Query 030501
Match_columns 176
No_of_seqs 124 out of 850
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 14:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 2.8E-43 6E-48 283.4 15.5 107 30-139 19-125 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 1.2E-31 2.7E-36 194.2 4.7 82 43-125 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.7 3.3E-07 7.1E-12 69.7 11.5 89 30-132 29-119 (119)
4 PF00127 Copper-bind: Copper b 98.5 5.4E-07 1.2E-11 66.0 7.8 77 54-132 17-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.4 2E-06 4.4E-11 63.2 8.6 91 33-132 2-99 (99)
6 TIGR03102 halo_cynanin halocya 98.3 6.6E-06 1.4E-10 62.9 9.3 92 28-132 20-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.1 2.3E-05 4.9E-10 61.2 9.6 74 54-133 54-128 (128)
8 TIGR02375 pseudoazurin pseudoa 97.9 6.8E-05 1.5E-09 57.4 8.4 74 54-133 15-88 (116)
9 TIGR03095 rusti_cyanin rusticy 97.3 0.0012 2.6E-08 52.3 7.7 74 55-132 53-148 (148)
10 TIGR02657 amicyanin amicyanin. 97.1 0.0035 7.7E-08 44.4 7.6 72 54-132 11-83 (83)
11 PF13473 Cupredoxin_1: Cupredo 96.7 0.0016 3.4E-08 47.8 3.3 65 54-131 35-104 (104)
12 PF06525 SoxE: Sulfocyanin (So 96.6 0.02 4.3E-07 47.7 9.1 79 58-136 90-190 (196)
13 COG4454 Uncharacterized copper 95.3 0.63 1.4E-05 37.6 12.2 79 53-133 62-158 (158)
14 TIGR03094 sulfo_cyanin sulfocy 95.2 0.036 7.9E-07 45.9 5.0 33 104-136 157-189 (195)
15 PF00812 Ephrin: Ephrin; Inte 93.6 0.053 1.2E-06 43.1 2.5 77 56-132 24-144 (145)
16 TIGR02376 Cu_nitrite_red nitri 91.7 0.9 1.9E-05 39.9 7.8 78 55-136 60-149 (311)
17 PLN02604 oxidoreductase 91.3 1.3 2.8E-05 42.0 9.0 80 54-135 55-146 (566)
18 TIGR02866 CoxB cytochrome c ox 90.4 1.5 3.2E-05 36.0 7.4 90 31-134 90-193 (201)
19 TIGR03096 nitroso_cyanin nitro 89.6 0.65 1.4E-05 36.6 4.5 58 53-122 60-123 (135)
20 KOG3858 Ephrin, ligand for Eph 89.1 6 0.00013 33.9 10.3 78 57-135 46-163 (233)
21 PF00116 COX2: Cytochrome C ox 88.1 4 8.7E-05 31.0 7.9 66 54-131 46-119 (120)
22 PLN02354 copper ion binding / 86.9 7.4 0.00016 37.0 10.5 76 55-135 59-148 (552)
23 PRK02888 nitrous-oxide reducta 86.0 3 6.5E-05 40.5 7.5 68 54-133 555-634 (635)
24 PRK10378 inactive ferrous ion 85.8 8.6 0.00019 35.1 9.9 28 102-134 91-118 (375)
25 MTH00047 COX2 cytochrome c oxi 82.7 22 0.00048 29.3 10.4 32 102-135 159-193 (194)
26 PLN02835 oxidoreductase 82.4 14 0.00031 34.9 10.3 79 55-134 61-149 (539)
27 PF07732 Cu-oxidase_3: Multico 81.1 1.4 3.1E-05 33.2 2.6 79 55-134 27-116 (117)
28 COG1622 CyoA Heme/copper-type 79.4 6.8 0.00015 33.7 6.5 91 33-135 114-214 (247)
29 TIGR03388 ascorbase L-ascorbat 76.3 7.8 0.00017 36.5 6.5 79 55-135 33-123 (541)
30 TIGR02695 azurin azurin. Azuri 73.8 4.2 9E-05 31.7 3.3 29 101-130 91-124 (125)
31 PLN02191 L-ascorbate oxidase 73.0 10 0.00022 36.1 6.4 80 55-135 55-145 (574)
32 PF02839 CBM_5_12: Carbohydrat 72.3 2.2 4.8E-05 26.0 1.2 24 49-77 1-24 (41)
33 TIGR02228 sigpep_I_arch signal 70.2 24 0.00051 28.2 7.0 24 55-78 58-85 (158)
34 PLN02991 oxidoreductase 65.8 56 0.0012 31.1 9.6 79 55-134 60-148 (543)
35 PLN00044 multi-copper oxidase- 63.0 28 0.0006 33.6 7.1 76 55-135 61-150 (596)
36 cd06555 ASCH_PF0470_like ASC-1 58.1 9.8 0.00021 28.8 2.6 15 55-69 29-43 (109)
37 PLN02168 copper ion binding / 57.7 44 0.00094 31.9 7.4 80 55-135 58-147 (545)
38 MTH00098 COX2 cytochrome c oxi 56.0 1.2E+02 0.0027 25.5 10.9 30 102-133 183-215 (227)
39 PF12961 DUF3850: Domain of Un 55.6 7.6 0.00016 27.5 1.5 14 54-67 25-38 (72)
40 PLN02792 oxidoreductase 55.2 49 0.0011 31.4 7.3 75 55-134 48-136 (536)
41 TIGR01433 CyoA cytochrome o ub 49.4 1.5E+02 0.0032 25.0 8.6 30 102-133 182-214 (226)
42 MTH00154 COX2 cytochrome c oxi 47.9 1.7E+02 0.0036 24.6 9.5 30 102-133 183-215 (227)
43 KOG1263 Multicopper oxidases [ 44.0 1.1E+02 0.0024 29.5 7.7 78 55-138 60-152 (563)
44 TIGR03389 laccase laccase, pla 43.7 92 0.002 29.3 7.2 82 57-140 37-129 (539)
45 TIGR01480 copper_res_A copper- 43.1 1.1E+02 0.0023 29.5 7.6 76 55-134 77-163 (587)
46 MTH00140 COX2 cytochrome c oxi 41.7 2.1E+02 0.0045 23.9 10.3 31 102-134 183-216 (228)
47 TIGR01480 copper_res_A copper- 40.8 88 0.0019 30.1 6.6 75 54-131 499-586 (587)
48 KOG2315 Predicted translation 39.2 68 0.0015 30.9 5.4 66 52-117 209-279 (566)
49 PF02362 B3: B3 DNA binding do 37.5 26 0.00056 24.5 1.9 19 53-71 69-87 (100)
50 PF11604 CusF_Ec: Copper bindi 34.7 22 0.00047 24.5 1.1 33 41-73 23-58 (70)
51 TIGR01165 cbiN cobalt transpor 34.1 88 0.0019 23.2 4.3 10 46-55 48-57 (91)
52 MTH00117 COX2 cytochrome c oxi 33.5 2.9E+02 0.0062 23.2 9.5 30 102-133 183-215 (227)
53 smart00495 ChtBD3 Chitin-bindi 33.2 28 0.00061 21.0 1.4 18 49-66 1-18 (41)
54 PF07413 Herpes_UL37_2: Betahe 32.8 26 0.00056 30.8 1.5 23 154-176 243-266 (276)
55 PF00686 CBM_20: Starch bindin 32.2 66 0.0014 22.7 3.4 39 32-70 17-68 (96)
56 MTH00168 COX2 cytochrome c oxi 31.3 3.1E+02 0.0068 22.9 11.7 31 102-134 183-216 (225)
57 PRK00059 prsA peptidylprolyl i 31.2 67 0.0015 27.8 3.9 39 1-39 1-44 (336)
58 PF06462 Hyd_WA: Propeller; I 30.9 1E+02 0.0022 18.0 3.5 25 102-126 3-27 (32)
59 MTH00139 COX2 cytochrome c oxi 30.6 3.2E+02 0.0069 22.8 9.6 30 102-133 183-215 (226)
60 PTZ00047 cytochrome c oxidase 30.5 72 0.0016 26.0 3.6 30 102-133 116-148 (162)
61 PF11766 Candida_ALS_N: Cell-w 30.2 32 0.00069 29.7 1.7 38 52-89 2-47 (249)
62 PRK10525 cytochrome o ubiquino 29.9 3.8E+02 0.0083 23.9 8.4 30 102-133 194-226 (315)
63 KOG1263 Multicopper oxidases [ 29.9 82 0.0018 30.3 4.5 36 102-137 506-541 (563)
64 MTH00051 COX2 cytochrome c oxi 29.5 3.5E+02 0.0075 22.8 8.4 30 102-133 187-219 (234)
65 PRK10883 FtsI repressor; Provi 29.1 3.1E+02 0.0067 25.5 8.0 76 55-136 78-168 (471)
66 PF14326 DUF4384: Domain of un 28.8 48 0.001 23.1 2.1 17 56-72 1-17 (83)
67 PLN02792 oxidoreductase 28.1 88 0.0019 29.7 4.4 80 57-136 406-508 (536)
68 PF08139 LPAM_1: Prokaryotic m 27.9 86 0.0019 17.8 2.6 6 18-23 18-23 (25)
69 MTH00038 COX2 cytochrome c oxi 27.5 84 0.0018 26.4 3.7 30 102-133 183-215 (229)
70 PF10377 ATG11: Autophagy-rela 27.4 42 0.00092 25.9 1.8 19 55-73 40-58 (129)
71 TIGR01432 QOXA cytochrome aa3 27.0 3.6E+02 0.0078 22.2 9.0 31 102-134 173-206 (217)
72 PF05382 Amidase_5: Bacterioph 27.0 1.6E+02 0.0035 23.3 5.1 35 56-90 74-113 (145)
73 MTH00129 COX2 cytochrome c oxi 26.9 3.8E+02 0.0083 22.5 9.8 30 102-133 183-215 (230)
74 TIGR03388 ascorbase L-ascorbat 26.7 3.6E+02 0.0078 25.4 8.1 78 57-134 419-526 (541)
75 MTH00023 COX2 cytochrome c oxi 26.6 4E+02 0.0086 22.6 9.7 31 102-134 194-227 (240)
