BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030500
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O93744|AAT_PYRKO Aspartate aminotransferase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=aspC PE=3 SV=1
Length = 364
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 41 DQTSRREII------LRSSEVA--VIGAIFNLSGKKPEYLGVQKNQQALALCPATKNCIS 92
D RREII LR E G I L + E+ GV ++ +A P K I+
Sbjct: 26 DIPVRREIIEEAVESLRRGETGYTSTGGIRELRERIAEFEGVSADEVIVA--PGAKILIA 83
Query: 93 TA-ENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVH 151
+ + +P WN + REV +VIK+T +R+ PR+ E K D +
Sbjct: 84 AEIASAKKVAVVSPRWNAYSLIARQFWREV------EVIKTTLDERWIPRVEEIKADLII 137
Query: 152 VEY 154
+ Y
Sbjct: 138 INY 140
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2
Length = 617
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 1 MALMASSNGYCYYNYKKKYNKRYNCST-------VPRITLSQSQEPRDQTSRREII---- 49
+A +AS C++ K K N C+T VPRIT + PRDQ R E +
Sbjct: 5 LAKLASPAYQCFHALKIKKNYLPLCATRWSSTCKVPRITTHYTIYPRDQDKRWEGVNMER 64
Query: 50 -LRSSEVAVIGA 60
++V ++GA
Sbjct: 65 FAEEADVVIVGA 76
>sp|B1GZ76|RPOC_UNCTG DNA-directed RNA polymerase subunit beta' OS=Uncultured termite group
1 bacterium phylotype Rs-D17 GN=rpoC PE=3 SV=1
Length = 1593
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 125 ELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPV 158
++ +VI DR +PR+V KKDD VEY PV
Sbjct: 1278 QIERVIIEHSSDRRSPRIVVKKDDGSVVEYPLPV 1311
>sp|P43585|VTC2_YEAST Vacuolar transporter chaperone 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VTC2 PE=1 SV=1
Length = 828
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 64 LSGKKPEYLGVQKNQQALALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAM 123
L+G+ P+ +GV ++ + L P K ++ +N + A W N ++ +R +++
Sbjct: 645 LAGRDPKLMGVDSEEEEIELPPGVKKPLNLLKNAGPVNVEAKVWLAN---ERTFNRWLSV 701
Query: 124 EELLQVI 130
LL V+
Sbjct: 702 TSLLSVL 708
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,063,798
Number of Sequences: 539616
Number of extensions: 2361655
Number of successful extensions: 5723
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5722
Number of HSP's gapped (non-prelim): 7
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)