-102 32-81 (125)
308 2e44_A Insulin-like growth fac 24.4 99 0.0034 20.1 4.1 52 42-96 20-74 (96)
309 1wg5_A Heterogeneous nuclear r 24.3 70 0.0024 21.6 3.4 54 41-95 19-76 (104)
310 4f02_A Polyadenylate-binding p 24.3 1.9E+02 0.0066 21.7 6.3 54 42-96 20-77 (213)
311 2bb6_A TCII, TC II, transcobal 24.0 1.7E+02 0.0059 26.2 6.7 81 66-149 319-410 (414)
312 2cpd_A Apobec-1 stimulating pr 23.8 1.6E+02 0.0054 19.3 5.2 50 42-96 20-71 (99)
313 2jvo_A Nucleolar protein 3; nu 23.6 1.7E+02 0.0058 19.9 5.4 50 42-96 36-85 (108)
314 2i1s_A Hypothetical protein; m 23.6 86 0.0029 24.4 4.2 34 65-98 8-46 (188)
315 2kep_A General secretion pathw 23.5 53 0.0018 24.0 2.7 29 15-50 29-70 (110)
316 2kt5_A RNA and export factor-b 23.2 1.5E+02 0.0052 20.3 5.1 55 42-97 40-97 (124)
317 3u7z_A Putative metal binding 23.1 60 0.0021 23.6 2.9 85 61-150 4-97 (101)
318 2r2q_A Gamma-aminobutyric acid 22.6 1.4E+02 0.0048 21.5 4.9 45 58-102 20-72 (110)
319 3khf_A Microtubule-associated 22.6 1.1E+02 0.0036 20.4 4.0 39 38-77 55-96 (99)
320 2nsc_A Trigger factor, TF; cha 22.4 96 0.0033 22.0 3.9 36 66-101 1-36 (109)
321 2dnl_A Cytoplasmic polyadenyla 22.3 97 0.0033 21.2 3.9 53 42-96 13-72 (114)
322 2a2l_A Unknown; structural gen 22.2 1.1E+02 0.0036 23.1 4.3 50 49-98 12-69 (145)
323 3kuz_A Plexin-C1; structural g 21.9 53 0.0018 25.2 2.5 87 64-150 18-125 (126)
324 3sde_A Paraspeckle component 1 21.7 2E+02 0.0067 22.5 6.0 54 42-96 101-157 (261)
325 2ylm_A Ubiquitin carboxyl-term 21.2 59 0.002 29.6 3.1 66 79-153 152-219 (530)
326 1eo6_A GATE-16, golgi-associat 21.2 1.5E+02 0.0051 21.7 4.8 45 58-102 21-73 (117)
327 2j76_E EIF-4B, EIF4B, eukaryot 21.0 72 0.0025 21.3 2.9 50 42-93 24-78 (100)
328 1p27_B RNA-binding protein 8A; 21.0 1.9E+02 0.0064 19.1 5.7 54 42-96 28-85 (106)
329 3pgw_A U1-A; protein-RNA compl 20.7 1.6E+02 0.0055 22.9 5.3 54 42-96 14-72 (282)
330 2ej7_A HCG3 gene; HCG3 protein 20.6 61 0.0021 21.4 2.4 26 79-104 16-42 (82)
331 1wf0_A TDP-43, TAR DNA-binding 20.4 50 0.0017 21.4 1.9 30 42-72 10-39 (88)
332 3h9d_A ATG8, microtubule-assoc 20.3 1.9E+02 0.0064 21.5 5.2 44 59-102 25-76 (119)
333 1ip9_A BEM1 protein; ubiquitin 20.2 1.8E+02 0.0061 20.8 4.9 35 64-99 11-47 (85)
334 1hdj_A Human HSP40, HDJ-1; mol 20.0 67 0.0023 21.0 2.5 26 79-104 10-36 (77)
No 1
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.96 E-value=2.5e-30 Score=195.14 Aligned_cols=95 Identities=36% Similarity=0.597 Sum_probs=91.1
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
.|+||+|+|.+++|+.| +|++++||.|||++|+.++..+|++|+|+++|||+|+|.+|||.|.|+.|.||+++|.|||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 58999999999999999 8899999999999999999988999999999999999999999999998889999999999
Q ss_pred CccCCEEEEEeeeecCC
Q 030498 140 VRNNSQVQFVPFVLSKG 156 (176)
Q Consensus 140 Ikngd~L~Fk~~l~~~~ 156 (176)
|+||++|+|+.|++.++
T Consensus 84 I~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CCSSEEEEEEECSCSCC
T ss_pred CCCCCEEEEEehhccCC
Confidence 99999999999998874
No 2
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=7.4e-12 Score=86.32 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=63.7
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
|..|.|+|...+|+.+ .|++++||.|||..|+......+++| .|.|.+. .++|+.+|.+|||
T Consensus 1 gs~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q---------------rL~~~g~-~L~d~~tL~~~~i 64 (85)
T 3mtn_B 1 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYNI 64 (85)
T ss_dssp --CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTE-ECCTTSBTGGGTC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHE---------------EEEECCE-ECCCCCCHHHcCC
Confidence 6789999999999998 88999999999999999986544433 5678886 5567899999999
Q ss_pred ccCCEEEEEeeeec
Q 030498 141 RNNSQVQFVPFVLS 154 (176)
Q Consensus 141 kngd~L~Fk~~l~~ 154 (176)
++|++|+...++++
T Consensus 65 ~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 65 QKWSTLFLLLRLRG 78 (85)
T ss_dssp CTTCEEEEECCCCC
T ss_pred CCCCEEEEEEECcC
Confidence 99999999998865
No 3
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=5.2e-12 Score=87.30 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=62.1
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
|..|.|+|...+|+.+ .|++++||.+||.+|+......+.++ .|.|.+. .++|+.+|.+|||
T Consensus 1 gs~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~q---------------rL~~~g~-~L~d~~tL~~~~i 64 (85)
T 3n3k_B 1 GSHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYNI 64 (85)
T ss_dssp ---CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETBE-ECCTTCBTTTTTC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHE---------------EEEECCe-ECCCCCCHHHCCC
Confidence 5689999999999988 88999999999999999886544433 5778886 4567789999999
Q ss_pred ccCCEEEEEeeeec
Q 030498 141 RNNSQVQFVPFVLS 154 (176)
Q Consensus 141 kngd~L~Fk~~l~~ 154 (176)
++|++|++..++++
T Consensus 65 ~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 65 HNHSALYLLLKLRG 78 (85)
T ss_dssp CTTCEEEEEECCC-
T ss_pred CCCCEEEEEEeccC
Confidence 99999999998865
No 4
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.29 E-value=1.5e-11 Score=87.44 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=65.4
Q ss_pred hccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 60 LEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 60 le~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
-+.+..|.|+|...+|+.+ .|..++||.|||..|+......+.+| .|.|.|+ .++|+.+|.+
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk-~L~D~~tL~~ 75 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSD 75 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTE-ECCTTCBTGG
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhE---------------EEEECCe-ECCCcCcHHH
Confidence 3456679999999999998 88999999999999999886544433 5778886 5567899999
Q ss_pred cCCccCCEEEEEeeee
Q 030498 138 CGVRNNSQVQFVPFVL 153 (176)
Q Consensus 138 yGIkngd~L~Fk~~l~ 153 (176)
|||++|++|++.-|++
T Consensus 76 ~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 76 YNIQKESTLHLVLRLR 91 (91)
T ss_dssp GTCCTTCEEEEECCCC
T ss_pred CCCCCCCEEEEEEecC
Confidence 9999999999988764
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.29 E-value=1.9e-11 Score=84.09 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=63.7
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|.|+|...+|+.+ .|++++||.+||..|+......+.+| .|.|.|. .++|+.+|.+|||+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rL~~~G~-~L~d~~tL~~~~i~ 66 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF---------------WLTFEGK-PLEDQLPLGEYGLK 66 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGE---------------EEEETTE-ECCTTSBGGGGTCC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHE---------------EEEECCE-ECCCCCcHHHCCCC
Confidence 469999999999998 88999999999999999875544432 5778886 55678999999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+|++|++.-|+++
T Consensus 67 ~~~~l~l~~rl~G 79 (79)
T 3phx_B 67 PLSTVFMNLRLRG 79 (79)
T ss_dssp TTCEEEEEECCBC
T ss_pred CCCEEEEEEecCC
Confidence 9999999988753
No 6
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.28 E-value=1.6e-11 Score=82.61 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=60.8
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|+|+|...+|+.+ .|++++||.+||..|+......+.++ .|.|.++. ++|+.+|.+|||++|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q---------------~L~~~g~~-L~d~~tL~~~~i~~g 64 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ---------------RLIYSGKQ-MNDEKTAADYKILGG 64 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEE-CCTTSBGGGGTCCTT
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHE---------------EEEECCEE-CCCCCcHHHcCCCCC
Confidence 8899999999988 88999999999999999875444322 57788874 567889999999999
Q ss_pred CEEEEEeeeec
Q 030498 144 SQVQFVPFVLS 154 (176)
Q Consensus 144 d~L~Fk~~l~~ 154 (176)
++|++..++.+
T Consensus 65 ~~i~l~~~~~G 75 (76)
T 1ndd_A 65 SVLHLVLALRG 75 (76)
T ss_dssp CEEEEEECCC-
T ss_pred CEEEEEEeCCC
Confidence 99999988753
No 7
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.28 E-value=1.7e-11 Score=85.33 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=65.1
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
.+..|.|+|...+|+.+ .|++++||.+||..|+......+.+| .|.|.+. .++|+.+|.+||
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rL~~~G~-~L~d~~tL~~~~ 72 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ---------------RLIYSGK-QMNDEKTAADYK 72 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------CEEETTE-ECCTTSBGGGGT
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHE---------------EEEECCe-ECCCCCcHHHcC
Confidence 45679999999999998 88999999999999999876544433 5778886 566789999999
Q ss_pred CccCCEEEEEeeeec
Q 030498 140 VRNNSQVQFVPFVLS 154 (176)
Q Consensus 140 Ikngd~L~Fk~~l~~ 154 (176)
|++|++|++.-++++
T Consensus 73 i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 73 ILGGSVLHLVLRLRG 87 (88)
T ss_dssp CCTTCEEEECCCCCC
T ss_pred CCCCCEEEEEEeCCC
Confidence 999999999988764
No 8
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.27 E-value=2.1e-11 Score=82.03 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=61.1
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|+|+|...+|+.+ .|++++||.|||..|+......+.+ ..|.|.+.. ++|+.+|.+|||++|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~---------------q~L~~~g~~-L~d~~tL~~~~i~~g 64 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---------------QRLIFAGKQ-LEDGRTLSDYNIQRE 64 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGG---------------EEEEETTEE-CCTTCBTGGGTCCTT
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHH---------------eEEEECCeE-CCCCCcHHHcCCCCC
Confidence 8899999999988 8899999999999999987543332 257788874 567899999999999
Q ss_pred CEEEEEeeeec
Q 030498 144 SQVQFVPFVLS 154 (176)
Q Consensus 144 d~L~Fk~~l~~ 154 (176)
++|++..++.+
T Consensus 65 ~~i~l~~~~~G 75 (76)
T 3a9j_A 65 STLHLVLRLRG 75 (76)
T ss_dssp CEEEEEECCCC
T ss_pred CEEEEEEeCCC
Confidence 99999888753
No 9
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.6e-11 Score=88.85 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=63.8
Q ss_pred hccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 60 LEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 60 le~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
...+..|+|+|...+|+.+ .|.+++||.+||..|+......+.+| .|.|.++ .++|+.+|.+
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~ 80 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSD 80 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTE-ECCTTCBSGG
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHE---------------EEEECCE-ECCCCCcHHH
Confidence 3567789999999999998 88899999999999999986544433 5778886 4578889999
Q ss_pred cCCccCCEEEEEeeeec
Q 030498 138 CGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 138 yGIkngd~L~Fk~~l~~ 154 (176)
|||++|++|++..|+++
T Consensus 81 ~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 81 YNIQKESTLHLVLRLRG 97 (98)
T ss_dssp GTCCTTEEEEEECBCSC
T ss_pred CCCCCCCEEEEEEecCC
Confidence 99999999999988764
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.21 E-value=3.9e-11 Score=85.26 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=62.3
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|.|+|...+|+.+ .|++++||.+||..|+......+++| .|.|.|. .++|+.+|.+|||++|
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~~~i~~g 64 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ---------------RLIYSGK-QMNDEKTAADYKILGG 64 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTE-ECCTTSBTTTTTCCTT
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHE---------------EEEECCe-ECCCCCcHHHcCCCCC
Confidence 7899999999999 88999999999999999876444433 5778886 5677899999999999
Q ss_pred CEEEEEeeeecC
Q 030498 144 SQVQFVPFVLSK 155 (176)
Q Consensus 144 d~L~Fk~~l~~~ 155 (176)
++|+..-++++-
T Consensus 65 ~~l~l~~rl~Gg 76 (88)
T 4fbj_B 65 SVLHLVLALRGG 76 (88)
T ss_dssp CEEEEECBCC--
T ss_pred CEEEEEEECCCC
Confidence 999999988763
No 11
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.20 E-value=5.7e-11 Score=84.48 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=62.8
Q ss_pred ceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCcc
Q 030498 65 AMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 142 (176)
Q Consensus 65 Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkn 142 (176)
.|.|+|...+|+.+ .|+.++||.+||..|+..+...+.++ .|.|.+. .++|+.+|.+|||++
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~q---------------rL~~~G~-~L~d~~tL~~~~i~~ 64 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYNIQK 64 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTSBTGGGTCCT
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHE---------------EEEECCE-ECCCCCcHHHcCCCC
Confidence 38999999999998 88999999999999999886544432 5778886 456778999999999
Q ss_pred CCEEEEEeeeecC
Q 030498 143 NSQVQFVPFVLSK 155 (176)
Q Consensus 143 gd~L~Fk~~l~~~ 155 (176)
|++|++..++++-
T Consensus 65 ~~~i~l~~r~~gG 77 (96)
T 3k9o_B 65 ESTLHLVLRLRGY 77 (96)
T ss_dssp TCEEEEEECCCC-
T ss_pred CCEEEEEEEcCCC
Confidence 9999999998763
No 12
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=5.5e-11 Score=81.41 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=60.5
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|+|+|...+|+.+ .|++++||.+||..|+......+.++ .|.|.|+. ++|+.+|.+|||+
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~q---------------rL~~~gk~-L~d~~tL~~~~i~ 69 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQ---------------RLLFKGKA-LADGKRLSDYSIG 69 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTC---------------EEEETTEE-CCTTSBGGGGTCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHE---------------EEEECCeE-CCCCCcHHHcCCC
Confidence 459999999999988 88999999999999999875444322 57788874 5678899999999
Q ss_pred cCCEEEEEeee
Q 030498 142 NNSQVQFVPFV 152 (176)
Q Consensus 142 ngd~L~Fk~~l 152 (176)
+|++|++.-++
T Consensus 70 ~g~~i~l~~~~ 80 (81)
T 2dzi_A 70 PNSKLNLVVKP 80 (81)
T ss_dssp SSBCCEEECCC
T ss_pred CCCEEEEEEeC
Confidence 99999987664
No 13
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=7.1e-11 Score=83.90 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=59.6
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
=|.|.|.|...+|+.+ .|++++||.+||.+|+......++++ .|.|.+.. ++|+.+|.+|||
T Consensus 7 ~~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk~-L~D~~tL~~~gi 70 (88)
T 1sif_A 7 LQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQ---------------RLIFAGKQ-LEDGRTLSDYNI 70 (88)
T ss_dssp ---CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGC---------------EEEETTEE-CCTTSBSGGGTC
T ss_pred ccceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhE---------------EEEECCEE-CCCCCcHHHcCC
Confidence 3679999999999999 88999999999999999886544433 57788864 567899999999
Q ss_pred ccCCEEEEEeeeec
Q 030498 141 RNNSQVQFVPFVLS 154 (176)
Q Consensus 141 kngd~L~Fk~~l~~ 154 (176)
++|++|+...++.+
T Consensus 71 ~~g~~i~l~~r~~G 84 (88)
T 1sif_A 71 QKESTLHLVLRLRG 84 (88)
T ss_dssp CTTCEEEEEC----
T ss_pred CCCCEEEEEEeCCC
Confidence 99999999887764
No 14
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=7.8e-11 Score=82.21 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=63.1
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|+|+|...+|+.+ .|++++||.+||..|+......+++| .|.|.++ .++|+++|.+|||+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q---------------rL~~~Gk-~L~d~~tL~~~~i~ 69 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQ---------------QLEFQGQ-VLQDWLGLGIYGIQ 69 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTE---------------EEEETTE-ECCSSSBHHHHTCC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHE---------------EEEECCE-EccCCCCHHHCCCC
Confidence 359999999999988 88999999999999999875444322 5778886 45678999999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+|++|++..++.+
T Consensus 70 ~g~~i~l~~~~~G 82 (87)
T 1wh3_A 70 DSDTLILSKKKGS 82 (87)
T ss_dssp TTEEEEEEECSCC
T ss_pred CCCEEEEEEeccC
Confidence 9999999988764
No 15
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.17 E-value=1.2e-10 Score=82.87 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=62.4
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
+-.-|+|+|...+|+.+ .|++++||.+||..|+......+.+| .|.|.|+.+++|+.+|.+||
T Consensus 7 ~~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~lL~D~~tL~~y~ 71 (84)
T 2kk8_A 7 HHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQ---------------TLIVDGIVILREDLTVEQCQ 71 (84)
T ss_dssp CCCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGE---------------EEEETTEECCCSSSBHHHHT
T ss_pred ccCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHE---------------EEEECCEEecCCcCCHHHcC
Confidence 34679999999999999 88999999999999999986544433 57788875377889999999
Q ss_pred CccCCEEEEEe
Q 030498 140 VRNNSQVQFVP 150 (176)
Q Consensus 140 Ikngd~L~Fk~ 150 (176)
|++|++|+.+-
T Consensus 72 I~~gs~i~lv~ 82 (84)
T 2kk8_A 72 IVPTSDIQLEV 82 (84)
T ss_dssp CCTTSCEEEEE
T ss_pred CCCCCEEEEEE
Confidence 99999988764
No 16
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.17 E-value=4.8e-11 Score=88.71 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=64.8
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
...+|.|+|...+|+.+ .|.+++||.+||..|+......+.+| .|.|.++ +++|+.+|.+||
T Consensus 32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~~~g 95 (111)
T 3vdz_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYN 95 (111)
T ss_dssp GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTSBTTTTT
T ss_pred CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHE---------------EEEECCE-ECCCCCcHHHCC
Confidence 34569999999999998 88999999999999999885544433 5778886 556778999999
Q ss_pred CccCCEEEEEeeeec
Q 030498 140 VRNNSQVQFVPFVLS 154 (176)
Q Consensus 140 Ikngd~L~Fk~~l~~ 154 (176)
|++|++|++..|+++
T Consensus 96 I~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 96 IQKESTLHLVLRLRG 110 (111)
T ss_dssp CCTTCEEEEEECCCC
T ss_pred CCCCCEEEEEEecCC
Confidence 999999999988764
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=81.60 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=60.9
Q ss_pred hccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 60 LEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 60 le~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
++....|.|+|...+|+.+ .|.+++||.+||..|+......+.+| .|.|.|+ +++|+.+|.+
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~ 75 (88)
T 4eew_A 12 VEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ---------------RLIYQGR-VLQDDKKLQE 75 (88)
T ss_dssp ---CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE---------------EEEETTE-ECCTTSBGGG
T ss_pred ecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---------------EEEECCE-ECCCCCcHHH
Confidence 3556779999999999998 88999999999999999876544433 5778886 5677889999
Q ss_pred cCCccCCEEEEEee
Q 030498 138 CGVRNNSQVQFVPF 151 (176)
Q Consensus 138 yGIkngd~L~Fk~~ 151 (176)
||| +|++|+.+.|
T Consensus 76 ~~i-~g~~i~lv~R 88 (88)
T 4eew_A 76 YNV-GGKVIHLVER 88 (88)
T ss_dssp GTC-TTEEEEEEEC
T ss_pred cCC-CCcEEEEEEC
Confidence 999 9999988754
No 18
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=82.68 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=61.5
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|.|+|...+|+.+ .|++++||.+||..|+......+.+| .|.|.|. .++|+.+|.+|||+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk-~L~D~~tL~~~~I~ 66 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF---------------WLTFEGK-PLEDQLPLGEYGLK 66 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTE---------------EEESSSS-CCCTTSBHHHHHCS
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHE---------------EEEECCE-ECCCCCcHHHcCCC
Confidence 469999999999988 88999999999999999875544433 5778886 45778999999999
Q ss_pred cCCEEEEEeeeecCC
Q 030498 142 NNSQVQFVPFVLSKG 156 (176)
Q Consensus 142 ngd~L~Fk~~l~~~~ 156 (176)
+|++|++..+..+..
T Consensus 67 ~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 67 PLSTVFMNLRLRGGL 81 (88)
T ss_dssp TTCEEEEEEC-----
T ss_pred CCCEEEEEEEcCCCc
Confidence 999999998876643
No 19
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.14 E-value=1.9e-10 Score=78.02 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=57.6
Q ss_pred ceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCcc
Q 030498 65 AMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 142 (176)
Q Consensus 65 Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkn 142 (176)
+|+|+|.. +|+.+ .|++++||.+||..|+......+.++ .|.|.|. .++|+.+|.+|||++
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~q---------------rL~~~gk-~L~d~~tL~~~~i~~ 66 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQ---------------RLIYSGK-ILKDDQTVESYHIQD 66 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTSBTGGGTCCT
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHE---------------EEEECCe-EcCCCCCHHHcCCCC
Confidence 38999998 89888 88999999999999999875444432 5778886 456679999999999
Q ss_pred CCEEEEEee
Q 030498 143 NSQVQFVPF 151 (176)
Q Consensus 143 gd~L~Fk~~ 151 (176)
|++|+++.+
T Consensus 67 g~~i~l~~~ 75 (77)
T 2bwf_A 67 GHSVHLVKS 75 (77)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 999988753
No 20
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.13 E-value=1.9e-10 Score=82.70 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=61.3
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|+|+|...+|+.+ .|++++||.|||..|+......+.++ .|.|.|+. ++|+.+|.+|||++|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~q---------------rL~~~Gk~-L~D~~tL~~~gi~~g 64 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQ-LEDGRTLSDYNIQKE 64 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGE---------------EEEETTEE-CCTTSBTGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhE---------------EEEECCEE-CCCCCCHHHcCCCCC
Confidence 8999999999988 88999999999999999875544432 57788874 567899999999999
Q ss_pred CEEEEEeeeec
Q 030498 144 SQVQFVPFVLS 154 (176)
Q Consensus 144 d~L~Fk~~l~~ 154 (176)
++|++..++.+
T Consensus 65 ~~i~l~~~~~g 75 (98)
T 1yx5_B 65 STLHLVLRLRG 75 (98)
T ss_dssp CEEEEEECCCC
T ss_pred CEEEEEEeCCC
Confidence 99999888753
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.12 E-value=3.4e-10 Score=78.40 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=58.2
Q ss_pred ceEEEEEecCCcee--EecCcccHHHHHHHHHHHh--h-hhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 65 AMRISILKLDGTSF--AVMNSATVKDLKLAIKKKV--N-DMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 65 Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~--~-~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
.|+|+|...+|+.+ .|..++||.+||..|+..+ . ..+.+ ..|.|.|+ .++|+.+|.+||
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~---------------qrLi~~Gk-~L~D~~tL~~~~ 68 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG---------------QKLIYAGK-ILSDDVPIRDYR 68 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG---------------EEEEETTE-ECCTTSBGGGGC
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHH---------------eEEEECCE-ECcCCCCHHHcC
Confidence 59999999999988 8899999999999999984 2 22232 26778886 456789999999
Q ss_pred CccCCEEEEEee
Q 030498 140 VRNNSQVQFVPF 151 (176)
Q Consensus 140 Ikngd~L~Fk~~ 151 (176)
|++|++|++..+
T Consensus 69 i~~g~~i~l~~~ 80 (85)
T 2wyq_A 69 IDEKNFVVVMVT 80 (85)
T ss_dssp CCTTSEEEEEEC
T ss_pred CCCCCEEEEEEc
Confidence 999999988753
No 22
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.11 E-value=5.1e-10 Score=84.20 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=62.0
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|.|+|...+|+.+ .|++++||.+||..|+......+.+ +.|.|.|. .++|+.+|.+|||+
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~---------------qrL~~~g~-~L~d~~tL~~~~i~ 138 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ---------------QRLIFAGK-QLEDGRTLSDYNIQ 138 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG---------------EEEEETTE-ECCTTSBTGGGTCC
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhh---------------EEEEECCE-ECCCCCCHHHcCCC
Confidence 348899999999888 8899999999999999987543432 25778887 45678999999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+|++|++..++++
T Consensus 139 ~~~~i~l~~r~~G 151 (152)
T 3b08_A 139 KESTLHLVLRLRG 151 (152)
T ss_dssp TTCEEEEEECCCC
T ss_pred CCCEEEEEEecCC
Confidence 9999999988764
No 23
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.11 E-value=2.1e-10 Score=78.86 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=62.7
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|+|+|...+|+.+ .|.++.||.+||.+|+......+. ...|.|.|+.| .|+.+|.+|||.
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~---------------~qrL~~~G~~L-~d~~tl~~~~i~ 65 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN---------------SLRFLFEGQRI-ADNHTPKELGME 65 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGG---------------GEEEEETTEEC-CTTCCHHHHTCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcc---------------cEEEEECCEEe-CCCCCHHHcCCC
Confidence 369999999999998 889999999999999998754333 23688999755 567899999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+||+|++..++.+
T Consensus 66 ~~~~i~l~~~~~G 78 (79)
T 2uyz_B 66 EEDVIEVYQEQTG 78 (79)
T ss_dssp TTEEEEEEECCCC
T ss_pred CCCEEEEEEeccC
Confidence 9999999887653
No 24
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.11 E-value=3.2e-10 Score=77.61 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=59.7
Q ss_pred ceEEEEEecCCcee---E-ecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 65 AMRISILKLDGTSF---A-VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 65 Am~LtV~k~dG~~l---~-V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
.|.|+|...+|+.+ . |++++||.+||..|+......+.+| .|.|.|. .++|+++|.+|||
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~q---------------rL~~~g~-~L~d~~tL~~~~i 65 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQ---------------RLFYRGK-QMEDGHTLFDYEV 65 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTCBTTTTTC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhE---------------EEEECCE-ECCCCCCHHHcCC
Confidence 59999999999873 6 9999999999999999875544433 5778886 4567899999999
Q ss_pred ccCCEEEEEeee
Q 030498 141 RNNSQVQFVPFV 152 (176)
Q Consensus 141 kngd~L~Fk~~l 152 (176)
++|++|++..|+
T Consensus 66 ~~g~~i~l~~r~ 77 (78)
T 2faz_A 66 RLNDTIQLLVRQ 77 (78)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEEEeC
Confidence 999999988764
No 25
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.70 E-value=7.3e-12 Score=85.27 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=61.0
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|.|+|...+|+.+ .|++++||.+||..|+......+.++ .|.|.|. .++|+.+|.+|||.+|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q---------------rL~~~gk-~L~d~~tL~~~~i~~g 64 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQL---------------RVIFAGK-ELPNHLTVQNCDLEQQ 64 (76)
Confidence 7899999999988 88999999999999998875444332 5678886 4567899999999999
Q ss_pred CEEEEEeeeec
Q 030498 144 SQVQFVPFVLS 154 (176)
Q Consensus 144 d~L~Fk~~l~~ 154 (176)
++|+...++++
T Consensus 65 ~~i~l~~rlrg 75 (76)
T 3b1l_X 65 SIVHIVQRPRR 75 (76)
Confidence 99999988765
No 26
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.10 E-value=3.4e-10 Score=79.42 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=62.1
Q ss_pred CceEEEEEecCC-cee--E-ecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 64 SAMRISILKLDG-TSF--A-VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 64 ~Am~LtV~k~dG-~~l--~-V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
..|.|+|...+| +.+ . |++++||.|||..|+......+.+| .|.|.++ .++|+.+|.+||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rL~~~gk-~L~d~~tL~~~~ 69 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQ---------------RLFYRGK-QLENGYTLFDYD 69 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTE---------------EEEETTE-ECCSSSBHHHHT
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhE---------------EEEECCe-ECCCCCCHHHCC
Confidence 459999999999 577 4 9999999999999999875444433 5777886 456789999999
Q ss_pred CccCCEEEEEeeeec
Q 030498 140 VRNNSQVQFVPFVLS 154 (176)
Q Consensus 140 Ikngd~L~Fk~~l~~ 154 (176)
|.+|++|+.+.++.+
T Consensus 70 i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 70 VGLNDIIQLLVRPDS 84 (89)
T ss_dssp CCTTCEEEEEECCCC
T ss_pred CCCCCEEEEEEeCCC
Confidence 999999999988764
No 27
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.08 E-value=6.6e-10 Score=79.87 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=59.0
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHh---hhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKV---NDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~---~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
|+|+|...+|+.+ .|++++||.+||..|+..+ ...+.+ ..|.|.|+ .++|+.+|.+|||
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~---------------qrLi~~Gk-~L~D~~tL~~ygI 64 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAG---------------QKLIYAGK-ILNDDTALKEYKI 64 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTT---------------EEEEETTE-ECCTTSBGGGGTC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhh---------------EEEEECCE-ECCCcCcHHHCCC
Confidence 8999999999988 8899999999999999985 222222 26778886 4567799999999
Q ss_pred ccCCEEEEEeeeec
Q 030498 141 RNNSQVQFVPFVLS 154 (176)
Q Consensus 141 kngd~L~Fk~~l~~ 154 (176)
++|++|++..+-..
T Consensus 65 ~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 65 DEKNFVVVMVTKPK 78 (95)
T ss_dssp CSSSEEEEEESSCC
T ss_pred CCCCEEEEEEeCCC
Confidence 99999988765433
No 28
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.08 E-value=4.1e-10 Score=83.36 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=63.0
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|+|+|...+|+.+ .|.+++||.+||.+|+......+.+| .|.|.++ .++|+++|.+|||+
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~~gI~ 97 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYNIQ 97 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTE---------------EEEETTE-ECCSSCBTTTTTCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccE---------------EEEECCE-ECCCCCcHHHcCCC
Confidence 469999999999988 88999999999999999875444322 5778886 45678999999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+|++|++..++++
T Consensus 98 ~gs~I~l~~rl~G 110 (111)
T 2ojr_A 98 KESTLHLVLRLRG 110 (111)
T ss_dssp TTCEEEEEECCCC
T ss_pred CCCEEEEEEeCCC
Confidence 9999999988764
No 29
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.06 E-value=7.6e-10 Score=77.89 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=62.2
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|.|+|...+|+.+ .|..+.||.+||..|+......+.+| .|.|.|. +++|+.+|.+|||
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---------------rLi~~Gk-~L~d~~tL~~~~i- 66 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ---------------RLIYQGR-VLQDDKKLQEYNV- 66 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE---------------EEEETTE-ECCTTSBGGGGTC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---------------EEEECCe-ECCCCCCHHHcCC-
Confidence 469999999999999 88999999999999999875544433 5778886 5677889999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+|++|+.+.+...
T Consensus 67 ~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 67 GGKVIHLVERAPP 79 (90)
T ss_dssp TTEEEEEEECCCC
T ss_pred CCcEEEEEecCCC
Confidence 9999999887654
No 30
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=5.9e-10 Score=81.36 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=61.1
Q ss_pred ceEEEEEecCC----cee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 65 AMRISILKLDG----TSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 65 Am~LtV~k~dG----~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
.|+|+|....| +.+ .|+.++||.|||..|+......+.+| .|.|.++.|.||.++|.+|
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~gk~L~D~~~tL~~y 71 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEA---------------QIVYMEQLLTDDHCSLGSY 71 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGB---------------CEEETTEEECCSSSBHHHH
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHe---------------EEEECCEECCCCcccHHHC
Confidence 49999988654 566 88999999999999999986555544 4778887666666899999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
||++|++|+++.+.+.
T Consensus 72 gI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 72 GLKDGDMVVLLQKDNV 87 (102)
T ss_dssp TCCTTEEEEECBCCCC
T ss_pred CCCCCCEEEEEECCCC
Confidence 9999999999887654
No 31
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=4.7e-10 Score=80.20 Aligned_cols=71 Identities=21% Similarity=0.132 Sum_probs=59.4
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|+|+|...+|+.+ .|..+.||.+||..|+... +.+| .|.|.|+.|.|++.+|.+|||+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~q---------------rLi~~Gk~L~D~~~tL~~y~i~ 67 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQM---------------KLIYQGRLLQDPARTLSSLNIT 67 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTC---------------EEEETTEECCCSSCBTTTTTCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcE---------------EEEECCEEccCCcCCHHHcCCC
Confidence 459999999999988 8899999999999998876 3322 6788887555554999999999
Q ss_pred cCCEEEEEeee
Q 030498 142 NNSQVQFVPFV 152 (176)
Q Consensus 142 ngd~L~Fk~~l 152 (176)
+|++|+++.+.