76 MTH00076 COX2 cytochrome c oxi 25.8 4E+02 0.0087 22.3 9.6 30 102-133 183-215 (228)
77 PRK09838 periplasmic copper-bi 25.4 90 0.002 23.7 3.2 23 48-70 79-101 (115)
78 COG3627 PhnJ Uncharacterized e 25.4 46 0.00099 28.7 1.7 25 101-125 257-281 (291)
79 PF01345 DUF11: Domain of unkn 25.3 59 0.0013 21.9 2.0 23 47-69 26-48 (76)
80 PRK12450 foldase protein PrsA; 24.2 1.3E+02 0.0028 26.2 4.5 38 1-39 1-38 (309)
81 cd05808 CBM20_alpha_amylase Al 24.0 91 0.002 21.7 2.9 38 32-69 16-62 (95)
82 cd05810 CBM20_alpha_MTH Glucan 23.6 76 0.0016 22.9 2.4 38 32-69 17-63 (97)
83 TIGR03390 ascorbOXfungal L-asc 23.2 3E+02 0.0065 26.0 6.9 81 57-138 42-134 (538)
84 PRK14125 cell division suppres 23.0 1.2E+02 0.0027 22.4 3.5 44 27-70 32-92 (103)
85 PRK10965 multicopper oxidase; 23.0 3.4E+02 0.0074 25.7 7.2 79 55-137 78-169 (523)
86 PF07731 Cu-oxidase_2: Multico 21.5 38 0.00083 25.0 0.5 33 102-134 105-137 (138)
87 TIGR00849 gutA PTS system, glu 21.3 1.5E+02 0.0034 22.7 3.8 69 56-130 50-119 (121)
88 PF12791 RsgI_N: Anti-sigma fa 20.9 2.4E+02 0.0051 18.0 4.3 36 99-135 5-40 (56)
89 PF02989 DUF228: Lyme disease 20.4 59 0.0013 27.0 1.4 26 48-77 117-144 (184)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=283.40 Aligned_cols=107 Identities=42% Similarity=0.899 Sum_probs=97.9
Q ss_pred CCeEEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCccceeecCCceEEEecCCc
Q 030501 30 SPVLHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAK 109 (176)
Q Consensus 30 ~a~~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G 109 (176)
.+++|+|||+ .||+++.||++|+++|+|++||+|+|+|++++|+|+||++++|++|+.++++..+ ++|++.|+|+++|
T Consensus 19 ~a~~~~VGd~-~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~-tsG~d~v~L~~~G 96 (167)
T PLN03148 19 TATDHIVGAN-KGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNW-TSGKDFIPLNKAK 96 (167)
T ss_pred cceEEEeCCC-CCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCccee-cCCCcEEEecCCc
Confidence 4789999996 6999999999999999999999999999999999999999999999999998775 4689999999999
Q ss_pred cEEEEcCCCCCCcCCCeEEEEeeCCCCCCC
Q 030501 110 PFYFICGRGDYCSKGMKIAVHVETDPPPPT 139 (176)
Q Consensus 110 ~~YFiC~v~~HC~~GmKl~I~V~~~~~~~~ 139 (176)
++||||+ .+||++||||.|+|.+.+|||+
T Consensus 97 ~~YFIcg-~ghC~~GmKl~I~V~~~~~pp~ 125 (167)
T PLN03148 97 RYYFICG-NGQCFNGMKVTILVHPLPPPPS 125 (167)
T ss_pred cEEEEcC-CCccccCCEEEEEEcCCCCCCC
Confidence 9999999 5899999999999987654443
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=1.2e-31 Score=194.21 Aligned_cols=82 Identities=38% Similarity=0.790 Sum_probs=66.7
Q ss_pred CCCCC---CccccccCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCC
Q 030501 43 WKPNV---NFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGD 119 (176)
Q Consensus 43 W~~~~---~Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~ 119 (176)
|+.+. +|++||++++|++||+|+|+|++++|+|+||++++|++|+.++++..+ .+|++.|+|+++|++||||++++
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~-~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTY-STGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE--SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecc-cCCCEEEEeCCCcCeEEEeCCCC
Confidence 77665 999999999999999999999999999999999999999999998764 57899999999999999999999
Q ss_pred CCcCCC
Q 030501 120 YCSKGM 125 (176)
Q Consensus 120 HC~~Gm 125 (176)
||+.||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.70 E-value=3.3e-07 Score=69.71 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCeEEEEcCCCCCC-CCCCCccccccCCceeeCCEEEEeEe-CCcceEEEEcccccCcCCCCCccceeecCCceEEEecC
Q 030501 30 SPVLHRVGGGKYTW-KPNVNFTQWAEHQHFYVGDWLYFGFD-KHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTE 107 (176)
Q Consensus 30 ~a~~~~VGg~~~GW-~~~~~Y~~WA~~~tF~vGD~LvF~y~-~~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~ 107 (176)
...++.+|.+ .|+ .+.+ +..++++||++.|... ...|++.-- . .+....++ . ....+...++++++
T Consensus 29 ~~~~V~~~~~-~~~~~F~P------~~i~v~~Gd~V~~~N~~~~~H~v~~~-~--~~~~~~~~-~-~~~pg~t~~~tF~~ 96 (119)
T PRK02710 29 ETVEVKMGSD-AGMLAFEP------STLTIKAGDTVKWVNNKLAPHNAVFD-G--AKELSHKD-L-AFAPGESWEETFSE 96 (119)
T ss_pred ceEEEEEccC-CCeeEEeC------CEEEEcCCCEEEEEECCCCCceEEec-C--Cccccccc-c-ccCCCCEEEEEecC
Confidence 3445566653 233 3333 5789999999999864 457998642 1 11111111 1 11122345788889
Q ss_pred CccEEEEcCCCCCCcCCCeEEEEee
Q 030501 108 AKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 108 ~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+|.|-|+|. .|=+.|||..|+|.
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999999 69999999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.51 E-value=5.4e-07 Score=66.04 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=53.8
Q ss_pred cCCceeeCCEEEEeEe-CCcceEEEEccc--ccCcCCCCCcc--ceeecCCc-eEEEecCCccEEEEcCCCCCCcCCCeE
Q 030501 54 EHQHFYVGDWLYFGFD-KHKYNVLQVNKT--NYEKCGDKDFI--ENVTRGGR-DVFNLTEAKPFYFICGRGDYCSKGMKI 127 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~-~~~HsV~~V~~~--~Y~~C~~~~~~--~~~~~~G~-~~v~L~~~G~~YFiC~v~~HC~~GmKl 127 (176)
+..++++||++.|... ...|++...+.. .-......... ......|. ..++++++|.|.|+|. + |...||+.
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 5788999999999995 668999997521 11112211110 01112333 4778889999999999 8 99999999
Q ss_pred EEEee
Q 030501 128 AVHVE 132 (176)
Q Consensus 128 ~I~V~ 132 (176)
.|.|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.41 E-value=2e-06 Score=63.17 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=58.9
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-CcceEEEEcccccC------cCCCCCccceeecCCceEEEe
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-HKYNVLQVNKTNYE------KCGDKDFIENVTRGGRDVFNL 105 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-~~HsV~~V~~~~Y~------~C~~~~~~~~~~~~G~~~v~L 105 (176)
+..+|.++.+-.+.+ +..++++||++.|.... ..|++...+.. .. .............+....+++
T Consensus 2 ~v~~g~~~g~~~F~P------~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF 74 (99)
T TIGR02656 2 TVKMGADKGALVFEP------AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTF 74 (99)
T ss_pred EEEEecCCCceeEeC------CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEe
Confidence 356775444555555 47899999999998653 57999764221 00 011100000011223347888
Q ss_pred cCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 106 TEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 106 ~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+++|+|.|+|. .|++.||+..|.|.
