Query 030500
Match_columns 176
No_of_seqs 130 out of 210
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 23:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030500.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030500hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dsya1 d.304.1.2 (A:3-82) Hyp 33.7 20 0.0014 23.2 3.6 30 81-132 28-57 (80)
2 d1vp7a_ a.7.13.1 (A:) Exonucle 26.6 20 0.0014 22.8 2.5 20 116-135 5-24 (68)
3 d1xhja_ d.52.8.1 (A:) Nitrogen 24.8 54 0.004 21.5 4.7 36 119-157 12-47 (88)
4 d2fgca1 d.58.18.6 (A:105-187) 22.3 69 0.005 20.5 4.8 29 124-157 23-51 (83)
5 d1dqaa1 d.58.20.1 (A:587-703) 21.2 87 0.0064 21.5 5.4 33 120-155 26-62 (117)
6 d2pc6a1 d.58.18.6 (A:78-163) A 20.8 97 0.0071 19.7 5.3 31 122-157 20-50 (86)
7 d1ul7a_ d.129.6.1 (A:) Map/mic 19.3 56 0.0041 21.7 3.9 38 105-150 9-46 (102)
8 d1oz2a1 b.34.9.3 (A:204-313) L 17.8 41 0.003 22.6 2.9 27 140-170 55-81 (110)
9 d1wi9a_ a.4.5.47 (A:) Hypothet 17.0 61 0.0044 21.0 3.4 35 118-156 34-68 (72)
10 d1oi1a2 b.34.9.3 (A:140-243) S 16.5 43 0.0031 22.4 2.7 27 140-170 53-79 (104)
No 1
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=33.69 E-value=20 Score=23.20 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=22.5
Q ss_pred ccCCCCCCCeeeeccccCCCCcccCCeeccCCCCCCCCHHHHHHHHHHHHHh
Q 030500 81 LALCPATKNCISTAENISDLTHYAPPWNYNRGRKKPVSREVAMEELLQVIKS 132 (176)
Q Consensus 81 La~CP~sPNCVSSqa~~~D~~h~I~Pw~y~g~~~~~~s~e~A~~~L~~vl~~ 132 (176)
..-||+-|+|++.-+ |.++|++.++++++.
T Consensus 28 ~~~~PDlpgc~t~Gd----------------------T~eEA~~~a~eAl~~ 57 (80)
T d2dsya1 28 YGEIPDLPGVWATGK----------------------SLKECEANLQAALED 57 (80)
T ss_dssp EEECTTSTTCEEEES----------------------SHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcEEecCC----------------------CHHHHHHHHHHHHHH
Confidence 688999999987643 367777777776654
No 2
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=26.62 E-value=20 Score=22.79 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHhcCC
Q 030500 116 PVSREVAMEELLQVIKSTKP 135 (176)
Q Consensus 116 ~~s~e~A~~~L~~vl~~~~~ 135 (176)
|.|.|++|++|.++|..+..
T Consensus 5 p~sfEe~l~~LE~IV~~LE~ 24 (68)
T d1vp7a_ 5 PQDFETALAELESLVSAMEN 24 (68)
T ss_dssp CCSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 45689999999999999864
No 3
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=24.85 E-value=54 Score=21.47 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEecCCEEEEEEEcC
Q 030500 119 REVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESP 157 (176)
Q Consensus 119 ~e~A~~~L~~vl~~~~~~~f~~~IVe~~~~YL~aef~S~ 157 (176)
.+++++++.-.|+.-+| ..++++-+++.+++.|+..
T Consensus 12 I~~vLe~IRP~l~~dGG---dvelv~v~~g~V~v~l~Ga 47 (88)
T d1xhja_ 12 VAEVIERLRPFLLRDGG---DCTLVDVEDGIVKLQLHGA 47 (88)
T ss_dssp HHHHHHHHHHHHHHHSC---EEEEEECCSSEEEEEEESS
T ss_pred HHHHHHHhhHHHHhCCC---cEEEEeccCCEEEEEecCC
Confidence 45566777777777776 5899999999999999764
No 4
>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=22.25 E-value=69 Score=20.45 Aligned_cols=29 Identities=10% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCEEEEEEEcC
Q 030500 124 EELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESP 157 (176)
Q Consensus 124 ~~L~~vl~~~~~~~f~~~IVe~~~~YL~aef~S~ 157 (176)
.++.++++... ++|++.+++|+-.|++..
T Consensus 23 ~~i~~~~~~f~-----a~ivd~~~~~~iie~tg~ 51 (83)
T d2fgca1 23 QEIFQLVEIFR-----GKIIDVSREGAIIEITGA 51 (83)
T ss_dssp HHHHHHHHHTT-----CEEEEECSSEEEEEEEEC
T ss_pred HHHHHHHHHcC-----CEEEEcCCCeEEEEEeCC
Confidence 45777777776 899999999999999853
No 5
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24 E-value=87 Score=21.54 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEe----cCCEEEEEEE
Q 030500 120 EVAMEELLQVIKSTKPDRFTPRLVEK----KDDYVHVEYE 155 (176)
Q Consensus 120 e~A~~~L~~vl~~~~~~~f~~~IVe~----~~~YL~aef~ 155 (176)
.+.+++|+++.+++.+ .+++.+- .+++||..|.
