BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030501
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (Zucchini)
 pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (Zucchini)
 pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (Zucchini)
 pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (Zucchini)
 pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (zucchini)
 pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (zucchini)
 pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (zucchini)
 pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
           Medullosa (zucchini)
          Length = 109

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 32  VLHRVGG--GKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDK 89
            +H+VG   G  T  P  ++ +WA    F+VGD L F ++   +NVLQV++  ++ C   
Sbjct: 3   TVHKVGDSTGWTTLVP-YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61

Query: 90  DFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132
               + T G  D   L     FYF+CG   +C  G K+ + V+
Sbjct: 62  SPAASYTSGA-DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 103


>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
          Length = 138

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 49  FTQWAEHQHFYVGDWLYFGFDKHKYNVLQVN-KTNYEKCGDKDFIENVTRGGRDVFNLTE 107
           ++QWA  + F VGD L F F  + +NV ++  K +++ C   +   +V R    +  L E
Sbjct: 23  YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDE 82

Query: 108 AKPFYFICGRGDYCSKGMKIAVHV 131
               YF+C  G +CS G K++++V
Sbjct: 83  LGMHYFVCTVGTHCSNGQKLSINV 106


>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
           Oxidised Form
 pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
           Oxidised Form
 pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
           Reduced Form
 pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
           Reduced Form
          Length = 116

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 38  GGKYTWKPNVN---FTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIEN 94
           GG   WK   +   +  WA  + F VGD L F F    ++V  V K  ++ C  ++ I +
Sbjct: 7   GGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISH 66

Query: 95  VTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHV 131
           +T     +  L    P Y+IC  GD+C  G K++++V
Sbjct: 67  MTTPPVKIM-LNTTGPQYYICTVGDHCRVGQKLSINV 102


>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
          Length = 96

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 38  GGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTR 97
           GG   W    N   W + + F  GD L F ++   +NV+ VN+  +  C +      V  
Sbjct: 6   GGSGGW--TFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTC-NTPAGAKVYT 62

Query: 98  GGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHV 131
            GRD   L + +  YFIC    +C  GMKIAV+ 
Sbjct: 63  SGRDQIKLPKGQS-YFICNFPGHCQSGMKIAVNA 95


>pdb|1F56|A Chain A, Spinach Plantacyanin
 pdb|1F56|B Chain B, Spinach Plantacyanin
 pdb|1F56|C Chain C, Spinach Plantacyanin
          Length = 91

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 43  WKPNVNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDV 102
           W  NVN    A  + F  GD L F + K ++NV+ VN   Y  C         +  G+D 
Sbjct: 7   WSFNVN---GARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSS-GQDR 62

Query: 103 FNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132
             LT  +  YFIC    +C  GMKIA++ +
Sbjct: 63  IKLTRGQN-YFICSFPGHCGGGMKIAINAK 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,109,862
Number of Sequences: 62578
Number of extensions: 261231
Number of successful extensions: 441
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 6
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)