T Consensus 75 ~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 75 STPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CCCEEEEEEcC--CccccCCEEEEEEC
Confidence 89999999999 79999999999984
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.29 E-value=6.6e-06 Score=62.88 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=62.8
Q ss_pred cCCCeEEEEcC--CCCCCCCCCCccccccCCceeeCCEEEEeEeC--CcceEEEEcccccCcCCCCCccceeecCCceEE
Q 030501 28 SRSPVLHRVGG--GKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK--HKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVF 103 (176)
Q Consensus 28 ~a~a~~~~VGg--~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~--~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v 103 (176)
.++..+..||. +..+..+.+ +..++++||++.|+++. ..|+|.-.+...|+. .... ...+....+
T Consensus 20 ~~~~~~v~~G~~~~~g~~~F~P------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~~-~~~G~t~s~ 88 (115)
T TIGR03102 20 GQDEVTVDVGAEANGGGFAFDP------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SERV-SEEGTTYEH 88 (115)
T ss_pred CCceEEEEecccCCCCceeEeC------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cccc-cCCCCEEEE
Confidence 34567788983 222344444 57899999999999863 579997533334441 1111 112334578
Q ss_pred EecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 104 NLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 104 ~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+++++|.|-|+|.. |=..|||..|.|.
T Consensus 89 Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 89 TFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 99999999999994 8778999999984
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.15 E-value=2.3e-05 Score=61.17 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=53.7
Q ss_pred cCCceeeCCEEEEeEeCC-cceEEEEcccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 54 EHQHFYVGDWLYFGFDKH-KYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~-~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..++++||++.|.+... .|||.-....+. .....+.. ..+-..+.+++++|.|.|+|.- |=..|||..|.|.
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~---~g~~~~~~-~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDP---EGSGTLKA-GINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCCc---cccccccc-CCCcceEEEecccceEEEEecc--CCCCCcEEEEEeC
Confidence 578999999999999977 899988754311 11111111 1011246788899999999987 8899999999986
Q ss_pred C
Q 030501 133 T 133 (176)
Q Consensus 133 ~ 133 (176)
.
T Consensus 128 ~ 128 (128)
T COG3794 128 E 128 (128)
T ss_pred C
Confidence 3
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.93 E-value=6.8e-05 Score=57.38 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=53.8
Q ss_pred cCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEeeC
Q 030501 54 EHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVET 133 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 133 (176)
+..++++||+|.|.+....|+|.......-+ ..+.... ..+....++++++|.|-|.|. .|=..||+..|+|..
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~---g~~~~~s-~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPE---GAEAFKS-KINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcC---CcccccC-CCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 5789999999999998778998764321111 1111111 112334788999999999999 599999999999977
No 9
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.30 E-value=0.0012 Score=52.31 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCceeeCCEEEEeEeCC----cceEEEEcc-cccC------------cCCCCCccceeecCC-----ceEEEecCCccEE
Q 030501 55 HQHFYVGDWLYFGFDKH----KYNVLQVNK-TNYE------------KCGDKDFIENVTRGG-----RDVFNLTEAKPFY 112 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~----~HsV~~V~~-~~Y~------------~C~~~~~~~~~~~~G-----~~~v~L~~~G~~Y 112 (176)
..+++.||++.|...+. .|.....+. ..+. .|....+ ..+| +.+++++++|+||
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~----~~~g~~~~~~~tf~f~~aGtyw 128 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP----PKSGKFGYTDFTYHFSTAGTYW 128 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC----CCCCccceeEEEEECCCCeEEE
Confidence 34568999999999864 566665431 1110 1211111 1122 3467788999999
Q ss_pred EEcCCCCCCcCCCeEEEEee
Q 030501 113 FICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 113 FiC~v~~HC~~GmKl~I~V~ 132 (176)
|.|..++|=+.||+-.|.|.
T Consensus 129 yhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 129 YLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEcCChhHHHCCCEEEEEEC
Confidence 99999999999999998873
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.09 E-value=0.0035 Score=44.42 Aligned_cols=72 Identities=22% Similarity=0.166 Sum_probs=47.7
Q ss_pred cCCceeeCCEEEEeEeC-CcceEEEEcccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 54 EHQHFYVGDWLYFGFDK-HKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~-~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..++++||+|.|+... ..|+|.-.+... ..=+..++. ...+...+++++++|+|-|.|.... +||-.|.|.
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~~--~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGPM--MKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCC-ccccccccc--cCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 35688999999999885 379997643221 110011111 1123345788999999999999843 599999874
No 11
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.72 E-value=0.0016 Score=47.81 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=29.8
Q ss_pred cCCceeeCCEEEEeEeC---CcceEEEEcccccCcCCCCCccceeecCCceEEEe--cCCccEEEEcCCCCCCcCCCeEE
Q 030501 54 EHQHFYVGDWLYFGFDK---HKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNL--TEAKPFYFICGRGDYCSKGMKIA 128 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~---~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L--~~~G~~YFiC~v~~HC~~GmKl~ 128 (176)
+..+++.|+.+.+.+.+ ..|++.. .+ . +.-.....+...++++ .++|.|=|+|+...+ ||..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~-------~-~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~ 101 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVI-PD-------L-GISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT 101 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEE-GG-------G-TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEE-CC-------C-ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence 47899999955444443 3466643 21 1 1111122233334554 899999999997653 6666
Q ss_pred EEe
Q 030501 129 VHV 131 (176)
Q Consensus 129 I~V 131 (176)
|.|
T Consensus 102 liV 104 (104)
T PF13473_consen 102 LIV 104 (104)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 12
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.57 E-value=0.02 Score=47.74 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=51.3
Q ss_pred eeeCCEEEEeEeCC---cceEEEE-cccccCcCCC---CCccc--------eee----cCCceE---EEecCCccEEEEc
Q 030501 58 FYVGDWLYFGFDKH---KYNVLQV-NKTNYEKCGD---KDFIE--------NVT----RGGRDV---FNLTEAKPFYFIC 115 (176)
Q Consensus 58 F~vGD~LvF~y~~~---~HsV~~V-~~~~Y~~C~~---~~~~~--------~~~----~~G~~~---v~L~~~G~~YFiC 115 (176)
.-.|-++.|+|.+. .|++..| +...+..+.. .+.+. .+. .+|... +.-..+|.||+.|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 34788898988864 6999888 3333333422 12111 000 123332 2122699999999
Q ss_pred CCCCCCcCCCeEEEEeeCCCC
Q 030501 116 GRGDYCSKGMKIAVHVETDPP 136 (176)
Q Consensus 116 ~v~~HC~~GmKl~I~V~~~~~ 136 (176)
+.++|=+.||-..+.|++.-.
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred cCCChhhcCCEEEEEEecCcc
Confidence 999999999999999988653
No 13
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.63 Score=37.62 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=50.2
Q ss_pred ccCCceeeCCEEEEeEeCC---cceEEEEccccc-----------C--cCCCCCcccee--ecCCceEEEecCCccEEEE
Q 030501 53 AEHQHFYVGDWLYFGFDKH---KYNVLQVNKTNY-----------E--KCGDKDFIENV--TRGGRDVFNLTEAKPFYFI 114 (176)
Q Consensus 53 A~~~tF~vGD~LvF~y~~~---~HsV~~V~~~~Y-----------~--~C~~~~~~~~~--~~~G~~~v~L~~~G~~YFi 114 (176)
.++..++.|-+++|--.+. .|....- +.+. + .=+..+.+ .. ..+|.-++.++.+|.|=|+
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~-~~~~~~~~~~~~~~~~Dme~d~~~~v-~L~PG~s~elvv~ft~~g~ye~~ 139 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMD-APDKNLEHVTHMILADDMEHDDPNTV-TLAPGKSGELVVVFTGAGKYEFA 139 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEecc-CccccchhHHHhhhCCccccCCccee-EeCCCCcEEEEEEecCCccEEEE
Confidence 4677889999998876653 3444321 1111 0 00111111 11 1223346788899999999
Q ss_pred cCCCCCCcCCCeEEEEeeC
Q 030501 115 CGRGDYCSKGMKIAVHVET 133 (176)
Q Consensus 115 C~v~~HC~~GmKl~I~V~~ 133 (176)
|.+++|-+.||...|+|.+
T Consensus 140 C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 140 CNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ecCCCcccCCcEEEEEeCC
Confidence 9999999999999999864
No 14
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.24 E-value=0.036 Score=45.92 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=28.6
Q ss_pred EecCCccEEEEcCCCCCCcCCCeEEEEeeCCCC
Q 030501 104 NLTEAKPFYFICGRGDYCSKGMKIAVHVETDPP 136 (176)
Q Consensus 104 ~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~ 136 (176)
+-.++|.||+.|+.++|-+.||=..+.|++...
T Consensus 157 ~~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 157 NDTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred ccCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 334899999999999999999999999987643
No 15
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.64 E-value=0.053 Score=43.08 Aligned_cols=77 Identities=22% Similarity=0.420 Sum_probs=44.1
Q ss_pred CceeeCCEEEEeEeC---C--------cceEEEEcccccCcCCCCCccceee-------cCCceEEEec-----------
Q 030501 56 QHFYVGDWLYFGFDK---H--------KYNVLQVNKTNYEKCGDKDFIENVT-------RGGRDVFNLT----------- 106 (176)
Q Consensus 56 ~tF~vGD~LvF~y~~---~--------~HsV~~V~~~~Y~~C~~~~~~~~~~-------~~G~~~v~L~----------- 106 (176)
..+++||.|.+-=.. . ...+++|++++|+.|+......... .-|...+++.