T Consensus 26 ~e~~~~ik~~~esTSr---~~rL~~i~~~i~G~~v~lrF~ 62 (117)
T d1dqaa1 26 SEGFAVIKEAFDSTSR---FARLQKLHTSIAGRNLYIRFQ 62 (117)
T ss_dssp HHHHHHHHHHHHTTCS---SEEEEEEEEEEETTEEEEEEE
T ss_pred hhhHHHHHHHHHccCc---cEEecccEEEEECCEEEEEEE
Confidence 3568899999999997 5787764 3665555443
No 6
>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=20.83 E-value=97 Score=19.72 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEecCCEEEEEEEcC
Q 030500 122 AMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYESP 157 (176)
Q Consensus 122 A~~~L~~vl~~~~~~~f~~~IVe~~~~YL~aef~S~ 157 (176)
...++.++++... ++|++.+++++-.|++..
T Consensus 20 ~~~~i~~i~~~f~-----a~ivd~~~~~~iie~tG~ 50 (86)
T d2pc6a1 20 DREEMKRLADIFR-----GNIIDVTNELYTIELTGT 50 (86)
T ss_dssp HHHHHHHHHHHTT-----CEEEEEETTEEEEEEEEC
T ss_pred hHHHHHHHHHHcC-----cEEEEcCCCeEEEEEeCC
Confidence 4678888888876 899999999999999854
No 7
>d1ul7a_ d.129.6.1 (A:) Map/microtubule affinity-regulating kinase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.25 E-value=56 Score=21.75 Aligned_cols=38 Identities=13% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCeeccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCcEEEEecCCEE
Q 030500 105 PPWNYNRGRKKPVSREVAMEELLQVIKSTKPDRFTPRLVEKKDDYV 150 (176)
Q Consensus 105 ~Pw~y~g~~~~~~s~e~A~~~L~~vl~~~~~~~f~~~IVe~~~~YL 150 (176)
-+|...... ..++++-|.+|++++..+. ... ++.++|.
T Consensus 9 f~wsv~tTS--~~~P~eIm~eI~rvL~~lg-----v~~-~~~g~y~ 46 (102)
T d1ul7a_ 9 FTWSMKTTS--SMDPSDMMREIRKVLGANN-----CDY-EQRERFL 46 (102)
T ss_dssp CCCCCCCCB--CSCHHHHHHHHHHHHHHTT-----CEE-EECSTTC
T ss_pred eeeeeecCc--CCCHHHHHHHHHHHHHHcC-----cEE-EEcCCEE
Confidence 456555322 1258999999999999996 555 4455553
No 8
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.83 E-value=41 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=21.8
Q ss_pred cEEEEecCCEEEEEEEcCCCCcccceEEEee
Q 030500 140 PRLVEKKDDYVHVEYESPVLGVGLAHHTFVQ 170 (176)
Q Consensus 140 ~~IVe~~~~YL~aef~S~ifGFVDDVEF~~d 170 (176)
++|++..++||++.|. |+-++-.|+++
T Consensus 55 AtV~~v~g~~l~v~~d----g~~~~~dfw~~ 81 (110)
T d1oz2a1 55 LTVAEVCGYRLRLHFD----GYSECHDFWVN 81 (110)
T ss_dssp EEEEEEETTEEEEEET----TSCGGGCEEEE
T ss_pred EEEEEEECCEEEEEEC----CCCCCCCEEEE
Confidence 7889989999999986 66666677765
No 9
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.95 E-value=61 Score=20.99 Aligned_cols=35 Identities=3% Similarity=0.252 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCcEEEEecCCEEEEEEEc
Q 030500 118 SREVAMEELLQVIKSTKPDRFTPRLVEKKDDYVHVEYES 156 (176)
Q Consensus 118 s~e~A~~~L~~vl~~~~~~~f~~~IVe~~~~YL~aef~S 156 (176)
..++++++|.+..+. ++ -+=|++..+.|||+.=+.
T Consensus 34 ktqd~i~RIq~Le~~-g~---ltGViDDRGKfIyIS~s~ 68 (72)
T d1wi9a_ 34 RTQDAINRIQDLLTE-GT---LTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp CHHHHHHHHHHHHHH-SS---SCEEECTTCCEEECCCSS
T ss_pred cHHHHHHHHHHHHHC-CC---eeeEEcCCCCEEEEcCCC
Confidence 378899998776665 33 366888899999975443
No 10
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.54 E-value=43 Score=22.36 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=21.6
Q ss_pred cEEEEecCCEEEEEEEcCCCCcccceEEEee
Q 030500 140 PRLVEKKDDYVHVEYESPVLGVGLAHHTFVQ 170 (176)
Q Consensus 140 ~~IVe~~~~YL~aef~S~ifGFVDDVEF~~d 170 (176)
++|++..++||++.|. |+-++-+|+++
T Consensus 53 AtV~~v~g~~l~v~~d----g~~~~~dfw~~ 79 (104)
T d1oi1a2 53 ATIGDVKGDEVHITFD----GWSGAFDYWCK 79 (104)
T ss_dssp EEEEEEETTEEEEEET----TSCSTTCEEEE
T ss_pred EEEEEEECCEEEEEeC----CCCCccCEEEE
Confidence 7899999999999996 66555677764
Done!