T Consensus 68 ~g~~i~l~~~~ 78 (95)
T 1wia_A 68 NNCVIHCHRSP 78 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCCEEEEEECC
Confidence 99999988664
No 32
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.03 E-value=6.8e-10 Score=79.83 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=59.6
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
...|.|+|.. |+.+ .|++++||.+||..|+......+.+| .|.|.++ .++|+.+|.+|||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~y~I 78 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQ---------------VVLLAGA-PLEDEATLGQCGV 78 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGC---------------EEEETTE-ECCTTSBHHHHTC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHE---------------EEEECCE-ECCCCCcHHHCCC
Confidence 4459999998 7777 88999999999999999876544433 5778886 4577899999999
Q ss_pred ccCCEEEEEeeeec
Q 030498 141 RNNSQVQFVPFVLS 154 (176)
Q Consensus 141 kngd~L~Fk~~l~~ 154 (176)
++|++|+++.|+++
T Consensus 79 ~~gstI~lv~rl~G 92 (93)
T 2l7r_A 79 EALTTLEVAGRMLG 92 (93)
T ss_dssp CSSCEEEEECCCCC
T ss_pred CCCCEEEEEEecCC
Confidence 99999999988754
No 33
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.02 E-value=7.8e-10 Score=81.23 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=62.0
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
..+..|+|+|...+|+.+ .|..+.||.+||..|+......+.+| .|.|.|+ .++|+.+|.+|
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~y 82 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQ---------------RWFFSGR-PLTDKMKFEEL 82 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTC---------------EEEETTE-ECCTTSHHHHC
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccE---------------EEEECCE-ECCCCCcHHHc
Confidence 346679999999999998 88999999999999998875444332 5778886 55778999999
Q ss_pred CCccCCEEEEEeee
Q 030498 139 GVRNNSQVQFVPFV 152 (176)
Q Consensus 139 GIkngd~L~Fk~~l 152 (176)
||++|++|+++.+.
T Consensus 83 gI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 83 KIPKDYVVQVIVSQ 96 (106)
T ss_dssp CCSSSCEEEEECCC
T ss_pred CCCCCCEEEEEEeC
Confidence 99999999987654
No 34
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.7e-10 Score=82.23 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=59.4
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|+|+|...+|+.+ .|..+.||.+||..|+......+.+| .|.|.|+ +++|+.+|.+|||++|
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~~~~i~~g 65 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQI---------------KLIYSGK-VLQDSKTVSECGLKDG 65 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGC---------------EEEETTE-ECCTTSBTTTTTCCTT
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhE---------------EEEECCE-ECCCcCCHHHcCCCCC
Confidence 8899999999999 78899999999999999886544433 5778887 5677899999999999
Q ss_pred CEEEEEeee
Q 030498 144 SQVQFVPFV 152 (176)
Q Consensus 144 d~L~Fk~~l 152 (176)
++|+++-+-
T Consensus 66 ~~i~lv~~~ 74 (106)
T 3m62_B 66 DQVVFMVSQ 74 (106)
T ss_dssp CEEEEECCC
T ss_pred CEEEEEEcC
Confidence 999988664
No 35
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-09 Score=79.22 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=61.5
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
...|+|+|... |+.+ .|++++||.+||..|+......+.+| .|.|.|+ +++|+.+|.+|||
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~~gI 85 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQL---------------VLIFAGK-ILKDQDTLSQHGI 85 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGE---------------EEEETTE-EECTTCCTGGGTC
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhE---------------EEEECCE-ECCCcCcHHHcCC
Confidence 45699999998 7777 88999999999999999876544433 5778886 4567899999999
Q ss_pred ccCCEEEEEeeeec
Q 030498 141 RNNSQVQFVPFVLS 154 (176)
Q Consensus 141 kngd~L~Fk~~l~~ 154 (176)
++|++|++..+...
T Consensus 86 ~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 86 HDGLTVHLVIKTQN 99 (101)
T ss_dssp CTTCEEEEEECCSS
T ss_pred CCCCEEEEEEcCCC
Confidence 99999998876543
No 36
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.01 E-value=1.5e-09 Score=79.36 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=62.9
Q ss_pred CceEEEEEecCCcee-EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCcc
Q 030498 64 SAMRISILKLDGTSF-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 142 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l-~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkn 142 (176)
..|+|+|...+|+.. .|++++||.+||..|+......+.+| .|.|.++ +++|+.+|.+|||++
T Consensus 21 ~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~~ygI~~ 84 (100)
T 1yqb_A 21 HLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQL---------------VLIFAGK-ILKDPDSLAQCGVRD 84 (100)
T ss_dssp TEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE---------------EEEETTE-ECCTTSBHHHHTCCT
T ss_pred CeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhE---------------EEEECCE-ECCCcCcHHHCCCCC
Confidence 459999999999733 88999999999999999876544433 5778886 557789999999999
Q ss_pred CCEEEEEeeeecC
Q 030498 143 NSQVQFVPFVLSK 155 (176)
Q Consensus 143 gd~L~Fk~~l~~~ 155 (176)
|++|++..+++..
T Consensus 85 gstI~l~~r~~~~ 97 (100)
T 1yqb_A 85 GLTVHLVIKRQHR 97 (100)
T ss_dssp TCEEEEEECCCCS
T ss_pred CCEEEEEEcCCCC
Confidence 9999999887654
No 37
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.01 E-value=7.3e-10 Score=81.91 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=59.6
Q ss_pred CceEEEEEecCCcee-Eec-CcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCc-----------cc--
Q 030498 64 SAMRISILKLDGTSF-AVM-NSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQ-----------KL-- 128 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l-~V~-~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~-----------kL-- 128 (176)
..|.|+|+..+|+.. .|. +++||.|||..|+..+...+..| .|.+.+. .|
T Consensus 6 ~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~Q---------------rL~~~~~~~~~k~~~~~~~l~~ 70 (107)
T 1wf9_A 6 SGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQ---------------TLSTNRNLLLAKSPSDFLAFTD 70 (107)
T ss_dssp CCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTC---------------CCBSSGGGGTCCSHHHHTTCCS
T ss_pred CeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccC---------------EEEECCccccccCccccccccc
Confidence 349999999999886 888 99999999999999987544433 4555554 34
Q ss_pred -ccCcchhhhcCCccCCEEEEEee
Q 030498 129 -LDENSALQDCGVRNNSQVQFVPF 151 (176)
Q Consensus 129 -~dD~~~L~dyGIkngd~L~Fk~~ 151 (176)
++|+++|.+|||++|++|+++..
T Consensus 71 ~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 71 MADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp SCCTTCBGGGTCCCTTCEEECCCS
T ss_pred cCCCCCCHHHCCCCCCCEEEEEeC
Confidence 68899999999999999988755
No 38
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.01 E-value=1.1e-09 Score=79.36 Aligned_cols=78 Identities=12% Similarity=0.218 Sum_probs=64.0
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
..+..|+|+|...+|+.+ .|.++.||.+||.+|+......+. ...|.|.|+.| .|+.+|.+|
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~---------------~qrLif~Gk~L-~d~~tl~dy 80 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN---------------SLRFLFEGQRI-ADNHTPKEL 80 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGG---------------GEEEEETTEEC-CTTCCHHHH
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChh---------------hEEEEECCeEc-CCCCCHHHC
Confidence 346679999999999988 889999999999999998754333 23788999754 677899999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
||.+|++|++..++++
T Consensus 81 ~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 81 GMEEEDVIEVYQEQTG 96 (97)
T ss_dssp TCCTTCEEEEEESSSC
T ss_pred CCCCCCEEEEEEecCC
Confidence 9999999999877653
No 39
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=5.2e-10 Score=79.95 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=61.2
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|+|+|... |+.+ .|..++||.+||..|+......+.+| .|.|.++ +++|+.+|.+|||+
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk-~L~D~~tL~~~gi~ 78 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRL---------------VLIFTGK-ILRDQDILSQRGIL 78 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTB---------------CCEETTE-ECCTTSCHHHHTCC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---------------EEEECCE-ECCCcCCHHHCCCC
Confidence 4599999998 8887 88999999999999999876544433 4678886 45778999999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+|++|++..++..
T Consensus 79 ~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 79 DGSTVHVVVRSHS 91 (96)
T ss_dssp TTEEEECCBCCSS
T ss_pred CCCEEEEEEeCCC
Confidence 9999998877654
No 40
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.99 E-value=1.6e-09 Score=78.40 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=62.1
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCc-chhhhc
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDEN-SALQDC 138 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~-~~L~dy 138 (176)
....|.|+|...+| .+ .|++++||.+||..|+......+.+| .|.|.|+.| +|+ .+|.+|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~L-~D~~~tL~~y 74 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRM---------------QLYYSGIEL-ADDYRNLNEY 74 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTE---------------EEEETTEEE-CCTTSBHHHH
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHE---------------EEEECCEEC-CCCcccHHHC
Confidence 34569999999988 55 89999999999999999875544433 577888755 555 899999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
||++|++|+.+.++.+
T Consensus 75 gI~~gstl~lv~r~~g 90 (94)
T 2kan_A 75 GITEFSEIVVFLKSIN 90 (94)
T ss_dssp TCCTTEEEEEEECCCS
T ss_pred CCCCCCEEEEEEeCCC
Confidence 9999999999988765
No 41
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=7.3e-10 Score=79.84 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=56.0
Q ss_pred eEEEEEecCCcee-----EecCcccHHHHHHHHHHH-hhhhhhcccCCccccccceeeeeeeec--CCcccccCcchhhh
Q 030498 66 MRISILKLDGTSF-----AVMNSATVKDLKLAIKKK-VNDMEQSNLGHRHISWKHVWANYCLSH--QNQKLLDENSALQD 137 (176)
Q Consensus 66 m~LtV~k~dG~~l-----~V~~~ATV~DLKkAI~~~-~~~~~~Rq~G~~~ISW~~VW~~f~L~~--~~~kL~dD~~~L~d 137 (176)
|.|+|..+.|+.+ .|++++||.|||..|+.. ...+|.||. |.+ .|. .++|+.+|.+
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~Qr---------------L~~~~~Gk-~L~D~~tL~~ 74 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQS---------------LRLDPKGK-SLKDEDVLQK 74 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCC---------------EESSTTSC-CCCTTCBTTT
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeE---------------EEecCCCc-CcCCCCCHHH
Confidence 9999999988664 689999999999999996 344666553 444 365 5677899999
Q ss_pred cCCccCCEEEEEe
Q 030498 138 CGVRNNSQVQFVP 150 (176)
Q Consensus 138 yGIkngd~L~Fk~ 150 (176)
|||.+|++|+|+.
T Consensus 75 y~i~~~stl~~KD 87 (88)
T 2dzj_A 75 LPVGTTATLYFRD 87 (88)
T ss_dssp SSCCSEEEEEECC
T ss_pred cCCCCCCEEEEEe
Confidence 9999999999974
No 42
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.98 E-value=2.2e-09 Score=82.58 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=63.6
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
...|.|+|...+|+.+ .|.++.||.+||..|+......+++ ..|.|.|. .++|+.+|.+|||
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---------------q~L~~~G~-~L~d~~tL~~y~i 142 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL---------------FWLTFEGK-PLEDQLPLGEYGL 142 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG---------------EEEEETTE-ECCTTSBGGGGTC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHH---------------EEEEECCe-ecCCCCCHHHcCC
Confidence 4568899999999998 8899999999999999887543332 26888886 5667889999999
Q ss_pred ccCCEEEEEeeeecC
Q 030498 141 RNNSQVQFVPFVLSK 155 (176)
Q Consensus 141 kngd~L~Fk~~l~~~ 155 (176)
++|++|+..-|+++-
T Consensus 143 ~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 143 KPLSTVFMNLRLRGG 157 (159)
T ss_dssp CTTCEEEEEECCC--
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999998764
No 43
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=1.6e-09 Score=81.04 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=57.6
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|.|+|..+.|+.+ .|.+++||.|||..|+......+.+| +|.|.++ .++|+.+|.||||.+|
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQ---------------rLi~~Gk-~L~D~~TL~dygI~~g 92 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKI---------------VLKKWYT-IFKDHVSLGDYEIHDG 92 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGC---------------EEEETTE-ECCSSCBHHHHTCCTT
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHE---------------EEEECCE-ECCCCCCHHHcCCCCC
Confidence 9999999999999 88999999999999999976544433 6888887 4577899999999999
Q ss_pred CEEEE
Q 030498 144 SQVQF 148 (176)
Q Consensus 144 d~L~F 148 (176)
++|+.
T Consensus 93 stlhL 97 (100)
T 1uh6_A 93 MNLEL 97 (100)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99765
No 44
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.96 E-value=3.1e-09 Score=78.49 Aligned_cols=76 Identities=22% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCceEEEEEec---CCcee--EecC-cccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhh
Q 030498 63 GSAMRISILKL---DGTSF--AVMN-SATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQ 136 (176)
Q Consensus 63 G~Am~LtV~k~---dG~~l--~V~~-~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~ 136 (176)
-..|+|+|... +|+.+ .|++ ++||.+||..|+......+.+| .|.|.+. +++|+.+|.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Q---------------rL~~~Gk-~L~D~~tL~ 88 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQ---------------KLSGKAG-FLKDNMSLA 88 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTS---------------EEECSSS-BCCTTSBTT
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHe---------------EEEECCE-ECCCCCcHH
Confidence 35699999998 88888 8887 9999999999999876444433 5777776 677889999
Q ss_pred hcCCccCCEEEEEeeeec
Q 030498 137 DCGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 137 dyGIkngd~L~Fk~~l~~ 154 (176)
+|||.+|++|+..-++++
T Consensus 89 ~y~I~~g~~l~l~~r~~G 106 (111)
T 1we6_A 89 HYNVGAGEILTLSLRERS 106 (111)
T ss_dssp TTTCSSSCEEEEECSSCC
T ss_pred HCCCCCCCEEEEEEEcCC
Confidence 999999999999887764
No 45
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.95 E-value=8.6e-10 Score=78.11 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=56.1
Q ss_pred eEEEEEecCCcee-E-ecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC--Ccccc--cCcchhhhcC
Q 030498 66 MRISILKLDGTSF-A-VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--NQKLL--DENSALQDCG 139 (176)
Q Consensus 66 m~LtV~k~dG~~l-~-V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~--~~kL~--dD~~~L~dyG 139 (176)
|+|.|+..+|+.. . |+.++||.|||.+|+......+.++. |.+. ++.|. +|+.+|.+||
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qr---------------L~~~~p~k~l~l~~~~~tL~~~g 65 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQR---------------ILVGYPPECLDLSDRDITLGDLP 65 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCC---------------CEESSCCCCCCCCCSSCBTTTSS
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceE---------------EEeCCCCcccccCCCCCCHHHcC
Confidence 7899999999877 5 89999999999999999865554432 3333 34442 3788999999
Q ss_pred CccCCEEEEEee
Q 030498 140 VRNNSQVQFVPF 151 (176)
Q Consensus 140 Ikngd~L~Fk~~ 151 (176)
|.+|++|+++..
T Consensus 66 l~~g~~l~v~~~ 77 (86)
T 2kzr_A 66 IQSGDMLIVEED 77 (86)
T ss_dssp CCTTCEEECCCC
T ss_pred CCCCCEEEEEeC
Confidence 999999988754
No 46
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.94 E-value=2.3e-09 Score=85.34 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=62.9
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|.|+|...+|+.+ .|.+++||.+||..|+......+.+| .|.|.|+. ++|+.+|.+|||++|
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk~-L~D~~tL~~y~I~~g 64 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIFAGKQ-LEDGRTLSDYNIQKE 64 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTE---------------EEEETTEE-CCTTSBGGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHE---------------EEEECCcc-ccCcCcHHHcCCCCC
Confidence 7899999999998 88999999999999999876444433 67888874 577889999999999
Q ss_pred CEEEEEeeeec
Q 030498 144 SQVQFVPFVLS 154 (176)
Q Consensus 144 d~L~Fk~~l~~ 154 (176)
++|++.-|+++
T Consensus 65 stI~Lvlrl~G 75 (169)
T 3l0w_B 65 STLHLVLRLRG 75 (169)
T ss_dssp CEEEEEECCCC
T ss_pred CEEEEEEEecc
Confidence 99999998865
No 47
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.94 E-value=1.6e-09 Score=77.22 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=60.6
Q ss_pred CceEEEEEecCCc--ee--EecCcccHHHHHHHHHHHh--hhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 64 SAMRISILKLDGT--SF--AVMNSATVKDLKLAIKKKV--NDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 64 ~Am~LtV~k~dG~--~l--~V~~~ATV~DLKkAI~~~~--~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
..|+|+|...+|+ .+ .|+.++||.|||..|+... ...+.+| .|.|.|+ +++|+.+|.+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~Q---------------rLi~~Gk-~L~D~~tL~~ 69 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQ---------------RLIYSGK-LLLDHQCLRD 69 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTC---------------EEEETTE-ECCSSSCHHH
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHe---------------EEEECCE-ECcCcCCHHH
Confidence 4599999999998 44 5569999999999999987 3333333 5778887 5567789999
Q ss_pred c--CCccCCEEEEEeeeec
Q 030498 138 C--GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 138 y--GIkngd~L~Fk~~l~~ 154 (176)
| ||++|++|+.+.++++
T Consensus 70 ~~~~i~~~~~i~lv~~~~g 88 (93)
T 1wgd_A 70 LLPKQEKRHVLHLVCNVKS 88 (93)
T ss_dssp HSCSSSCSEEEEEECCCCC
T ss_pred HhcCCCCCCEEEEEeCCCC
Confidence 9 9999999999887765
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.94 E-value=2.6e-09 Score=81.37 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=60.3
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
...|+|+|... |+.+ .|..+.||.+||..|+......+.+| .|.|.++ +++|+.+|.+|||
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~dygI 92 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQL---------------VLIFAGK-ILKDQDTLIQHGI 92 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSE---------------EEEETTE-EESTTSCGGGTTC
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceE---------------EEEECCE-EcCCCCCHHHcCC
Confidence 45699999998 8887 88999999999999999875443322 5778887 4567899999999
Q ss_pred ccCCEEEEEeeeec
Q 030498 141 RNNSQVQFVPFVLS 154 (176)
Q Consensus 141 kngd~L~Fk~~l~~ 154 (176)
++|++|+++.+...
T Consensus 93 ~~gstI~lv~~~~g 106 (125)
T 1j8c_A 93 HDGLTVHLVIKRDP 106 (125)
T ss_dssp SSSEEEEEEEC---
T ss_pred CCCCEEEEEeccCC
Confidence 99999999888754
No 49
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.93 E-value=8.3e-10 Score=80.99 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=56.5
Q ss_pred hccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 60 LEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 60 le~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
++-|..|+|+|.. +|+.+ .|.+++||.+||..|+......+.+| .|.|.|+ +++|+.+|.+
T Consensus 23 l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~~ 85 (101)
T 3m63_B 23 FQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQ---------------RLIYSGK-ILKDDQTVES 85 (101)
T ss_dssp ------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTC---------------CEEETTE-ECCTTSBTTT
T ss_pred ccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHE---------------EEEECCE-ECCCcCcHHH
Confidence 4455568888887 88888 88899999999999999886544433 4678886 5677899999
Q ss_pred cCCccCCEEEEEe
Q 030498 138 CGVRNNSQVQFVP 150 (176)
Q Consensus 138 yGIkngd~L~Fk~ 150 (176)
|||++|++|+.+.
T Consensus 86 ~gI~~g~tI~lv~ 98 (101)
T 3m63_B 86 YHIQDGHSVHLVK 98 (101)
T ss_dssp TTCCTTEEEEECC
T ss_pred CCCCCCCEEEEEe
Confidence 9999999998764
No 50
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.93 E-value=3.1e-09 Score=79.91 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=60.2
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|+|+|...+|+.+ .|++++||.|||.+|+......+.++ .|.|.|.. ++|+.+|.+|||.+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q---------------~L~~~g~~-L~d~~tL~~~~i~~~ 64 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGKQ-LEDGRTLSDYNIQKE 64 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTEE-CCTTSBTGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHe---------------EEEECCeE-CcCcccHHHhccCCC
Confidence 8999999999988 88999999999999999875544433 57777764 577899999999999
Q ss_pred CEEEEEeeee
Q 030498 144 SQVQFVPFVL 153 (176)
Q Consensus 144 d~L~Fk~~l~ 153 (176)
++|++..+..
T Consensus 65 ~~l~l~~~~~ 74 (152)
T 3b08_A 65 STLHLVLRLR 74 (152)
T ss_dssp CEEEEEECCT
T ss_pred CeeEEEeecc
Confidence 9999887653
No 51
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.93 E-value=3.7e-09 Score=82.68 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=58.9
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|.|.|...+|+.+ .|.++.||.+||..|+.....-+..| +|.|.+. .++|+.+|.+|||+
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q---------------~L~~~g~-~L~D~~tL~~y~i~ 158 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYNIQ 158 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------CEEETTE-ECCTTSBSGGGTCC
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeE---------------EEEECCc-cCCCCCcHHHhCCC
Confidence 347788888999988 88999999999999999975433322 5778886 55678899999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+|++|+...|+++
T Consensus 159 ~g~tl~l~~rlrg 171 (172)
T 3u30_A 159 KESTLHLVLRLRG 171 (172)
T ss_dssp TTCEEEECC----
T ss_pred CCCEEEEEEecCC
Confidence 9999999988764
No 52
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=3.5e-09 Score=77.47 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=62.3
Q ss_pred CceEEEEEecCCcee-EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCcc
Q 030498 64 SAMRISILKLDGTSF-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 142 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l-~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkn 142 (176)
..|+|+|...+|+.. .|..+.||.+||..|+......+.+| .|.|.++ +++|+.+|.+|||++
T Consensus 16 ~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~~gi~~ 79 (106)
T 1wx7_A 16 HLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQL---------------VLIFAGK-ILKDPDSLAQCGVRD 79 (106)
T ss_dssp SEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTE---------------EEEETTE-ECCTTSCHHHHTCCT
T ss_pred ceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhE---------------EEEECCE-ECCCcCcHHHcCCCC
Confidence 359999999998733 88999999999999999876544433 5778886 557789999999999
Q ss_pred CCEEEEEeeeecC
Q 030498 143 NSQVQFVPFVLSK 155 (176)
Q Consensus 143 gd~L~Fk~~l~~~ 155 (176)
|++|++..+++..
T Consensus 80 g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 80 GLTVHLVIKRQHR 92 (106)
T ss_dssp TEEEEEEECCCCC
T ss_pred CCEEEEEEcCCCC
Confidence 9999999887654
No 53
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=6.8e-09 Score=77.59 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=63.5
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
...+|.|...+|+.+ .|++++||.+||..|+......+.+| .|.|.++ .++|+.+|.+|||+
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rLi~~Gk-~L~D~~tL~~ygI~ 71 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIWAGK-QLEDGRTLSDYNIQ 71 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTCBTTTTTCC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHE---------------EEEECCE-ECCCCCcHHHCCCC
Confidence 457999999999998 88999999999999999876544433 5778886 45678999999999
Q ss_pred cCCEEEEEeeeec
Q 030498 142 NNSQVQFVPFVLS 154 (176)
Q Consensus 142 ngd~L~Fk~~l~~ 154 (176)
+|++|+...++.+
T Consensus 72 ~gstI~l~~~~~G 84 (114)
T 2kdi_A 72 RESTLHLVLRLRG 84 (114)
T ss_dssp SSCEEEEEECCCS
T ss_pred CCCEEEEEEEcCC
Confidence 9999999988865
No 54
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.89 E-value=5.7e-09 Score=73.94 Aligned_cols=72 Identities=24% Similarity=0.318 Sum_probs=58.0
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
+..+..+.+.+.+|+.+ .|++++||.|||..|+......+.+| .|.|.|+ .++|+.+|.+||
T Consensus 8 ~~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q---------------rL~~~Gk-~L~D~~tL~~~g 71 (85)
T 2kd0_A 8 HSHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQ---------------KLIFKGK-VLVETSTLKQSD 71 (85)
T ss_dssp CSCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTC---------------EEEETTE-ECCTTCBTTTTT
T ss_pred ccCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHE---------------EEEECCe-ECCCcCCHHHCC
Confidence 34455667888899998 88999999999999999876545433 4668886 557789999999
Q ss_pred CccCCEEEEE
Q 030498 140 VRNNSQVQFV 149 (176)
Q Consensus 140 Ikngd~L~Fk 149 (176)
|++|++|++.
T Consensus 72 i~~g~~l~l~ 81 (85)
T 2kd0_A 72 VGSGAKLMLM 81 (85)
T ss_dssp CCTTEEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999998875
No 55
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=5.5e-09 Score=74.19 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=57.9
Q ss_pred CceEEEEEecCCcee--EecCc-----ccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhh
Q 030498 64 SAMRISILKLDGTSF--AVMNS-----ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQ 136 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~-----ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~ 136 (176)
..|+|+|... |+.+ .|+.+ +||.|||..|+......+.+| .|.|.+..|.||+.+|.
T Consensus 6 ~~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~q---------------rL~~~Gk~L~D~~~~L~ 69 (92)
T 1wxv_A 6 SGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQ---------------KLIFKGKSLKEMETPLS 69 (92)
T ss_dssp SSEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTC---------------EEEETTEEECCSSSBHH
T ss_pred CeEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHE---------------EEEECCeecCCCcccHH
Confidence 3599999984 7776 78774 999999999999876545433 57788887766678999
Q ss_pred hcCCccCCEEEEEee
Q 030498 137 DCGVRNNSQVQFVPF 151 (176)
Q Consensus 137 dyGIkngd~L~Fk~~ 151 (176)
+|||++|++|+++..
T Consensus 70 ~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 70 ALGIQDGCRVMLIGK 84 (92)
T ss_dssp HHTCCSSEEEEEESC
T ss_pred HCCCCCCCEEEEEec
Confidence 999999999988754
No 56
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.87 E-value=2.3e-10 Score=86.76 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|.|+|...+|+.+ .|++++||.+||..|+......+++| .|.|.|. .++|+.+|.+|||.+|
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~~~~I~~g 64 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYNIQKE 64 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHE---------------EEEECCE-ECCCCCchhhhccCCC
Confidence 7899999999998 88999999999999999876544433 4678886 5678899999999999
Q ss_pred CEEEEEeeeec
Q 030498 144 SQVQFVPFVLS 154 (176)
Q Consensus 144 d~L~Fk~~l~~ 154 (176)
++|++..++.+
T Consensus 65 sti~l~~rl~G 75 (128)
T 3u5e_m 65 STLHLVLRLRG 75 (128)
T ss_dssp -----------
T ss_pred CEEEEEEEcCC
Confidence 99999988865
No 57
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.86 E-value=6.3e-09 Score=85.10 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=63.7
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|.|+|...+|+.+ .|.+++||.+||..|+.....-+++| .|.|.+. +++|+.+|.+|||++|
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~Q---------------rLi~~Gk-~L~D~~tL~dygI~~g 169 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYNIQKE 169 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------CEEETTE-ECCTTCBGGGGTCCTT
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHE---------------EEEECCE-ECCCCCCHHHCCCCCC
Confidence 9999999999999 88999999999999999876544433 4778886 5667889999999999
Q ss_pred CEEEEEeeeecC
Q 030498 144 SQVQFVPFVLSK 155 (176)
Q Consensus 144 d~L~Fk~~l~~~ 155 (176)
++|++.-++++-
T Consensus 170 stI~LvlrlrGG 181 (189)
T 3q3f_A 170 STLHLVLRLRGG 181 (189)
T ss_dssp CEEEECCCCCCC
T ss_pred CEEEEEEEcCCC
Confidence 999999988763
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.86 E-value=9.6e-09 Score=80.32 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=63.4
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
....|.|+|...+|+.+ .|.+++||.+||..|+......+.+| .|.|.+. .++|+.+|.+||
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~Q---------------rL~~~g~-~L~d~~tL~~~~ 80 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYN 80 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTCBTGGGT
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHE---------------EEEECCc-cccccCCHhHcC
Confidence 34569999999999998 88999999999999999886544433 5778886 567789999999
Q ss_pred CccCCEEEEEeeeec
Q 030498 140 VRNNSQVQFVPFVLS 154 (176)
Q Consensus 140 Ikngd~L~Fk~~l~~ 154 (176)
|.+|++|+..-++..
T Consensus 81 i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 81 IQKESTLHLVLRLRG 95 (172)
T ss_dssp CCTTCEEEEEECCCC
T ss_pred Ccccceeeeeecccc
Confidence 999999999877643
No 59
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.86 E-value=8.1e-09 Score=79.34 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=59.8
Q ss_pred ceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeee-c-CCcccccCcchhhhcCC
Q 030498 65 AMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS-H-QNQKLLDENSALQDCGV 140 (176)
Q Consensus 65 Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~-~-~~~kL~dD~~~L~dyGI 140 (176)
+|.|+|...+|+.+ .|.+++||.+||..|+......+.+| .|. | .|. .++|+.+|.+|||
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~Q---------------rL~~~~~g~-~L~d~~tL~~y~i 65 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQ---------------RLAVHPSGV-ALQDRVPLASQGL 65 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGE---------------EEEEETTCC-BCCTTSCGGGGTC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHE---------------EEEEcCCCC-CCCCCCCHHHcCC
Confidence 48999999999998 88999999999999999986545443 455 7 575 4588999999999
Q ss_pred ccCCEEEEEee
Q 030498 141 RNNSQVQFVPF 151 (176)
Q Consensus 141 kngd~L~Fk~~ 151 (176)
.+|++|+...+
T Consensus 66 ~~~~~l~l~~~ 76 (159)
T 3rt3_B 66 GPGSTVLLVVD 76 (159)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEcc
Confidence 99999998877
No 60
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.85 E-value=5.9e-09 Score=76.93 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=56.6
Q ss_pred CCceEEEEEecCCcee----EecCcccHHHHHHHH-HHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 63 GSAMRISILKLDGTSF----AVMNSATVKDLKLAI-KKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l----~V~~~ATV~DLKkAI-~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
...|+|+|...+|+.| .|++++||.+||..| +......+++| .|.|.|+ .+.|+.+|.+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~d 80 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEI---------------KLLLKGK-VLHDNLFLSD 80 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGE---------------EEEETTE-EECTTCBGGG
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhE---------------EEEECCE-ECcCcCCHHH
Confidence 4569999999999977 456999999999999 55543333322 5788886 5677899999
Q ss_pred cCC-ccCCEEEEEe
Q 030498 138 CGV-RNNSQVQFVP 150 (176)
Q Consensus 138 yGI-kngd~L~Fk~ 150 (176)
||| ++|++|++.-
T Consensus 81 y~I~~~g~ti~lmv 94 (98)
T 4a20_A 81 LKVTPANSTITVMI 94 (98)
T ss_dssp SCCBTTBCEEEEEE
T ss_pred cCcCCCCCEEEEEE
Confidence 999 9999988763
No 61
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.83 E-value=8.4e-09 Score=74.60 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=55.9
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|+|+|. ..|+.+ .|+.++||.|||..|+......+++| .|.|.+..| +|. +|.+|||+
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~Q---------------rL~~~Gk~L-dd~-tL~~~~i~ 77 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQ---------------KVMYKGLVP-EDK-TLREIKVT 77 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTC---------------CCBSSSBCC-SSS-BHHHHCCC
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHe---------------EEEECCeeC-CcC-cHHHCCCC
Confidence 35899997 568887 88999999999999999987655554 366778755 554 99999999
Q ss_pred cCCEEEEEe
Q 030498 142 NNSQVQFVP 150 (176)
Q Consensus 142 ngd~L~Fk~ 150 (176)
+|++|+.+.