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 366789999885432 2 4568999999999999632111110 0123333320
Q ss_pred --CCc-cEEEEcCC-----------CCCCc-CCCeEEEEee
Q 030501 107 --EAK-PFYFICGR-----------GDYCS-KGMKIAVHVE 132 (176)
Q Consensus 107 --~~G-~~YFiC~v-----------~~HC~-~GmKl~I~V~ 132 (176)
++| +||||++= +|-|. ..|||.+.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 466 58888742 23385 4799999885
No 16
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=91.68 E-value=0.9 Score=39.87 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=49.0
Q ss_pred CCceeeCCEEEEeEeCC-----cceEEEEcccccCcCCCCCccceeecCCce---EEEecCCccEEEEcCC----CCCCc
Q 030501 55 HQHFYVGDWLYFGFDKH-----KYNVLQVNKTNYEKCGDKDFIENVTRGGRD---VFNLTEAKPFYFICGR----GDYCS 122 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~-----~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~---~v~L~~~G~~YFiC~v----~~HC~ 122 (176)
..+++.||+++.++.+. .|++..=-.... +........ ..|.+ .|+++.+|+|||-|.. ..|=.
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I-~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~ 135 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQV-NPGETATLRFKATRPGAFVYHCAPPGMVPWHVV 135 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeE-CCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhh
Confidence 35678999999888864 466543110000 000111112 23322 6778899999999995 45778
Q ss_pred CCCeEEEEeeCCCC
Q 030501 123 KGMKIAVHVETDPP 136 (176)
Q Consensus 123 ~GmKl~I~V~~~~~ 136 (176)
.||...+.|.+..+
T Consensus 136 ~Gl~G~liV~~~~~ 149 (311)
T TIGR02376 136 SGMNGAIMVLPREG 149 (311)
T ss_pred cCcceEEEeeccCC
Confidence 99999999987543
No 17
>PLN02604 oxidoreductase
Probab=91.29 E-value=1.3 Score=41.96 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=49.1
Q ss_pred cCCceeeCCEEEEeEeCC----cceEE-----EEcccccCcCCCCCccceeecCCc---eEEEecCCccEEEEcCCCCCC
Q 030501 54 EHQHFYVGDWLYFGFDKH----KYNVL-----QVNKTNYEKCGDKDFIENVTRGGR---DVFNLTEAKPFYFICGRGDYC 121 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~----~HsV~-----~V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~HC 121 (176)
...+++.||+++++..+. .|++. +.....+|. ..+..+..-..|. ..|+++++|++||=|-...|-
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~ 132 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQR 132 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHH
Confidence 456788999999988864 12332 110000111 0000000011222 367788999999999999999
Q ss_pred cCCCeEEEEeeCCC
Q 030501 122 SKGMKIAVHVETDP 135 (176)
Q Consensus 122 ~~GmKl~I~V~~~~ 135 (176)
..||.-.|.|.+..
T Consensus 133 ~~Gl~G~liV~~~~ 146 (566)
T PLN02604 133 EAGLYGSIRVSLPR 146 (566)
T ss_pred hCCCeEEEEEEecC
Confidence 99999999998653
No 18
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.38 E-value=1.5 Score=36.03 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=52.2
Q ss_pred CeEEEEcCCCCCCCCCCCcccc------ccCCceeeCCEEEEeEeCC--cceEEEEcccccCcCCCCCccceeecCCc--
Q 030501 31 PVLHRVGGGKYTWKPNVNFTQW------AEHQHFYVGDWLYFGFDKH--KYNVLQVNKTNYEKCGDKDFIENVTRGGR-- 100 (176)
Q Consensus 31 a~~~~VGg~~~GW~~~~~Y~~W------A~~~tF~vGD~LvF~y~~~--~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~-- 100 (176)
+.+..|=+..+.|.. .|.+. .+...+.+|+.+.|.-++. -|+...- .-..+...-.|.
T Consensus 90 ~~~i~v~~~qw~W~f--~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~DV~Hsf~ip----------~~~~k~da~PG~~~ 157 (201)
T TIGR02866 90 ALKVKVEGHQWYWSF--DYPESRRGFTTVNELVVPAGTPVRLQVTSKDVIHSFWVP----------ELGGKIDAIPGQYN 157 (201)
T ss_pred CEEEEEEEEEeEEEE--EcCCcCCCccccCEEEEEcCCEEEEEEEeCchhhccccc----------ccCceEEecCCcEE
Confidence 444555444577773 34433 2344677888888888752 1332221 101111111232
Q ss_pred -eEEEecCCccEEEEcCCCCCCc---CCCeEEEEeeCC
Q 030501 101 -DVFNLTEAKPFYFICGRGDYCS---KGMKIAVHVETD 134 (176)
Q Consensus 101 -~~v~L~~~G~~YFiC~v~~HC~---~GmKl~I~V~~~ 134 (176)
..++.+++|.|+..|+. .|. ..|++.|.|.++
T Consensus 158 ~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 158 ALWFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVER 193 (201)
T ss_pred EEEEEeCCCEEEEEEehh--hCCcCccCCeEEEEEECH
Confidence 25678899999999998 354 459999998763
No 19
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=89.59 E-value=0.65 Score=36.61 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=36.2
Q ss_pred ccCCceeeCCEEEEeEeCC---cceEEEEcccccCcCCCCCccceeecCCce---EEEecCCccEEEEcCCCCCCc
Q 030501 53 AEHQHFYVGDWLYFGFDKH---KYNVLQVNKTNYEKCGDKDFIENVTRGGRD---VFNLTEAKPFYFICGRGDYCS 122 (176)
Q Consensus 53 A~~~tF~vGD~LvF~y~~~---~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~---~v~L~~~G~~YFiC~v~~HC~ 122 (176)
.+..+++.||.+.+.+.+. .|.+.. .+|. .+..+ ..|.+ +++.+++|.|.|+|+. ||.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is~~I----~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---ISEVI----KAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cceEE----CCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 4577889999998877642 355443 2221 11111 22322 5677899999999998 553
No 20
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=89.06 E-value=6 Score=33.93 Aligned_cols=78 Identities=22% Similarity=0.464 Sum_probs=43.9
Q ss_pred ceeeCCEEEEe---EeCC------cceEEEEcccccCcCCC-CCccceee--cC-Cce--------------EEEecCCc
Q 030501 57 HFYVGDWLYFG---FDKH------KYNVLQVNKTNYEKCGD-KDFIENVT--RG-GRD--------------VFNLTEAK 109 (176)
Q Consensus 57 tF~vGD~LvF~---y~~~------~HsV~~V~~~~Y~~C~~-~~~~~~~~--~~-G~~--------------~v~L~~~G 109 (176)
-.++||.|-+- |+.+ ..-++.|++++|+.|+. +.+..... +. ... -+.. +||
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 34568888764 3321 23468899999999996 33211100 00 000 1222 466
Q ss_pred -cEEEEcCC-----------CCCCc-CCCeEEEEeeCCC
Q 030501 110 -PFYFICGR-----------GDYCS-KGMKIAVHVETDP 135 (176)
Q Consensus 110 -~~YFiC~v-----------~~HC~-~GmKl~I~V~~~~ 135 (176)
+||||++- ++-|. ..||+.+.|...+
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~ 163 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSP 163 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccC
Confidence 67778752 35565 3599988887644
No 21
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=88.13 E-value=4 Score=30.96 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=40.2
Q ss_pred cCCceeeCCEEEEeEeCC--cceEEEEcccccCcCCCCCccceeecCCc---eEEEecCCccEEEEcCCCCCCcCC---C
Q 030501 54 EHQHFYVGDWLYFGFDKH--KYNVLQVNKTNYEKCGDKDFIENVTRGGR---DVFNLTEAKPFYFICGRGDYCSKG---M 125 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~--~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~HC~~G---m 125 (176)
+...+..|+.+.|+.++. -|+... . ++ .++...-.|. ..++.++||.|++.|+.- |-.| |
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~i-p--~~-------~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e~--CG~gH~~M 113 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWI-P--EL-------GIKMDAIPGRTNSVTFTPDKPGTYYGQCAEY--CGAGHSFM 113 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEE-T--TC-------TEEEEEBTTCEEEEEEEESSSEEEEEEE-SS--SSTTGGG-
T ss_pred ceecccccceEeEEEEcCCccccccc-c--cc-------CcccccccccceeeeeeeccCCcEEEcCccc--cCcCcCCC
Confidence 344567889998888853 466554 1 11 1111111232 357788999999999984 8876 8
Q ss_pred eEEEEe
Q 030501 126 KIAVHV 131 (176)
Q Consensus 126 Kl~I~V 131 (176)
+..|.|
T Consensus 114 ~~~v~V 119 (120)
T PF00116_consen 114 PGKVIV 119 (120)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888876
No 22
>PLN02354 copper ion binding / oxidoreductase
Probab=86.88 E-value=7.4 Score=37.00 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=49.5
Q ss_pred CCceeeCCEEEEeEeCC--------cceEEEEcccccC-----cCCCCCccceeecCCceEEEe-cCCccEEEEcCCCCC
Q 030501 55 HQHFYVGDWLYFGFDKH--------KYNVLQVNKTNYE-----KCGDKDFIENVTRGGRDVFNL-TEAKPFYFICGRGDY 120 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--------~HsV~~V~~~~Y~-----~C~~~~~~~~~~~~G~~~v~L-~~~G~~YFiC~v~~H 120 (176)
..+++.||+|+.+..+. -|.+.|-.....| .| |+... .+=...|++ +++|++||=+-...+
T Consensus 59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG-~sf~Y~F~~~~q~GT~WYHsH~~~Q 133 (552)
T PLN02354 59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPG-TNFTYHFQPKDQIGSYFYYPSTGMH 133 (552)
T ss_pred cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCC-CcEEEEEEeCCCCcceEEecCccce
Confidence 45778999999888754 3555553211122 24 23210 111236776 479999999988888
Q ss_pred CcCCCeEEEEeeCCC
Q 030501 121 CSKGMKIAVHVETDP 135 (176)
Q Consensus 121 C~~GmKl~I~V~~~~ 135 (176)
-..|+.-.|.|.+..
