Query 030500
Match_columns 176
No_of_seqs 130 out of 210
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh5_A DAPX protein, BAMC; lip 36.8 53 0.0018 24.5 4.8 42 105-157 15-58 (127)
2 2dsy_A Hypothetical protein TT 24.1 75 0.0026 21.9 3.5 30 81-132 30-59 (87)
3 2gvk_A Heme peroxidase; PC0426 20.1 33 0.0011 29.2 1.1 42 119-164 118-159 (317)
4 3eud_A Protein SHQ1; CS domain 19.3 1.4E+02 0.0047 22.5 4.3 30 141-170 20-50 (115)
5 1i82_A Xylanase A, endo-1,4-be 18.0 1.1E+02 0.0037 22.9 3.6 25 149-173 54-85 (189)
6 3kwr_A Putative RNA-binding pr 17.9 80 0.0027 22.6 2.6 30 81-132 23-52 (97)
7 2iiz_A Melanin biosynthesis pr 17.9 40 0.0014 28.8 1.1 42 119-164 112-153 (312)
8 1wi9_A Protein C20ORF116 homol 16.5 1.7E+02 0.0058 20.3 3.9 31 118-152 34-64 (72)
9 4dj3_A Period circadian protei 15.8 1.8E+02 0.0062 24.4 4.7 52 119-170 218-274 (317)
10 1vp7_A Exodeoxyribonuclease VI 13.8 1.1E+02 0.0038 22.3 2.5 19 117-135 30-48 (100)
No 1
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=36.80 E-value=53 Score=24.52 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=33.8
Q ss_pred CCeeccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCcEEEEe--cCCEEEEEEEcC
Q 030500 105 PPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEK--KDDYVHVEYESP 157 (176)
Q Consensus 105 ~Pw~y~g~~~~~~s~e~A~~~L~~vl~~~~~~~f~~~IVe~--~~~YL~aef~S~ 157 (176)
+.|...++ .+.||++|-.+|..++ .+|.++ +.+..+|.|..+
T Consensus 15 p~l~l~~~------fdraW~rvg~ALdr~G-----f~V~Drdrs~G~y~V~Y~~~ 58 (127)
T 2yh5_A 15 PMLVVRGP------FNVVWQRLPAALEKVG-----MKVTDSTRSQGNMAVTYKPL 58 (127)
T ss_dssp EEEEEESC------HHHHHHHHHHHHHHTT-----EEEEEEEGGGTEEEEEECCC
T ss_pred EEEEEcCC------HHHHHHHHHHHHHhCC-----CeEEeeeccCeEEEEEeCCC
Confidence 45666665 8899999999999997 788765 477999999855
No 2
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=24.06 E-value=75 Score=21.87 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=21.9
Q ss_pred ccCCCCCCCeeeeccccCCCCcccCCeeccCCCCCCCCHHHHHHHHHHHHHh
Q 030500 81 LALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKS 132 (176)
Q Consensus 81 La~CP~sPNCVSSqa~~~D~~h~I~Pw~y~g~~~~~~s~e~A~~~L~~vl~~ 132 (176)
..-||+-|.|++.-+ |.++|++.++++|+.
T Consensus 30 ~~~~Pdlpgc~t~G~----------------------T~eEA~~~a~eAl~~ 59 (87)
T 2dsy_A 30 YGEIPDLPGVWATGK----------------------SLKECEANLQAALED 59 (87)
T ss_dssp EEECTTSTTCEEEES----------------------SHHHHHHHHHHHHHH
T ss_pred EEEECCCCCeeEeeC----------------------CHHHHHHHHHHHHHH
Confidence 778999999985532 367787777776654
No 3
>2gvk_A Heme peroxidase; PC04261D, structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.60A {Bacteroides thetaiotaomicron} SCOP: d.58.4.14
Probab=20.10 E-value=33 Score=29.20 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEecCCEEEEEEEcCCCCcccc
Q 030500 119 REVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGVGLA 164 (176)
Q Consensus 119 ~e~A~~~L~~vl~~~~~~~f~~~IVe~~~~YL~aef~S~ifGFVDD 164 (176)
.+.++..+.+++..+.+ .++|+.+..+|.+.+=+ .+|||+|=
T Consensus 118 ~~~~~~a~r~l~~~~~~---~~~v~~~~~GF~~~~~R-~l~GF~DG 159 (317)
T 2gvk_A 118 MGLCFEFASILDEKLKG---AVVSVDETHGFRYMDGK-AIIGFVDG 159 (317)
T ss_dssp HHHHHHHHHHHHHHTTT---TEEEEEEEEEECBTTTB-CTTSSBCC
T ss_pred HHHHHHHHHHHHHHcCC---ceEEEEEEeCCccCCcc-cccCcccc
Confidence 77888888888888875 47888877777654211 36899973
No 4
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=19.31 E-value=1.4e+02 Score=22.50 Aligned_cols=30 Identities=3% Similarity=0.195 Sum_probs=23.0
Q ss_pred EEEEecCCEEEEEEEcCCCCc-ccceEEEee
Q 030500 141 RLVEKKDDYVHVEYESPVLGV-GLAHHTFVQ 170 (176)
Q Consensus 141 ~IVe~~~~YL~aef~S~ifGF-VDDVEF~~d 170 (176)
=-++|++++|.+.-+-+--+| +-|+|++++
T Consensus 20 F~itQDdefv~I~I~~p~ir~~a~~~ei~vd 50 (115)
T 3eud_A 20 FSITQDEEFIFLKIFISNIRFSAVGLEIIIQ 50 (115)
T ss_dssp EEEEECSSEEEEEEECCSCCCCSSSCEEEEE
T ss_pred EEEEECCCEEEEEEEcCceecccCccEEEEe
Confidence 456789999999999776676 467787774
No 5
>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex, hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP: b.1.9.2 PDB: 1i8a_A* 1i8u_A
Probab=17.96 E-value=1.1e+02 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=16.2
Q ss_pred EEEEEEEcCCCCc-------ccceEEEeeecc
Q 030500 149 YVHVEYESPVLGV-------GLAHHTFVQLFF 173 (176)
Q Consensus 149 YL~aef~S~ifGF-------VDDVEF~~d~~~ 173 (176)
||+++++-+.... -|-|||++|.+-
T Consensus 54 Yv~~~v~D~~~~~~~~~~~~~D~veifid~~~ 85 (189)
T 1i82_A 54 YVLAIVKDPVLNKDNSNPWEQDSVEIFIDENN 85 (189)
T ss_dssp EEEEEEECSSCCCCSSSGGGSSEEEEEEETTC
T ss_pred EEEEEEECCCcccCCCCCccCCeEEEEECCCC
Confidence 6667777654331 244999998763
No 6
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=17.87 E-value=80 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=22.4
Q ss_pred ccCCCCCCCeeeeccccCCCCcccCCeeccCCCCCCCCHHHHHHHHHHHHHh
Q 030500 81 LALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKS 132 (176)
Q Consensus 81 La~CP~sPNCVSSqa~~~D~~h~I~Pw~y~g~~~~~~s~e~A~~~L~~vl~~ 132 (176)
..-||+-|.|++.-+ |.++|++..+++|+.