T Consensus 78 ~g~~i~lv~ 86 (95)
T 1v86_A 78 SGAKIMVVG 86 (95)
T ss_dssp TTEEEEECC
T ss_pred CCCEEEEEe
Confidence 999988754
No 62
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.82 E-value=1.2e-08 Score=75.83 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=60.6
Q ss_pred CceEEEEEec----------CCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccC
Q 030498 64 SAMRISILKL----------DGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDE 131 (176)
Q Consensus 64 ~Am~LtV~k~----------dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD 131 (176)
..++|.|..- +|+.+ .|++++||.+||..|+......+.+| .|.|.+. .++|
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q---------------rL~~~Gk-~L~D 87 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQ---------------KLQYEGI-FIKD 87 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTE---------------EEEETTE-EECT
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHE---------------EEEECCE-ECCC
Confidence 4788888875 46677 88999999999999999875444433 5778886 4577
Q ss_pred cchhhhcCCccCCEEEEEeeeec
Q 030498 132 NSALQDCGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 132 ~~~L~dyGIkngd~L~Fk~~l~~ 154 (176)
+.+|.+|||.+|++|+++-++++
T Consensus 88 ~~tL~~y~i~~g~~i~lv~rl~G 110 (115)
T 1we7_A 88 SNSLAYYNMASGAVIHLALKERS 110 (115)
T ss_dssp TSBHHHHTCCSSCEEEEEECCCS
T ss_pred CCCHHHCCCCCCCEEEEEEEcCC
Confidence 89999999999999999988765
No 63
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.76 E-value=8.5e-10 Score=87.25 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=0.0
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|.|+|...+|+.+ .|++++||.+||..|+......+++| .|.|.|. .++|+.+|.+|||.+|
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~Q---------------rLi~~Gk-~L~D~~tL~dygI~~g 64 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYNIQKE 64 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---------------EEEECCE-EccccCcHHHcCCCCC
Confidence 7899999999988 88999999999999999876544433 4678886 4577889999999999
Q ss_pred CEEEEEeeeecC
Q 030498 144 SQVQFVPFVLSK 155 (176)
Q Consensus 144 d~L~Fk~~l~~~ 155 (176)
++|++.-++.+-
T Consensus 65 stL~Lvlrl~GG 76 (152)
T 3u5c_f 65 STLHLVLRLRGG 76 (152)
T ss_dssp ------------
T ss_pred CEEEEEeeccCC
Confidence 999999999774
No 64
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.72 E-value=1.9e-08 Score=73.97 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=57.3
Q ss_pred ceEEEEEecCC---cee--Eec--------C-cccHHHHHHHHHHHh--hhhhhcccCCccccccceeeeeeeecCCccc
Q 030498 65 AMRISILKLDG---TSF--AVM--------N-SATVKDLKLAIKKKV--NDMEQSNLGHRHISWKHVWANYCLSHQNQKL 128 (176)
Q Consensus 65 Am~LtV~k~dG---~~l--~V~--------~-~ATV~DLKkAI~~~~--~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL 128 (176)
.|+|+|...+| +.+ .|+ + +.||.+||..|+... ...+.++ ..|.|.|+.|
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~--------------qrLi~~Gk~L 77 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPEL--------------IDLIYCGRKL 77 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSS--------------EEEEETTEEC
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhc--------------EEEEECCeEC
Confidence 48999999999 666 533 3 599999999999987 4433320 2577888755
Q ss_pred ccCcchhhhcCCccCCEEEEEeeee
Q 030498 129 LDENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 129 ~dD~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
+|+.+|.+|||++|++|+++.+..
T Consensus 78 -~D~~tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 78 -KDDQTLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp -CTTCBHHHHTCCTTCEEEEEESSC
T ss_pred -CCCCcHHHcCCCCCCEEEEEeCCC
Confidence 677999999999999999887653
No 65
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.71 E-value=4.5e-08 Score=72.57 Aligned_cols=70 Identities=13% Similarity=0.301 Sum_probs=57.2
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
..-|.|.|..+.|+++ .|.++.||.+||+.|+.+...-++ +..|.|.++ .++|..+|.||||
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~---------------qQrLif~Gk-~LkD~~TL~dY~I 82 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPN---------------KIVLQKGGS-VLKDHISLEDYEV 82 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGG---------------GEEEEETTE-ECCTTSBTGGGTC
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHH---------------HEEEEeCCE-EccCcCCHHHcCC
Confidence 3448999999999999 888999999999999988744332 237889886 5677889999999
Q ss_pred ccCCEEEE
Q 030498 141 RNNSQVQF 148 (176)
Q Consensus 141 kngd~L~F 148 (176)
.||++|+.
T Consensus 83 ~dgstLhL 90 (93)
T 3plu_A 83 HDQTNLEL 90 (93)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEEE
Confidence 99999763
No 66
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.71 E-value=3e-08 Score=74.09 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=55.9
Q ss_pred EEEEEecC----Ccee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 67 RISILKLD----GTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 67 ~LtV~k~d----G~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
+|.|...+ |+.+ .|.+++||.+||..|+.....-+. + .+|.|.|. .++|+.+|.+|||
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~-q--------------QrLI~~GK-iL~D~~TL~~y~I 80 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQEN-Y--------------IKIVINKK-QLQLGKTLEEQGV 80 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCST-T--------------CEEEETTE-ECCTTSBHHHHTC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHH-H--------------eEEEeCCe-ECCCCCcHHHcCC
Confidence 67787777 6677 899999999999999999864332 2 27889886 5678899999999
Q ss_pred ccCCEEEEEeeeec
Q 030498 141 RNNSQVQFVPFVLS 154 (176)
Q Consensus 141 kngd~L~Fk~~l~~ 154 (176)
.+|++| .+-+++.
T Consensus 81 ~~gsti-~vl~lrg 93 (100)
T 1wju_A 81 AHNVKA-MVLELKQ 93 (100)
T ss_dssp CSSEEE-EEECCCC
T ss_pred CCCCEE-EEEEECC
Confidence 999998 4444443
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.69 E-value=2.9e-08 Score=70.87 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=56.0
Q ss_pred CceEEEEEecCCcee---EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeee---cCCcccccCcchhhh
Q 030498 64 SAMRISILKLDGTSF---AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS---HQNQKLLDENSALQD 137 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l---~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~---~~~~kL~dD~~~L~d 137 (176)
..|+|+|.. .|+.+ .|+.++||.|||..|+......+++| .|. |.|. .++|+.+|.+
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~Q---------------kLi~~k~~Gk-~L~D~~~L~~ 68 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQ---------------KLLGLKVKGK-PAENDVKLGA 68 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTC---------------EEESCEETTE-ECCTTSBHHH
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHe---------------EEEeeccCCc-CcCCCCCHHH
Confidence 358999885 68887 46788999999999999987666655 355 6775 5577889999
Q ss_pred cCCccCCEEEEEe
Q 030498 138 CGVRNNSQVQFVP 150 (176)
Q Consensus 138 yGIkngd~L~Fk~ 150 (176)
|||++|++|+.+-
T Consensus 69 ~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 69 LKLKPNTKIMMMG 81 (90)
T ss_dssp HTCCTTEEEEEEC
T ss_pred cCCCCCCEEEEEe
Confidence 9999999988753
No 68
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.68 E-value=4.7e-08 Score=85.31 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=62.1
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
....|+|+|..++|+.+ .|+.++||.+||..|+......+++| .|.|.++ .++|+.+|.+||
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~Q---------------RLi~~Gk-~L~D~~TLsdyg 293 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ---------------RLIFAGK-QLEDGRTLSDYN 293 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC---------------EEEETTE-ECCTTSBTGGGT
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHE---------------EEEeCCe-ecCCCCCHHHcC
Confidence 45669999999999988 88999999999999999876545433 5778886 457789999999
Q ss_pred CccCCEEEEEeeee
Q 030498 140 VRNNSQVQFVPFVL 153 (176)
Q Consensus 140 Ikngd~L~Fk~~l~ 153 (176)
|++|++|+.+.|++
T Consensus 294 I~~gstL~LvlRLr 307 (307)
T 3ai5_A 294 IQKESTLHLVLRLR 307 (307)
T ss_dssp CCTTCEEEEEC---
T ss_pred CCCCCEEEEEEeCC
Confidence 99999999988764
No 69
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.62 E-value=5.9e-08 Score=70.45 Aligned_cols=69 Identities=9% Similarity=0.083 Sum_probs=54.3
Q ss_pred CceEEEEEecCCcee---EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 64 SAMRISILKLDGTSF---AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l---~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
..|+|+|.. .|+.+ .|+.++||.|||..|+.....-+.+| .|.|.|..| +|+ +|.+|||
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~Q---------------kLi~~Gk~L-~D~-tL~~~~I 67 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQ---------------KVMVKGGTL-KDD-DWGNIKM 67 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTS---------------CCEETTEEC-CSS-CCCSCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHe---------------EEEECCcCC-CCC-CHHHCCC
Confidence 459999985 56655 67899999999999999986655554 356788644 555 9999999
Q ss_pred ccCCEEEEEe
Q 030498 141 RNNSQVQFVP 150 (176)
Q Consensus 141 kngd~L~Fk~ 150 (176)
++|++|+.+-
T Consensus 68 ~~g~~i~l~~ 77 (96)
T 1wgg_A 68 KNGMTVLMMG 77 (96)
T ss_dssp CSSCEEECCC
T ss_pred CCCCEEEEEe
Confidence 9999988753
No 70
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.62 E-value=1.2e-07 Score=71.32 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=54.8
Q ss_pred eEEEEEecCC--cee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC-
Q 030498 66 MRISILKLDG--TSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV- 140 (176)
Q Consensus 66 m~LtV~k~dG--~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI- 140 (176)
|+|+|....+ ..+ .|.+++||.+||..|+..+...|.+|. |.++++ |++|+.+|.+|||
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR---------------li~ggk-ll~D~~TL~~ygI~ 88 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ---------------WVIGQR-LARDQETLHSHGVR 88 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE---------------EEETTE-EECTTCBTGGGTCC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE---------------EeccCe-EccCcCcHHHcCCC
Confidence 7888888875 345 889999999999999999877666442 345554 8999999999999
Q ss_pred ccCCEEEEE
Q 030498 141 RNNSQVQFV 149 (176)
Q Consensus 141 kngd~L~Fk 149 (176)
.||++|+..
T Consensus 89 ~~G~t~hL~ 97 (105)
T 4dbg_A 89 QNGDSAYLY 97 (105)
T ss_dssp STTCEEEEE
T ss_pred CCCCEEEEE
Confidence 599998764
No 71
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=8.8e-08 Score=73.88 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=59.5
Q ss_pred ceEEEEE-ecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 65 AMRISIL-KLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 65 Am~LtV~-k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
.|+|.|. .-+|+.+ .|..++||.|||.+|...+. .|..+. ||.|.|. .+.|+.+|.+|||+
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~-iP~e~q--------------rLIy~GK-iLKD~eTL~~~gIk 78 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG-IPHSVL--------------QIRYSGK-ILKNNETLVQHGVK 78 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT-CCTTTE--------------EEEETTE-EECSSCCHHHHSCC
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC-CChHHE--------------EEEECCe-EcCCcchHHHcCCC
Confidence 3888886 7778777 88999999999999999984 343233 8999997 45678899999999
Q ss_pred cCCEEEEEeee
Q 030498 142 NNSQVQFVPFV 152 (176)
Q Consensus 142 ngd~L~Fk~~l 152 (176)
+|.+|+++.+=
T Consensus 79 ~g~TIhLvi~s 89 (118)
T 2daf_A 79 PQEIVQVEIFS 89 (118)
T ss_dssp SSCEEEEEEEE
T ss_pred CCCEEEEEEec
Confidence 99999998764
No 72
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.61 E-value=6.2e-08 Score=71.41 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=54.9
Q ss_pred CceEEEEEecCCc--ee--EecCcccHHHHHHHHHHHhhh-hhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 64 SAMRISILKLDGT--SF--AVMNSATVKDLKLAIKKKVND-MEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 64 ~Am~LtV~k~dG~--~l--~V~~~ATV~DLKkAI~~~~~~-~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
..|.|+|...+|+ .+ .|+++.||.+||..|+....- .|..+. .|.|.|+ .+.|+.+|.+|
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~Q--------------rLIy~Gk-~L~D~~tL~~y 86 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQ--------------RLVYSGR-LLPDHLQLKDI 86 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTC--------------CEEETTE-EECTTSBTHHH
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhE--------------EEEECCE-ECCCCCCHHHH
Confidence 4599999999998 34 779999999999999987632 221122 5888887 55678899999
Q ss_pred --CCccCCEEEE
Q 030498 139 --GVRNNSQVQF 148 (176)
Q Consensus 139 --GIkngd~L~F 148 (176)
||.+|++|+.
T Consensus 87 ~~~I~~~~tihL 98 (99)
T 2kdb_A 87 LRKQDEYHMVHL 98 (99)
T ss_dssp HTTTCSEEEEEE
T ss_pred hcCCCCCCEEEe
Confidence 9999998875
No 73
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.60 E-value=1.8e-07 Score=71.99 Aligned_cols=85 Identities=9% Similarity=0.002 Sum_probs=61.5
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
.+..|.|+|...+|+.+ .|.++.||.+||..|+..+...- .++.+ + -.....|.|.|+ .++|+.+|.+|+
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dw-ke~ip--~----~~~~qrLIy~GK-~LeD~~TL~~y~ 85 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDW-EEEQV--S----SPNILRLIYQGR-FLHGNVTLGALK 85 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSC-CCCTT--C----CGGGEEEESSSS-EEESSCBTGGGC
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCccc-ccCCC--C----ChHHEEEEECCc-CCCCCCcHHHcC
Confidence 35569999999999988 89999999999999998542100 00000 0 023458999997 567889999999
Q ss_pred CccCCE--EEEEeeeec
Q 030498 140 VRNNSQ--VQFVPFVLS 154 (176)
Q Consensus 140 Ikngd~--L~Fk~~l~~ 154 (176)
|..|+. |+.+.++..
T Consensus 86 I~~~~~~tlhlv~r~~~ 102 (125)
T 2gow_A 86 LPFGKTTVMHLVARETL 102 (125)
T ss_dssp CCTTSEEEEEEEECSCC
T ss_pred CCCCCceEEEEEecCCC
Confidence 998884 666666654
No 74
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.57 E-value=1.5e-07 Score=67.71 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=55.0
Q ss_pred eEEEEEecCCc-ee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCC---cc---cccCcchhh
Q 030498 66 MRISILKLDGT-SF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN---QK---LLDENSALQ 136 (176)
Q Consensus 66 m~LtV~k~dG~-~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~---~k---L~dD~~~L~ 136 (176)
++|.|...... .+ .|+++.||.+||..|+.....-+.+| .|.|.+ .. |++|+.+|.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~q---------------rL~~~~~~g~~~~~l~~D~~tL~ 72 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCM---------------ELELYGADDKFYSKLDQEDALLG 72 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTC---------------BCEEECSSSCEEEECCCSSSBTT
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHe---------------EEEEeCCCCccccccCCCcCCHh
Confidence 78888877664 34 88999999999999999986544433 355543 33 578999999
Q ss_pred hcCCccCCEEEEEe
Q 030498 137 DCGVRNNSQVQFVP 150 (176)
Q Consensus 137 dyGIkngd~L~Fk~ 150 (176)
+|||.+|++|+.+.
T Consensus 73 ~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 73 SYPVDDGCRIHVID 86 (95)
T ss_dssp SSSCCTTCEEEEBC
T ss_pred HCCCCCCCEEEEEE
Confidence 99999999998865
No 75
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=9.2e-08 Score=69.00 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=53.5
Q ss_pred eEEEEEecCCcee--E--ecCcccHHHHHHHH-HHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 66 MRISILKLDGTSF--A--VMNSATVKDLKLAI-KKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 66 m~LtV~k~dG~~l--~--V~~~ATV~DLKkAI-~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
|.|+|...+|+.+ . |+++.||.+||..| +.... .|..+ ..|.|.|+ .++|+.+|.+|||
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g-ip~~~--------------QrLi~~Gk-~L~D~~tL~~y~I 65 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA-SHISE--------------IKLLLKGK-VLHDNLFLSDLKV 65 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC-SSSTT--------------EEEEETTE-ECCTTCBHHHHCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC-CChHH--------------EEEEECCE-ECcCcCCHHHcCC
Confidence 8999999999988 4 45999999999999 66543 23222 26889996 5677889999999
Q ss_pred -ccCCEEEEE
Q 030498 141 -RNNSQVQFV 149 (176)
Q Consensus 141 -kngd~L~Fk 149 (176)
.+|++|+..
T Consensus 66 ~~~~stl~v~ 75 (87)
T 2lxa_A 66 TPANSTITVM 75 (87)
T ss_dssp CGGGCEEEEE
T ss_pred CCCCCEEEEE
Confidence 699987644
No 76
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.55 E-value=2.7e-07 Score=70.25 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=63.8
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
..|.|+|...+|+.+ .|.++.||.+||..|+..+...- .++.+ .=-...+|.|.|. .++|+.+|.+|+|.
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dw-ke~~p------~p~~qqrLIy~GK-~LeD~~TL~~y~I~ 86 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDW-EEEQV------SSPNILRLIYQGR-FLHGNVTLGALKLP 86 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCS-SCCCC------CCTTTEEEEETTE-EECSSCBTTTTTCC
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhccccc-ccCCC------CChHHEEEEECCc-CCCCCCcHHHcCCC
Confidence 449999999999988 88999999999999998542100 00000 0012348999997 56788999999998
Q ss_pred cCCE--EEEEeeeecCCccccccc
Q 030498 142 NNSQ--VQFVPFVLSKGSGKHSKR 163 (176)
Q Consensus 142 ngd~--L~Fk~~l~~~~~~~~~~~ 163 (176)
.++. |+.+.|+..-....+.-|
T Consensus 87 ~~~~~tlhLvlr~~~~~~~~~~~~ 110 (116)
T 1wgh_A 87 FGKTTVMHLVARETLPEPNSQGQR 110 (116)
T ss_dssp SSCEEEEEEEECSSCSSSCCSSCC
T ss_pred CCCceEEEEEccCCCCCCCccccc
Confidence 8754 677777655444433333
No 77
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=2.4e-07 Score=68.69 Aligned_cols=69 Identities=10% Similarity=0.163 Sum_probs=55.5
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|-+.+++..|+.+ .|.+++||.+||..|+....--|.||. .+.+.+.+ ++|+..|.+|||++|
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~Qk--------------Li~~~~gk-L~D~~tLs~~~I~~g 73 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKML--------------LKGWKTGD-VEDSTVLKSLHLPKN 73 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCC--------------EECCSSSC-CCTTSBHHHHCCCSE
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeE--------------EEccCCCC-CCCcCCHHHcCCCCC
Confidence 7778888999999 889999999999999999876666554 22223344 577889999999999
Q ss_pred CEEEEE
Q 030498 144 SQVQFV 149 (176)
Q Consensus 144 d~L~Fk 149 (176)
++|+.+
T Consensus 74 stL~lv 79 (100)
T 2dzm_A 74 NSLYVL 79 (100)
T ss_dssp EEEEEC
T ss_pred CEEEEE
Confidence 998764
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.47 E-value=5e-07 Score=65.99 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=54.6
Q ss_pred ceEEEEEecCCc--ee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC--Cc---ccccCcchh
Q 030498 65 AMRISILKLDGT--SF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--NQ---KLLDENSAL 135 (176)
Q Consensus 65 Am~LtV~k~dG~--~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~--~~---kL~dD~~~L 135 (176)
-++|.|..-.++ .+ .|+++.||.+||..|+..+.--+..| .|.|. +. .|++|+.+|
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~Q---------------rL~~~~~g~~~~~L~~D~~tL 79 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTM---------------KVQVFKGDTCVSTMDNNDAQL 79 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTE---------------EEEEEETTEEEEECCCTTSBH
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHe---------------EEEEecCCcccceeCCCCCCH
Confidence 377888776664 55 88999999999999999985433322 45555 33 367899999
Q ss_pred hhcCCccCCEEEEEe
Q 030498 136 QDCGVRNNSQVQFVP 150 (176)
Q Consensus 136 ~dyGIkngd~L~Fk~ 150 (176)
.+|||.+|++|+.+.
T Consensus 80 ~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 80 GYYANSDGLRLHVVD 94 (95)
T ss_dssp HHHCCSSSCEEEEEE
T ss_pred hHCCcCCCCEEEEEC
Confidence 999999999998764
No 79
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.45 E-value=4.7e-07 Score=68.27 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=56.1
Q ss_pred ceEEEEEecCCc-ee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCC---c---ccccCcchh
Q 030498 65 AMRISILKLDGT-SF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN---Q---KLLDENSAL 135 (176)
Q Consensus 65 Am~LtV~k~dG~-~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~---~---kL~dD~~~L 135 (176)
.|+|.|....+. .+ .|++++||.+||..|+..+..-+.+| .|.|.+ . .|++|+.+|
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~q---------------rL~~~g~~~~~~~~l~~D~~tL 70 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSM---------------RIQLFDGDDQLKGELTDGAKSL 70 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTE---------------EEEEECSSSSEEEECCCCSSBT
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHe---------------EEEEecCCCccccccCCCcCCH
Confidence 488888887664 34 88999999999999999986544433 466654 3 246889999
Q ss_pred hhcCCccCCEEEEEe
Q 030498 136 QDCGVRNNSQVQFVP 150 (176)
Q Consensus 136 ~dyGIkngd~L~Fk~ 150 (176)
.+|||.+|++|+.+.
T Consensus 71 ~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 71 KDLGVRDGYRIHAVD 85 (122)
T ss_dssp TTTTCCSSEEEEEEE
T ss_pred HHCCCCCCCEEEEEe
Confidence 999999999999885
No 80
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.39 E-value=3.2e-07 Score=81.56 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=59.7
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhh--hhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVN--DMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~--~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
..|+|+|+.++|+.+ .|..+.||.+||..|+..+. -.+. ....|.|.|+ +++|+.+|.+||
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~--------------~~QrLiy~GK-~L~D~~tL~dyg 70 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV--------------AGQKLIYAGK-ILSDDVPIRDYR 70 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCS--------------TEEEEESSSS-EECSSSBTTTTC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCCh--------------hheEEEECCe-ecCCcCCHHHcC
Confidence 359999999999999 78899999999999998642 1221 2236889987 556778999999
Q ss_pred CccCCEE-EEEeeeec
Q 030498 140 VRNNSQV-QFVPFVLS 154 (176)
Q Consensus 140 Ikngd~L-~Fk~~l~~ 154 (176)
|++|+.| +.+.+.+.
T Consensus 71 I~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 71 IDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCTTSCEEEEEECCCS
T ss_pred CCCCCEEEEEEecCCC
Confidence 9999987 66666654
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.38 E-value=1.2e-06 Score=64.36 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=53.9
Q ss_pred eEEEEEecCCc--ee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCC---cc---cccCcchh
Q 030498 66 MRISILKLDGT--SF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN---QK---LLDENSAL 135 (176)
Q Consensus 66 m~LtV~k~dG~--~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~---~k---L~dD~~~L 135 (176)
++|.|..-..+ .+ .|+++.||.+||..|+..+.--|+.| .|.|.+ +. |++|+++|
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~Q---------------rLi~~g~~g~~~~~L~~D~~tL 79 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSM---------------ALELYDDSGSKVAVLSDDSRPL 79 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSE---------------EEEEECSSSCBCCCSSGGGSCH
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHe---------------EEEEecCCCcccceecCCcCCH
Confidence 77888765553 45 88999999999999999986444322 566655 22 57899999
Q ss_pred hhcCCccCCEEEEEe
Q 030498 136 QDCGVRNNSQVQFVP 150 (176)
Q Consensus 136 ~dyGIkngd~L~Fk~ 150 (176)
.+|||.+|++|+.+.
T Consensus 80 ~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 80 GFFSPFDGFRLHIID 94 (97)
T ss_dssp HHHCCCSCCEEEEEE
T ss_pred HHCCCCCCCEEEEEe
Confidence 999999999998765
No 82
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.37 E-value=7.6e-07 Score=64.08 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=54.1
Q ss_pred ceEEEEEe---cCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC-------CcccccCc
Q 030498 65 AMRISILK---LDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ-------NQKLLDEN 132 (176)
Q Consensus 65 Am~LtV~k---~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~-------~~kL~dD~ 132 (176)
.++|+|.. .+|..+ .|+.+.||.+||..|++.+..-+..+ .|.+. ...|.+|.
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q---------------~L~~~~~~~~~~~~~L~~d~ 73 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSEL---------------LLSYESSKMPGREIELENDL 73 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTC---------------EEEEECTTSCSCEEECCCSS
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHe---------------EEEEEcCCCCceeeccCCCc
Confidence 37787764 577777 88999999999999999996544322 23333 12367899
Q ss_pred chhhhcCCccCCEEEEEe
Q 030498 133 SALQDCGVRNNSQVQFVP 150 (176)
Q Consensus 133 ~~L~dyGIkngd~L~Fk~ 150 (176)
+.|.+|||.||++|++..
T Consensus 74 ~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 74 QPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp SBSGGGTCCTTCEEEEEC
T ss_pred ccHhhcCCCCCCEEEEEe
Confidence 999999999999998765
No 83
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.33 E-value=1.5e-06 Score=66.83 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=55.2
Q ss_pred eEEEEEecCCcee-EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCcc--
Q 030498 66 MRISILKLDGTSF-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN-- 142 (176)
Q Consensus 66 m~LtV~k~dG~~l-~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkn-- 142 (176)
|=|.|.+..-+.+ .|.++.||.+||..|+.....-+..| +|.|.|+ +++|+++|.||||.+
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQ---------------rLI~~Gk-~LeD~kTL~dy~I~~~t 66 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQ---------------RLYKDDQ-LLDDGKTLGECGFTSQT 66 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTSBTTTTTCCGGG
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHe---------------EEEeCCe-ECCCcCCHHHcCCCcCc
Confidence 3345555433333 88999999999999999876444322 6889886 788999999999999
Q ss_pred -----CCEEEEEeee
Q 030498 143 -----NSQVQFVPFV 152 (176)
Q Consensus 143 -----gd~L~Fk~~l 152 (176)
+++|+.+-|.
T Consensus 67 a~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 67 ARPQAPATVGLAFRA 81 (118)
T ss_dssp SBTTBCEEEEEEECC
T ss_pred ccCCCCCEEEEEEec
Confidence 9999999885
No 84
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.32 E-value=2.2e-06 Score=66.42 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=63.8
Q ss_pred ccCCceEEEEEecCCcee---EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 61 EMGSAMRISILKLDGTSF---AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l---~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
|-...|.|+|+..+|+.+ .|.++.||.+||..|....... .++.+ .-.....|.|.|. .++|+.+|.+
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~d--kegiP------~~~~qQrLIy~GK-~LeD~~TLsd 82 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPRE--KENGP------KTVKEVKLISAGK-VLENSKTVKD 82 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTT--CSSSC------CSGGGEEEEETTE-ECCTTSBGGG
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccc--cccCC------CChhhEEEEECCe-ECcCCCcHHH
Confidence 344789999999999877 7789999999999998765311 00000 0012347889996 6788899999
Q ss_pred cCCccC------CEEEEEeeeecC
Q 030498 138 CGVRNN------SQVQFVPFVLSK 155 (176)
Q Consensus 138 yGIkng------d~L~Fk~~l~~~ 155 (176)
|+|.+| .+++.+.++++-
T Consensus 83 y~I~~~~~~~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 83 YRSPVSNLAGAVTTMHVIIQAPVT 106 (126)
T ss_dssp GSCCTTSCTTCCEEEEEEECCCSS
T ss_pred cCCCcCCccCCcEEEEEEeccCCc
Confidence 999999 468888888753
No 85
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.28 E-value=2.1e-06 Score=65.82 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=55.6
Q ss_pred ceEEEEEecCCcee-EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc--
Q 030498 65 AMRISILKLDGTSF-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR-- 141 (176)
Q Consensus 65 Am~LtV~k~dG~~l-~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk-- 141 (176)
.|-|.|++..-+.. .|.++.||.+||..|+.....-+..| .|.|.|+ .++|+.+|.||||.
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQ---------------rLi~~Gk-~LeD~~TLsdy~I~~~ 65 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQ---------------RLYKDDQ-LLDDGKTLGECGFTSQ 65 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGE---------------EEEETTE-ECCTTSBHHHHTCCTT
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHe---------------EEEECCe-ECCCCCCHHHcCcccc
Confidence 46777776542233 89999999999999999875433322 6888886 67889999999999
Q ss_pred -----cCCEEEEEee
Q 030498 142 -----NNSQVQFVPF 151 (176)
Q Consensus 142 -----ngd~L~Fk~~ 151 (176)
++++|+.+-|
T Consensus 66 ~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 66 TARPQAPATVGLAFR 80 (118)
T ss_dssp TSBTTBCEEEEEEEB
T ss_pred cccCCCCCEEEEEec
Confidence 7999988877
No 86
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.24 E-value=2.8e-06 Score=60.88 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=50.5
Q ss_pred eEEEEE-ec-CCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC------CcccccCcchh
Q 030498 66 MRISIL-KL-DGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ------NQKLLDENSAL 135 (176)
Q Consensus 66 m~LtV~-k~-dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~------~~kL~dD~~~L 135 (176)
++|+|- +. +...+ .|+++.||.+||..|+..+.--|..| .|.|. ..++++|+.+|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~Q---------------rLi~~~~~~~~~g~~l~d~~tL 67 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYM---------------QLQLIDDRGITIEKNMANDKQL 67 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGE---------------EEEEECTTSCEEESSCCTTSBG
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHE---------------EEEEecCCCCceeeEcCCCCCH
Confidence 455554 22 33333 78999999999999999875433322 34332 13588999999
Q ss_pred hhcCCccCCEEEEEee
Q 030498 136 QDCGVRNNSQVQFVPF 151 (176)
Q Consensus 136 ~dyGIkngd~L~Fk~~ 151 (176)
.+|||+||++|+.+..
T Consensus 68 ~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 68 GYYQCRDEFVIHVVDL 83 (86)
T ss_dssp GGGTCCTTCEEEEEEC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998753
No 87
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.23 E-value=4.8e-06 Score=60.63 Aligned_cols=78 Identities=9% Similarity=0.141 Sum_probs=64.2
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
.+..|+|.|...+|+.+ .|.++.|+..|+.|++.+....+ .++.+.|+|+.| +++.++.+|+
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~---------------~~~rf~FdG~~l-~~~~Tp~dl~ 67 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM---------------RQIRFRFDGQPI-NETDTPAQLE 67 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG---------------GGEEEEETTEEC-CTTCCTTTTT
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc---------------ccEEEEECCEEc-CCCCCHHHcC
Confidence 35679999999999988 88999999999999988764322 345789999865 5568999999
Q ss_pred CccCCEEEEEeeeecC
Q 030498 140 VRNNSQVQFVPFVLSK 155 (176)
Q Consensus 140 Ikngd~L~Fk~~l~~~ 155 (176)
+.+||+|.+..+..+-
T Consensus 68 medgD~Idv~~~~~GG 83 (94)
T 2io1_B 68 MEDEDTIDVFQQQTGG 83 (94)
T ss_dssp CCTTCEEEEEECCEES
T ss_pred CCCCCEEEEEEeccCC
Confidence 9999999999888763
No 88
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.20 E-value=1.2e-06 Score=62.07 Aligned_cols=74 Identities=9% Similarity=0.171 Sum_probs=53.7
Q ss_pred CceEEEEEecCCcee-EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCC-ccc-ccCcchhhhcCC
Q 030498 64 SAMRISILKLDGTSF-AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQN-QKL-LDENSALQDCGV 140 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l-~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~-~kL-~dD~~~L~dyGI 140 (176)
.+|.|.|+..+|..- .|++++||.||+..|++.+..-...+ +..+.+.+ ..| ...+.+|.++||
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~-------------~l~~~~~p~~~l~~~~~~~l~~lgl 69 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGF-------------SVYINRNKTGEITASSSKSLHLLKI 69 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTC-------------CCCCSCCGGGGSSSCCCCTTTTTCC
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcc-------------eEEecCCCCCcccCCCCCCHHHcCC
Confidence 469999999999887 88899999999999999986422211 11222332 223 237789999999
Q ss_pred ccCCEEEEEe
Q 030498 141 RNNSQVQFVP 150 (176)
Q Consensus 141 kngd~L~Fk~ 150 (176)
++||.|++.+
T Consensus 70 ~hGd~l~l~~ 79 (80)
T 2pjh_A 70 KHGDLLFLFP 79 (80)
T ss_dssp CTTCCEEC--
T ss_pred CCCCEEEEec
Confidence 9999998764
No 89
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.15 E-value=4.2e-06 Score=72.79 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeee---cCCcccccCcchhhh
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS---HQNQKLLDENSALQD 137 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~---~~~~kL~dD~~~L~d 137 (176)
...|+|+|.- .|+.+ .|++++||.+||..|+....--|++|. |. |.|. ++.|+.+|.+
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~Qk---------------Li~~k~~Gk-~l~D~~~L~~ 65 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQK---------------LLNLKYKGK-TAADNVKISA 65 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCE---------------ETTCBSSSS-BCCTTSBTTS
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeE---------------EeecccCCc-ccCccccHHH
Confidence 4568999984 78888 889999999999999999876666554 33 5664 6778899999
Q ss_pred cCCccCCEEEEEe
Q 030498 138 CGVRNNSQVQFVP 150 (176)
Q Consensus 138 yGIkngd~L~Fk~ 150 (176)
|||++|++|+.+-
T Consensus 66 ~~ik~g~~l~L~g 78 (320)
T 3shq_A 66 LELKPNFKLMMVG 78 (320)
T ss_dssp SCCC--CEEEEEC
T ss_pred cCCCCCCEEEEEc
Confidence 9999999987653
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.11 E-value=1.1e-05 Score=58.53 Aligned_cols=77 Identities=8% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCC
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGV 140 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGI 140 (176)
++.|+|.|+..+|+.+ .|.++.|+..|+.|++......+ .++.+.|+|+.| +++.+..+|++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~---------------~~~rf~FdG~~l-~~~~Tp~dl~m 66 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM---------------RQIRFRFDGQPI-NETDTPAQLEM 66 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS---------------TTEEEEETTEEC-CTTCCTTTTTC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc---------------ccEEEEECCEEc-CCCCCHHHcCC
Confidence 6779999999999988 88999999999999987654322 356889999865 55689999999
Q ss_pred ccCCEEEEEeeeecC
Q 030498 141 RNNSQVQFVPFVLSK 155 (176)
Q Consensus 141 kngd~L~Fk~~l~~~ 155 (176)
.|||+|.+.....+-
T Consensus 67 edgD~Idv~~~q~gg 81 (91)
T 2io0_B 67 EDEDTIDVFQQQTGG 81 (91)
T ss_dssp CTTEEEEEEECCCCC
T ss_pred CCCCEEEEEEeccCC
Confidence 999999998877664
No 91
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.06 E-value=1.9e-05 Score=57.20 Aligned_cols=77 Identities=9% Similarity=0.134 Sum_probs=62.3
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
+.+..|+|.|...+|+.+ .|.++.++..|+.|++......+ .++.+.|+|+.| .++.+..+|
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~---------------~~~rf~fdG~~l-~~~~Tp~dl 76 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM---------------RQIRFRFDGQPI-NETDTPAQL 76 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG---------------GGEEEEETTEEC-CTTCCTTTT
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc---------------cceEEEECCEEc-CCCCCHHHc
Confidence 357789999999999877 88999999999999988764322 255899999865 566899999
Q ss_pred CCccCCEEEEEeeee
Q 030498 139 GVRNNSQVQFVPFVL 153 (176)
Q Consensus 139 GIkngd~L~Fk~~l~ 153 (176)
++.+||+|.+..+..