T Consensus 134 ~~~Gl~G~lII~~~~ 148 (552)
T PLN02354 134 RAAGGFGGLRVNSRL 148 (552)
T ss_pred ecCCccceEEEcCCc
Confidence 889999999997653
No 23
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.02 E-value=3 Score=40.46 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=43.8
Q ss_pred cCCceeeCCEEEEeEeCC------cceEEEEcccccCcCCCCCccceeecCC---ceEEEecCCccEEEEcCCCCCCc--
Q 030501 54 EHQHFYVGDWLYFGFDKH------KYNVLQVNKTNYEKCGDKDFIENVTRGG---RDVFNLTEAKPFYFICGRGDYCS-- 122 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~------~HsV~~V~~~~Y~~C~~~~~~~~~~~~G---~~~v~L~~~G~~YFiC~v~~HC~-- 122 (176)
+..+++.||.+.|..++- .|.... ..|. +......| ..+|+.++||.||++|+.. |.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n-------I~~dv~PG~t~svtF~adkPGvy~~~Ctef--CGa~ 622 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG-------VNMEVAPQATASVTFTADKPGVYWYYCTWF--CHAL 622 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceee---cccC-------ccEEEcCCceEEEEEEcCCCEEEEEECCcc--cccC
Confidence 356789999999999862 244333 1111 11111122 2357788999999999984 54
Q ss_pred -CCCeEEEEeeC
Q 030501 123 -KGMKIAVHVET 133 (176)
Q Consensus 123 -~GmKl~I~V~~ 133 (176)
.+|+..|.|.+
T Consensus 623 H~~M~G~~iVep 634 (635)
T PRK02888 623 HMEMRGRMLVEP 634 (635)
T ss_pred cccceEEEEEEe
Confidence 46999998875
No 24
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=85.76 E-value=8.6 Score=35.09 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 134 (176)
+++| +||+|-|+|+. | ..||-.|+|...
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 4555 79999999965 5 446778888754
No 25
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=82.72 E-value=22 Score=29.33 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=26.2
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeCCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~~ 135 (176)
.++.+++|.|+..|+. -|..| |++.|.|.++.
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4667899999999998 48755 99999998754
No 26
>PLN02835 oxidoreductase
Probab=82.39 E-value=14 Score=34.92 Aligned_cols=79 Identities=11% Similarity=-0.018 Sum_probs=48.5
Q ss_pred CCceeeCCEEEEeEeCC--------cceEEEEcccccCc-CCCCCccceeecCCceEEEe-cCCccEEEEcCCCCCCcCC
Q 030501 55 HQHFYVGDWLYFGFDKH--------KYNVLQVNKTNYEK-CGDKDFIENVTRGGRDVFNL-TEAKPFYFICGRGDYCSKG 124 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~-C~~~~~~~~~~~~G~~~v~L-~~~G~~YFiC~v~~HC~~G 124 (176)
..+++.||+|+.+..+. -|.+.|-.....|. -...-|+... .+=...|++ +++|++||=+-...+-..|
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG-~sf~Y~F~~~~q~GT~WYHsH~~~q~~~G 139 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPN-SNYTYKFQTKDQIGTFTYFPSTLFHKAAG 139 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCC-CcEEEEEEECCCCEeEEEEeCccchhcCc
Confidence 45788999999988764 24444432211221 0001133210 111235765 5799999999888888899
Q ss_pred CeEEEEeeCC
Q 030501 125 MKIAVHVETD 134 (176)
Q Consensus 125 mKl~I~V~~~ 134 (176)
+.-.+.|.+.
T Consensus 140 l~G~lIV~~~ 149 (539)
T PLN02835 140 GFGAINVYER 149 (539)
T ss_pred ccceeEEeCC
Confidence 9999999753
No 27
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=81.09 E-value=1.4 Score=33.16 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=47.3
Q ss_pred CCceeeCCEEEEeEeCC---cceEEE--E--ccc-ccCc--CCCCCccceeecCCceEEEecC-CccEEEEcCCCCCCcC
Q 030501 55 HQHFYVGDWLYFGFDKH---KYNVLQ--V--NKT-NYEK--CGDKDFIENVTRGGRDVFNLTE-AKPFYFICGRGDYCSK 123 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~---~HsV~~--V--~~~-~Y~~--C~~~~~~~~~~~~G~~~v~L~~-~G~~YFiC~v~~HC~~ 123 (176)
...++.||+|.+++.+. .+++.- + +.. ..|. .....++... .+-...|++++ +|++||-|-...|=..
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG-~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPG-ESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTT-EEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEee-cceeeeEeeeccccceeEeeCCCchhcC
Confidence 56788999999999853 455532 1 111 0111 0011122110 01123678888 9999999999875459
Q ss_pred CCeEEEEeeCC
Q 030501 124 GMKIAVHVETD 134 (176)
Q Consensus 124 GmKl~I~V~~~ 134 (176)
||--.|.|.+.
T Consensus 106 GL~G~~iV~~~ 116 (117)
T PF07732_consen 106 GLYGAIIVEPP 116 (117)
T ss_dssp TEEEEEEEE-T
T ss_pred cCEEEEEEcCC
Confidence 99999998764
No 28
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=79.38 E-value=6.8 Score=33.66 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=55.2
Q ss_pred EEEEcCCCCCCCCC-CCccccc-cCCceeeCCEEEEeEeCC--cceEEEEcccccCcCCCCCccceeecCC---ceEEEe
Q 030501 33 LHRVGGGKYTWKPN-VNFTQWA-EHQHFYVGDWLYFGFDKH--KYNVLQVNKTNYEKCGDKDFIENVTRGG---RDVFNL 105 (176)
Q Consensus 33 ~~~VGg~~~GW~~~-~~Y~~WA-~~~tF~vGD~LvF~y~~~--~HsV~~V~~~~Y~~C~~~~~~~~~~~~G---~~~v~L 105 (176)
++.|=+-.+.|.+. ++|.-+. +...+.+|..+.|+-++. -|+...- + ... +...-.| ...++.
T Consensus 114 ~i~v~~~qw~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~IP-~-------l~~--k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 114 TIEVTAYQWKWLFIYPDYGIATVNELVLPVGRPVRFKLTSADVIHSFWIP-Q-------LGG--KIDAIPGMTTELWLTA 183 (247)
T ss_pred EEEEEEEEEEEEEEccCcCccccceEEEeCCCeEEEEEEechhceeEEec-C-------CCc--eeeecCCceEEEEEec
Confidence 33333334667532 2233343 566888999999999864 2444331 1 111 1111122 235778
Q ss_pred cCCccEEEEcCCCCCCcCC---CeEEEEeeCCC
Q 030501 106 TEAKPFYFICGRGDYCSKG---MKIAVHVETDP 135 (176)
Q Consensus 106 ~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~~ 135 (176)
+++|.|+.+|.. .|..| |++.|.|.++.
T Consensus 184 ~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 184 NKPGTYRGICAE--YCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred CCCeEEEEEcHh--hcCCCcccceEEEEEEcHH
Confidence 899999999998 47654 99999998864
No 29
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=76.25 E-value=7.8 Score=36.50 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=49.0
Q ss_pred CCceeeCCEEEEeEeCCc----ceEE-----EEccccc-Cc-CC-CCCccceeecCCceEEEecCCccEEEEcCCCCCCc
Q 030501 55 HQHFYVGDWLYFGFDKHK----YNVL-----QVNKTNY-EK-CG-DKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCS 122 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~~----HsV~-----~V~~~~Y-~~-C~-~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~ 122 (176)
..+++.||+|+++..+.- +++. +. ...| |. -. ..-++.. ..+-...|+++.+|++||-|-.+.|-.
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~-~~~~~DG~~~vtq~~I~P-G~s~~y~f~~~~~Gt~wyH~H~~~q~~ 110 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQI-GTPWADGTAGVTQCAINP-GETFIYNFVVDRPGTYFYHGHYGMQRS 110 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCc-CCcccCCCCccccCCcCC-CCEEEEEEEcCCCEEEEEEecchHHhh
Confidence 567889999999888642 2221 11 1111 11 00 0012211 001123678889999999999999999
Q ss_pred CCCeEEEEeeCCC
Q 030501 123 KGMKIAVHVETDP 135 (176)
Q Consensus 123 ~GmKl~I~V~~~~ 135 (176)
.||...|.|....