T Consensus 23 ~v~fPDlPGc~T~Gd----------------------T~eEAl~nA~EAL~~ 52 (97)
T 3kwr_A 23 DVRFPDVPAAQTFGA----------------------SVQVAADNAANALAI 52 (97)
T ss_dssp EEECTTCGGGCEEES----------------------SHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcEEecC----------------------CHHHHHHHHHHHHHH
Confidence 678999999986543 367788777777765
No 7
>2iiz_A Melanin biosynthesis protein TYRA, putative; NP_716371.1, putative melanin biosynthesis protein TYRA, STR genomics, PSI-2; HET: MSE HEM; 2.30A {Shewanella oneidensis} SCOP: d.58.4.14 PDB: 2hag_A*
Probab=17.86 E-value=40 Score=28.79 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEecCCEEEEEEEcCCCCcccc
Q 030500 119 REVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESPVLGVGLA 164 (176)
Q Consensus 119 ~e~A~~~L~~vl~~~~~~~f~~~IVe~~~~YL~aef~S~ifGFVDD 164 (176)
.+.++..+.+++..+.+ .++|+.+..++.+.+= -.+|||+|=
T Consensus 112 ~~~~~~a~r~l~~~~~~---~~~v~~~~~Gf~~~~~-R~l~GF~DG 153 (312)
T 2iiz_A 112 YDILHLVANEISQMFED---LVELVEEERGFRFMDS-RDLTGFVDG 153 (312)
T ss_dssp HHHHHHHHHHHHHHTTT---SEEEEEEEEEECBTTT-BCTTSSBCC
T ss_pred HHHHHHHHHHHHHHcCC---ceEEEEEEeCCCCCCC-ccccCcccc
Confidence 77888888888888875 4788887777765421 136899983
No 8
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=16.51 E-value=1.7e+02 Score=20.29 Aligned_cols=31 Identities=3% Similarity=0.312 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCcEEEEecCCEEEE
Q 030500 118 SREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHV 152 (176)
Q Consensus 118 s~e~A~~~L~~vl~~~~~~~f~~~IVe~~~~YL~a 152 (176)
+.+++.++|.+..+.-. -+=|++..+.|||+
T Consensus 34 ~t~~~i~RI~~Le~~g~----ltGViDDRGKfIyI 64 (72)
T 1wi9_A 34 RTQDAINRIQDLLTEGT----LTGVIDDRGKFIYI 64 (72)
T ss_dssp CHHHHHHHHHHHHHHSS----SCEEECTTCCEEEC
T ss_pred ChHHHHHHHHHHHHCCC----eEEEEeCCCCEEEe
Confidence 37888988887766643 25677888999986
No 9
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=15.78 E-value=1.8e+02 Score=24.39 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCC---CCCCcEEEEecCCEEEEEEEcCCCC--cccceEEEee
Q 030500 119 REVAMEELLQVIKSTKP---DRFTPRLVEKKDDYVHVEYESPVLG--VGLAHHTFVQ 170 (176)
Q Consensus 119 ~e~A~~~L~~vl~~~~~---~~f~~~IVe~~~~YL~aef~S~ifG--FVDDVEF~~d 170 (176)
.+...+.+.++++.-+. ....-++..++++|++++-+...+. .-..+||.+-
T Consensus 218 ~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwvet~~~~~~np~s~~~e~II~ 274 (317)
T 4dj3_A 218 RPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDSSWSSFVNPWSRKVSFIIG 274 (317)
T ss_dssp TTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEEEEEEEEECSSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEEEEEEEEECCCCCcccEEEE
Confidence 34555666666664321 1223578889999999998766543 2456888774
No 10
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=13.77 E-value=1.1e+02 Score=22.34 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHhcCC
Q 030500 117 VSREVAMEELLQVIKSTKP 135 (176)
Q Consensus 117 ~s~e~A~~~L~~vl~~~~~ 135 (176)
.+.|+|+++|.++|..+..
T Consensus 30 ~sFEeal~eLEeIV~~LE~ 48 (100)
T 1vp7_A 30 QDFETALAELESLVSAMEN 48 (100)
T ss_dssp CSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 3578999999999999864
Done!