T Consensus 77 ~medgD~Idv~~~q~ 91 (93)
T 2d07_B 77 EMEDEDTIDVFQQQT 91 (93)
T ss_dssp TCCTTEEEEEEECC-
T ss_pred CCCCCCEEEEEeecc
Confidence 999999999877654
No 92
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=97.97 E-value=3.7e-05 Score=53.87 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=58.3
Q ss_pred cCCceEEEEEecCCc-ee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 62 MGSAMRISILKLDGT-SF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~-~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
.+..|+|.|+..+|+ .+ .|.++.++..|+.|++.+....+ .++.+.|+|+.| .++.+..+|
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~---------------~~~rf~fdG~~l-~~~~Tp~~l 67 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSG---------------HKLSFFFDGTKL-SGKELPADL 67 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTT---------------CCCEEEETTEEC-CSCCCHHHH
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCc---------------ccEEEEECCEEc-CCCCCHHHc
Confidence 356799999999996 66 88999999999999988764322 345789999865 556899999
Q ss_pred CCccCCEEEE
Q 030498 139 GVRNNSQVQF 148 (176)
Q Consensus 139 GIkngd~L~F 148 (176)
++.|||+|.+
T Consensus 68 ~medgD~Idv 77 (79)
T 3a4r_A 68 GLESGDLIEV 77 (79)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 9999999876
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=97.94 E-value=3e-05 Score=53.22 Aligned_cols=68 Identities=9% Similarity=0.171 Sum_probs=56.6
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|+|.|...+|+.+ .|.++.++..|+.|++.+....+ .++.+.|+|+.| +++.+..+||+.+|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~---------------~~~rf~fdG~~l-~~~~Tp~~l~medg 65 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM---------------RQIRFRFDGQPI-NETDTPAQLEMEDE 65 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT---------------TTCEEEETTEEC-CTTCCTTTTTCCTT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc---------------ceEEEEECCEEc-CCCCCHHHcCCCCC
Confidence 8999999999988 88999999999999987754322 345789999865 55689999999999
Q ss_pred CEEEEE
Q 030498 144 SQVQFV 149 (176)
Q Consensus 144 d~L~Fk 149 (176)
|+|.+.
T Consensus 66 D~Idv~ 71 (72)
T 1wm3_A 66 DTIDVF 71 (72)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 998764
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.90 E-value=4.7e-05 Score=56.59 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=64.2
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
+.+..|+|.|...+|+.+ .|.++.++..|+.|++.+....+ .++.+.|+|+.| .++.+..+|
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~---------------~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM---------------RQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT---------------TTSCEESSSSBC-CTTSCTTTT
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc---------------ceEEEEECCEEc-CCCCCHHHc
Confidence 356789999999999887 88999999999999988764422 234788999865 566899999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
++.+||+|.+..+..+
T Consensus 84 ~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 84 EMEDEDTIDVFQQQTS 99 (104)
T ss_dssp TCCTTEEEEECCCCCC
T ss_pred CCCCCCEEEEEEeccC
Confidence 9999999999877654
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=97.84 E-value=4.5e-05 Score=57.42 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=64.0
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
..+..|+|.|+..+|+.+ .|.++.++..|+.|++......+ .++.+.|+|+.|. ++.+..+|
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~---------------~~~rfiFdG~~L~-~~~Tp~dl 85 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR---------------NSVRFLFDGTPID-ETKTPEEL 85 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS---------------SSCEEESSSCBCC-SSSHHHHH
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc---------------ccEEEEECCEEcC-CCCCHHHc
Confidence 356779999999999988 88999999999999988764322 3458899998654 56899999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
++.+||+|.+.....+
T Consensus 86 ~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 86 GMEDDDVIDAMVEQTG 101 (110)
T ss_dssp HCSSEEEEEEECCCCC
T ss_pred CCCCCCEEEEEEcccC
Confidence 9999999998877654
No 96
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=97.74 E-value=9.6e-05 Score=55.32 Aligned_cols=77 Identities=6% Similarity=0.152 Sum_probs=62.2
Q ss_pred hccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 60 LEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 60 le~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
...+..|+|.|.. +|+.+ .|..+.++..|+.|++.+....+ .++.+.|+|+.| +++.+..+
T Consensus 26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~---------------~~~rF~FdG~rl-~~~~Tp~d 88 (106)
T 2eke_C 26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM---------------DSLRFLYDGIRI-QADQTPED 88 (106)
T ss_dssp CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG---------------GGEEEEETTEEC-CTTCCTTT
T ss_pred CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCc---------------ccEEEEECCeEc-CCCCCHHH
Confidence 3466789999999 99888 88999999999999887764322 356889999865 55689999
Q ss_pred cCCccCCEEEEEeeee
Q 030498 138 CGVRNNSQVQFVPFVL 153 (176)
Q Consensus 138 yGIkngd~L~Fk~~l~ 153 (176)
||+.+||+|.+..+..
T Consensus 89 l~medgD~Idv~~~q~ 104 (106)
T 2eke_C 89 LDMEDNDIIEAHREQI 104 (106)
T ss_dssp TTCCTTEEEEEEECC-
T ss_pred cCCCCCCEEEEEeecc
Confidence 9999999998876654
No 97
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.60 E-value=1.2e-05 Score=66.12 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred eEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|.|+|..++|+.+ .|.++.||.+||..|+.....-+. + ..|.|.|.. ++|+.+|. ++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~-q--------------QRLIf~GK~-LeD~~TLs-----~~ 59 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEID-M--------------MTLVNNGFI-APNTELVT-----DD 59 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChh-H--------------EEEEecCeE-CCCCCccc-----CC
Confidence 7899999999998 889999999999999988654333 2 268888874 56677887 99
Q ss_pred CEEEEEeeeec
Q 030498 144 SQVQFVPFVLS 154 (176)
Q Consensus 144 d~L~Fk~~l~~ 154 (176)
++|+.+-|+++
T Consensus 60 STLhLvlRLrG 70 (189)
T 2xzm_9 60 VTYYLSLKLLG 70 (189)
T ss_dssp -----------
T ss_pred CEEEEEEecCC
Confidence 99999988865
No 98
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.51 E-value=0.00022 Score=51.39 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=56.1
Q ss_pred cCCceEEEEEe--cCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCc-ccccCcchhh
Q 030498 62 MGSAMRISILK--LDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQ-KLLDENSALQ 136 (176)
Q Consensus 62 ~G~Am~LtV~k--~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~-kL~dD~~~L~ 136 (176)
+|.-|.||+.. -.|+.+ .||..-||..|...+-+.+..-..+..| ||+.-.++ .++.+++.|.
T Consensus 1 ~~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~------------~~irv~NK~~~L~~~~~L~ 68 (81)
T 2bps_A 1 HGSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREG------------HWIRVVNKDKVFSGECKLS 68 (81)
T ss_dssp CCCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTT------------CEEEEGGGTEEEETTSBTG
T ss_pred CCcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCC------------CEEEEecCCEEEcCCCEEe
Confidence 35667888875 567888 8999999999999999999764333222 35555543 4678999999
Q ss_pred hcCCccCCEEE
Q 030498 137 DCGVRNNSQVQ 147 (176)
Q Consensus 137 dyGIkngd~L~ 147 (176)
||||+|||.|.
T Consensus 69 d~~ItnGD~Le 79 (81)
T 2bps_A 69 DCGITNGDRLE 79 (81)
T ss_dssp GGTCCTTCEEE
T ss_pred eCCcCCCCEEE
Confidence 99999999875
No 99
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.23 E-value=0.0012 Score=50.31 Aligned_cols=93 Identities=14% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCcccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCcccccccee
Q 030498 39 DPILADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVW 116 (176)
Q Consensus 39 Dp~L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW 116 (176)
+...+|-+..++.++..-. ..+.-|+|.|+..+|..+ .|..+.++.-|+.|+....... .
T Consensus 17 ~~~~~~~~~~~~~~~~~~k---~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~---------------~ 78 (115)
T 3kyd_D 17 RSHMSDQEAKPSTEDLGDK---KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP---------------M 78 (115)
T ss_dssp -------------------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC---------------T
T ss_pred CCccccccccCccccccCC---CCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC---------------h
Confidence 3344455555544433211 126789999999999987 8899999999999988776431 1
Q ss_pred eeeeeecCCcccccCcchhhhcCCccCCEEEEEe
Q 030498 117 ANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVP 150 (176)
Q Consensus 117 ~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~ 150 (176)
+++.+.|+|+.| +++.+..++|+.|||+|.+..
T Consensus 79 ~~irFlFDG~rI-~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 79 NSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp TSEEEEETTEEC-CTTCCTTTTTCCTTCEEEEEE
T ss_pred hhEEEEECCeEC-CCCCCHHHcCCCCCCEEEEEe
Confidence 356888999965 557899999999999987654
No 100
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.90 E-value=0.0044 Score=45.04 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=52.5
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
.-+++-+++-...-+ .|+.++||.+|=+|+..... |||. ..+.|.|+|.. ++.++++.||++.
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~-----------I~~~---~~IrllFDGdR-Ldp~~tp~Dleme 72 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK-----------ISFH---ERIRLEFEGEW-LDPNDQVQSTELE 72 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT-----------CCCC---TTCEEEETTEE-CCTTSBGGGSSCC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC-----------CCcC---ceEEEEEcCcc-cCccCChhhhCCc
Confidence 446676666555545 99999999999888877653 3332 14578999985 6678899999999
Q ss_pred cCCEEEE
Q 030498 142 NNSQVQF 148 (176)
Q Consensus 142 ngd~L~F 148 (176)
|||+|-.
T Consensus 73 D~D~IDv 79 (82)
T 3goe_A 73 DEDQVSV 79 (82)
T ss_dssp TTCEEEE
T ss_pred CCceeee
Confidence 9999754
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0099 Score=48.99 Aligned_cols=77 Identities=6% Similarity=0.120 Sum_probs=62.2
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
..+.-|+|.|. .+|..+ .|..+.++..|+.|+....... ++++.+.|+|++|. ++.+..++
T Consensus 25 ~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~---------------~~~~RF~FdG~rI~-~~~TP~dL 87 (200)
T 3pge_A 25 KPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE---------------MDSLRFLYDGIRIQ-ADQTPEDL 87 (200)
T ss_dssp CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC---------------GGGEEEEETTEECC-TTCCTTTT
T ss_pred CCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC---------------hhhEEEEECCEEcC-CCCCHHHc
Confidence 45788999995 688888 8899999999999998765331 24568899998655 57799999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
|+.|||+|.+.....+
T Consensus 88 ~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 88 DMEDNDIIEAHREQIG 103 (200)
T ss_dssp TCCTTEEEEEEECCSC
T ss_pred CCCCCCEEEEEeccCc
Confidence 9999999988877654
No 102
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.011 Score=49.26 Aligned_cols=77 Identities=6% Similarity=0.117 Sum_probs=61.5
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
..+.-|+|.|. .+|..+ .|..+.++.-|+.|+.......+ +++.+.|+|++|. ++.+..++
T Consensus 53 dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~---------------~sIRFLFDGqRI~-~ddTPeDL 115 (207)
T 3tix_A 53 KPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM---------------DSLTFLYDGIEIQ-ADQTPEDL 115 (207)
T ss_dssp --CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG---------------GGSCEEETTEECC-SSCCTTTT
T ss_pred CCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc---------------ccEEEEECCeecC-CCCCHHHc
Confidence 44788999996 689888 88999999999999988764322 3457889998655 57899999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
++.|||+|.+.....+
T Consensus 116 dMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 116 DMEDNDIIEAHREQIG 131 (207)
T ss_dssp TCCTTEEEEECCCCCT
T ss_pred CCCCCCEEEEEEeccC
Confidence 9999999988877755
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=95.82 E-value=0.036 Score=40.71 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=56.9
Q ss_pred hhccCCceEEEEEecCCc-ee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchh
Q 030498 59 SLEMGSAMRISILKLDGT-SF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSAL 135 (176)
Q Consensus 59 ale~G~Am~LtV~k~dG~-~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L 135 (176)
+-+.+..|+|.|+..+|. .+ .|..+.++.-|-.|+.+..... .+++.+.|+|++| +.+.+-
T Consensus 19 ~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~---------------~~~vrF~FDG~rI-~~~~TP 82 (97)
T 2jxx_A 19 STETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS---------------GRKLSFFFDGTKL-SGRELP 82 (97)
T ss_dssp -CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS---------------SSCCEEEETTEEC-CSCSCH
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC---------------cccEEEEECCEEc-CCCCCH
Confidence 345677899999999995 44 8889999888888876654321 2456889999965 556799
Q ss_pred hhcCCccCCEEEE
Q 030498 136 QDCGVRNNSQVQF 148 (176)
Q Consensus 136 ~dyGIkngd~L~F 148 (176)
.++|+.|||+|-+
T Consensus 83 ~dLdMEDgD~IDv 95 (97)
T 2jxx_A 83 ADLGMESGDLIEV 95 (97)
T ss_dssp HHHTCCTTEEEEE
T ss_pred HHcCCCCCCEEEE
Confidence 9999999999865
No 104
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.68 E-value=0.028 Score=43.47 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=29.6
Q ss_pred EEEEEecCCcee--EecCcccHHHHHHHHHHHhhh
Q 030498 67 RISILKLDGTSF--AVMNSATVKDLKLAIKKKVND 99 (176)
Q Consensus 67 ~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~ 99 (176)
.|.|.-.||+.. .|+.++||.+|+..|.+.+..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI 47 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI 47 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCC
Confidence 588889999988 789999999999999999864
No 105
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.40 E-value=0.04 Score=40.46 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=55.4
Q ss_pred hhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhh
Q 030498 59 SLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQ 136 (176)
Q Consensus 59 ale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~ 136 (176)
|..-|.+|.|+|..-+|... -|.++.|+.|+=...-++|.+. +..|+|.+.++ .+|-.-.++
T Consensus 3 ~~~~~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~---------------~~~~~Lkh~~k-~lDLSlpfR 66 (90)
T 2al3_A 3 APAGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN---------------PSEYDLKFQRT-VLDLSLQWR 66 (90)
T ss_dssp -------CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC---------------GGGCEEEETTE-EESSSCBHH
T ss_pred ccccCCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC---------------hhhCeEEeCCE-eccccceeE
Confidence 44568889999999999888 6789999999544444445432 23568999885 678888999
Q ss_pred hcCCccCCEEEEEeee
Q 030498 137 DCGVRNNSQVQFVPFV 152 (176)
Q Consensus 137 dyGIkngd~L~Fk~~l 152 (176)
=.||-||+.|.-+..=
T Consensus 67 lsgLpnnAkLELv~~s 82 (90)
T 2al3_A 67 FANLPNNAKLEMVPVS 82 (90)
T ss_dssp HHCCCSSCEEEEECSS
T ss_pred ecCCCCCCEEEEEEcc
Confidence 9999999999877643
No 106
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.97 E-value=0.15 Score=37.46 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=62.0
Q ss_pred cCCCCCCCHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeee
Q 030498 43 ADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYC 120 (176)
Q Consensus 43 ~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~ 120 (176)
..||.+|..++ ....+|.|+--||+.+ ....+.||.+|-..|...- +.+..|.
T Consensus 10 ~~lp~EP~~~~---------~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~----------------~~~~~f~ 64 (109)
T 2cr5_A 10 PDLPEEPSETA---------EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG----------------YHKSLYR 64 (109)
T ss_dssp CCCCCCCCSSC---------SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT----------------CCTTTEE
T ss_pred ccCCCCCCCCC---------CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC----------------CCCCCeE
Confidence 46888886431 3578999999999988 8889999999999988531 1123455
Q ss_pred ee--cCCcccc-cCcchhhhcCCccCCEEEEEeee
Q 030498 121 LS--HQNQKLL-DENSALQDCGVRNNSQVQFVPFV 152 (176)
Q Consensus 121 L~--~~~~kL~-dD~~~L~dyGIkngd~L~Fk~~l 152 (176)
|. |-.+.|. +.+.+|.+.|+.++..|.....-
T Consensus 65 L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 65 LSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp EECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred EEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 53 3355565 57899999999999987665543
No 107
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=94.79 E-value=0.12 Score=35.80 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=52.1
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeee--cCCcccc--cCcchhhh
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLL--DENSALQD 137 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~--~~~~kL~--dD~~~L~d 137 (176)
...+|.|+--||+.+ ....+.||.+|...|...- + -+..|.|. |-.+.+. |.+++|.|
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~--~--------------~~~~f~L~t~fPrk~l~~~d~~~TL~e 69 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG--F--------------PWDEYKLLSTFPRRDVTQLDPNKSLLE 69 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTT--C--------------CTTTEEEECSSSCCBGGGSCTTSBTTT
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcC--C--------------CCCCeEEEeCCCCCCCcCCCCCCCHHH
Confidence 347899999999988 8889999999999998621 1 12344554 3344454 66789999
Q ss_pred cCCccCCEEEEE
Q 030498 138 CGVRNNSQVQFV 149 (176)
Q Consensus 138 yGIkngd~L~Fk 149 (176)
.|+.+++.|...
T Consensus 70 ~gL~p~a~L~ve 81 (84)
T 3qx1_A 70 VKLFPQETLFLE 81 (84)
T ss_dssp TTCCSEEEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 999999987764
No 108
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=94.31 E-value=0.0076 Score=50.88 Aligned_cols=77 Identities=6% Similarity=0.125 Sum_probs=0.0
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
+.+.-|+|.| ..+|+.+ .|.++.++.-|+.|+.+.....+ +++.+.|+|+++. ++.+..++
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~---------------~siRFLFDGqRI~-dddTPadL 79 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM---------------DSLRFLYDGIRIQ-ADQTPEDL 79 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCc---------------cceEEEECCEecC-CCCCHHHc
Confidence 4467899999 8899888 88899999999999887764322 3457889998655 57799999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
|+.|||+|.+.....+
T Consensus 80 ~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 80 DMEDNDIIEAHREQIG 95 (227)
T ss_dssp ----------------
T ss_pred CCCCCCEEEEEecccC
Confidence 9999999988766544
No 109
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=93.98 E-value=0.26 Score=35.74 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=48.7
Q ss_pred CceEEEEEecCCceeEec---CcccHHHH-HHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcC
Q 030498 64 SAMRISILKLDGTSFAVM---NSATVKDL-KLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCG 139 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l~V~---~~ATV~DL-KkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyG 139 (176)
++|+|+|+.+ +..++|| .+-||.+| ++|+.++....+.. .=+|-+|= .|...+-.|+|.+..|.|-
T Consensus 1 ~~MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~-----~~~~v~V~---~l~~~~ggiLD~DD~l~dV- 70 (85)
T 2ns5_A 1 SEFKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKD-----PNYWIQVH---RLEHGDGGILDLDDILCDV- 70 (85)
T ss_dssp CCEEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCC-----TTSCEEEE---EEECSSSCEECTTSCHHHH-
T ss_pred CccEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCC-----CCcEEEEE---EEEeCCCcEeCcccchhhh-
Confidence 4799999998 4555665 34699998 77788877655542 11344432 2344555688888888887
Q ss_pred CccCCEEE
Q 030498 140 VRNNSQVQ 147 (176)
Q Consensus 140 Ikngd~L~ 147 (176)
+.|+++|.
T Consensus 71 ldD~e~i~ 78 (85)
T 2ns5_A 71 ADDKDRLV 78 (85)
T ss_dssp SCTTEEEE
T ss_pred ccCcceEE
Confidence 55777754
No 110
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.95 E-value=0.16 Score=41.30 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=53.0
Q ss_pred eEEEEEecCCcee----EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCc
Q 030498 66 MRISILKLDGTSF----AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVR 141 (176)
Q Consensus 66 m~LtV~k~dG~~l----~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIk 141 (176)
+.+++.+.+.... .+...+||.+|++.+.+.|..-++++. .+|.-|-- ...+.|.+++.+|.|++|.
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~--------RlW~~~~~-~~~~~L~~~~~tl~~~~l~ 198 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKET--------RLWNKYMS-NTFEPLNKPDSTIQDAGLY 198 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCE--------EEEEEEET-TEEEECCCTTSBHHHHTCC
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCce--------EEEEecCC-CCeeecCCCCCCHHHhCCC
Confidence 4555555543311 557889999999999999976444333 57765531 1123455667899999999
Q ss_pred cCCEEEEEeee
Q 030498 142 NNSQVQFVPFV 152 (176)
Q Consensus 142 ngd~L~Fk~~l 152 (176)
+|.+|.+-.|-
T Consensus 199 ~~Q~illE~r~ 209 (217)
T 4a3p_A 199 QGQVLVIEQKN 209 (217)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEec
Confidence 99998877664
No 111
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=93.45 E-value=0.43 Score=35.04 Aligned_cols=72 Identities=21% Similarity=0.358 Sum_probs=54.4
Q ss_pred ceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeec--CCcccc--cCcchhhhc
Q 030498 65 AMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH--QNQKLL--DENSALQDC 138 (176)
Q Consensus 65 Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~--~~~kL~--dD~~~L~dy 138 (176)
..+|.|+--||+.+ ....+.||.||...|...... -+..|.|.. -.+.+. |.+++|.|.
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~---------------~~~~f~L~t~fPrk~l~~~d~~~TL~el 77 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGN---------------TYGNFSLATMFPRREFTREDYKRRLLDL 77 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTT---------------SSCSCEEECSSSCCBCCTTTTTSBTGGG
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCC---------------CCCceEEEcCCCCcCCcccccCCCHHHC
Confidence 58999999999988 889999999999999887411 123344443 344344 457899999
Q ss_pred CCccCCEEEEEee
Q 030498 139 GVRNNSQVQFVPF 151 (176)
Q Consensus 139 GIkngd~L~Fk~~ 151 (176)
|+.++..|.+...
T Consensus 78 gL~psa~L~v~~~ 90 (109)
T 2dzk_A 78 ELAPSASVVLLPA 90 (109)
T ss_dssp TCSSEEEEEEECC
T ss_pred CCCCceEEEEEEC
Confidence 9999998888764
No 112
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.32 E-value=0.27 Score=37.09 Aligned_cols=74 Identities=24% Similarity=0.337 Sum_probs=54.3
Q ss_pred hhhccCC-ceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeee--cCCcccccCc
Q 030498 58 ISLEMGS-AMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKLLDEN 132 (176)
Q Consensus 58 Iale~G~-Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~--~~~~kL~dD~ 132 (176)
+.+..++ ..+|.|+--||+.+ ....+.||.||..-|......+. +..|.|. |-...+.|++
T Consensus 44 ~~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--------------~~~f~L~t~fPrk~l~d~~ 109 (127)
T 1s3s_G 44 ILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--------------ATSFVLMTTFPNKELADEN 109 (127)
T ss_dssp SCCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--------------TSCEEEEETTTTEECCSTT
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--------------CCCeEEecCCCCCCCCCCC
Confidence 4455544 58899999999988 78899999999999988742211 2344544 4455566778
Q ss_pred chhhhcCCccCCE
Q 030498 133 SALQDCGVRNNSQ 145 (176)
Q Consensus 133 ~~L~dyGIkngd~ 145 (176)
.+|.|.|+.+...
T Consensus 110 ~TL~eagL~psav 122 (127)
T 1s3s_G 110 QTLKEANLLNAVI 122 (127)
T ss_dssp CBHHHHTCSSCEE
T ss_pred CcHHHCCCcCceE
Confidence 9999999999754
No 113
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=92.75 E-value=0.28 Score=42.07 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=50.0
Q ss_pred eEEEEEecCC-ceeEecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC---Ccc--cccCcchhhhcC
Q 030498 66 MRISILKLDG-TSFAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ---NQK--LLDENSALQDCG 139 (176)
Q Consensus 66 m~LtV~k~dG-~~l~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~---~~k--L~dD~~~L~dyG 139 (176)
++|.+. +- +.+.+.+++||.|.-+.|.+.++.... | -|..|.|.-. +++ -++++++|..||
T Consensus 6 ~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~---~--------~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~ 72 (371)
T 3ivf_A 6 LKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALA---G--------PPNDFGLFLSDDDPKKGIWLEAGKALDYYM 72 (371)
T ss_dssp EEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGS---S--------CGGGEEEEECCSSGGGCEECCTTSBGGGGT
T ss_pred EEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccC---C--------CHHHCeEeccCCCCCcCEeccCCCCHHHhC
Confidence 445554 22 233889999999999999998854311 1 2455555542 221 245566999999
Q ss_pred CccCCEEEEEeee
Q 030498 140 VRNNSQVQFVPFV 152 (176)
Q Consensus 140 Ikngd~L~Fk~~l 152 (176)
+++|+.|.|.+.-
T Consensus 73 ~~~~~~l~~~~~~ 85 (371)
T 3ivf_A 73 LRNGDTMEYRKKQ 85 (371)
T ss_dssp CCTTCEEEEEECE
T ss_pred CCCCceeeccCce
Confidence 9999999998654
No 114
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.28 E-value=0.35 Score=39.68 Aligned_cols=64 Identities=16% Similarity=0.312 Sum_probs=44.9
Q ss_pred ecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeee
Q 030498 80 VMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFV 152 (176)
Q Consensus 80 V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l 152 (176)
+...+||.+|++.+.+.+..-++++- .+|.-+--. ....|.+.+.+|.+++|.+|.+|..--+.
T Consensus 158 ~Sk~~ti~~l~~~~~~~~~i~~~~~~--------RLW~~~~~~-~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 158 FSKADTIATIEKEMRKLFNIPAERET--------RLWNKYMSN-TYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp ECTTCBHHHHHHHHHHHTTCCTTSCE--------EEEECSSSS-SCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred ecccCcHHHHHHHHHHHhCCCCCCeE--------EEEEecCCC-CHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 36778999999999999976443222 355533221 11345667799999999999998876654
No 115
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=91.64 E-value=0.74 Score=34.65 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=54.6
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeee--cCCccc--ccCcchhh
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLS--HQNQKL--LDENSALQ 136 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~--~~~~kL--~dD~~~L~ 136 (176)
....+|.|+--||+.+ ....+.||.+|...|... -+ -+..|.|. |-.+.| .|.+.+|.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--~~--------------~~~~F~L~t~fPrk~l~~~d~~~TL~ 104 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GY--------------PNERFELLTNFPRRKLSHLDYDITLQ 104 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HC--------------CTTTEEEECSSSCCEETSSCSSSCTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CC--------------CCCCeEEecCCCCcCCccCCCCCCHH
Confidence 3468999999999988 888999999999999764 11 12345554 334445 35689999
Q ss_pred hcCCccCCEEEEEee
Q 030498 137 DCGVRNNSQVQFVPF 151 (176)
Q Consensus 137 dyGIkngd~L~Fk~~ 151 (176)
+.|+.+...|.+.+.
T Consensus 105 e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 105 EAGLCPQETVFVQES 119 (124)
T ss_dssp TTTCCSSBCCEEEEC
T ss_pred HCCCCCceEEEEEEc
Confidence 999999988877654
No 116
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.73 E-value=2.4 Score=29.87 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCceEEEEEecC------C-cee--EecCcccHHHHHHHHHHHhhhhhhc---ccCCccccccceeeeeeeecCCccccc
Q 030498 63 GSAMRISILKLD------G-TSF--AVMNSATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQKLLD 130 (176)
Q Consensus 63 G~Am~LtV~k~d------G-~~l--~V~~~ATV~DLKkAI~~~~~~~~~R---q~G~~~ISW~~VW~~f~L~~~~~kL~d 130 (176)
-.+|+|+|+-.- | ... +++..+||.||...+...+...... ..|. +. ..+...-+....+
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~-------~~-~~v~v~VNg~~v~ 78 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYD-------ED-ADVNIAVNGRYVS 78 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSC-------TT-SSBEEEETTBCCC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccc-------cC-CcEEEEECCEECC
Confidence 356888887532 1 222 6678899999999988776422211 0010 00 1122233333333
Q ss_pred CcchhhhcCCccCCEEEEEeeee
Q 030498 131 ENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 131 D~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
.++-+++||+|.|.+-+.
T Consensus 79 -----~~~~L~dGDeV~i~ppv~ 96 (98)
T 1vjk_A 79 -----WDEELKDGDVVGVFPPVS 96 (98)
T ss_dssp -----TTCBCCTTCEEEEESCC-
T ss_pred -----CCCCCCCCCEEEEECCCC
Confidence 267899999999988664
No 117
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=88.11 E-value=0.094 Score=46.70 Aligned_cols=77 Identities=6% Similarity=0.135 Sum_probs=0.0
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
+.+.-|+|.|.. +|+.+ .|..+.++..|+.|+.+.....+ +++.+.|+|++|. ++.+..++
T Consensus 17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~---------------~~~rFlFdG~rI~-~~~TP~~L 79 (360)
T 3ix6_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM---------------DSLRFLYDGIRIQ-ADQTPEDL 79 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCc---------------ceEEEEECCeECC-CCCChHHc
Confidence 346678999986 67766 88899999999999877754322 3557889998655 56899999
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
|+.|||+|.+.....+
T Consensus 80 ~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 80 DMEDNDIIEAHREQIG 95 (360)
T ss_dssp ----------------
T ss_pred CCCccchhhhhhccCc
Confidence 9999999987766543
No 118
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=86.92 E-value=7 Score=28.71 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=54.0
Q ss_pred hccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhh
Q 030498 60 LEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQD 137 (176)
Q Consensus 60 le~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~d 137 (176)
.+.+..|+|.|+. +|... -|..+.-..-|..|........+ ++....|+|+++. ++.+-.+
T Consensus 16 ~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~---------------~sirFlfDG~rI~-~~~TP~~ 78 (95)
T 2l76_A 16 PETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSP---------------SRILLLFGETELS-PTATPRT 78 (95)
T ss_dssp CSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCG---------------GGEEEEETTEECC-TTSCHHH
T ss_pred CCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCCh---------------hhEEEEECCcCCC-CCCCHhH
Confidence 6678889999996 45554 88888888878777665554332 2346789999764 5668899
Q ss_pred cCCccCCEEEEE
Q 030498 138 CGVRNNSQVQFV 149 (176)
Q Consensus 138 yGIkngd~L~Fk 149 (176)
+|+.|||+|-+.
T Consensus 79 L~meD~DiID~~ 90 (95)
T 2l76_A 79 LKLGVADIIDCV 90 (95)
T ss_dssp HTCCSSCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 999999998654
No 119
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=86.75 E-value=0.91 Score=31.21 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=38.4
Q ss_pred EecCcccHHHHHHHHHHHhhhhhhc---ccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeeee
Q 030498 79 AVMNSATVKDLKLAIKKKVNDMEQS---NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 79 ~V~~~ATV~DLKkAI~~~~~~~~~R---q~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
.++..+||.||..++...+.....+ ..|. ++.++..+-+....+. ++-+++||+|.|.+-+.
T Consensus 23 ~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~--------l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 23 DVDGDATVGDALDALVGAHPALESRVFGDDGE--------LYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp ECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSC--------BCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred ECCCCCcHHHHHHHHHHHCcHHHHHHhccCCc--------ccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 5667899999999998876432110 1111 1222344444434432 56799999999998764
No 120
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=84.46 E-value=3.1 Score=33.44 Aligned_cols=75 Identities=7% Similarity=0.141 Sum_probs=58.2
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
..+.-|+|.|.. +|+.+ .|..+.++.-|+.|........+. ++.+.|++++ ++++.+-.+.
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~---------------~~~f~fdG~~-i~~~~Tpk~L 79 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD---------------SLRFLYDGIR-IQADQTPEDL 79 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGG---------------GCEEEETTEE-CCTTCCTTTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChh---------------eEEEEECCEe-ccCCCChHHh
Confidence 456779999987 77776 889999999999999888754332 3478899986 5567799999
Q ss_pred CCccCCEEEEEeee
Q 030498 139 GVRNNSQVQFVPFV 152 (176)
Q Consensus 139 GIkngd~L~Fk~~l 152 (176)
.+.|+|++......