T Consensus 111 ~Gl~G~liV~~~~ 123 (541)
T TIGR03388 111 AGLYGSLIVDVPD 123 (541)
T ss_pred ccceEEEEEecCC
Confidence 9999999998653
No 30
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=73.80 E-value=4.2 Score=31.75 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=21.6
Q ss_pred eEEEec----CCcc-EEEEcCCCCCCcCCCeEEEE
Q 030501 101 DVFNLT----EAKP-FYFICGRGDYCSKGMKIAVH 130 (176)
Q Consensus 101 ~~v~L~----~~G~-~YFiC~v~~HC~~GmKl~I~ 130 (176)
++++++ ++|. |=|+|++|+|=. .||-.+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 455554 4675 999999999986 6887664
No 31
>PLN02191 L-ascorbate oxidase
Probab=73.00 E-value=10 Score=36.13 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=48.5
Q ss_pred CCceeeCCEEEEeEeCCc---------ceEEEEcccccCc-CCCC-CccceeecCCceEEEecCCccEEEEcCCCCCCcC
Q 030501 55 HQHFYVGDWLYFGFDKHK---------YNVLQVNKTNYEK-CGDK-DFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSK 123 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~~---------HsV~~V~~~~Y~~-C~~~-~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~ 123 (176)
..+++.||+|+.+..+.- |.+.+-....+|. -..+ -++... .+-...|+++++|++||-|-.+.+-..
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG-~s~~Y~f~~~~~GT~wYHsH~~~q~~~ 133 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPG-ETFTYKFTVEKPGTHFYHGHYGMQRSA 133 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCC-CeEEEEEECCCCeEEEEeeCcHHHHhC
Confidence 457889999998887541 2232211111111 0000 122110 011236788899999999999888899
Q ss_pred CCeEEEEeeCCC
Q 030501 124 GMKIAVHVETDP 135 (176)
Q Consensus 124 GmKl~I~V~~~~ 135 (176)
||.-.|.|.+..
T Consensus 134 Gl~G~liV~~~~ 145 (574)
T PLN02191 134 GLYGSLIVDVAK 145 (574)
T ss_pred CCEEEEEEccCC
Confidence 999999997543
No 32
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=72.32 E-value=2.2 Score=25.99 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=14.1
Q ss_pred ccccccCCceeeCCEEEEeEeCCcceEEE
Q 030501 49 FTQWAEHQHFYVGDWLYFGFDKHKYNVLQ 77 (176)
Q Consensus 49 Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~ 77 (176)
|.+|..+++...||.+.| +..+++
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~-----~g~~y~ 24 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY-----NGKLYQ 24 (41)
T ss_dssp --B--TTCEE-TT-EEEE-----TTEEEE
T ss_pred CCCcCCCCEEcCCCEEEE-----CCCEEE
Confidence 568999999999999987 235555
No 33
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=70.24 E-value=24 Score=28.15 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=17.4
Q ss_pred CCceeeCCEEEEeEeCC----cceEEEE
Q 030501 55 HQHFYVGDWLYFGFDKH----KYNVLQV 78 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~----~HsV~~V 78 (176)
...++.||.++|+.+.+ -|.|..+
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v 85 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEI 85 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEE
Confidence 45789999999998753 2555555
No 34
>PLN02991 oxidoreductase
Probab=65.76 E-value=56 Score=31.14 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=47.8
Q ss_pred CCceeeCCEEEEeEeCC--------cceEEEEcccccCcCC-CCCccceeecCCceEEEe-cCCccEEEEcCCCCCCcCC
Q 030501 55 HQHFYVGDWLYFGFDKH--------KYNVLQVNKTNYEKCG-DKDFIENVTRGGRDVFNL-TEAKPFYFICGRGDYCSKG 124 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~C~-~~~~~~~~~~~G~~~v~L-~~~G~~YFiC~v~~HC~~G 124 (176)
..+++.||+|+.+..+. -|.+.|......|.=. ..-|+... .+=...|++ +++|++||=+-...+-..|
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG-~sftY~F~~~~q~GT~WYHsH~~~q~~~G 138 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPG-KNYTYALQVKDQIGSFYYFPSLGFHKAAG 138 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCC-CcEEEEEEeCCCCcceEEecCcchhhhCC
Confidence 45788999999988864 2445543111122100 00133211 111236777 4899999988877676779
Q ss_pred CeEEEEeeCC
Q 030501 125 MKIAVHVETD 134 (176)
Q Consensus 125 mKl~I~V~~~ 134 (176)
..-.|.|.+.
T Consensus 139 l~G~lIV~~~ 148 (543)
T PLN02991 139 GFGAIRISSR 148 (543)
T ss_pred CeeeEEEeCC
Confidence 9999999865
No 35
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=63.04 E-value=28 Score=33.64 Aligned_cols=76 Identities=12% Similarity=0.042 Sum_probs=49.9
Q ss_pred CCceeeCCEEEEeEeCC--------cceEEEEccc-----ccCcCCCCCccceeecCCceEEEe-cCCccEEEEcCCCCC
Q 030501 55 HQHFYVGDWLYFGFDKH--------KYNVLQVNKT-----NYEKCGDKDFIENVTRGGRDVFNL-TEAKPFYFICGRGDY 120 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--------~HsV~~V~~~-----~Y~~C~~~~~~~~~~~~G~~~v~L-~~~G~~YFiC~v~~H 120 (176)
..+++.||+|+.+..+. -|.+.|-... .+..| |+... .+=...|++ +++|++||-+-.+.+
T Consensus 61 tI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG-~sftY~F~~~dq~GT~WYHsH~~~Q 135 (596)
T PLN00044 61 ALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAG-WNWTYQFQVKDQVGSFFYAPSTALH 135 (596)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCC-CcEEEEEEeCCCCceeEeeccchhh
Confidence 34788999999987754 3555543111 11234 33211 111236777 489999999988888
Q ss_pred CcCCCeEEEEeeCCC
Q 030501 121 CSKGMKIAVHVETDP 135 (176)
Q Consensus 121 C~~GmKl~I~V~~~~ 135 (176)
-..|+...|.|.+..
T Consensus 136 ~~~Gl~GalII~~~~ 150 (596)
T PLN00044 136 RAAGGYGAITINNRD 150 (596)
T ss_pred hhCcCeeEEEEcCcc
Confidence 889999999998753
No 36
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=58.10 E-value=9.8 Score=28.83 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=12.4
Q ss_pred CCceeeCCEEEEeEe
Q 030501 55 HQHFYVGDWLYFGFD 69 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~ 69 (176)
.++|++||.|+|+=-
T Consensus 29 r~~ikvGD~I~f~~~ 43 (109)
T cd06555 29 RQQIKVGDKILFNDL 43 (109)
T ss_pred hhcCCCCCEEEEEEc
Confidence 478999999999554
No 37
>PLN02168 copper ion binding / pectinesterase
Probab=57.74 E-value=44 Score=31.86 Aligned_cols=80 Identities=8% Similarity=-0.057 Sum_probs=49.7
Q ss_pred CCceeeCCEEEEeEeCC--------cceEEEEcccccCc-CCCCCccceeecCCceEEEec-CCccEEEEcCCCCCCcCC
Q 030501 55 HQHFYVGDWLYFGFDKH--------KYNVLQVNKTNYEK-CGDKDFIENVTRGGRDVFNLT-EAKPFYFICGRGDYCSKG 124 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~-C~~~~~~~~~~~~G~~~v~L~-~~G~~YFiC~v~~HC~~G 124 (176)
..+++.||+|+.+..+. -|.+.|-.....|. -...-|+... .+=...|++. ++|++||=+-...+=..|
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG-~sftY~F~~~~q~GT~WYHsH~~~Q~~~G 136 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPG-TNWTYRFQVKDQIGSYFYFPSLLLQKAAG 136 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCC-CcEEEEEEeCCCCceEEEecChhhhhhCc
Confidence 45889999999998864 25555432211222 0101133221 1112367874 799999998777676789
Q ss_pred CeEEEEeeCCC
Q 030501 125 MKIAVHVETDP 135 (176)
Q Consensus 125 mKl~I~V~~~~ 135 (176)
+.-.+.|....