T Consensus 80 ~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 80 DMEDNDIIEAHREQ 93 (209)
T ss_dssp TCCTTEEEEEECSC
T ss_pred hhcccccchhhccc
Confidence 99999998655443
No 121
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=83.81 E-value=0.21 Score=43.33 Aligned_cols=76 Identities=8% Similarity=0.159 Sum_probs=0.0
Q ss_pred ccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 61 EMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
+.+.-|+|.|+. +|..+ .|..+.++.-|+++...+....+. ++.+.|+|++| .++.+-.++
T Consensus 26 ~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~---------------~~~f~f~G~~i-~~~~Tp~~l 88 (389)
T 4da1_A 26 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD---------------SLRFLYDGIRI-QADQAPEDL 88 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcc---------------eEEEEECCEEc-CCCCCHHHc
Confidence 356778999987 67665 888999999999999888754322 35788999865 466899999
Q ss_pred CCccCCEEEEEeeee
Q 030498 139 GVRNNSQVQFVPFVL 153 (176)
Q Consensus 139 GIkngd~L~Fk~~l~ 153 (176)
|+.|||+|.+.....
T Consensus 89 ~med~d~i~~~~~q~ 103 (389)
T 4da1_A 89 DMEDNDIIEAHREQI 103 (389)
T ss_dssp ---------------
T ss_pred CCCCCCEeeeeeccc
Confidence 999999987665554
No 122
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.74 E-value=6.6 Score=32.46 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=53.6
Q ss_pred hccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeec--CCc-ccccCcch
Q 030498 60 LEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSH--QNQ-KLLDENSA 134 (176)
Q Consensus 60 le~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~--~~~-kL~dD~~~ 134 (176)
-..++.+.+.|.-.|| .+ .|..++|+.||=..|.+...+... .-|.|.+ +++ ..++.+++
T Consensus 17 ~~~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~--------------~~FgL~~~~~~~~~wL~~~~~ 81 (314)
T 1h4r_A 17 RKQPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRET--------------WFFGLQYTIKDTVAWLKMDKK 81 (314)
T ss_dssp ----CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCG--------------GGEEEEEEETTEEEECCTTSB
T ss_pred CCCCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCC--------------ccceEEEEeCCcCeeCCCccC
Confidence 3358899999999999 56 888999999999999998865321 1234443 222 23677788
Q ss_pred hhhcCCccCCEEEEEeeee
Q 030498 135 LQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 135 L~dyGIkngd~L~Fk~~l~ 153 (176)
|.+.+++.+..+.|.-|++
T Consensus 82 i~~q~~~~~~~~~l~fr~k 100 (314)
T 1h4r_A 82 VLDHDVSKEEPVTFHFLAK 100 (314)
T ss_dssp GGGSSCCCSSSEEEEEEES
T ss_pred HHHcCCCCCCCEEEEEEEE
Confidence 8888877776655544443
No 123
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=82.49 E-value=3.5 Score=27.53 Aligned_cols=59 Identities=19% Similarity=0.471 Sum_probs=34.6
Q ss_pred eeEecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeeeec
Q 030498 77 SFAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 77 ~l~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l~~ 154 (176)
.+++ ..+||.||..++.....+ .. | - ..+...-|.....+ .+.-+++||+|.|.+-+.+
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l-~~---------~---l-~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGL-KE---------W---L-GVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTT-TT---------T---T-TTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCH-HH---------H---h-hccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 3455 678999999998753211 00 0 0 11333333333222 2567999999999987753
No 124
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=81.66 E-value=8.5 Score=28.94 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=45.6
Q ss_pred CceEEEEEecC--Ccee--EecCcccHHHHHHHHHHHhhh---hhhc-ccCCccccccceeeeeeeecCC-cccccC---
Q 030498 64 SAMRISILKLD--GTSF--AVMNSATVKDLKLAIKKKVND---MEQS-NLGHRHISWKHVWANYCLSHQN-QKLLDE--- 131 (176)
Q Consensus 64 ~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~~~~~---~~~R-q~G~~~ISW~~VW~~f~L~~~~-~kL~dD--- 131 (176)
+.|+|.|...+ +..+ -|..--||.+.|..|-..+-. |.+| +...-..-|+.==..-.|.-.+ .....+
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 35677776543 3445 455668999999988877531 3332 1112233443210000111110 000111
Q ss_pred -cchhhhcCCccCCEEEEEeee
Q 030498 132 -NSALQDCGVRNNSQVQFVPFV 152 (176)
Q Consensus 132 -~~~L~dyGIkngd~L~Fk~~l 152 (176)
-.+|..|+|.||++|.++++.
T Consensus 90 rLNTL~HY~V~dgatl~l~~~~ 111 (111)
T 4e71_A 90 RVNTLMHYNVRDGATLILSKVG 111 (111)
T ss_dssp CCCBHHHHTCCTTCEEEEEEC-
T ss_pred EecchhhcCCCCCCEEEEEeCC
Confidence 148899999999999998863
No 125
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=81.44 E-value=3.3 Score=29.46 Aligned_cols=65 Identities=11% Similarity=0.233 Sum_probs=40.0
Q ss_pred ceEEEEEecCCceeEecCc-ccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 65 AMRISILKLDGTSFAVMNS-ATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 65 Am~LtV~k~dG~~l~V~~~-ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
.|+|+| ||+.++++.. +||.||-..+. +.++ .+....+++ ++. .....++-+++|
T Consensus 20 ~M~I~v---NGe~~el~~~~~Tv~dLL~~L~----~~~~---------------~vaVavNg~-iV~-~~~~~~~~L~dG 75 (87)
T 1tyg_B 20 RHMLQL---NGKDVKWKKDTGTIQDLLASYQ----LENK---------------IVIVERNKE-IIG-KERYHEVELCDR 75 (87)
T ss_dssp --CEEE---TTEEECCSSSCCBHHHHHHHTT----CTTS---------------CCEEEETTE-EEC-GGGTTTSBCCSS
T ss_pred ceEEEE---CCEEEECCCCCCcHHHHHHHhC----CCCC---------------CEEEEECCE-ECC-hhhcCCcCCCCC
Confidence 466655 6888888887 99999988762 1111 112233333 332 234446679999
Q ss_pred CEEEEEeeee
Q 030498 144 SQVQFVPFVL 153 (176)
Q Consensus 144 d~L~Fk~~l~ 153 (176)
|+|-|.+-+.
T Consensus 76 D~Vei~~~V~ 85 (87)
T 1tyg_B 76 DVIEIVHFVG 85 (87)
T ss_dssp SEEEEEEECC
T ss_pred CEEEEEcccc
Confidence 9999988664
No 126
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=80.42 E-value=3.5 Score=27.50 Aligned_cols=64 Identities=9% Similarity=0.233 Sum_probs=40.4
Q ss_pred ceEEEEEecCCce-eEecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 65 AMRISILKLDGTS-FAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 65 Am~LtV~k~dG~~-l~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
.|+|+|.-..+.. +.++..+||.||...+. ..+. ......+++ +...+. -+++|
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l~----~~~~---------------~v~vavN~~-~v~~~~-----~L~~g 58 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGELE----IPIE---------------TVVVKKNGQ-IVIDEE-----EIFDG 58 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHTT----CCTT---------------TEEEEETTE-ECCTTS-----BCCTT
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHhC----CCCC---------------CEEEEECCE-ECCCcc-----cCCCC
Confidence 4899987665444 48888899999988762 1111 112333343 333222 68999
Q ss_pred CEEEEEeeee
Q 030498 144 SQVQFVPFVL 153 (176)
Q Consensus 144 d~L~Fk~~l~ 153 (176)
|+|-|.+-+.
T Consensus 59 D~V~ii~~V~ 68 (70)
T 1ryj_A 59 DIIEVIRVIY 68 (70)
T ss_dssp CEEEEEECTT
T ss_pred CEEEEEeccc
Confidence 9999988654
No 127
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.51 E-value=4.9 Score=27.23 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=41.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+....|.+- ....=.+..+..+||...
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l 75 (103)
T 2d9p_A 20 VKNLDDGIDDERLRKAFS-PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEM 75 (103)
T ss_dssp EECCCTTCCHHHHHHTTT-TTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHh
Confidence 478999999999998887 799988888887655543 222335788888888754
No 128
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=79.40 E-value=8.3 Score=31.40 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=51.4
Q ss_pred ceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC---C-cccccCcchhhhc
Q 030498 65 AMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ---N-QKLLDENSALQDC 138 (176)
Q Consensus 65 Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~---~-~kL~dD~~~L~dy 138 (176)
+|.+.|.-.||+ + .|..++|+.||=.+|.+...+.+. .-|.|.+. + ...++.++.|.+.
T Consensus 1 ~i~~~V~l~d~~-~~~~v~~~tt~~el~~~v~~~l~L~e~--------------~~FgL~~~~~~~~~~wLd~~~~l~~q 65 (294)
T 1ef1_A 1 TISVRVTTMDAE-LEFAIQPNTTGKQLFDQVVKTIGLREV--------------WFFGLQYQDTKGFSTWLKLNKKVTAQ 65 (294)
T ss_dssp CEEEEEEETTEE-EEEEECTTCBHHHHHHHHHHHHTCCCG--------------GGEEEEEEBTTSCEEECCSSSBGGGS
T ss_pred CEEEEEEECCce-EEEEECCCCcHHHHHHHHHHHcCCCCc--------------ceeEEEEECCCCceeecccccCHHhh
Confidence 478899999994 6 889999999999999998865321 12444442 2 2345667788888
Q ss_pred CCccCCEEEEEeeeec
Q 030498 139 GVRNNSQVQFVPFVLS 154 (176)
Q Consensus 139 GIkngd~L~Fk~~l~~ 154 (176)
+++.+....|.-|++-
T Consensus 66 ~~~~~~~~~l~fr~kf 81 (294)
T 1ef1_A 66 DVRKESPLLFKFRAKF 81 (294)
T ss_dssp CBCCCSSEEEEEEESS
T ss_pred ccCCCCCEEEEEEEEE
Confidence 7777666554444443
No 129
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=79.27 E-value=6.7 Score=25.41 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=40.9
Q ss_pred eEEEEEecCCceeEecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCE
Q 030498 66 MRISILKLDGTSFAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQ 145 (176)
Q Consensus 66 m~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~ 145 (176)
|.+.|.-.||+.+.++..+|+.||-+.|........ | ....+++ +.+- ++-+.+|+.
T Consensus 1 m~i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~--------v---------aa~vNg~-lvdl-----~~~L~~~~~ 57 (73)
T 2kmm_A 1 MEVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHC--------I---------GAKVNHK-LVPL-----SYVLNSGDQ 57 (73)
T ss_dssp CCEEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTE--------E---------EEEETTE-ECCT-----TCBCCSSSB
T ss_pred CeEEEEcCCCCEEEcCCCCcHHHHHHHHhhccccce--------E---------EEEECCE-EeCC-----CcCcCCCCE
Confidence 556666668888888999999999887744331100 0 1112333 4433 366778999
Q ss_pred EEEEeeee
Q 030498 146 VQFVPFVL 153 (176)
Q Consensus 146 L~Fk~~l~ 153 (176)
|.|+.-..
T Consensus 58 Veivt~~~ 65 (73)
T 2kmm_A 58 VEVLSSKS 65 (73)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 99887543
No 130
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=77.75 E-value=2.7 Score=27.52 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=37.2
Q ss_pred cCCceeEecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeee
Q 030498 73 LDGTSFAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFV 152 (176)
Q Consensus 73 ~dG~~l~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l 152 (176)
.||+.+.++..+||.||-..+. . +. . . +...-+..... .....+.-+++||+|-|.+-+
T Consensus 5 vNg~~~~~~~~~tv~~ll~~l~----~-~~--~------------~-v~vavN~~~v~-~~~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 5 FNDQAMQCAAGQTVHELLEQLD----Q-RQ--A------------G-AALAINQQIVP-REQWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp ESSCEECCCTTCCHHHHHHHHT----C-CC--S------------S-EEEEETTEEEC-HHHHTTCCCCTTEEECEEESC
T ss_pred ECCEEEEcCCCCcHHHHHHHcC----C-CC--C------------C-EEEEECCEECC-chhcCCcCCCCCCEEEEEeec
Confidence 3688887788899999988763 1 10 1 1 22222332332 223335679999999998866
Q ss_pred e
Q 030498 153 L 153 (176)
Q Consensus 153 ~ 153 (176)
.
T Consensus 64 ~ 64 (66)
T 1f0z_A 64 A 64 (66)
T ss_dssp C
T ss_pred c
Confidence 4
No 131
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.52 E-value=5.2 Score=29.35 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=51.8
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC--CcccccCcchhhhcC
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ--NQKLLDENSALQDCG 139 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~--~~kL~dD~~~L~dyG 139 (176)
+..+|-|.-.-.+.. .|.+.+++.+|=-+|-.+-...|+ +|.|..+ ....+|-+++|.|||
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~---------------~~~Ll~d~~~~e~LdLskSLndlg 73 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPL---------------HTLLLKDYQSQEPLDLTKSLNDLG 73 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTT---------------SEEEESCSSCCCBCCTTSCHHHHT
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChh---------------hEEEecCCCCCcccchhcchhhhh
Confidence 457787877766666 788999999999999999876665 3344444 334578889999999
Q ss_pred CccCCEEEEEee
Q 030498 140 VRNNSQVQFVPF 151 (176)
Q Consensus 140 Ikngd~L~Fk~~ 151 (176)
|+. |+-...
T Consensus 74 irE---Lya~d~ 82 (91)
T 2daj_A 74 LRE---LYAMDV 82 (91)
T ss_dssp CSE---EEEEEC
T ss_pred hhh---hheecc
Confidence 985 655543
No 132
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.43 E-value=7.7 Score=35.83 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=55.3
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC----CcccccCcchhh
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ----NQKLLDENSALQ 136 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~----~~kL~dD~~~L~ 136 (176)
|..|.+.|...|| .+ .|..++|+.||=..|.....+... .-|.|.+. ....++.++.|.
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~--------------~~FGL~~~d~~~~~~WLd~~k~i~ 66 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREV--------------WFFGLQYTDSKGDLTWIKLYKKVM 66 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCG--------------GGEEEEEEBTTSCEEECCTTSBGG
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCc--------------cceeEEEEecCcchhHhhccccHH
Confidence 6789999999999 45 888999999999999998865221 12344432 123466678888
Q ss_pred hcCCccCCEEEEEeeeecC
Q 030498 137 DCGVRNNSQVQFVPFVLSK 155 (176)
Q Consensus 137 dyGIkngd~L~Fk~~l~~~ 155 (176)
+.+++.+..+.|.-|++..
T Consensus 67 ~q~~~~~~~~~L~FRvkfy 85 (575)
T 2i1j_A 67 QQDVKKENPLQFKFRAKFY 85 (575)
T ss_dssp GSCBCCCSSEEEEEEESSC
T ss_pred HhcccCCCCeEEEEEEEEc
Confidence 8888887776666666544
No 133
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=76.41 E-value=6.6 Score=32.69 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=49.5
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC----CcccccCcchh
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ----NQKLLDENSAL 135 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~----~~kL~dD~~~L 135 (176)
..+.|.+.|.-+||+.. .|...+|+.||=..|.....+... . -|-|.+. ....++.++.|
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~-~-------------~FgL~~~~~~~~~~wLd~~k~i 79 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEE-D-------------YFGLAIWDNATSKTWLDSAKEI 79 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSG-G-------------GEEEEEEEETTEEEECCTTSBH
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCc-c-------------eeEEEEEcCCCccchhccchhH
Confidence 34669999999999998 788999999999999999875321 1 1222222 12345666777
Q ss_pred hhcCCccCCEEEEEeee
Q 030498 136 QDCGVRNNSQVQFVPFV 152 (176)
Q Consensus 136 ~dyGIkngd~L~Fk~~l 152 (176)
.+.+....-.++|..+.
T Consensus 80 ~~q~~~~~~~l~frvkf 96 (296)
T 3qij_A 80 KKQVRGVPWNFTFNVKF 96 (296)
T ss_dssp HHHC---CCEEEEEESS
T ss_pred HHhcCCCCcEEEEEEEE
Confidence 77754444457776544
No 134
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=75.49 E-value=18 Score=32.50 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=42.5
Q ss_pred CCCCHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhh
Q 030498 47 KKPTLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDM 100 (176)
Q Consensus 47 ~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~ 100 (176)
..|+..||.. +..++.|.+.|.-.||+.. .|...+|+.||=..|.++..+.
T Consensus 201 ~~Ps~~Ei~a---~~~~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~ 253 (555)
T 3au4_A 201 FVPSRDEIEA---LIHRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAME 253 (555)
T ss_dssp SCCCHHHHHH---HHTTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCT
T ss_pred CCCCHHHHHH---HHhCCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCC
Confidence 3457788775 4557789999999999987 8889999999999999988653
No 135
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=75.36 E-value=10 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=41.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+..|.+- ....=.+..+..+||...-
T Consensus 13 V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 13 VRNLPFDFTWKMLKDKFN-ECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp ECSCCTTCCHHHHHHHHH-TTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 478999999999998776 589888888888666543 2223357888889988643
No 136
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=74.85 E-value=5.6 Score=28.16 Aligned_cols=79 Identities=9% Similarity=0.136 Sum_probs=41.0
Q ss_pred ceEEEEEecCC-------ceeEecCcccHHHHHHHHHHHhhhhhhc--ccCCccccccceeeee-------eeecCCccc
Q 030498 65 AMRISILKLDG-------TSFAVMNSATVKDLKLAIKKKVNDMEQS--NLGHRHISWKHVWANY-------CLSHQNQKL 128 (176)
Q Consensus 65 Am~LtV~k~dG-------~~l~V~~~ATV~DLKkAI~~~~~~~~~R--q~G~~~ISW~~VW~~f-------~L~~~~~kL 128 (176)
-|+|+|+--.. +.+.++ .+||.||..++...+...... ..| .+...+ ....+++ .
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g-------~l~~~v~~~~~~~~v~VNg~-~ 73 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYVIFEKG-------DEKSEILILCGSINILINGN-N 73 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSC-------CTTSSCCCBCSSCEEEETTS-C
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHHHhccc-------ccccceeccccccEEEECCE-E
Confidence 36666654322 222555 799999999988776422110 011 011111 2222222 1
Q ss_pred ccCcchhhhcCCccCCEEEEEeeee
Q 030498 129 LDENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 129 ~dD~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
.... .-.++-+++||+|.|.+-+.
T Consensus 74 v~~~-~~~~~~L~~gD~V~i~ppv~ 97 (99)
T 2l52_A 74 IRHL-EGLETLLKDSDEIGILPPVS 97 (99)
T ss_dssp GGGT-TSTTSCCCTTEEEEEECCCS
T ss_pred cccc-CCCCCCCCCCCEEEEECCCC
Confidence 1100 01256799999999998764
No 137
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=74.56 E-value=15 Score=31.08 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=59.5
Q ss_pred CHHHH--hHhhhhccCC-ceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecC
Q 030498 50 TLSDV--DTLISLEMGS-AMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQ 124 (176)
Q Consensus 50 Tl~ev--~~~Iale~G~-Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~ 124 (176)
|++.. .+-.+++++. .+.+.|.-.||+.. .|..++|+.||=..|.+...+... .-|.|.+.
T Consensus 67 ~l~~y~~~~~~~l~~~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~--------------~~FgL~~~ 132 (371)
T 3ivf_A 67 ALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH--------------DEYSLVRE 132 (371)
T ss_dssp BGGGGTCCTTCEEEEEECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCG--------------GGEEEECC
T ss_pred CHHHhCCCCCceeeccCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCc--------------cccEEEEE
Confidence 66543 3344666653 48899999999998 788999999999999998865321 12444443
Q ss_pred C--------cccccCcchhhhcCCccCCEEEEEeee
Q 030498 125 N--------QKLLDENSALQDCGVRNNSQVQFVPFV 152 (176)
Q Consensus 125 ~--------~kL~dD~~~L~dyGIkngd~L~Fk~~l 152 (176)
. ..-++-.+.|.+.|+.....++|..+.
T Consensus 133 ~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvKf 168 (371)
T 3ivf_A 133 LMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRKF 168 (371)
T ss_dssp C----------CCCTTSBTGGGTCCTTCEEEEEECC
T ss_pred ecccccchHHHHHhcCchhHhhCCCCCceEEEEEEE
Confidence 2 123455667777777666678885543
No 138
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=73.28 E-value=12 Score=24.12 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=40.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|..+.+ .+|.-..+.+... .|.+- ....=.+..+..+||+..-
T Consensus 11 v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 478999999999999887 7898888888764 44433 2223367888888887543
No 139
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=73.21 E-value=17 Score=28.26 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=47.7
Q ss_pred CceEEEEEecCCc------ee--EecCcccHHHHHHHHHHHhhh---hhhccc-CCcccccccee-eeeeeecCCc--cc
Q 030498 64 SAMRISILKLDGT------SF--AVMNSATVKDLKLAIKKKVND---MEQSNL-GHRHISWKHVW-ANYCLSHQNQ--KL 128 (176)
Q Consensus 64 ~Am~LtV~k~dG~------~l--~V~~~ATV~DLKkAI~~~~~~---~~~Rq~-G~~~ISW~~VW-~~f~L~~~~~--kL 128 (176)
.+|+|.|.-.+|. .+ -|..--||.+.|..|-..+-. |.+|.. ..--+-||.== ....|.-..- +.
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 5678888765433 33 455668999999988877522 333311 11223343211 1111211100 00
Q ss_pred cc---CcchhhhcCCccCCEEEEEeeeec
Q 030498 129 LD---ENSALQDCGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 129 ~d---D~~~L~dyGIkngd~L~Fk~~l~~ 154 (176)
-+ --.+|..|+|.||+.|.++++...
T Consensus 103 ~~~wkrLNTL~HY~V~Dga~l~l~~~~~~ 131 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDGATVALVPCLTK 131 (138)
T ss_dssp ETTEEECCBHHHHTCCTTCEEEEEEC---
T ss_pred cCCceeecchhccCCCCCCEEEEEECCCc
Confidence 00 013899999999999999988754
No 140
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=71.40 E-value=7 Score=26.38 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=35.1
Q ss_pred EecCcccHHHHHHHHHHHhhhhhhc----ccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeeee
Q 030498 79 AVMNSATVKDLKLAIKKKVNDMEQS----NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 79 ~V~~~ATV~DLKkAI~~~~~~~~~R----q~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
.++..+||.||..++...+...... ..|. ...+....+++ ..... .-.++-+++||+|.|.+-+.
T Consensus 20 ~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~--------~~~v~v~vN~~-~v~~~-~~~~~~l~~gD~V~i~ppv~ 88 (90)
T 2g1e_A 20 TFNGISKISELLERLKVEYGSEFTKQMYDGNNL--------FKNVIILVNGN-NITSM-KGLDTEIKDDDKIDLFPPVA 88 (90)
T ss_dssp EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCS--------TTTCEEEESSS-BGGGT-CSSSCBCCTTCEEEEECCTT
T ss_pred EcCCCCcHHHHHHHHHHHCcchhhhccccccCc--------CcceEEEECCE-Ecccc-CCCCcCCCCCCEEEEeCCCC
Confidence 5666689999999998776322111 1110 01112222222 22211 11255699999999988664
No 141
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=70.69 E-value=5.5 Score=29.39 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=28.1
Q ss_pred CCceEEEEEecCCceeEecCcccHHHHHHHHHHHhhhhh
Q 030498 63 GSAMRISILKLDGTSFAVMNSATVKDLKLAIKKKVNDME 101 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~~~~~ 101 (176)
|++|++++.+.++....+..+.+-.+++.++.+.+..+.
T Consensus 1 ~~~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~ 39 (121)
T 1p9y_A 1 GSHMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVA 39 (121)
T ss_dssp ---CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHH
Confidence 789999999999987755556677788888888876543
No 142
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=70.32 E-value=14 Score=25.43 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=40.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+. .|.+- ....=.+..+..+||+..
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (115)
T 2dgo_A 20 VGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77 (115)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 478999999999999887 8899888888765 44433 222336788888888754
No 143
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.10 E-value=15 Score=24.71 Aligned_cols=55 Identities=11% Similarity=-0.010 Sum_probs=40.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+-.+|.-..+.|... .|.+- ....=++..+..+||...
T Consensus 14 V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 71 (104)
T 2dhg_A 14 VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTEC 71 (104)
T ss_dssp EECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHc
Confidence 47899999999999988876998888887764 44332 222346788888888743
No 144
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=69.82 E-value=6.1 Score=27.21 Aligned_cols=63 Identities=10% Similarity=0.163 Sum_probs=35.6
Q ss_pred CcccHHHHHHHHHHHhhhhhhc---c--cCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeeee
Q 030498 82 NSATVKDLKLAIKKKVNDMEQS---N--LGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 82 ~~ATV~DLKkAI~~~~~~~~~R---q--~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
..+||.||..++...+...... . .|. ++ .++..+-+........- -++-+++||+|.|.+-+.
T Consensus 24 ~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~-------~~-~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~ 91 (93)
T 3dwg_C 24 SGDTLGAVISDLEANYSGISERLMDPSSPGK-------LH-RFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVA 91 (93)
T ss_dssp CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTS-------BC-TTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCT
T ss_pred CCCCHHHHHHHHHHHChhHHHHHhccccCCc-------cc-CCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCC
Confidence 5689999999998876422110 0 111 11 12333333333322111 256799999999998764
No 145
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=68.46 E-value=38 Score=25.99 Aligned_cols=90 Identities=11% Similarity=0.159 Sum_probs=47.3
Q ss_pred ceEEEEEe--cCCcee--EecCcccHHHHHHHHHHHhhh---hhhcc-cCCccccccce-eeeeeeecCC-cccccC---
Q 030498 65 AMRISILK--LDGTSF--AVMNSATVKDLKLAIKKKVND---MEQSN-LGHRHISWKHV-WANYCLSHQN-QKLLDE--- 131 (176)
Q Consensus 65 Am~LtV~k--~dG~~l--~V~~~ATV~DLKkAI~~~~~~---~~~Rq-~G~~~ISW~~V-W~~f~L~~~~-~kL~dD--- 131 (176)
.++|.|.. .++..+ .|..--||.+.|..|-..+-. |.+|. ...-..-|+.= =..+.|.-.+ .....+
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 45666654 234445 455678999999988877531 33321 11122233220 0111222211 111111
Q ss_pred -cchhhhcCCccCCEEEEEeeeec
Q 030498 132 -NSALQDCGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 132 -~~~L~dyGIkngd~L~Fk~~l~~ 154 (176)
-.+|..|+|.||++|-+.++..+
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~~~ 107 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLIDKK 107 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC--
T ss_pred EeccccccCCCCCCEEEEEEcccc
Confidence 15899999999999999987643
No 146
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=67.23 E-value=16 Score=25.22 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=40.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.|... +|.+- ....=.+..+..+||...
T Consensus 30 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 30 IYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp EESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc
Confidence 479999999999999887 7898877777664 34433 223346888888998764
No 147
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=65.56 E-value=9 Score=25.36 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=33.1
Q ss_pred cCcccHHHHHHHHHHHhhhhhhc-ccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeeee
Q 030498 81 MNSATVKDLKLAIKKKVNDMEQS-NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 81 ~~~ATV~DLKkAI~~~~~~~~~R-q~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
+..+||.||..++...+...... ..+. +...-+....+ .+.-+++||+|.|.+-+.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~------------~~v~vN~~~v~-----~~~~l~~gD~V~i~Ppv~ 79 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGK------------LLAAVNQTLVS-----FDHPLTDGDEVAFFPPVT 79 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTT------------CEEEETTEECC-----TTCBCCTTCEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCC------------EEEEECCEECC-----CCCCCCCCCEEEEeCCCC
Confidence 35689999999987665422110 0110 12222222332 256799999999998764
No 148
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.20 E-value=19 Score=24.57 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=39.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.|... +|.+- ....=.+..+..+||...
T Consensus 20 V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 20 VANLDYKVGWKKLKEVFS-MAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 478999999999998887 7888777777653 44332 222335788888888754
No 149
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=65.01 E-value=20 Score=24.55 Aligned_cols=54 Identities=24% Similarity=0.379 Sum_probs=39.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
...||.++|-+||..+.+ .+|.-..+.|.+. .|.+- ....=.+..+-.+||+..
T Consensus 24 V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 24 VNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 479999999999998876 6898877777653 45543 222335788888998764
No 150
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=63.93 E-value=7.7 Score=25.52 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=33.9
Q ss_pred EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeeee
Q 030498 79 AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 79 ~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
.++..+||.||..++...+. . |..+ .|...-+....+. +.-+++||+|-|.+-+.
T Consensus 21 ~~~~~~tv~~ll~~l~~~~p---~---------~~~v---~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv~ 75 (77)
T 2q5w_D 21 VLEQALTVQQFEDLLFERYP---Q---------INNK---KFQVAVNEEFVQK-----SDFIQPNDTVALIPPVS 75 (77)
T ss_dssp CCSSCEEHHHHHHHHHHHCG---G---------GTTC---CCEEEETTEEECT-----TSEECTTCEEEEECSCC
T ss_pred ECCCCCCHHHHHHHHHHHCc---c---------hhcc---eEEEEECCEECCC-----CCCcCCCCEEEEECCCC
Confidence 55677999999998776542 1 1122 1222223333332 46799999999988664
No 151
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=63.92 E-value=15 Score=25.78 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=35.4
Q ss_pred Eec--CcccHHHHHHHHHHHhhh-hhhc----ccCCccccccceeeeeeeecCCcccccCcchh--hhcCCccCCEEEEE
Q 030498 79 AVM--NSATVKDLKLAIKKKVND-MEQS----NLGHRHISWKHVWANYCLSHQNQKLLDENSAL--QDCGVRNNSQVQFV 149 (176)
Q Consensus 79 ~V~--~~ATV~DLKkAI~~~~~~-~~~R----q~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L--~dyGIkngd~L~Fk 149 (176)
.++ ..+||.||...+...+.. .+.- ..|. .+.+++.+-+..-. ..+ -|+-+++||+|.|.
T Consensus 25 ~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~--------lr~~~~v~VN~~~~---~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 25 KMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDS--------IRPGIITLINDTDW---ELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTE--------ECTTEEEEETTEEG---GGGTGGGCBCCTTCEEEEE
T ss_pred ecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCc--------cccCeEEEECCEEc---cccCCCCcCcCCCCEEEEE
Confidence 445 679999999999877631 1110 1110 11123333333211 012 25679999999998
Q ss_pred eeee
Q 030498 150 PFVL 153 (176)
Q Consensus 150 ~~l~ 153 (176)
+=+.
T Consensus 94 Ppv~ 97 (99)
T 2qjl_A 94 STLH 97 (99)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 8654
No 152
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.80 E-value=22 Score=23.75 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=39.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-Ccee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-G~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-+||..+.+ .+|.-..+.+.... |.+- ....=.+..+..+||...-
T Consensus 22 v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 22 ISGLPFSCTKEELEEICK-AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 478999999999998886 68988788777654 3322 2223367888888887643
No 153
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.11 E-value=18 Score=24.34 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=39.8
Q ss_pred cccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 41 ~L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
++..||.++|-++|..+.+ .+|.-..+.+.+. .|.+- ....=++..+..+||...
T Consensus 19 ~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (103)
T 2cq0_A 19 RVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 77 (103)
T ss_dssp EEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc
Confidence 3578999999999998776 6888878877764 44443 222336788888888754
No 154
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=63.02 E-value=36 Score=25.64 Aligned_cols=89 Identities=16% Similarity=0.255 Sum_probs=47.9
Q ss_pred CceEEEEEecCC---cee--EecCcccHHHHHHHHHHHhhh---hhhcc-cCCccccccce-eeeeeeecCC-cccccC-
Q 030498 64 SAMRISILKLDG---TSF--AVMNSATVKDLKLAIKKKVND---MEQSN-LGHRHISWKHV-WANYCLSHQN-QKLLDE- 131 (176)
Q Consensus 64 ~Am~LtV~k~dG---~~l--~V~~~ATV~DLKkAI~~~~~~---~~~Rq-~G~~~ISW~~V-W~~f~L~~~~-~kL~dD- 131 (176)
..|+|.|...+| ..+ .|..--||.+.|.-|-..+-. |.+|. ...-..-|+.= =....|.-.+ .....+
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 456777765443 334 455668999999988777521 22321 11122334331 1122232221 101111
Q ss_pred ---cchhhhcCCccCCEEEEEeee
Q 030498 132 ---NSALQDCGVRNNSQVQFVPFV 152 (176)
Q Consensus 132 ---~~~L~dyGIkngd~L~Fk~~l 152 (176)
-.+|..|+|.||++|.+.++-
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 158999999999999998864
No 155
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=62.41 E-value=21 Score=24.91 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=41.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
...||.++|-++|..+.. .+|.-..+.|.+..+.+- -...=.+..+-.+||+..-
T Consensus 10 V~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 10 IKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC
Confidence 478999999999998776 689988888887666542 2223357888889987643
No 156
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=61.65 E-value=24 Score=23.63 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=39.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.|.+. +|.+- ....=++..+..+||...
T Consensus 20 v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 20 VGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHH
Confidence 478999999999998887 7898878877764 33322 222336788888888754
No 157
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=60.98 E-value=27 Score=23.50 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=39.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.+... +|.+- ....=.+..+..+||...
T Consensus 34 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 34 VSNLDFGVSDADIQELFA-EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 378999999999998887 7888777777644 44432 222335888888898854
No 158
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.28 E-value=18 Score=24.79 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=38.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
...||.++|-+||..+.. .+|.-..+.|... |--|+ .=++..+.++||+..