T Consensus 137 L~G~lII~~~~ 147 (545)
T PLN02168 137 GYGAIRIYNPE 147 (545)
T ss_pred ceeEEEEcCCc
Confidence 99999998654
No 38
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=56.00 E-value=1.2e+02 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.415 Sum_probs=23.5
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.+..+++|.+|..|+. -|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 4667899999999998 37655 888887765
No 39
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=55.59 E-value=7.6 Score=27.52 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=12.1
Q ss_pred cCCceeeCCEEEEe
Q 030501 54 EHQHFYVGDWLYFG 67 (176)
Q Consensus 54 ~~~tF~vGD~LvF~ 67 (176)
++..|+|||.|.++
T Consensus 25 NDRdf~VGD~L~L~ 38 (72)
T PF12961_consen 25 NDRDFQVGDILVLR 38 (72)
T ss_pred cCCCCCCCCEEEEE
Confidence 57899999999884
No 40
>PLN02792 oxidoreductase
Probab=55.17 E-value=49 Score=31.40 Aligned_cols=75 Identities=9% Similarity=0.044 Sum_probs=48.1
Q ss_pred CCceeeCCEEEEeEeCC--------cceEEEEcccc-----cCcCCCCCccceeecCCceEEEe-cCCccEEEEcCCCCC
Q 030501 55 HQHFYVGDWLYFGFDKH--------KYNVLQVNKTN-----YEKCGDKDFIENVTRGGRDVFNL-TEAKPFYFICGRGDY 120 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--------~HsV~~V~~~~-----Y~~C~~~~~~~~~~~~G~~~v~L-~~~G~~YFiC~v~~H 120 (176)
..+++.||+|+.+..+. -|.+.|-.... ...| |+... .+=...|++ +++|++||=+-...+
T Consensus 48 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqc----PI~PG-~sftY~F~~~~q~GT~WYHsH~~~q 122 (536)
T PLN02792 48 EIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTC----PIPPG-KNYTYDFQVKDQVGSYFYFPSLAVQ 122 (536)
T ss_pred cEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcC----ccCCC-CcEEEEEEeCCCccceEEecCcchh
Confidence 45788999999998864 35555532111 1123 33210 111236777 479999999988877
Q ss_pred CcCCCeEEEEeeCC
Q 030501 121 CSKGMKIAVHVETD 134 (176)
Q Consensus 121 C~~GmKl~I~V~~~ 134 (176)
-..|+.-.+.|.+.
T Consensus 123 ~~~Gl~G~liI~~~ 136 (536)
T PLN02792 123 KAAGGYGSLRIYSL 136 (536)
T ss_pred hhcccccceEEeCC
Confidence 77888888877764
No 41
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=49.38 E-value=1.5e+02 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=24.5
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.++.+++|.|+-.|+.- |..| |++.|.|.+
T Consensus 182 ~~~~~~~G~y~g~CaE~--CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 182 HLIANEPGVYDGISANY--SGPGFSGMKFKAIATD 214 (226)
T ss_pred EEEeCCCEEEEEEchhh--cCcCccCCeEEEEEEC
Confidence 57788999999999983 7654 999988865
No 42
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.89 E-value=1.7e+02 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=24.0
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.++.+++|.||..|+.- |..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse~--CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSEI--CGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeech--hCcCccCCeEEEEEeC
Confidence 56778999999999984 7655 888888765
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.99 E-value=1.1e+02 Score=29.48 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=52.5
Q ss_pred CCceeeCCEEEEeEeCC--------cceEEEEccccc-CcCCC-CC-ccceeecCCc---eEEEec-CCccEEEEcCCCC
Q 030501 55 HQHFYVGDWLYFGFDKH--------KYNVLQVNKTNY-EKCGD-KD-FIENVTRGGR---DVFNLT-EAKPFYFICGRGD 119 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--------~HsV~~V~~~~Y-~~C~~-~~-~~~~~~~~G~---~~v~L~-~~G~~YFiC~v~~ 119 (176)
......||+|+.+..+. -|.|.|- +..| |. .. ++ |+. .|. ..|+++ +.|++|+.....-
T Consensus 60 ~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG-~~~TqCPI~----Pg~~~tY~F~v~~q~GT~~yh~h~~~ 133 (563)
T KOG1263|consen 60 TINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDG-VYITQCPIQ----PGENFTYRFTVKDQIGTLWYHSHVSW 133 (563)
T ss_pred eEEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccC-CccccCCcC----CCCeEEEEEEeCCcceeEEEeecccc
Confidence 56788999998887743 3555543 2222 11 00 00 222 222 367887 8999999999999
Q ss_pred CCcCCCeEEEEeeCCCCCC
Q 030501 120 YCSKGMKIAVHVETDPPPP 138 (176)
Q Consensus 120 HC~~GmKl~I~V~~~~~~~ 138 (176)
|-..|+...+.|.+....|
T Consensus 134 ~Ra~G~~G~liI~~~~~~p 152 (563)
T KOG1263|consen 134 QRATGVFGALIINPRPGLP 152 (563)
T ss_pred ccccCceeEEEEcCCccCC
Confidence 9999999999999876434
No 44
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=43.74 E-value=92 Score=29.34 Aligned_cols=82 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred ceeeCCEEEEeEeCC--------cceEEEEcccccCc--CCCCCccceeecCCceEEEe-cCCccEEEEcCCCCCCcCCC
Q 030501 57 HFYVGDWLYFGFDKH--------KYNVLQVNKTNYEK--CGDKDFIENVTRGGRDVFNL-TEAKPFYFICGRGDYCSKGM 125 (176)
Q Consensus 57 tF~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~--C~~~~~~~~~~~~G~~~v~L-~~~G~~YFiC~v~~HC~~Gm 125 (176)
.++.||+|+.+..+. -|.+.|......|. .-+.-++.. ..+-...|++ +++|++||=|-...... ||
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~P-G~s~~Y~f~~~~~~GT~WYHsH~~~~~~-Gl 114 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQP-GQSYVYNFTITGQRGTLWWHAHISWLRA-TV 114 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCC-CCeEEEEEEecCCCeeEEEecCchhhhc-cc
Q ss_pred eEEEEeeCCCCCCCC
Q 030501 126 KIAVHVETDPPPPTA 140 (176)
Q Consensus 126 Kl~I~V~~~~~~~~~ 140 (176)
...|.|.+....+.|
T Consensus 115 ~G~lIV~~~~~~~~~ 129 (539)
T TIGR03389 115 YGAIVILPKPGVPYP 129 (539)
T ss_pred eEEEEEcCCCCCCCC
No 45
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=43.14 E-value=1.1e+02 Score=29.53 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=45.7
Q ss_pred CCceeeCCEEEEeEeCC---cceEE----EEcccccCc-CCCC-CccceeecCC--ceEEEecCCccEEEEcCCCCCCcC
Q 030501 55 HQHFYVGDWLYFGFDKH---KYNVL----QVNKTNYEK-CGDK-DFIENVTRGG--RDVFNLTEAKPFYFICGRGDYCSK 123 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~---~HsV~----~V~~~~Y~~-C~~~-~~~~~~~~~G--~~~v~L~~~G~~YFiC~v~~HC~~ 123 (176)
..+++.||.++.++.+. .+++. .+. ...|. ...+ .++. .++ ...|++..+|+|||-|-.+.+=+.
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~-~~~DGvP~vt~~~I~---PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~ 152 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLP-FQMDGVPGVSFAGIA---PGETFTYRFPVRQSGTYWYHSHSGFQEQA 152 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCC-ccccCCCcccccccC---CCCeEEEEEECCCCeeEEEecCchhHhhc
Confidence 45788999999988764 12221 111 01111 1111 1111 122 236788899999999987777778
Q ss_pred CCeEEEEeeCC
Q 030501 124 GMKIAVHVETD 134 (176)
Q Consensus 124 GmKl~I~V~~~ 134 (176)
|+.-.|.|.+.
T Consensus 153 GL~G~lIV~~~ 163 (587)
T TIGR01480 153 GLYGPLIIDPA 163 (587)
T ss_pred cceEEEEECCC
Confidence 99999999754
No 46
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.66 E-value=2.1e+02 Score=23.92 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=25.1
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 134 (176)
.++.+++|.++..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 4667899999999998 48765 9999888763
No 47
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=40.78 E-value=88 Score=30.12 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred cCCceeeCCEEEEeEeCC---cceE------EEEccc--ccCcCCCCCccceeecCCce--EEEecCCccEEEEcCCCCC
Q 030501 54 EHQHFYVGDWLYFGFDKH---KYNV------LQVNKT--NYEKCGDKDFIENVTRGGRD--VFNLTEAKPFYFICGRGDY 120 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~---~HsV------~~V~~~--~Y~~C~~~~~~~~~~~~G~~--~v~L~~~G~~YFiC~v~~H 120 (176)
...+++.||++++.+.+. .|.+ .++... .|.. ..+. .....++.. .|..+.+|+++|=|-...|
T Consensus 499 ~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dT-v~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H 575 (587)
T TIGR01480 499 TPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHT-VDVPPGGKRSFRVTADALGRWAYHCHMLLH 575 (587)
T ss_pred CceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCc-eeeCCCCEEEEEEECCCCeEEEEcCCCHHH
Confidence 357899999999999864 3443 233111 1110 0010 111122222 5677899999999999999
Q ss_pred CcCCCeEEEEe
Q 030501 121 CSKGMKIAVHV 131 (176)
Q Consensus 121 C~~GmKl~I~V 131 (176)
=+.||--.+.|
T Consensus 576 ~~~GM~~~~~v 586 (587)
T TIGR01480 576 MEAGMFREVTV 586 (587)
T ss_pred HhCcCcEEEEe
Confidence 99999877766
No 48
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=39.16 E-value=68 Score=30.90 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=46.0
Q ss_pred cccCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCc----cceeecCCce-EEEecCCccEEEEcCC
Q 030501 52 WAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDF----IENVTRGGRD-VFNLTEAKPFYFICGR 117 (176)
Q Consensus 52 WA~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~----~~~~~~~G~~-~v~L~~~G~~YFiC~v 117 (176)
=.++|+|-.-|.++|+|+.....++.+..++.|.-+.+-. +--....|.+ .|+|.+.|+-|=+|=.