T Consensus 20 V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-g~afV--~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 20 VSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-GTGVV--EFVRKEDMTYAVRKL 70 (108)
T ss_dssp EESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-TEEEE--EESSHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-CEEEE--EECCHHHHHHHHHHH
Confidence 478999999999998876 7898888888765 55442 225678888888753
No 159
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.80 E-value=20 Score=23.94 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=34.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEe--cCCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILK--LDGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k--~dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.. .+ ..+.+.. ..|.+- ....=++..+..+||...
T Consensus 20 V~nLp~~~t~~~l~~~F~-~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2fc8_A 20 VKGLSEDTTEETLKESFD-GS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 74 (102)
T ss_dssp EECCCTTCCHHHHHHTST-TC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred EeCCCCccCHHHHHHHhc-CC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 478999999999998887 44 3444443 345433 222335788888888754
No 160
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.56 E-value=22 Score=23.53 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=38.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC---C--cee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD---G--TSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d---G--~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.... | .+- ....=.+..+..+||...
T Consensus 10 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l 70 (98)
T 2cpf_A 10 IKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 70 (98)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHh
Confidence 478999999999998886 78988788777543 2 222 222335788888888753
No 161
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=59.09 E-value=37 Score=25.18 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=48.9
Q ss_pred cCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhhhhhc-ccCCccccccceeeeeeeecCCcccccCcchhhhc
Q 030498 62 MGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVNDMEQS-NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC 138 (176)
Q Consensus 62 ~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~~~~R-q~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy 138 (176)
..+.+.|...--+|-.+ .|+.+||+.|+|..+-+....||=- ..+... .|+-.+.--..+-+.+.|+...|.|.
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~---~Y~F~~in~~~e~Eel~DEsrrL~dv 92 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDES---SYIFVSVTQEAEREEFFDETRRLCDL 92 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGG---GCEEEEEBTTSCEEEECCTTSBGGGS
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCcc---ceEEEEecCCceEEEeEcCceEEEec
Confidence 44668888888899777 8899999999999888876544310 001000 13332222223445578888888886
Q ss_pred CCc
Q 030498 139 GVR 141 (176)
Q Consensus 139 GIk 141 (176)
-.-
T Consensus 93 ~pf 95 (108)
T 2v1y_A 93 RLF 95 (108)
T ss_dssp CBS
T ss_pred ccc
Confidence 554
No 162
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.19 E-value=24 Score=23.62 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=38.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+....+.+ +....=.+..+..+||...
T Consensus 20 V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 20 VSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 75 (103)
T ss_dssp EESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 478999999999998876 68988888887664432 2222235678888888754
No 163
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=57.14 E-value=34 Score=22.48 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=38.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccC--CceEEEEEe--cCCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMG--SAMRISILK--LDGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G--~Am~LtV~k--~dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
...||.++|-++|..+.. .+| .-..+.+.. ..|.+- ....=++..+..+||+..-
T Consensus 6 V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 6 IGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp EESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG
T ss_pred EeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC
Confidence 468999999999998774 678 666666655 466654 3333467888889997653
No 164
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.73 E-value=22 Score=22.92 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=38.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.+... .|.+ +....=.+..+..+||+..
T Consensus 10 v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (85)
T 1x4e_A 10 IRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 67 (85)
T ss_dssp EESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 478999999999998876 7898878877664 2332 2222225677888888754
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.59 E-value=22 Score=23.53 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=36.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIK 94 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~ 94 (176)
+..||.++|-++|..+.. .+|.-..|.+.+..|. +....=++..+..+||.
T Consensus 13 V~nl~~~~t~~~l~~~F~-~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 13 VSGFPRGVDSAQLSEYFL-AFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS 63 (94)
T ss_dssp EECCCTTCCHHHHHHHGG-GTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHH-hcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh
Confidence 478999999999998887 7888777755555555 61112245778888887
No 166
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=55.22 E-value=19 Score=26.48 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=44.5
Q ss_pred CceEEEEEecCC-------c-ee--Eec---CcccHHHHHHHHHHHhh-hhhhc--ccCCccccccceeeeeeeecCCcc
Q 030498 64 SAMRISILKLDG-------T-SF--AVM---NSATVKDLKLAIKKKVN-DMEQS--NLGHRHISWKHVWANYCLSHQNQK 127 (176)
Q Consensus 64 ~Am~LtV~k~dG-------~-~l--~V~---~~ATV~DLKkAI~~~~~-~~~~R--q~G~~~ISW~~VW~~f~L~~~~~k 127 (176)
..|+|+|.-..+ + .+ +++ ..+||.||-..+.+.+. ..+.- +.|. + +.|++.
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~-------l-r~~i~V----- 76 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS-------V-RPGILV----- 76 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSS-------C-CSSEEE-----
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCc-------c-cCCeEE-----
Confidence 348888876543 2 32 455 23799999999988773 21110 1121 0 111222
Q ss_pred cccCcc--hh--hhcCCccCCEEEEEeeeec
Q 030498 128 LLDENS--AL--QDCGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 128 L~dD~~--~L--~dyGIkngd~L~Fk~~l~~ 154 (176)
+++|.. .| -+|-+++||+|.|++-+.+
T Consensus 77 lVN~~di~~l~gldt~L~dGDeV~iip~vaG 107 (114)
T 1wgk_A 77 LINDADWELLGELDYQLQDQDSILFISTLHG 107 (114)
T ss_dssp EESSSBHHHHCTTTCBCCSSEEEEEEECSCC
T ss_pred EECCeeeeccCCcCcCCCCCCEEEEeCCCCC
Confidence 233322 22 2678999999999998765
No 167
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.04 E-value=31 Score=22.59 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=38.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+.. |.+- ....=.+..+..+||...
T Consensus 10 v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (95)
T 2dnz_A 10 VGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67 (95)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 478999999999998885 68988888887653 3322 222235788888888754
No 168
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.46 E-value=33 Score=22.82 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=38.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+... .|.+- ....=.|..+..+||+..
T Consensus 13 V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 70 (104)
T 1p1t_A 13 VGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70 (104)
T ss_dssp EESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS
T ss_pred EeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 478999999999998887 6887767766654 45443 223336788888888754
No 169
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=54.03 E-value=39 Score=21.38 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=38.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
...||.++|-++|....+ .+|.-..+.+... .|.+- ....=.+..+..+|+...
T Consensus 6 V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp EECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 468999999999998875 6888877877755 34332 222235778888888754
No 170
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=53.82 E-value=45 Score=23.75 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=40.3
Q ss_pred cCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHHh
Q 030498 43 ADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 43 ~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~ 97 (176)
..||.++|-+||..+.+ .+|.-..+.+.+.-|.-|+- =+++.+-+.||...-
T Consensus 27 ~NLp~~~te~~L~~lF~-~fG~V~~v~i~~~kg~AFVe--f~~~~~A~~Av~~ln 78 (100)
T 3r27_A 27 RGLIDGVVEADLVEALQ-EFGPISYVVVMPKKRQALVE--FEDVLGACNAVNYAA 78 (100)
T ss_dssp ESCCTTCCHHHHHHHHG-GGSCEEEEEEETTTTEEEEE--ESSHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHh-ccCCEEEEEEEcCCCEEEEE--ECCHHHHHHHHHHhc
Confidence 79999999999976664 79999889888766766522 247788888888654
No 171
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=53.40 E-value=33 Score=26.84 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=42.8
Q ss_pred CcccHHHHHHHHHHHhhhhhhcccCC----ccccc-----cceeeeeeeecCCcccccCcchhhhcCCccCCEEE
Q 030498 82 NSATVKDLKLAIKKKVNDMEQSNLGH----RHISW-----KHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQ 147 (176)
Q Consensus 82 ~~ATV~DLKkAI~~~~~~~~~Rq~G~----~~ISW-----~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~ 147 (176)
.+||+.||=.-|+...... |..|. +.|++ +|+-+..-....+.+-.||+++|.+.+..-||-|-
T Consensus 62 ~daTLrEL~~Lvk~~~p~a--r~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEA--RKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGG--GSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred CCCCHHHHHHHHHHhCccc--cCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 6799999998888876532 22332 11111 24444555555566777899999999999999654
No 172
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=53.22 E-value=26 Score=32.89 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=42.6
Q ss_pred CCCHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhh
Q 030498 48 KPTLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVND 99 (176)
Q Consensus 48 ~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~ 99 (176)
-||..||.+.. .++.|.+.|.-.||+.. .|...+|+.||=..|..+..+
T Consensus 249 ~Ps~~Ei~Ai~---~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL 299 (655)
T 3pvl_A 249 PPSWLELQATK---SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISL 299 (655)
T ss_dssp CCCHHHHHHHH---HTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHH---cCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC
Confidence 47888888765 57789999999999988 888999999999999999865
No 173
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=53.12 E-value=22 Score=24.79 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=38.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.|... .|.+- ....=++..+..+||+..
T Consensus 27 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 84 (126)
T 3ex7_B 27 VTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 84 (126)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 478999999999998876 7888777777654 34332 222335778888888754
No 174
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.52 E-value=46 Score=21.94 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=38.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCce-EEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAM-RISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am-~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+.+||.++|-++|..+.. .+|.-. .+.|.+. .|.+- ....=++..+..+||+..
T Consensus 14 V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 72 (99)
T 2div_A 14 MGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 72 (99)
T ss_dssp ECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence 478999999999988775 588766 6666654 44443 233346788888888743
No 175
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=52.18 E-value=46 Score=22.08 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=38.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceE--------EEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMR--------ISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~--------LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
.+.||.++|-+||..+.+ .+|.-.. +.+... .|.+- ....=++..+..+||+..
T Consensus 18 V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 18 VQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp EECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 478999999999998887 7887766 666653 34433 222335778888888754
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=51.71 E-value=44 Score=23.40 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=39.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+.+||+++|-++|..+.+ .+|.-..+.+.+. +|.+- ....=++..+-.+|+...
T Consensus 7 v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 7 VNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHc
Confidence 478999999999998887 6898777777765 44433 222335788888888754
No 177
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.59 E-value=23 Score=23.74 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=39.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec---CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL---DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~---dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+. +|.+- ....=.|..+..+||...
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 20 VRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 478999999999998876 5888878888765 44432 222336788888898865
No 178
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.19 E-value=26 Score=23.20 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=37.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.... |.+ +....=.+..+..+||...
T Consensus 13 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 70 (99)
T 1whw_A 13 VRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70 (99)
T ss_dssp EECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHh
Confidence 478999999999998886 68887777776543 322 1222225677888888654
No 179
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.03 E-value=50 Score=21.78 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=38.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+..|-.|+ .=++..+..+||+..-
T Consensus 22 V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~~g~afV--~f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 22 VGGLGPNTSLAALAREFD-RFGSIRTIDHVKGDSFAYI--QYESLDAAQAACAKMR 74 (97)
T ss_dssp EECCCSSCCHHHHHHHHH-TTSCEEEEEECSSSCCEEE--EESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCCCCEEEE--EECCHHHHHHHHHHHC
Confidence 478999999999988775 7898888888765454332 2246778888887543
No 180
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=50.32 E-value=26 Score=22.56 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=35.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCce--eEecCcccHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FAVMNSATVKDLKLAI 93 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~--l~V~~~ATV~DLKkAI 93 (176)
+..||.++|-++|....+ .+|.-..+.+... .|.+ +....=.+..+..+|+
T Consensus 11 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 11 VGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp EESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 478999999999998887 7898888887765 3433 2111224556777887
No 181
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=49.94 E-value=34 Score=26.30 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=34.5
Q ss_pred cccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEe
Q 030498 83 SATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVP 150 (176)
Q Consensus 83 ~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~ 150 (176)
.||..||=..++.++.+ .. . ||=.. -+.--|.|+.--=.+-.++|.+.||++|+.|++..
T Consensus 19 ~~TL~dLV~~l~~~~gy-~~-e-----iSV~~-~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSY-PQ-D-----ISLLD-ASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTC-CS-S-----EEEEE-TTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCC-CC-c-----EEEEe-cCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 48999998888766532 21 0 11000 00012333332112345899999999999998875
No 182
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=49.67 E-value=47 Score=24.05 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=39.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.+ .+|.-..|.|.... |.+- ....=.+..+..+||...
T Consensus 44 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 101 (156)
T 1h2v_Z 44 VGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 (156)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 379999999999998875 78888788886653 4332 222335788888898854
No 183
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=49.51 E-value=34 Score=25.09 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=38.0
Q ss_pred CCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHH
Q 030498 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKK 95 (176)
Q Consensus 45 lp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~ 95 (176)
.|..+..+||..-..-++||+|.+.-. ...+.| +=.|=.||-+||+-
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~---nnEL~i-PL~~Q~DLDkAvel 66 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYM---NNELSI-LLKNQDDLDKAIDI 66 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEE---CSSCEE-ECCSHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe---cceeEE-eccCHHHHHHHHHH
Confidence 577899999999999999999999887 333333 33578999999986
No 184
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.90 E-value=29 Score=23.08 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=38.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+. .|.+ +....=.+..+..+||+..
T Consensus 17 v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 74 (102)
T ss_dssp EESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 478999999999988876 6788778877664 2322 2222335778888888754
No 185
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.72 E-value=25 Score=24.19 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=37.4
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~ 95 (176)
+..||.++|-++|..+.. .+|.-..+.|.+.. |.+ +....=.+..+..+||..
T Consensus 22 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 22 VGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp EECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 478999999999998887 78988788776642 332 222222577788888764
No 186
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.70 E-value=41 Score=23.27 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=39.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~ 97 (176)
...||.++|-+||..+.+ .+|.-..+.+.+..|--|+ .=.+..+-++||...-
T Consensus 15 V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~g~afV--~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 15 AKNLPAGTLAAEIQETFS-RFGSLGRVLLPEGGITAIV--EFLEPLEARKAFRHLA 67 (111)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEECCSSSSCEEE--EESCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCCCCEEEE--EeCCHHHHHHHHHHhC
Confidence 478999999999999887 6998888888765554442 1246778888887653
No 187
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=48.21 E-value=32 Score=22.74 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=38.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.... |.+- ....=.+..+..+||+..
T Consensus 7 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 7 LGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 478999999999998887 68987777776542 3322 222235778888888754
No 188
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=47.73 E-value=41 Score=21.57 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=36.3
Q ss_pred ecCCceeEecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEee
Q 030498 72 KLDGTSFAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 151 (176)
Q Consensus 72 k~dG~~l~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~ 151 (176)
..||+.+.+ ..+||.||-..+.- .+. . +...-+..+.. ...-.+.-+++||+|-|.+-
T Consensus 3 ~vNg~~~~~-~~~tv~~ll~~l~~----~~~---------------~-v~vavN~~~v~-~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 3 WLNGEPRPL-EGKTLKEVLEEMGV----ELK---------------G-VAVLLNEEAFL-GLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EETTEEECC-TTCCHHHHHHHHTB----CGG---------------G-EEEEETTEEEE-GGGCCCCCCCTTCEEEEEEC
T ss_pred EECCEEEEc-CCCcHHHHHHHcCC----CCC---------------c-EEEEECCEECC-ccccCCcCCCCCCEEEEEee
Confidence 347888866 77999999887731 111 0 22222322332 12233467999999999987
Q ss_pred ee
Q 030498 152 VL 153 (176)
Q Consensus 152 l~ 153 (176)
+.
T Consensus 61 V~ 62 (64)
T 2cu3_A 61 MQ 62 (64)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 189
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=47.36 E-value=21 Score=26.69 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 45 lp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+|.-++.+||..-..-.+|++|.|.-. |..- .| +=.+=.||-+||+-.
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~El-lI-pl~sQeDLDkaIell 71 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYT--NNEL-VI-PLTTQDDLDKAVELL 71 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEEC--SSSS-CE-ECCSHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEe--cceE-EE-eccCHHHHHHHHHHH
Confidence 567899999999999999999999887 3332 22 235778999999973
No 190
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=46.86 E-value=44 Score=23.35 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=38.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-Cce--eEecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTS--FAVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-G~~--l~V~~~ATV~DLKkAI~~ 95 (176)
+.+||.++|-++|..+.+ .+|.-..+.+.... |.+ +....=.+..+..+||+.
T Consensus 12 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 12 IGGLNRETNEKMLKAVFG-KHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp EECCTTTCCHHHHHHHHH-TSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 479999999999988876 68888888887654 322 222233578888888874
No 191
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.54 E-value=39 Score=22.84 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=37.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.+- +|.-..+.|.. ++.+ +....=.+..+..+||+..
T Consensus 27 V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~-~~~~~g~afV~f~~~~~A~~A~~~l 81 (109)
T 1x4a_A 27 VGNLPPDIRTKDIEDVFYK-YGAIRDIDLKN-RRGGPPFAFVEFEDPRDAEDAVYGR 81 (109)
T ss_dssp EESCCTTCCHHHHHHHHGG-GSCEEEEEECC-SSSSSCCEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE-CCCCCcEEEEEECCHHHHHHHHHHc
Confidence 4789999999999988764 88877777754 3331 2222335788888888754
No 192
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=46.27 E-value=22 Score=24.84 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=38.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-+||..+.. .+|.-..+.|... |--|+ .=++..+..+||+..-
T Consensus 21 V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-g~afV--~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 21 VSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-GTGVV--EFVRKEDMTYAVRKLD 72 (115)
T ss_dssp EEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-SEEEE--EESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-CEEEE--EECCHHHHHHHHHHhC
Confidence 478999999999998776 7888777877654 54442 2256888899997653
No 193
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=46.18 E-value=39 Score=22.44 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=37.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+... .|-.|+ .=.+..+..+||...
T Consensus 5 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~afV--~f~~~~~a~~A~~~l 57 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFS-YYGPLRTVWIARNPPGFAFV--EFEDPRDAEDAVRGL 57 (101)
T ss_dssp EECCCSSCSHHHHHHHHH-HHCCCSEEEEESSSSSEEEE--ECSSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCEEEE--EECCHHHHHHHHHHH
Confidence 468999999999998876 6788888888765 333222 225677888888754
No 194
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=46.14 E-value=41 Score=22.91 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=38.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCce--eEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS--FAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~--l~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+. +.+ +....=++..+..+||...-
T Consensus 13 V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 13 IRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLS 68 (115)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcC
Confidence 478999999999998876 7898888888753 332 22222357788888888653
No 195
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.03 E-value=36 Score=22.74 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=37.4
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
+..||.++|-++|..+.+ .+|.-..+.+... .|.+- ....=++..+..+||..
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 20 VGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp EECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 478999999999988776 5788777777664 33322 22223678888888875
No 196
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=46.00 E-value=53 Score=23.83 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=39.4
Q ss_pred cccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHH
Q 030498 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 41 ~L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
++.+||.++|-++|..+.+ .+|.-..+.|.+. .|.+- ....=++..+-.+||..
T Consensus 17 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 17 FIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp EEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 3479999999999998887 7898877877764 34332 22233678888889875
No 197
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=45.07 E-value=47 Score=23.80 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=39.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|..+.+ .+|.-..|.+.... |.+ +....=.+..+..+||...-
T Consensus 51 V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 51 VFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp EETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 479999999999998886 68988888887542 222 22222357788888988643
No 198
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=44.80 E-value=1.3e+02 Score=28.75 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=49.8
Q ss_pred CCceEEEEEecCC---cee--EecCcccHHHHHHHHHHHhhh---hhhccc-CCcccccccee-eeeeeecCC-cccccC
Q 030498 63 GSAMRISILKLDG---TSF--AVMNSATVKDLKLAIKKKVND---MEQSNL-GHRHISWKHVW-ANYCLSHQN-QKLLDE 131 (176)
Q Consensus 63 G~Am~LtV~k~dG---~~l--~V~~~ATV~DLKkAI~~~~~~---~~~Rq~-G~~~ISW~~VW-~~f~L~~~~-~kL~dD 131 (176)
...|+|.|.-.+| +.+ -|..--||.+.|.-|-..+-. |.+|.. ..-..-|+.== ++..|.-.+ .....+
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 4567888886554 344 455678999999988777521 333211 11122233210 112222221 000111
Q ss_pred ----cchhhhcCCccCCEEEEEeeee
Q 030498 132 ----NSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 132 ----~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
-.+|.+|+|.||++|.++++..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceeEecchhhcCCCCCceEEEEeccc
Confidence 1489999999999999999874
No 199
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.76 E-value=65 Score=21.76 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=39.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+..|--|+ .=.+..+..+||...
T Consensus 30 V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~afV--~f~~~~~a~~A~~~l 81 (109)
T 1x4g_A 30 CGGIASGLTDQLMRQTFS-PFGQIMEIRVFPEKGYSFV--RFSTHESAAHAIVSV 81 (109)
T ss_dssp EECCSSCCCHHHHHHHHH-HHSCEEEEEEETTTTEEEE--EESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCCCCEEEE--EECCHHHHHHHHHHc
Confidence 479999999999998887 7898888888876554442 224667777888654
No 200
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.09 E-value=37 Score=22.86 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=38.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|..+.+ .+|.-..+.|.... |.+ +....=++..+..+||...-
T Consensus 20 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 20 IRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred EECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 478999999999998886 68887777776432 222 22223357788888887653
No 201
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=44.00 E-value=29 Score=23.91 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.0
Q ss_pred EEEEEecCCceeEecCcccHHHHHHHHHHHh
Q 030498 67 RISILKLDGTSFAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 67 ~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~ 97 (176)
.|+|..-+|+.+.++..+|+.|+=.+|...+
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~l 37 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYAIHSAV 37 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHHHCHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHHhhhhh
Confidence 5788888998889999999999887775544
No 202
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=43.69 E-value=58 Score=23.63 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=38.4
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
+.+||.++|-++|..+.. .+|.-..+.|... +|.+- ....=.|..+-.+||..
T Consensus 109 V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 109 VGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred EeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 478999999999998887 7898877888765 34433 22233567788888864
No 203
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=43.35 E-value=40 Score=25.35 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHH
Q 030498 44 DVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKK 95 (176)
Q Consensus 44 dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~ 95 (176)
-.|..+..+||..-..-++||+|.|.-. ...+.| +=.|=.||-+||+-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~---nnEL~I-PL~~Q~DLDkAvel 93 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYM---NNELSI-LLKNQDDLDKAIDI 93 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEE---CSSCEE-ECCSHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEe---cceEEE-ecccHHHHHHHHHH
Confidence 3678899999999999999999999887 233333 33577899999986
No 204
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=43.28 E-value=48 Score=21.02 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=36.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+... .|.+- ....=.+..+..+|++..
T Consensus 12 V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 12 VGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 69 (85)
T ss_dssp EECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh
Confidence 478999999999998775 6888777776543 33332 222225778888888754
No 205
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=43.18 E-value=66 Score=20.88 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=37.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-Ccee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-G~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.... |.+- ....=.+..+.++||...
T Consensus 21 v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 21 VGNLEARVREEILYELFL-QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp EECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 478999999999988775 57888788777642 4332 222335677888888754
No 206
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.09 E-value=37 Score=22.14 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=36.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+. --|+ .=.+..+..+||...
T Consensus 14 V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~--~afV--~f~~~~~a~~A~~~l 63 (90)
T 2dnp_A 14 VGNVSAACTSQELRSLFE-RRGRVIECDVVKD--YAFV--HMEKEADAKAAIAQL 63 (90)
T ss_dssp EESCCTTCCHHHHHHHHH-HHSCEEEEEECSS--CEEE--EESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-cCCCEEEEEEECC--EEEE--EECCHHHHHHHHHHh
Confidence 478999999999998876 6888777777644 2221 224777888888754
No 207
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=42.32 E-value=73 Score=22.47 Aligned_cols=55 Identities=29% Similarity=0.279 Sum_probs=38.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|....+ .+|.-..+.+.+. +|.+- ....=.+..+-.+|+...-
T Consensus 100 v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 100 IGMISKKCTENDIRVMFS-SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 368999999999988876 7888777777664 44332 2223367788888887654
No 208
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.87 E-value=77 Score=21.97 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=38.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.. .+|.-..+.+.+.-|--|+- =++..+-..||...
T Consensus 20 V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~kg~aFVe--f~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 20 IRKLPGEVTETEVIALGL-PFGKVTNILMLKGKNQAFLE--LATEEAAITMVNYY 71 (101)
T ss_dssp EESCCTTCCHHHHHHTTT-TTSCEEEEEEETTTTEEEEE--ESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEECCCCEEEEE--ECCHHHHHHHHHHh
Confidence 378999999999986654 79999889888765555521 24667777888753
No 209
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=41.84 E-value=18 Score=24.99 Aligned_cols=44 Identities=9% Similarity=0.217 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHhHhhhhccCCc---eEEEEEecCCcee--EecCcccHH
Q 030498 44 DVPKKPTLSDVDTLISLEMGSA---MRISILKLDGTSF--AVMNSATVK 87 (176)
Q Consensus 44 dlp~~~Tl~ev~~~Iale~G~A---m~LtV~k~dG~~l--~V~~~ATV~ 87 (176)
.+|+.-|+++|...|.-..|=+ |+|.....+|... ....+.|+.
T Consensus 20 r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~ 68 (86)
T 4b6w_A 20 RYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLG 68 (86)
T ss_dssp EEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGG
T ss_pred EcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHH
Confidence 4788999999999999999976 9999887666654 334445543
No 210
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.62 E-value=34 Score=23.00 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=35.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC---Ccee--EecCcccHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD---GTSF--AVMNSATVKDLKLAI 93 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d---G~~l--~V~~~ATV~DLKkAI 93 (176)
+..||.++|-++|..+.+ .+| -..+.|.... |.+- ....=++..+..+||
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 20 LGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp EESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred EeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 478999999999998887 568 7777776543 3332 222336788888898
No 211
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.51 E-value=70 Score=21.30 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=36.4
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
+..||.++|-++|..+.+ .+|.-..+.|.+. .|.+- ....=.+..+..+||..
T Consensus 21 V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 21 VGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 578999999999998876 5888878887765 33332 11122355677788876
No 212
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=41.46 E-value=50 Score=23.42 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=37.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..... .+|.-..+.+.+. +|.+- ....=.+..+-.+|+...
T Consensus 99 v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 99 IGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred EEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 468999999999998887 7898877887766 44433 212224556667777653
No 213
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.18 E-value=54 Score=21.81 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=37.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCc--eeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT--SFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~--~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+..+. -+....=.+..+..+||...
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cqi_A 20 VGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 75 (103)
T ss_dssp EESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHh
Confidence 478999999999988774 6788777888775333 22222225778888888754
No 214
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=41.17 E-value=61 Score=30.96 Aligned_cols=92 Identities=16% Similarity=0.271 Sum_probs=47.8
Q ss_pred CCceEEEEEecCCc------ee--EecCcccHHHHHHHHHHHh-hh--hhhcc-cCCcccccccee-eeeeeecCC-ccc
Q 030498 63 GSAMRISILKLDGT------SF--AVMNSATVKDLKLAIKKKV-ND--MEQSN-LGHRHISWKHVW-ANYCLSHQN-QKL 128 (176)
Q Consensus 63 G~Am~LtV~k~dG~------~l--~V~~~ATV~DLKkAI~~~~-~~--~~~Rq-~G~~~ISW~~VW-~~f~L~~~~-~kL 128 (176)
...|+|.|.-.+|. .+ -|..--||.+.|.-|-..+ .- |.+|. ...-..-|+.== ++..|.-.+ .-.
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 34578888765442 33 4556789999999887654 21 33321 111222343210 111222211 000
Q ss_pred ccC----cchhhhcCCccCCEEEEEeeeec
Q 030498 129 LDE----NSALQDCGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 129 ~dD----~~~L~dyGIkngd~L~Fk~~l~~ 154 (176)
..+ -.+|.+|+|.||++|.++++...
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~~ 364 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLTK 364 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred ecCcceeecchhhcCCCCCcEEEEEecccc
Confidence 111 14899999999999999988754
No 215
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=41.16 E-value=84 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=36.5
Q ss_pred hhhhccCCceEEEEEecCCce-e--------EecCcccHHHHHHHHHHHhhhhhh
Q 030498 57 LISLEMGSAMRISILKLDGTS-F--------AVMNSATVKDLKLAIKKKVNDMEQ 102 (176)
Q Consensus 57 ~Iale~G~Am~LtV~k~dG~~-l--------~V~~~ATV~DLKkAI~~~~~~~~~ 102 (176)
.|.-.+..-+-|.|.+..++. + -|+.+.||.++-..|.+...+.++
T Consensus 27 ~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~ 81 (130)
T 2zjd_A 27 LIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNAN 81 (130)
T ss_dssp HHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTT
T ss_pred HHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCC
Confidence 344566788889998887766 3 789999999999999999876554
No 216
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.81 E-value=72 Score=20.62 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=38.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.... |.+- ....=.+..+..+||...
T Consensus 20 v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 20 VFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp EESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 478999999999988886 58888777776542 3332 222336788888888764
No 217
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.73 E-value=34 Score=23.46 Aligned_cols=51 Identities=27% Similarity=0.327 Sum_probs=36.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIK 94 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~ 94 (176)
+..||.++|-+||..... .+| .+.+.|... +|.+- ....=++..|.++||.
T Consensus 20 V~nLp~~~te~~l~~~F~-~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 20 MRGLPYRATENDIYNFFS-PLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp EESCCTTCCHHHHHHSSC-SCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-HcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 478999999999988776 467 557776543 45443 2233367888999994
No 218
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.33 E-value=23 Score=23.79 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=35.4
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.... |.+- ....=.+..+..+||...
T Consensus 18 V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 75 (103)
T 2dnm_A 18 VDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75 (103)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHc
Confidence 478999999999998887 68887777776532 2221 111124556667777643
No 219
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.18 E-value=60 Score=22.41 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=37.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-Cce--eEecCcccHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTS--FAVMNSATVKDLKLAIK 94 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-G~~--l~V~~~ATV~DLKkAI~ 94 (176)
...||.++|-++|..... .+|.-..+.+.+.. |.+ +....=+|..+..+||.
T Consensus 16 V~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 16 IKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp EECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 378999999999998776 68988888887643 222 11112257788888887
No 220
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=40.08 E-value=48 Score=24.57 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=38.0
Q ss_pred CCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHH
Q 030498 45 VPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKK 95 (176)
Q Consensus 45 lp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~ 95 (176)
.|.-+..+||..-..-++||.|.|.-. ...+.| +=.|=.||-+||+-
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y~---nnEL~i-PL~~Q~DLDkAvel 82 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHYT---NNELVI-PLTTQDDLDKAVEL 82 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEEE---ETTEEE-ECCCHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe---cceeEE-ecccHHHHHHHHHH
Confidence 577899999999999999999999887 223333 33578899999986
No 221
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=39.96 E-value=31 Score=21.57 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=34.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIK 94 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~ 94 (176)
++.||+++|-++|..... .+|.-..+.+.... |.+ +....=.+..+.++|++
T Consensus 4 v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 478999999999998776 58887777776542 332 21112235566777764
No 222
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=39.91 E-value=11 Score=25.37 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhhhcCCcccCCCCCCCHHHHhHhhh
Q 030498 23 TMKKARLHSTLTALLDDPILADVPKKPTLSDVDTLIS 59 (176)
Q Consensus 23 ~~~~~~~~~~l~~ll~Dp~L~dlp~~~Tl~ev~~~Ia 59 (176)
+.+.+.++..|..+..+..|+.+....++++|...|.
T Consensus 51 ~~r~~~le~~l~~l~~~~~l~~~~~~~s~~~i~~~l~ 87 (89)
T 3coq_A 51 ESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLT 87 (89)
T ss_dssp HHHHHHHHHHHHHHCSSSCHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCchhhHHhhcCCCHHHHHHHHh
Confidence 5577788888999888888877777888998887764
No 223
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.89 E-value=75 Score=20.56 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=35.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIK 94 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~ 94 (176)
+..||.++|-+||.....-- ....+.+.+. +|.+- ....=.+..+..+||.
T Consensus 15 v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 47899999999999888743 5666666654 44433 3233367888899987
No 224
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.83 E-value=31 Score=22.58 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=35.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEE-EEEe--cCCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRI-SILK--LDGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~L-tV~k--~dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+.+||.++|-++|..+.. .+|.-..+ .|.+ ..|.+- ....=.+..+..+||...
T Consensus 10 V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 68 (96)
T 1x5t_A 10 IGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 68 (96)
T ss_dssp EECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHc
Confidence 478999999999988776 57876666 5554 334332 222335778888888743
No 225
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=39.53 E-value=60 Score=21.07 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=35.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCc--eEEEEEecCCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSA--MRISILKLDGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~A--m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.+ .+|.- +.+...+..|.+- ....=++..+..+||+..
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (95)
T 2ek1_A 20 VQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (95)
T ss_dssp EECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHh
Confidence 478999999999988775 46654 3344444555443 222336778888898854
No 226
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=39.08 E-value=26 Score=24.84 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=33.9
Q ss_pred cCCCCCCCHHHHhHhhhhccC---CceEEEEEecCCcee-Ee-cCcccHHH
Q 030498 43 ADVPKKPTLSDVDTLISLEMG---SAMRISILKLDGTSF-AV-MNSATVKD 88 (176)
Q Consensus 43 ~dlp~~~Tl~ev~~~Iale~G---~Am~LtV~k~dG~~l-~V-~~~ATV~D 88 (176)
-++++.-|+++|...|.-..| ..|+|.....+|+.+ .+ ..+.|+.+
T Consensus 31 ~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 31 ARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp EEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred EEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 378999999999999999999 459998876555543 22 34455544
No 227
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=38.45 E-value=84 Score=23.05 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=37.4
Q ss_pred cCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 43 ADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 43 ~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
..||.++|-++|..+.+ .+|.-..|.|... .|.+- .+..=.|..+..+||...
T Consensus 78 ~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 134 (165)
T 1rk8_A 78 TSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 (165)
T ss_dssp ESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh
Confidence 78999999999988775 6788877777764 44332 222335778888888754
No 228
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=38.17 E-value=64 Score=22.97 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhh
Q 030498 63 GSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVND 99 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~ 99 (176)
|++|+|.+.-. |..+ .|+++.|..+|...|...+..
T Consensus 4 ~~~vkvK~~~~-gdi~~~~v~~~i~~~~L~~kv~~~~~~ 41 (89)
T 1vd2_A 4 GSQVRVKAYYR-GDIMITHFEPSISFEGLCNEVRDMCSF 41 (89)
T ss_dssp SSCEEEEEESS-SCEEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred CCeEEEEEEeC-CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 67899998876 4455 889999999999999998864
No 229
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.09 E-value=34 Score=23.53 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=37.4
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.+.+..+.+ +....=++..+..+|+...
T Consensus 34 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l 89 (109)
T 2err_A 34 VSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 89 (109)
T ss_dssp EESCCTTCCHHHHHHHGG-GTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHH
T ss_pred EECCCCcCCHHHHHHHHH-hcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHc
Confidence 478999999999988776 78888788887654432 2222224667777888754
No 230
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=37.88 E-value=24 Score=23.88 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=35.5
Q ss_pred eEEEEEecCCce---eEecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCcc
Q 030498 66 MRISILKLDGTS---FAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRN 142 (176)
Q Consensus 66 m~LtV~k~dG~~---l~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkn 142 (176)
|+|+|.-- |.. ++++..+||.||=+.+. .-++ . ....-+++.+..|. +.+
T Consensus 1 M~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~Lg----l~~~-----------~----VvV~vNG~~v~~d~-------~l~ 53 (74)
T 2l32_A 1 MNVTVEVV-GEETSEVAVDDDGTYADLVRAVD----LSPH-----------E----VTVLVDGRPVPEDQ-------SVE 53 (74)
T ss_dssp CEEEEECS-SSSEEEEECSTTCSHHHHHHTTC----CCSS-----------C----CCEECCCCCCCTTS-------SSC
T ss_pred CEEEEEEe-CccceeEEcCCCCcHHHHHHHcC----CCcc-----------e----EEEEECCEECCHHH-------CCC
Confidence 56665544 544 38899999999854321 1111 1 12223343333332 346
Q ss_pred CCEEEEEeeeecC
Q 030498 143 NSQVQFVPFVLSK 155 (176)
Q Consensus 143 gd~L~Fk~~l~~~ 155 (176)
||.|.+.+-+.+-
T Consensus 54 GD~VeIv~~V~G~ 66 (74)
T 2l32_A 54 VDRVKVLRLIKGG 66 (74)
T ss_dssp CCCEEECSSCSCC
T ss_pred CCEEEEEEeeccc
Confidence 9999998877653
No 231
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.44 E-value=88 Score=20.69 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=38.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
+..||.++|-++|..+.+ .+|.-..+.|... .|.+- ....=.+..+..+||..
T Consensus 20 v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 20 VLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp EESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 478999999999998875 5888877777664 35443 22233577888888874
No 232
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=37.18 E-value=46 Score=23.26 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=38.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-Ccee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-G~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+.+||+++|-++|..+.. .+|.-..+.+.+.. |.+- ....=.+..+..+|++..-
T Consensus 5 V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp EEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 468999999999999887 78987777776543 3222 2223367888888986543
No 233
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=36.64 E-value=50 Score=22.76 Aligned_cols=51 Identities=27% Similarity=0.312 Sum_probs=37.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAI 93 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI 93 (176)
+..||.++|-++|..+.. .+|.-..+.+... .|.+- ....=.+..+..+||
T Consensus 41 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 41 VGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp EEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 478999999999988876 7888777777664 45443 222336777888888
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=36.53 E-value=57 Score=22.37 Aligned_cols=53 Identities=8% Similarity=0.172 Sum_probs=37.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~ 95 (176)
+..||.++|-++|..+.. .+|.-..+.|.+.. |.+ +....=.+..+..+||..
T Consensus 30 V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 30 IGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 478999999999998876 68988888887643 332 222222577888888874
No 235
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.24 E-value=65 Score=21.11 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=35.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCc--eEEEEEecCCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSA--MRISILKLDGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~A--m~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.+ .+|.- +.+...+..|.+- ....=++..+..+||+..
T Consensus 20 v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (98)
T 2cqp_A 20 VQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (98)
T ss_dssp EESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 478999999999988775 45654 3344444555443 222336778888888754
No 236
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=36.06 E-value=1.1e+02 Score=21.28 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=39.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||..+|-++|..+.. .+|.-..+.+... +|.+- ....=++..+-.+|++..-
T Consensus 93 v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 93 VSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 478999999999998876 6888777777665 34332 2223367788888887654
No 237
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=36.04 E-value=42 Score=24.16 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=35.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
+.+||.++|-++|..+. -.+|.-..+.|.+. .|.+- ....=++..+..+||..
T Consensus 75 v~nl~~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp EESCCTTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 37889999998888877 46787777777654 34332 22223567777888764
No 238
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.92 E-value=1e+02 Score=21.95 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=39.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.. .+|.-..+.|.+.-|--|+ .=++..+-..||...
T Consensus 21 V~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~kGfaFV--eF~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 21 IRKLPIDVTEGEVISLGL-PFGKVTNLLMLKGKNQAFI--EMNTEEAANTMVNYY 72 (105)
T ss_dssp ECSCCTTSCHHHHHHHHH-HHCCEEEEEEETTTTEEEE--EESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcCCCEEEE--EECCHHHHHHHHHHh
Confidence 479999999999987664 7999999999876555552 124677888888754
No 239
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=35.82 E-value=32 Score=25.73 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=33.1
Q ss_pred CCCCCCHHH----HhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHH
Q 030498 45 VPKKPTLSD----VDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAI 93 (176)
Q Consensus 45 lp~~~Tl~e----v~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI 93 (176)
||.+.|+.+ |+..|.|..++|+-|.|. ++ ..+.++||.+|=...
T Consensus 54 Vp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn---~~--~p~~~~~m~~lY~~~ 101 (119)
T 3h9d_A 54 VPSDLTVGQFVSVLRKRVQLEAESALFVYTN---DT--VLPSSAQMADIYSKY 101 (119)
T ss_dssp EETTCBHHHHHHHHHHHHTCCTTSCCEEEET---TE--ECCTTSBHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEEEC---Cc--CCCccchHHHHHHHc
Confidence 588889877 567778999999999983 33 456789998875443
No 240
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=35.79 E-value=35 Score=24.42 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhcCCcc----cCCCCCCCHHHHh
Q 030498 26 KARLHSTLTALLDDPIL----ADVPKKPTLSDVD 55 (176)
Q Consensus 26 ~~~~~~~l~~ll~Dp~L----~dlp~~~Tl~ev~ 55 (176)
...+++.+..|++||.. ..=|.++|-+.|+
T Consensus 18 ~~~~~~~~~~vl~dP~V~~Fl~~h~~~l~~~~I~ 51 (106)
T 2k7r_A 18 QKRLEQMKEKVMKDQDVQAFLKENEEVIDQKMIE 51 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHChhhCCHHHHH
Confidence 44558899999999832 3334445544444
No 241
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.61 E-value=53 Score=21.74 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=37.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+... .|.+ +....=++..+..+||+..
T Consensus 17 V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp EESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 478999999999988876 4787777776543 2322 2333446788888888754
No 242
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=35.38 E-value=62 Score=22.86 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=29.0
Q ss_pred ceEEEEEecCCceeEecCcccHHHHHHHHHHHhhh
Q 030498 65 AMRISILKLDGTSFAVMNSATVKDLKLAIKKKVND 99 (176)
Q Consensus 65 Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~~~ 99 (176)
.|+|.|...+--.|.||.++++.+|...|.++...
T Consensus 5 ~~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l 39 (83)
T 1oey_A 5 AYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLEL 39 (83)
T ss_dssp CEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred cEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 48999998842222999999999999999999865
No 243
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.21 E-value=42 Score=20.92 Aligned_cols=54 Identities=7% Similarity=0.170 Sum_probs=35.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||....+ .+|.-..+.+.+.. |.+ +....=.+..+..+|+...
T Consensus 5 v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 5 IGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp EESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 478999999999988775 57877777776642 332 2222224556667777643
No 244
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=34.56 E-value=1e+02 Score=22.89 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=38.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccC--CceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMG--SAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G--~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
...||.++|-++|..+. -.+| .-..+.|... .|.+- -...=++..+..+||...
T Consensus 60 VgnLp~~~te~~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l 119 (156)
T 3n9u_C 60 VGSFSWWTTDQQLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELL 119 (156)
T ss_dssp EECCCTTCCHHHHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHH-HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 37999999999999887 4788 7777777644 56553 222235788888888763
No 245
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=34.48 E-value=12 Score=25.16 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=32.2
Q ss_pred CCceeEecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeeee
Q 030498 74 DGTSFAVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVL 153 (176)
Q Consensus 74 dG~~l~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l~ 153 (176)
++..+.++..+||.||...+. ++. . ......+++ +.+. ++-+++||+|-|.+-+.
T Consensus 21 n~~~~~~~~~~Tv~dLl~~L~-----~~~--~------------~v~VavNg~-~v~~-----~~~L~dGD~V~i~ppv~ 75 (77)
T 1rws_A 21 IEKEIEWREGMKVRDILRAVG-----FNT--E------------SAIAKVNGK-VVLE-----DDEVKDGDFVEVIPVVS 75 (77)
T ss_dssp CCCCCCCCSSCCHHHHHHTTT-----CSS--C------------SSCEEETTE-EECS-----SSCCCSSCCCBCSCCCC
T ss_pred CCEEEECCCCCcHHHHHHHhC-----CCC--c------------CEEEEECCE-ECCC-----CCCcCCCCEEEEEcccc
Confidence 555556677899999987663 111 0 011222232 3332 36799999998877553
No 246
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.31 E-value=69 Score=21.08 Aligned_cols=52 Identities=8% Similarity=0.248 Sum_probs=36.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCce--eEecCcccHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FAVMNSATVKDLKLAIK 94 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~--l~V~~~ATV~DLKkAI~ 94 (176)
+..||.++|-+||..+.+ .+|.-..+.+.+. .|.+ +....=++..+..+||.
T Consensus 15 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 15 VGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp EESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 478999999999988876 5888878887654 2322 22222367888888886
No 247
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=34.29 E-value=18 Score=24.27 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=36.0
Q ss_pred cccCCCCCCCHHHHhHhhhhccC-CceEEEEEe--cCCce--eEecCcccHHHHHHHHHHH
Q 030498 41 ILADVPKKPTLSDVDTLISLEMG-SAMRISILK--LDGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 41 ~L~dlp~~~Tl~ev~~~Iale~G-~Am~LtV~k--~dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
++..||.++|-+||..+.+ .+| .-..|.|.+ ..|.+ +....=+|..+-.+||+..
T Consensus 5 ~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp EEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 3578999999999998886 567 444455543 23433 2222236788888998753
No 248
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=33.91 E-value=82 Score=22.98 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=29.5
Q ss_pred CceEEEEEecC-------Ccee--EecCcccHHHHHHHHHHHhhhh
Q 030498 64 SAMRISILKLD-------GTSF--AVMNSATVKDLKLAIKKKVNDM 100 (176)
Q Consensus 64 ~Am~LtV~k~d-------G~~l--~V~~~ATV~DLKkAI~~~~~~~ 100 (176)
++|+|.|...+ +..+ .|+++.+..||...|.+++...
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 45899998764 2223 8899999999999999999653
No 249
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.76 E-value=77 Score=20.60 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=35.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+. +....=.+..+-.+||...
T Consensus 15 V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 15 VGNISPTCTNQELRAKFE-EYGPVIECDIVKD----YAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp EESCCSSCCHHHHHHHHH-TTSCCCEEEECSS----EEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEECC----EEEEEECCHHHHHHHHHHh
Confidence 478999999999998876 5888878877744 3111224677778888654
No 250
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.74 E-value=90 Score=22.69 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=38.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+. -.+|.-..+.|.+.-|--|+ .=.+..+-.+||...
T Consensus 36 VgNLp~~vte~dL~~lF-~~fG~V~~v~i~~~kG~AFV--eF~~~e~A~~Ai~~l 87 (119)
T 2ad9_A 36 IRKLPIDVTEGEVISLG-LPFGKVTNLLMLKGKNQAFI--EMNTEEAANTMVNYY 87 (119)
T ss_dssp EESCCTTCCHHHHHHHH-TTTSCCCEEEEEGGGTEEEE--ECSCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHH-HhcCCEEEEEEeCCCCEEEE--EECCHHHHHHHHHHh
Confidence 37999999999998765 47999999999876555552 224667778888754
No 251
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=33.69 E-value=1.2e+02 Score=21.26 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=39.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|..+.. .+|.-..+.+.+. +|.+- ....=.|..+-.+|+...-
T Consensus 94 v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 94 VTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp EESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 468999999999998886 6888777777765 34432 2223367888888887654
No 252
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=33.67 E-value=39 Score=24.04 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=34.0
Q ss_pred cCCCCCCCHHHHhHhhhhccC-CceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 43 ADVPKKPTLSDVDTLISLEMG-SAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 43 ~dlp~~~Tl~ev~~~Iale~G-~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
..||.++|-++|..+.. .+| .-..+.|...+.+-+-...=++..|.++||...
T Consensus 34 gnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~l 87 (111)
T 2jvr_A 34 KNLPEGCSWQDLKDLAR-ENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERL 87 (111)
T ss_dssp ECSSCCCCHHHHHHHHH-HHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHc
Confidence 68999999999887765 567 555555543222223111225788888998764
No 253
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=33.59 E-value=1.2e+02 Score=21.02 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=39.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
...||.++|-++|..+.. .+|.-..+.|.+.. |.+- ....=.+..+-++||+..-
T Consensus 11 V~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 11 FARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp EESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 478999999999988774 78998888887653 4433 2223357788889998643
No 254
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=33.56 E-value=78 Score=24.53 Aligned_cols=66 Identities=8% Similarity=0.011 Sum_probs=36.3
Q ss_pred EecCcccHHHHHHHHHHHhhhhhhc--ccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEeeeec
Q 030498 79 AVMNSATVKDLKLAIKKKVNDMEQS--NLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPFVLS 154 (176)
Q Consensus 79 ~V~~~ATV~DLKkAI~~~~~~~~~R--q~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~l~~ 154 (176)
.|+. +||.||..++...+...... ..| -+-.. +...-|........ -.++-+++||+|.|.+-+.+
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~-------~l~~~-v~VaVNg~~v~~~~-~~dt~L~dGDeVai~PpVsG 86 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPALKEELFEGE-------GLAER-VSVFLEGRDVRYLQ-GLSTPLSPGATLDLFPPVAG 86 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGGGHHHHEETT-------EECTT-CEEEETTEEGGGTT-GGGCBCCTTCEEEEECSCCS
T ss_pred EECC-CcHHHHHHHHHhhChhhhhhhhccc-------ccCCc-EEEEECCEECCCcC-CCccCCCCCCEEEEECcccc
Confidence 4554 89999999988775422110 000 00111 22233332333211 12567999999999998865
No 255
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=33.54 E-value=1.1e+02 Score=22.46 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=39.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-+||..+.. .+|.-..+.|.+. +|.+- ....=.|..+-.+|+...-
T Consensus 130 v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 188 (216)
T 2qfj_A 130 VASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 188 (216)
T ss_dssp EECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc
Confidence 369999999999998775 6888888888765 44433 2223367888888887654
No 256
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=33.21 E-value=97 Score=23.47 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=40.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.|.+..+.+- ....=.+..+-.+||+..
T Consensus 108 v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 108 IKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ECCcccccHHHHHHHHHh-hcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHh
Confidence 478999999999988775 789888888877665442 222336778888998864
No 257
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=33.17 E-value=1.1e+02 Score=20.81 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=38.4
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+. .|.+- ....=++..+..+||+..
T Consensus 31 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 88 (108)
T 2jrs_A 31 VGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88 (108)
T ss_dssp EECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 479999999999998874 6888777777654 34433 222335788888888754
No 258
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.15 E-value=93 Score=19.66 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=38.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+..|-.|+ .=.+..+-.+|+...
T Consensus 17 V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~kg~afV--~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFY-QFGEIRTITVVQRQQCAFI--QFATRQAAEVAAEKS 68 (85)
T ss_dssp EECCTTTSCHHHHHHHHH-TTSCEEEEEEEGGGTEEEE--EESSHHHHHHHHHTT
T ss_pred EcCCCCCCCHHHHHHHHH-hCCCEeEEEEECCCCEEEE--EECCHHHHHHHHHHh
Confidence 478999999999998876 6898888888875554442 124677778888754
No 259
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=33.06 E-value=69 Score=23.35 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHhh
Q 030498 85 TVKDLKLAIKKKVN 98 (176)
Q Consensus 85 TV~DLKkAI~~~~~ 98 (176)
|..+|+..|++.|+
T Consensus 43 s~~~L~~~V~~lFp 56 (102)
T 2kkc_A 43 PCERLLSRVAVLFP 56 (102)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHcc
Confidence 89999999999985
No 260
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.04 E-value=1.2e+02 Score=20.97 Aligned_cols=51 Identities=6% Similarity=0.144 Sum_probs=38.2
Q ss_pred cCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 43 ADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 43 ~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
..||.++|-+||..+.+ .+|.-..|.+.+.-|--|+ .=++..+-.+||...
T Consensus 21 ~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~kg~aFV--ef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 21 RGLCESVVEADLVEALE-KFGTICYVMMMPFKRQALV--EFENIDSAKECVTFA 71 (104)
T ss_dssp ESCCSSCCHHHHHHHHT-TTSCEEEEEEETTTTEEEE--EESSHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHH-hCCCEEEEEEECCCCEEEE--EECCHHHHHHHHHHh
Confidence 78999999999987664 7999888888775454442 224678888888754
No 261
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=32.84 E-value=96 Score=19.75 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=36.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~ 95 (176)
+..||.++|-++|.... -.+|.-..+.+.... |.+- ....=.+..+..+||+.
T Consensus 16 V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 16 VGGLSWDTSKKDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EECCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 47899999999999887 468887777776543 4432 22222466677778743
No 262
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=32.52 E-value=67 Score=21.45 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=34.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.+.+. -.|+ .=.+..+..+||...
T Consensus 16 V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~--~afV--~f~~~~~a~~A~~~l 65 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFS-QFGKLERVKKLKD--YAFI--HFDERDGAVKAMEEM 65 (103)
T ss_dssp EECCCTTCCHHHHHHHHH-HHSCEEEEEECSS--CEEE--EESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC--EEEE--EeCCHHHHHHHHHHH
Confidence 478999999999988776 5788777776643 2221 224677888888754
No 263
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=32.44 E-value=97 Score=23.73 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=37.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-Ccee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-G~~l--~V~~~ATV~DLKkAI~~ 95 (176)
...||.++|.++|....+ .+|.-..|.+.+.. |.+- ....=.|..+..+||..
T Consensus 114 V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 114 IKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp EECCCTTCCHHHHHHHHT-TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ecCCCCcCCHHHHHHHHh-cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 378999999999998876 78988888877633 2221 22223567788888864
No 264
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=32.40 E-value=1.2e+02 Score=21.33 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=38.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCc----ee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT----SF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~----~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||+++|-++|..+.. .+|.-..+.+.+.... +- ....=++..+-.+|++..-
T Consensus 8 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 468999999999998875 6888777777654322 22 2223467788888887653
No 265
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.10 E-value=77 Score=21.55 Aligned_cols=54 Identities=9% Similarity=0.206 Sum_probs=37.9
Q ss_pred cccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHH
Q 030498 41 ILADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKK 95 (176)
Q Consensus 41 ~L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~ 95 (176)
++..||.++|-++|..+.+ .+|.-..+.|.... |.+ +....=.+..+..+||..
T Consensus 31 ~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 31 FIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp EEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 3578999999999998874 68888888887642 332 222223577788888865
No 266
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=32.06 E-value=54 Score=21.86 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=37.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCce--eEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~--l~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|..+.. .+|.-..+.|... .|.+ +....=++..+..+||...-
T Consensus 18 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 18 IGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp EESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 478999999999988776 5787777777653 2332 22223357788888887543
No 267
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.75 E-value=1.2e+02 Score=20.44 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=37.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.|.+. .|.+- ....=.+..+..+||...
T Consensus 30 V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 86 (114)
T 1x5o_A 30 ISNLPLSMDEQELENMLK-PFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 86 (114)
T ss_dssp EESCCTTCCHHHHHHTTT-TTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 478999999999988775 5888777777664 33332 222235777888888754
No 268
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=31.73 E-value=31 Score=23.75 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=35.8
Q ss_pred cccCCCCCCCHHHHhHhhhhccCC--ceEEEEEe--cCCce--eEecCcccHHHHHHHHHHHh
Q 030498 41 ILADVPKKPTLSDVDTLISLEMGS--AMRISILK--LDGTS--FAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 41 ~L~dlp~~~Tl~ev~~~Iale~G~--Am~LtV~k--~dG~~--l~V~~~ATV~DLKkAI~~~~ 97 (176)
++..||+++|-++|..+.+ .+|. ...|.+.+ ..|.+ +-...=.+..+-.+||+..-
T Consensus 13 fV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 13 ILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ 74 (95)
T ss_dssp EEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc
Confidence 3478999999999999886 6774 33454443 33544 21112246677788887653
No 269
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=31.71 E-value=54 Score=22.94 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHhHhhhhccC---CceEEEEEecCCcee-Ee-cCcccHHH
Q 030498 44 DVPKKPTLSDVDTLISLEMG---SAMRISILKLDGTSF-AV-MNSATVKD 88 (176)
Q Consensus 44 dlp~~~Tl~ev~~~Iale~G---~Am~LtV~k~dG~~l-~V-~~~ATV~D 88 (176)
++++.-|+++|...|+-..| ..++|.... +|+.+ .+ ..+.|+.+
T Consensus 33 ~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 33 KLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp EEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHH
T ss_pred EeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhH
Confidence 68899999999999999999 458887764 45443 33 44566654
No 270
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.53 E-value=76 Score=22.04 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=36.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+. .|.+ +....=++..+.++||+..
T Consensus 68 v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 125 (140)
T 2ku7_A 68 VGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 125 (140)
T ss_dssp EECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS
T ss_pred EEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 478999999999988875 5788777777553 2322 1222235778888888643
No 271
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.48 E-value=1.1e+02 Score=19.80 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=36.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCcee-EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF-AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l-~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+ |--| .. .+..+..+||...
T Consensus 13 V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~--g~afV~f---~~~~~A~~A~~~l 62 (90)
T 2dnq_A 13 IGNLPREATEQEIRSLFE-QYGKVLECDIIK--NYGFVHI---EDKTAAEDAIRNL 62 (90)
T ss_dssp EESCCSSCCHHHHHHHHH-TSSCEEEEEEET--TEEEEEE---SSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEC--CEEEEEE---CCHHHHHHHHHHh
Confidence 478999999999988776 688887887773 4333 32 3677888888754
No 272
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=31.37 E-value=50 Score=28.74 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=28.7
Q ss_pred CCceEEEEEecCCceeEecCcccHHHHHHHHHHHhhhhh
Q 030498 63 GSAMRISILKLDGTSFAVMNSATVKDLKLAIKKKVNDME 101 (176)
Q Consensus 63 G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~~~~~ 101 (176)
|.+|++++.+.++....+....+-.+++.++.+.+..+.
T Consensus 1 ~~~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~ 39 (392)
T 1t11_A 1 GSHMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIA 39 (392)
T ss_dssp --CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHh
Confidence 678999999999987755556667788888888876433
No 273
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=31.27 E-value=72 Score=20.23 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=36.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCc---e--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGT---S--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~---~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.....+ . +....=.+..+..+|+...
T Consensus 9 V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (88)
T 4a8x_A 9 IGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHM 67 (88)
T ss_dssp EECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHc
Confidence 478999999999998875 5887777777554321 1 2222235778888888854
No 274
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=30.77 E-value=49 Score=21.12 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=35.5
Q ss_pred ccCCCCCC------CHHHHhHhhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKP------TLSDVDTLISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~------Tl~ev~~~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
...||..+ |-++|..+.+ .+|.-..+.+.+..|.+- ....=++..+..+||..
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 36799888 5677776664 689888888776666543 22223567778888764
No 275
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.69 E-value=53 Score=22.23 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=35.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCce--------EEEEEe--cCCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAM--------RISILK--LDGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am--------~LtV~k--~dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-. .+.|.. ..|.+- ....=.|..+..+||...
T Consensus 20 V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 20 VQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp EECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 478999999999987775 466654 355554 334432 222336788888998754
No 276
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.40 E-value=97 Score=19.97 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=36.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.+.... |.+ +....=.+..+..+||+..
T Consensus 21 V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 78 (94)
T 2e5h_A 21 VSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 78 (94)
T ss_dssp EESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc
Confidence 478999999999988875 57887777776542 222 1112225778888888743
No 277
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=30.31 E-value=45 Score=22.72 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=43.8
Q ss_pred eEEEEEecCCceeEec--CcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccC
Q 030498 66 MRISILKLDGTSFAVM--NSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNN 143 (176)
Q Consensus 66 m~LtV~k~dG~~l~V~--~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkng 143 (176)
|+|+| ||+.+.++ ..+||.||-..+.-. .++ + +....+++ ++ ......++-+++|
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l~~~---~~~---~------------vAVavNg~-iV-pr~~~~~~~L~dG 57 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSALKVA---QAE---Y------------VTVELNGE-VL-EREAFDATTVKDG 57 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHHTCS---CTT---T------------CCEEETTE-EC-CTTHHHHCEECSS
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHcCCC---CCC---c------------EEEEECCE-EC-ChHHcCcccCCCC
Confidence 55655 68888777 789999997755211 011 0 12333343 22 2446667789999
Q ss_pred CEEEEEeeeecCCcccc
Q 030498 144 SQVQFVPFVLSKGSGKH 160 (176)
Q Consensus 144 d~L~Fk~~l~~~~~~~~ 160 (176)
|.|-+.+-+.+ |+-.|
T Consensus 58 D~IEIv~~VgG-G~~~~ 73 (78)
T 2k5p_A 58 DAVEFLYFMGG-GKLEH 73 (78)
T ss_dssp BCEEECCCCCC-SCCCC
T ss_pred CEEEEEeeecC-CCchh
Confidence 99999888755 44443
No 278
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=30.15 E-value=62 Score=22.82 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=36.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
+.+||.++|-++|..+.. .+|.-..+.+.+. .|.+- ..-.=++..+..+|+..
T Consensus 8 v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 8 IGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp ECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 478999999999998876 6888777777654 23332 11122466777788874
No 279
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=30.10 E-value=80 Score=27.71 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=39.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..|.|... .|.+- .+..=++..+...||+..
T Consensus 107 V~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 107 VARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred EeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 479999999999988876 4898888877654 34332 333446888888998764
No 280
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=29.75 E-value=28 Score=25.26 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=33.3
Q ss_pred cCCCCCCCHHHHhHhhhhccCCc---eEEEEEecCCcee-Ee-cCcccHH
Q 030498 43 ADVPKKPTLSDVDTLISLEMGSA---MRISILKLDGTSF-AV-MNSATVK 87 (176)
Q Consensus 43 ~dlp~~~Tl~ev~~~Iale~G~A---m~LtV~k~dG~~l-~V-~~~ATV~ 87 (176)
-++|+..|+++|...|+-..|-+ |+|.....+|+.+ .+ ..+.|+.
T Consensus 22 ~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~ 71 (122)
T 1t0y_A 22 KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLK 71 (122)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTT
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHH
Confidence 37889999999999999999944 9998876556544 33 3444543
No 281
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.64 E-value=1.2e+02 Score=21.81 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=36.6
Q ss_pred ccCCCCCCCHHHHhHhhhhccCC------ceEEEEEecCCcee--EecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGS------AMRISILKLDGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~------Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
+..||.++|-+||....+ .+|. .++|... .+|.+- ....=+|..|.++||..
T Consensus 28 V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 28 MRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp ECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh
Confidence 379999999999998886 4553 4554443 467654 33344678899999975
No 282
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=29.50 E-value=56 Score=22.31 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=35.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Cce--eEecCcccHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTS--FAVMNSATVKDLKLAIKK 95 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~--l~V~~~ATV~DLKkAI~~ 95 (176)
+..||.++|-+||..+.. .+|.-..+.+.+.. |.+ +....=.+..+..+||..
T Consensus 45 V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 45 IYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 479999999999998876 68887777776542 322 211122466677778764
No 283
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=29.45 E-value=72 Score=24.20 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=37.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-Ccee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-G~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.+ .+|.-..+.|.... |.+- ....=.+..+..+||...
T Consensus 93 V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~l 149 (177)
T 2f3j_A 93 VSNLDFGVSDADIQELFA-EFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQY 149 (177)
T ss_dssp EECCCSCCCHHHHHHHHH-HTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHh
Confidence 478999999999998887 58887777776543 3322 222225777888888754
No 284
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.75 E-value=1.1e+02 Score=20.19 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=35.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAI 93 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI 93 (176)
+..||.++|-++|..+.+-- | -..+.+.+.. |.+- ....=.+..+..+||
T Consensus 20 V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 20 VGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp EESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG
T ss_pred EeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 57899999999999888755 6 7677776543 4332 222235788888888
No 285
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=28.70 E-value=69 Score=25.34 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=36.0
Q ss_pred cccCCCCCCCHHHHhHhhhhccC--CceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 41 ILADVPKKPTLSDVDTLISLEMG--SAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 41 ~L~dlp~~~Tl~ev~~~Iale~G--~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
++..||.++|-++|..+.. .+| .-..|.|.+. .|.+- -...=++..+.++||+..
T Consensus 72 fVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l 132 (229)
T 3q2s_C 72 YIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 132 (229)
T ss_dssp EEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS
T ss_pred EEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 3478999999999888874 788 7777777654 45433 111224556677787643
No 286
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=28.62 E-value=1e+02 Score=22.70 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=37.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+.+||.++|-++|..+.+ .+|.-..+.+.+. +|.+- ....=++..+-.+|++..
T Consensus 33 V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 33 VGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp EECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHc
Confidence 478999999999998875 6788777777553 23222 222235788888898854
No 287
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=28.26 E-value=89 Score=21.89 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=37.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+.+||+++|-++|..+.. .+|.-..+.+.+. +|.+- ....=++..+-++|+...
T Consensus 8 v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (168)
T 1b7f_A 8 VNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65 (168)
T ss_dssp EECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 478999999999998875 5788767776653 44432 222235788888888754
No 288
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.13 E-value=91 Score=20.52 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=32.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-- +.+.....+-+....=.+..+..+||...
T Consensus 24 V~nL~~~~t~~~l~~~F~-~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l 76 (97)
T 2e5j_A 24 VGNLPRDARVSDLKRALR-ELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCL 76 (97)
T ss_dssp EECCCTTCCHHHHHHHHH-HTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred EeCCCCcCcHHHHHHHHH-hcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHh
Confidence 468999999999988776 667542 33333322233111224677778888754
No 289
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=28.12 E-value=1 Score=31.86 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.6
Q ss_pred CcchhhhcCCccCCEEEEEeeeecCCcc
Q 030498 131 ENSALQDCGVRNNSQVQFVPFVLSKGSG 158 (176)
Q Consensus 131 D~~~L~dyGIkngd~L~Fk~~l~~~~~~ 158 (176)
+...|++.||+-||.|...+++..+..+
T Consensus 40 ~~~~Lr~LGi~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 40 NNSMLRTLGLREGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp CHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHcCCchhhHHHHHHHHHHHhCc
Confidence 6789999999999999988888776443
No 290
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=27.97 E-value=1e+02 Score=20.10 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=27.7
Q ss_pred CCcc--cCCCCCCCHHHHhHhhhhccCCceEEEEEecCCcee
Q 030498 39 DPIL--ADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSF 78 (176)
Q Consensus 39 Dp~L--~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l 78 (176)
|-++ ++.|-. +.+++...|.-..|+.++|+|.+ +|+.+
T Consensus 26 D~I~~ing~~v~-~~~~~~~~l~~~~g~~v~l~v~R-~g~~~ 65 (91)
T 2zpm_A 26 DRIVXVDGQPLT-QWVTFVMLVRDNPGXSLALEIER-QGSPL 65 (91)
T ss_dssp CEEEEETTEECC-CHHHHHHHHHHCTTCCEEEEEEE-TTEEE
T ss_pred CEEEEECCeEcC-CHHHHHHHHhcCCCCeEEEEEEE-CCeEE
Confidence 5555 243332 67899988887789999999976 67766
No 291
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=27.92 E-value=2e+02 Score=21.80 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=54.4
Q ss_pred ccCCceEEEEEecCCcee------EecCcccHHHHHHHHHHH-hhhhhhcccCCccccccceeeeeeeecCCcccc-cCc
Q 030498 61 EMGSAMRISILKLDGTSF------AVMNSATVKDLKLAIKKK-VNDMEQSNLGHRHISWKHVWANYCLSHQNQKLL-DEN 132 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l------~V~~~ATV~DLKkAI~~~-~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~-dD~ 132 (176)
.+|.++-|+|-=.+---| .|+++.|..+|=..+-.- +...|. -.+|.|.-|= |+.. ++... |.+
T Consensus 19 nF~g~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPD----fa~idws~v~---W~l~-g~pftPD~~ 90 (119)
T 3u52_E 19 NFHGMQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPD----SAKADFLNAE---WLLN-DEPFTPKAD 90 (119)
T ss_dssp GGTTCEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTT----GGGCCTTSSE---EEET-TEEECCCTT
T ss_pred hCCCCEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCc----cccCCcchhe---EEEC-CccCCCChh
Confidence 356666777765554333 889999999987655443 333332 3668885432 3433 55454 678
Q ss_pred chhhhcCCccCCEEEEE
Q 030498 133 SALQDCGVRNNSQVQFV 149 (176)
Q Consensus 133 ~~L~dyGIkngd~L~Fk 149 (176)
++|.+.||.-.|.|+|.
T Consensus 91 kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 91 ASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SBTTTTTCCTTEEEEEE
T ss_pred hhHHHcCCCchheEEEe
Confidence 99999999999999996
No 292
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.75 E-value=1.2e+02 Score=19.98 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=37.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.+.+..|--|+. =.+..+..+||+..
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~kg~afV~--f~~~~~a~~a~~~l 71 (99)
T 2cpj_A 20 VGNLPPDITEEEMRKLFE-KYGKAGEVFIHKDKGFGFIR--LETRTLAEIAKVEL 71 (99)
T ss_dssp EESCCTTCCHHHHHHHTS-TTCCCSEEEEETTTTEEEEE--CSSSHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHh-hcCCeEEEEEecCCCEEEEE--ECCHHHHHHHHHHh
Confidence 478999999999988775 68888888888765554422 24566777777654
No 293
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=27.68 E-value=78 Score=22.89 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=36.3
Q ss_pred Ee-cCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhcCCccCCEEEEEee
Q 030498 79 AV-MNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDCGVRNNSQVQFVPF 151 (176)
Q Consensus 79 ~V-~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dyGIkngd~L~Fk~~ 151 (176)
++ +..+||.|+=.+|++.+-..- ---.||++ .-.+.++++-. ++-+.|||.|..+.+
T Consensus 30 iL~~~GsTv~Dfa~~IH~di~~~f---------kyA~VwG~-saK~~~qrVgl------dh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 30 VLPYSRTTVEDFCMKIHKNLIKEF---------KYALVWGL-SVKHNPQKVGK------DHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEETTSCCHHHHHHHHCTTCTTTE---------EEEEEBST-TSSSSSEEECS------SCCCCSSEEECEEEC
T ss_pred EEecCCCCHHHHHHHHHHHHHhhc---------cEEEEecc-cccCCCEECCC------CcEecCCCEEEEEeC
Confidence 77 889999999999988763210 00135554 22234554432 456889998888765
No 294
>1qbe_A Bacteriophage Q beta capsid; coat protein, RNA binding, icosahedral virus; 3.50A {Enterobacteria phage qbeta} SCOP: d.85.1.1
Probab=27.62 E-value=16 Score=27.78 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=21.1
Q ss_pred ccccchhhHHHHHHHHHHhhhcCCcccC
Q 030498 17 GDYNSSTMKKARLHSTLTALLDDPILAD 44 (176)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~ll~Dp~L~d 44 (176)
-.|...| -++.++-+|++||.||+|-|
T Consensus 97 t~yst~e-eralvrtelaalladpl~~d 123 (132)
T 1qbe_A 97 TQYSTDE-ERAFVRTELAALLASPLLID 123 (132)
T ss_dssp CTTCCHH-HHHHHHHHHHHHHHSHHHHH
T ss_pred EecccHH-HHHHHHHHHHHHhcChHHhh
Confidence 3464444 49999999999999998854
No 295
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=27.30 E-value=1.1e+02 Score=20.54 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=37.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+... .|.+- ....=.+..+..+||...
T Consensus 31 V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 88 (110)
T 1oo0_B 31 VTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 88 (110)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 478999999999988775 6788777777644 23322 222235778888888754
No 296
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.27 E-value=81 Score=20.81 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=32.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+| .|.+... +|.+- ....=++..+.++||...
T Consensus 20 V~nLp~~~t~~~l~~~F~-~~g---~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 73 (101)
T 2fc9_A 20 LSNLSYSATEETLQEVFE-KAT---FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 73 (101)
T ss_dssp EESCCTTCCHHHHHHHCS-SCS---EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hCC---EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHh
Confidence 478999999999988765 355 2334333 33332 222336788888888754
No 297
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.12 E-value=93 Score=20.54 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=36.5
Q ss_pred ccCCCCCCCHHHHh----HhhhhccCCceEEEEEecCC-ceeEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVD----TLISLEMGSAMRISILKLDG-TSFAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~----~~Iale~G~Am~LtV~k~dG-~~l~V~~~ATV~DLKkAI~~~~ 97 (176)
...||.++|-++|. .+. -.+|.-..+.|..... +.+....=.+..+..+||...-
T Consensus 14 V~nL~~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 14 VSNIDYRLSRKELQQLLQEAF-ARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLH 73 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhC
Confidence 47899999999998 444 3788888888874422 2231112256778888887553
No 298
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.83 E-value=97 Score=21.54 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=34.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCC-----ceEEEEEecCCcee--EecCcccHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGS-----AMRISILKLDGTSF--AVMNSATVKDLKLAIK 94 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~-----Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~ 94 (176)
+..||.++|-+||..... .+|. .++|...+ +|.+- ....=+|..+.++||+
T Consensus 22 V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 22 LRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp EESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG
T ss_pred EeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh
Confidence 479999999999988875 3665 34444333 36543 2233367889999987
No 299
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.44 E-value=78 Score=21.36 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=32.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCc----eEEEEEecCCce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSA----MRISILKLDGTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~A----m~LtV~k~dG~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.- +.+.+. .|.+ +....=++..+..+||...
T Consensus 30 V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l 87 (115)
T 2cpx_A 30 LKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLV 87 (115)
T ss_dssp EECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHh
Confidence 478999999999987655 45654 444444 4443 3222335777888888753
No 300
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=26.40 E-value=1e+02 Score=22.26 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=34.4
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.. .+|.-..+.+.+. +|.+- ....=.+..+-.+|+...
T Consensus 119 v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 176 (198)
T 2yh0_A 119 IGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 176 (198)
T ss_dssp EECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 368999999999888776 5787777777765 44332 111223445566676643
No 301
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.29 E-value=1.2e+02 Score=21.22 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=39.8
Q ss_pred ccCCCC-CCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPK-KPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~-~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||. ++|-+||..+. -.+|.-..+.|.+..|.-|+- =++..+-..||+..-
T Consensus 20 V~nLp~~~~te~dL~~lF-~~fG~V~~v~i~~~kg~aFVe--f~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 20 IMDFQRGKNLRYQLLQLV-EPFGVISNHLILNKINEAFIE--MATTEDAQAAVDYYT 73 (102)
T ss_dssp EESCCCSSSHHHHHHTTT-GGGSCEEEEEECSSSSCEEEE--ESSHHHHHHHHHHHH
T ss_pred EeCCCCCcCCHHHHHHHH-HhcCCEEEEEEEcCCCEEEEE--ECCHHHHHHHHHHHc
Confidence 378999 99999988755 589999999998766665522 245667788887643
No 302
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=25.89 E-value=1.1e+02 Score=22.44 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=35.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCC-----ceEEEEEecCCcee--EecCcccHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGS-----AMRISILKLDGTSF--AVMNSATVKDLKLAIK 94 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~-----Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~ 94 (176)
+..||.++|-+||.....- +|. .++|...+. |.+- ....=+|..|.++||.
T Consensus 49 VgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 49 LRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp EESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh
Confidence 5899999999999887763 776 344444333 6654 3333468889999998
No 303
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=25.84 E-value=1.5e+02 Score=20.65 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=36.7
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.+ .+|.-..+.|.+. .|.+- ....=.+..+..+||...
T Consensus 47 V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 104 (139)
T 1u6f_A 47 VNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104 (139)
T ss_dssp EESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 478999999999988775 5788777777654 23332 222235778888888753
No 304
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=25.81 E-value=62 Score=21.32 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.4
Q ss_pred cCCcc--cCCCC-CCCHHHHhHhhhhccCCceEEEEEecCCc
Q 030498 38 DDPIL--ADVPK-KPTLSDVDTLISLEMGSAMRISILKLDGT 76 (176)
Q Consensus 38 ~Dp~L--~dlp~-~~Tl~ev~~~Iale~G~Am~LtV~k~dG~ 76 (176)
.|-++ ++.|- ..+.+|+..+|.-. |+.++|+|.+.+..
T Consensus 48 GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 48 EDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ 88 (91)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence 46666 35553 35899999999877 99999999986543
No 305
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=25.59 E-value=1.7e+02 Score=20.21 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=38.3
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-++|.... -.+|.-..+.+... +|.+- ....=.+..+-.+|+...-
T Consensus 92 v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 92 VGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp EESCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCCHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 36899999999999887 46888777777654 34432 2223357788888887553
No 306
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=25.12 E-value=1.5e+02 Score=19.44 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=37.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+..|-.|+ .=.+..+..+||...
T Consensus 32 V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~~~~g~afV--~f~~~~~A~~Ai~~l 83 (101)
T 2la4_A 32 IGNIPHFATEADLIPLFQ-NFGFILDFKHYPEKGCCFI--KYDTHEQAAVCIVAL 83 (101)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSCCSEEEEETTTTEEEE--ECSSHHHHHHHHHHH
T ss_pred EcCCCcccCHHHHHHHHH-hCCCEEEEEEecCCCEEEE--EECCHHHHHHHHHHh
Confidence 479999999999998775 6788888888755554442 224677778888743
No 307
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=24.85 E-value=1.2e+02 Score=22.77 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=33.2
Q ss_pred ccCCceEEEEEecCCcee--------EecCcccHHHHHHHHHHHhhhhhh
Q 030498 61 EMGSAMRISILKLDGTSF--------AVMNSATVKDLKLAIKKKVNDMEQ 102 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--------~V~~~ATV~DLKkAI~~~~~~~~~ 102 (176)
.+-.-+=|.|.+..++.+ -||.+.||.++...|.+...+.++
T Consensus 32 kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~ 81 (125)
T 3m95_A 32 KYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPE 81 (125)
T ss_dssp HCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTT
T ss_pred HCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCcc
Confidence 466667778877776544 789999999999999999876554
No 308
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.39 E-value=99 Score=20.08 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=34.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEE-EEEecCCc--eeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRI-SILKLDGT--SFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~L-tV~k~dG~--~l~V~~~ATV~DLKkAI~~~ 96 (176)
...||.++|-++|..+.+ .+|.-..+ .|...... -|+ .=.+..+..+||...
T Consensus 20 V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~~~afV--~f~~~~~a~~Ai~~l 74 (96)
T 2e44_A 20 IRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSETAVVNV--TYSSKDQARQALDKL 74 (96)
T ss_dssp EEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSSEEEEE--EESSHHHHHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCCCEEEE--EECCHHHHHHHHHHh
Confidence 468999999999988887 78887777 34443222 221 124667778888754
No 309
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.34 E-value=70 Score=21.61 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=35.3
Q ss_pred cccCCCCCCCHHHHhHhhhhccCCceE-EEEEe-cCCcee--EecCcccHHHHHHHHHH
Q 030498 41 ILADVPKKPTLSDVDTLISLEMGSAMR-ISILK-LDGTSF--AVMNSATVKDLKLAIKK 95 (176)
Q Consensus 41 ~L~dlp~~~Tl~ev~~~Iale~G~Am~-LtV~k-~dG~~l--~V~~~ATV~DLKkAI~~ 95 (176)
++..||.++|-+||..... .+|.-.. |.|.. .+|.+- ....=++..+..+||..
T Consensus 19 ~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 19 RLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp EEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 3479999999999987765 4665443 44433 244432 22233688899999986
No 310
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=24.29 E-value=1.9e+02 Score=21.72 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=39.0
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec--CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL--DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~--dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
..+||.++|-++|..+.. .+|.-..+.|.+. .|.+- ....=++..+..+||...
T Consensus 20 VgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~ 77 (213)
T 4f02_A 20 VGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77 (213)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHh
Confidence 479999999999988775 6888777777653 35443 222336788888898765
No 311
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=24.03 E-value=1.7e+02 Score=26.17 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=44.0
Q ss_pred eEEEEEecCCcee----EecCcccHHHHHHHHHHH--hhh-hhhcccCCccccccce---eeeeeeecCC-cccccCcch
Q 030498 66 MRISILKLDGTSF----AVMNSATVKDLKLAIKKK--VND-MEQSNLGHRHISWKHV---WANYCLSHQN-QKLLDENSA 134 (176)
Q Consensus 66 m~LtV~k~dG~~l----~V~~~ATV~DLKkAI~~~--~~~-~~~Rq~G~~~ISW~~V---W~~f~L~~~~-~kL~dD~~~ 134 (176)
++++|.. ..... .|+.+.|+.|.=++-++. |.+ ..+...|+=--|=-.+ =++||..+.+ .+.+ +.=
T Consensus 319 VtytV~~-~~~~~~~~Vtv~~gssll~vLk~A~e~~~F~F~~~es~~G~fItSInG~~~~~~~YW~l~~~p~~pl--~~G 395 (414)
T 2bb6_A 319 VLLKVSG-ISPSYRHSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGPFLTSVLGRKAGEREFWQVLRDPDTPL--QQG 395 (414)
T ss_dssp EEEEEES-SSSCEEEEEEEETTCCHHHHHHHHHHSSSCCEEEECCTTSCEEEEETTEECCTTEEEEEEETTTEEC--SSC
T ss_pred EEEEEee-CCCccceEEEecCCCCHHHHHHHHHhccCCceEeeecCCCceEEEECCCccCCCceEEEEECCCCcc--ccc
Confidence 5666764 22222 778999999866665554 221 1111112100000000 2577777766 2233 245
Q ss_pred hhhcCCccCCEEEEE
Q 030498 135 LQDCGVRNNSQVQFV 149 (176)
Q Consensus 135 L~dyGIkngd~L~Fk 149 (176)
..+|-++||+.+.|.
T Consensus 396 v~~y~~~~ge~I~f~ 410 (414)
T 2bb6_A 396 IADYRPKDGETIELR 410 (414)
T ss_dssp TTTCCCCTTCEEEEE
T ss_pred ccceecCCCCEEEEE
Confidence 679999999998885
No 312
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.82 E-value=1.6e+02 Score=19.28 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=32.9
Q ss_pred ccCCCCCCCHHHHhHhhhhcc--CCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEM--GSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~--G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+ |.-..+.+.+ |--|+ .=.+..+..+||...
T Consensus 20 V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~~--g~afV--~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 20 VRNLMLSTSEEMIEKEFN-NIKPGAVERVKKIR--DYAFV--HFSNREDAVEAMKAL 71 (99)
T ss_dssp EESCCTTCCHHHHHHHHH-TTSTTCEEEEEECS--SEEEE--EESSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCcceEEEEEeC--CeEEE--EeCCHHHHHHHHHHh
Confidence 478999999999988776 45 6666555542 33222 224677778888754
No 313
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=23.62 E-value=1.7e+02 Score=19.92 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=36.2
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecCCceeEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLDGTSFAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-+||..+.+ .+|.-..+.+. .|-.|+ .=.+..+-.+||...
T Consensus 36 V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--kg~afV--~f~~~~~A~~Ai~~l 85 (108)
T 2jvo_A 36 VRPFPLDVQESELNEIFG-PFGPMKEVKIL--NGFAFV--EFEEAESAAKAIEEV 85 (108)
T ss_dssp ECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--TTEEEE--ECSSHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHH-hcCCEEEEEEE--CCEEEE--EECCHHHHHHHHHHc
Confidence 478999999999988875 68888788777 344432 224677778888754
No 314
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=23.61 E-value=86 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=25.4
Q ss_pred ceEEEEEecCC-cee----EecCcccHHHHHHHHHHHhh
Q 030498 65 AMRISILKLDG-TSF----AVMNSATVKDLKLAIKKKVN 98 (176)
Q Consensus 65 Am~LtV~k~dG-~~l----~V~~~ATV~DLKkAI~~~~~ 98 (176)
..+|.|.-.+- ..+ .|+.++|..+|=.+|+..|.
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 34555555543 234 88999999999999999985
No 315
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=23.46 E-value=53 Score=24.03 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=20.6
Q ss_pred ccccccchhhHHHHHHHHHHhhhc-------------CCcccCCCCCCC
Q 030498 15 EVGDYNSSTMKKARLHSTLTALLD-------------DPILADVPKKPT 50 (176)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~l~~ll~-------------Dp~L~dlp~~~T 50 (176)
|.|.|+.++. .|.+|+. .|.|..+|.+|-
T Consensus 29 D~G~YPtt~q-------gL~aLv~~P~~~~~~~~w~~g~YL~~~P~DPW 70 (110)
T 2kep_A 29 DNFAYPSTQQ-------GLEALVKKPTGNPQPKNWNKDGYLKKLPVDPW 70 (110)
T ss_dssp HTSSCCCTTH-------HHHHHHSCCSSCCCSSCCCSTTTCCSCCCCST
T ss_pred HhCCCCCcHH-------HHHHHHhCcCCCcccccccCCCCccccCCCCC
Confidence 4677887654 6777776 567777887774
No 316
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=23.17 E-value=1.5e+02 Score=20.31 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=38.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-Cce--eEecCcccHHHHHHHHHHHh
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-GTS--FAVMNSATVKDLKLAIKKKV 97 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-G~~--l~V~~~ATV~DLKkAI~~~~ 97 (176)
+..||.++|-+||..+.. .+|.-..+.+.... |.+ +....=.+..+..+||...-
T Consensus 40 V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 97 (124)
T 2kt5_A 40 VSNLDFGVSDADIQELFA-EFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 97 (124)
T ss_dssp EESCCSSCCHHHHHHHHH-TTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcC
Confidence 479999999999988775 48887777776542 322 22223357788888888553
No 317
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=23.05 E-value=60 Score=23.63 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=44.2
Q ss_pred ccCCceEEEEEecCCcee--Ee-cCcccHHHHHHHHHHHhhhhhhcccCCcccc-cccee-----eeeeeecCCcccccC
Q 030498 61 EMGSAMRISILKLDGTSF--AV-MNSATVKDLKLAIKKKVNDMEQSNLGHRHIS-WKHVW-----ANYCLSHQNQKLLDE 131 (176)
Q Consensus 61 e~G~Am~LtV~k~dG~~l--~V-~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~IS-W~~VW-----~~f~L~~~~~kL~dD 131 (176)
+--..++|+|...+|..- .| +...|+.|.=++-. .+. ..+..-|+ +|+ =..++ +.||....+.+.+.
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~-~ve-~e~s~~G~-fITsI~G~~ad~~~~~yW~~~vng~~~~- 79 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESEN-LVD-GESGEYGL-FITTVDEETADDSKQQWWCITKGGEQVN- 79 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTT-CEE-EECCTTSC-EEEEETTEECCGGGTEEEEEEETTEECC-
T ss_pred cceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcC-ccc-cccccccc-eEEEEcCEecCCCCCCEEEEEECCEEhh-
Confidence 334568999999888765 44 45577877554444 121 11111121 000 00000 23344333333332
Q ss_pred cchhhhcCCccCCEEEEEe
Q 030498 132 NSALQDCGVRNNSQVQFVP 150 (176)
Q Consensus 132 ~~~L~dyGIkngd~L~Fk~ 150 (176)
.-..+|-|+|||.|.|.-
T Consensus 80 -~Ga~~~~v~dGD~i~~~~ 97 (101)
T 3u7z_A 80 -TSADQTPVSDGDAFELTL 97 (101)
T ss_dssp -SCGGGCBCCTTCEEEEEE
T ss_pred -hchhheEecCCCEEEEEE
Confidence 356789999999999864
No 318
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=22.64 E-value=1.4e+02 Score=21.53 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=34.4
Q ss_pred hhhccCCceEEEEEecCCcee--------EecCcccHHHHHHHHHHHhhhhhh
Q 030498 58 ISLEMGSAMRISILKLDGTSF--------AVMNSATVKDLKLAIKKKVNDMEQ 102 (176)
Q Consensus 58 Iale~G~Am~LtV~k~dG~~l--------~V~~~ATV~DLKkAI~~~~~~~~~ 102 (176)
|.-.+...+-|.|.+..++.+ .|+.+.||.++-..|.+...+.++
T Consensus 20 ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~ 72 (110)
T 2r2q_A 20 IRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPE 72 (110)
T ss_dssp HHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTT
T ss_pred HHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence 344566778888888865433 788999999999999999866543
No 319
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=22.60 E-value=1.1e+02 Score=20.37 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=29.0
Q ss_pred cCCcc--cCCCC-CCCHHHHhHhhhhccCCceEEEEEecCCce
Q 030498 38 DDPIL--ADVPK-KPTLSDVDTLISLEMGSAMRISILKLDGTS 77 (176)
Q Consensus 38 ~Dp~L--~dlp~-~~Tl~ev~~~Iale~G~Am~LtV~k~dG~~ 77 (176)
.|-++ ++.|- ..+.+++...|. ..|+.++|+|.+.+..+
T Consensus 55 GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~~ 96 (99)
T 3khf_A 55 GDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALENTE 96 (99)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCSSC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCCcc
Confidence 36655 35553 457899999888 78999999999876554
No 320
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=22.35 E-value=96 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=27.0
Q ss_pred eEEEEEecCCceeEecCcccHHHHHHHHHHHhhhhh
Q 030498 66 MRISILKLDGTSFAVMNSATVKDLKLAIKKKVNDME 101 (176)
Q Consensus 66 m~LtV~k~dG~~l~V~~~ATV~DLKkAI~~~~~~~~ 101 (176)
|++++.+.++....+..+.+-.+++.++.+.+..+.
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~ 36 (109)
T 2nsc_A 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLN 36 (109)
T ss_dssp CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHh
Confidence 788888888877655556677888888888876543
No 321
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.26 E-value=97 Score=21.20 Aligned_cols=53 Identities=8% Similarity=0.125 Sum_probs=35.5
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC-----Cce--eEecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD-----GTS--FAVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d-----G~~--l~V~~~ATV~DLKkAI~~~ 96 (176)
...||.++|-++|..+.+ .+|.-. +.+.... |.+ +....=++..+..+||+..
T Consensus 13 VgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 13 VGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp EECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred EcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 478999999999988776 677665 5444332 222 2222336778888998764
No 322
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=22.17 E-value=1.1e+02 Score=23.15 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=40.6
Q ss_pred CCHHHHhHhh------hhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHHhh
Q 030498 49 PTLSDVDTLI------SLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVN 98 (176)
Q Consensus 49 ~Tl~ev~~~I------ale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~ 98 (176)
.|+++...++ |.+.|.+|.|.|+...|..+ .-+++|+..-..+|+.+.++
T Consensus 12 lt~~~A~~l~~aa~~~A~~~g~~v~IaVvD~~G~ll~~~rmdga~~~s~~ia~~KA~T 69 (145)
T 2a2l_A 12 ITLAAAQQMAAAVEKKATEINVAVVFSVVDRGGNTLLIQRMDEAFVSSCDISLNKAWS 69 (145)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTCCCEEEEEETTSCEEEEEECTTSCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcchHHHHHHHHHH
Confidence 4666666554 56789999999999999988 55788999999999998875
No 323
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.94 E-value=53 Score=25.18 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=46.3
Q ss_pred CceEEEEEe---cCC------cee--EecCcccHHHHHHHHHHHhh---hhhhcc-cCCccccccceeeeeeeecC-Cc-
Q 030498 64 SAMRISILK---LDG------TSF--AVMNSATVKDLKLAIKKKVN---DMEQSN-LGHRHISWKHVWANYCLSHQ-NQ- 126 (176)
Q Consensus 64 ~Am~LtV~k---~dG------~~l--~V~~~ATV~DLKkAI~~~~~---~~~~Rq-~G~~~ISW~~VW~~f~L~~~-~~- 126 (176)
.+++|.|.. .++ +.+ -|..--||.+.|.-|-..+- -+|.++ ...-.+-|+.==....|.-. ..
T Consensus 18 ~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 18 GTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp CEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcc
Confidence 457888886 332 234 45566899999988876653 222221 11222334321111122211 11
Q ss_pred ccccC----cchhhhcCCccCCEEEEEe
Q 030498 127 KLLDE----NSALQDCGVRNNSQVQFVP 150 (176)
Q Consensus 127 kL~dD----~~~L~dyGIkngd~L~Fk~ 150 (176)
....+ -.+|..|+|.||++|-+.+
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEee
Confidence 11112 2578899999999987764
No 324
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=21.74 E-value=2e+02 Score=22.50 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=39.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEec-CCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKL-DGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~-dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||..+|-++|....+ .+|.-..+.|... +|.+- ....=++..+-.+||...
T Consensus 101 v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 101 VKNLSPVVSNELLEQAFS-QFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 368999999999998885 6898877777655 44332 223346788888888875
No 325
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.24 E-value=59 Score=29.55 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=44.1
Q ss_pred EecCcccHHHHHHHHHHHhhhhhhcccCCccccccceeeeeeeecCCcccccCcchhhhc--CCccCCEEEEEeeee
Q 030498 79 AVMNSATVKDLKLAIKKKVNDMEQSNLGHRHISWKHVWANYCLSHQNQKLLDENSALQDC--GVRNNSQVQFVPFVL 153 (176)
Q Consensus 79 ~V~~~ATV~DLKkAI~~~~~~~~~Rq~G~~~ISW~~VW~~f~L~~~~~kL~dD~~~L~dy--GIkngd~L~Fk~~l~ 153 (176)
.|+.+++|.+|-..|.+.+..-+...- -+|.-+.-+ .-++|.+.+.++.+. +|.+||.|.|-+...
T Consensus 152 ~v~~~~kv~~l~~~i~~~~g~p~dt~l--------~lyEEi~~~-~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~ 219 (530)
T 2ylm_A 152 YTPISCKIRDLLPVMCDRAGFIQDTSL--------ILYEEVKPN-LTERIQDYDVSLDKALDELMDGDIIVFQKDDP 219 (530)
T ss_dssp EEETTCBGGGTHHHHHHHHTCCTTCCE--------EEEEEEETT-EEEECCCSSSBHHHHSTTCCTTEEEEEEECCG
T ss_pred EECCCCCHHHHHHHHHHHcCCCCCCce--------EEEEecCCC-ceeEcccccccHHHHHhcccCCCEEEEEecCC
Confidence 667889999999999998654222111 122222211 123344467799999 999999999998765
No 326
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=21.19 E-value=1.5e+02 Score=21.69 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=34.4
Q ss_pred hhhccCCceEEEEEecCCcee--------EecCcccHHHHHHHHHHHhhhhhh
Q 030498 58 ISLEMGSAMRISILKLDGTSF--------AVMNSATVKDLKLAIKKKVNDMEQ 102 (176)
Q Consensus 58 Iale~G~Am~LtV~k~dG~~l--------~V~~~ATV~DLKkAI~~~~~~~~~ 102 (176)
|.-.+..-+-|.|.+..++.+ -|+.+.||.++-..|.+...+.++
T Consensus 21 ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~ 73 (117)
T 1eo6_A 21 IRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSE 73 (117)
T ss_dssp HHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTT
T ss_pred HHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCC
Confidence 344566778888888766433 788999999999999999866544
No 327
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=21.02 E-value=72 Score=21.28 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=35.1
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC---Ccee--EecCcccHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD---GTSF--AVMNSATVKDLKLAI 93 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d---G~~l--~V~~~ATV~DLKkAI 93 (176)
+..||.++|-++|..+.+ .+| -..+.+.+.. |.+- ....=.+..+.++||
T Consensus 24 V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 24 LGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH
Confidence 479999999999988776 578 7777776542 3332 222235788888998
No 328
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=20.99 E-value=1.9e+02 Score=19.05 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=37.9
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEecC--Ccee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILKLD--GTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k~d--G~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
+..||.++|-++|..+.+ .+|.-..+.+.... |.+- ....=++..+..+||...
T Consensus 28 V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 85 (106)
T 1p27_B 28 VTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 85 (106)
T ss_dssp EECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 479999999999988775 57887777776542 3332 222336788888888754
No 329
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=20.72 E-value=1.6e+02 Score=22.86 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=37.4
Q ss_pred ccCCCCCCCHHHHhH---hhhhccCCceEEEEEecCCcee--EecCcccHHHHHHHHHHH
Q 030498 42 LADVPKKPTLSDVDT---LISLEMGSAMRISILKLDGTSF--AVMNSATVKDLKLAIKKK 96 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~---~Iale~G~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~ 96 (176)
...||.++|-++|.. .+--.+|.-..|.+.+ +|.+- ....=.+..+-.+||...
T Consensus 14 V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l 72 (282)
T 3pgw_A 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSM 72 (282)
T ss_pred EeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHh
Confidence 478999999999864 3445788888888776 55432 222336778888888654
No 330
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.60 E-value=61 Score=21.40 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=20.3
Q ss_pred EecCcccHHHHHHHHHHHhh-hhhhcc
Q 030498 79 AVMNSATVKDLKLAIKKKVN-DMEQSN 104 (176)
Q Consensus 79 ~V~~~ATV~DLKkAI~~~~~-~~~~Rq 104 (176)
-|+++||..++|+|..+... ..|.+.
T Consensus 16 gv~~~as~~eIk~ayr~l~~~~HPDk~ 42 (82)
T 2ej7_A 16 DVPRQASSEAIKKAYRKLALKWHPDKN 42 (82)
T ss_dssp TCCTTCCHHHHHHHHHHHHTTSCTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 56789999999999998865 355543
No 331
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.41 E-value=50 Score=21.39 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=22.8
Q ss_pred ccCCCCCCCHHHHhHhhhhccCCceEEEEEe
Q 030498 42 LADVPKKPTLSDVDTLISLEMGSAMRISILK 72 (176)
Q Consensus 42 L~dlp~~~Tl~ev~~~Iale~G~Am~LtV~k 72 (176)
+..||.++|-++|..+.+ .+|.-..+.+.+
T Consensus 10 V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~ 39 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFS-QYGDVMDVFIPK 39 (88)
T ss_dssp EESCCSSSCHHHHHHHST-TTSCCCEEECCS
T ss_pred EeCCCCCCCHHHHHHHHH-HcCCeeEEEEec
Confidence 368899999988887775 678777776654
No 332
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=20.28 E-value=1.9e+02 Score=21.46 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=33.9
Q ss_pred hhccCCceEEEEEecCCcee--------EecCcccHHHHHHHHHHHhhhhhh
Q 030498 59 SLEMGSAMRISILKLDGTSF--------AVMNSATVKDLKLAIKKKVNDMEQ 102 (176)
Q Consensus 59 ale~G~Am~LtV~k~dG~~l--------~V~~~ATV~DLKkAI~~~~~~~~~ 102 (176)
--.+-.-+=|.|.+..++.+ -||.+.||.++...|.+...+.++
T Consensus 25 r~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~ 76 (119)
T 3h9d_A 25 RERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAE 76 (119)
T ss_dssp HHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTT
T ss_pred HHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCcc
Confidence 34556667778877776544 789999999999999999876554
No 333
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=20.18 E-value=1.8e+02 Score=20.78 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=29.7
Q ss_pred CceEEEEEecCCcee--EecCcccHHHHHHHHHHHhhh
Q 030498 64 SAMRISILKLDGTSF--AVMNSATVKDLKLAIKKKVND 99 (176)
Q Consensus 64 ~Am~LtV~k~dG~~l--~V~~~ATV~DLKkAI~~~~~~ 99 (176)
++|+|.+--.|. .| -||.+.+..||+.-|......
T Consensus 11 ~~~KVK~yy~DD-IiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKFYYKDD-IFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEECBTTC-CEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEEEecCc-EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 679999988875 45 889999999999999988753
No 334
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=20.03 E-value=67 Score=20.98 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=20.2
Q ss_pred EecCcccHHHHHHHHHHHhh-hhhhcc
Q 030498 79 AVMNSATVKDLKLAIKKKVN-DMEQSN 104 (176)
Q Consensus 79 ~V~~~ATV~DLKkAI~~~~~-~~~~Rq 104 (176)
-|+++||..++|+|..+... ..|.+.
T Consensus 10 gv~~~as~~~Ik~ayr~l~~~~HPD~~ 36 (77)
T 1hdj_A 10 GLARGASDEEIKRAYRRQALRYHPDKN 36 (77)
T ss_dssp TCCTTCCHHHHHHHHHHHHHTTCTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 56789999999999998865 355543
Done!