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS 279 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC
Confidence 3478999999999999998888888887777776555421 1001112444 7899999997765533
No 49
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=37.52 E-value=26 Score=24.52 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=12.8
Q ss_pred ccCCceeeCCEEEEeEeCC
Q 030501 53 AEHQHFYVGDWLYFGFDKH 71 (176)
Q Consensus 53 A~~~tF~vGD~LvF~y~~~ 71 (176)
+..+.+++||.++|.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 4789999999999999863
No 50
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=34.74 E-value=22 Score=24.46 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=20.0
Q ss_pred CCCCC---CCCccccccCCceeeCCEEEEeEeCCcc
Q 030501 41 YTWKP---NVNFTQWAEHQHFYVGDWLYFGFDKHKY 73 (176)
Q Consensus 41 ~GW~~---~~~Y~~WA~~~tF~vGD~LvF~y~~~~H 73 (176)
+||.. .....+.+.-..+++||.|.|.+.....
T Consensus 23 l~wpaMTM~F~v~~~~~l~~l~~Gd~V~F~~~~~~~ 58 (70)
T PF11604_consen 23 LGWPAMTMDFPVADPVDLAGLKPGDKVRFTFERTDD 58 (70)
T ss_dssp CTB-SEEEEEE--TTSEESS-STT-EEEEEEEEETT
T ss_pred CCCCCeEEEEEcCChhhhhcCCCCCEEEEEEEECCC
Confidence 57742 2334556677899999999999996433
No 51
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=34.11 E-value=88 Score=23.17 Aligned_cols=10 Identities=10% Similarity=0.561 Sum_probs=7.5
Q ss_pred CCCccccccC
Q 030501 46 NVNFTQWAEH 55 (176)
Q Consensus 46 ~~~Y~~WA~~ 55 (176)
.+||+.|.+.
T Consensus 48 ~p~Y~PWf~P 57 (91)
T TIGR01165 48 GPDYKPWFSP 57 (91)
T ss_pred CCCCcccccc
Confidence 4689999753
No 52
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.54 E-value=2.9e+02 Score=23.17 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=23.9
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.+..+++|.+|-.|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 4677899999999998 47654 888888765
No 53
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=33.21 E-value=28 Score=20.98 Aligned_cols=18 Identities=17% Similarity=0.468 Sum_probs=13.9
Q ss_pred ccccccCCceeeCCEEEE
Q 030501 49 FTQWAEHQHFYVGDWLYF 66 (176)
Q Consensus 49 Y~~WA~~~tF~vGD~LvF 66 (176)
|..|..++.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888887788998866
No 54
>PF07413 Herpes_UL37_2: Betaherpesvirus immediate-early glycoprotein UL37; InterPro: IPR010880 This family consists of several Betaherpesvirus immediate-early glycoprotein UL37 sequences. The human cytomegalovirus (HCMV) UL37 immediate-early regulatory protein is a type I integral membrane N-glycoprotein which traffics through the ER and the Golgi network [].
Probab=32.79 E-value=26 Score=30.83 Aligned_cols=23 Identities=30% Similarity=0.766 Sum_probs=18.0
Q ss_pred chhhHHHHHH-HHHHHHHhhcccC
Q 030501 154 SIHGHLLLAC-TIAFLSIFCSVSV 176 (176)
Q Consensus 154 ~~~~~~~~~~-~~~~~~~~~~~~~ 176 (176)
+..|++.++. ++||++|||++++
T Consensus 243 ~~~g~~~v~~G~~~lL~LFc~l~~ 266 (276)
T PF07413_consen 243 ALIGMFFVASGAFMLLSLFCCLSI 266 (276)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4566666666 9999999999863
No 55
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=32.19 E-value=66 Score=22.71 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=30.1
Q ss_pred eEEEEcCCC--CCCCCC-----------CCccccccCCceeeCCEEEEeEeC
Q 030501 32 VLHRVGGGK--YTWKPN-----------VNFTQWAEHQHFYVGDWLYFGFDK 70 (176)
Q Consensus 32 ~~~~VGg~~--~GW~~~-----------~~Y~~WA~~~tF~vGD~LvF~y~~ 70 (176)
..++||+.. ..|++. .+|..|.....+..|..+.|||--
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 568899853 359851 257889998899999999999974
No 56
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.31 E-value=3.1e+02 Score=22.89 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=24.5
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 134 (176)
.+..+++|.+|..|+.- |..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~CsE~--CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSEI--CGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEcccc--cCcCcCCCeEEEEEeCH
Confidence 46678999999999984 7665 8888887753
No 57
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=31.15 E-value=67 Score=27.77 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=21.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhhhccc-----CCCeEEEEcCC
Q 030501 1 MEGLQKNNQWLIIVVMVTMSVLCVHTES-----RSPVLHRVGGG 39 (176)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~-----a~a~~~~VGg~ 39 (176)
|-.++|+++.+++.++++.+.+|..... .....-+|||.
T Consensus 1 ~~~~~~~~~~~~~~~l~~~~~gc~~~~~~~~~~~~~vvA~Vn~~ 44 (336)
T PRK00059 1 MKSIKKLVASLLVGVFIFSAVGCNMIEKTPEAIAKSTVATVNGE 44 (336)
T ss_pred CchHHHHHHHHHHHHHHHhhccccccccCccccCCCceEEECCE
Confidence 7788998766555554444445543211 12345678764
No 58
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=30.90 E-value=1e+02 Score=17.99 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCe
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMK 126 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmK 126 (176)
.+-++..|.-||=.++...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4667888999999999889998874
No 59
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.64 E-value=3.2e+02 Score=22.78 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=24.4
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.++.+++|.||..|+.- |..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE~--CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSEI--CGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChhh--cCcCcCCCeEEEEEeC
Confidence 56778999999999984 7665 888888765
No 60
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=30.55 E-value=72 Score=25.95 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=23.0
Q ss_pred EEEecCCccEEEEcCCCCCCcC---CCeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSK---GMKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~---GmKl~I~V~~ 133 (176)
.+..+++|.+|..|+.- |.. .|.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsEl--CG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSEM--CGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcchh--cCcCccCceEEEEEeC
Confidence 35668999999999983 654 4888888765
No 61
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=30.24 E-value=32 Score=29.70 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=26.3
Q ss_pred cc-cCCceeeCCEE------EEeEeCCcceEEE-EcccccCcCCCC
Q 030501 52 WA-EHQHFYVGDWL------YFGFDKHKYNVLQ-VNKTNYEKCGDK 89 (176)
Q Consensus 52 WA-~~~tF~vGD~L------vF~y~~~~HsV~~-V~~~~Y~~C~~~ 89 (176)
|+ ++.+++.||+- ||||...+.+|.. ++...|..|++.
T Consensus 2 W~Idgs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~ 47 (249)
T PF11766_consen 2 WSIDGSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQ 47 (249)
T ss_dssp EEEETTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE
T ss_pred ccccccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEeccc
Confidence 54 57889999987 8999877777755 488899999763
No 62
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=29.94 E-value=3.8e+02 Score=23.89 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=24.0
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.++.+++|.|+-.|.. .|..| |++.+.+..
T Consensus 194 ~~~a~~~G~Y~G~CaE--yCG~gHs~M~f~v~v~~ 226 (315)
T PRK10525 194 HLIANEPGTYDGISAS--YSGPGFSGMKFKAIATP 226 (315)
T ss_pred EEEcCCCEEEEEEChh--hcCccccCCeEEEEEEC
Confidence 5677899999999998 47654 999988763
No 63
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.87 E-value=82 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=32.0
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeCCCCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVETDPPP 137 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~~ 137 (176)
.|.++.||..+|=|-+-.|=..||.+...|.+..-+
T Consensus 506 rf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~ 541 (563)
T KOG1263|consen 506 RFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEES 541 (563)
T ss_pred EEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCcc
Confidence 567889999999999999999999999999987654
No 64
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.53 E-value=3.5e+02 Score=22.83 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=23.9
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.+..+++|.+|..|+. -|..| |.+.|.|.+
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEEC
Confidence 4677899999999998 47655 888888765
No 65
>PRK10883 FtsI repressor; Provisional
Probab=29.09 E-value=3.1e+02 Score=25.50 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=43.5
Q ss_pred CCceeeCCEEEEeEeCCc--------ceEEEEcccccCcCCCCCccceeecCCce--EEEec-CCccEEEEcCCCC----
Q 030501 55 HQHFYVGDWLYFGFDKHK--------YNVLQVNKTNYEKCGDKDFIENVTRGGRD--VFNLT-EAKPFYFICGRGD---- 119 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~~--------HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~--~v~L~-~~G~~YFiC~v~~---- 119 (176)
...++.||.|+.++.+.- |.+.+ .....+.. ..++. .+++. .++.+ .+|++||=+-..+
T Consensus 78 tir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~-~~~~~~g~--~~~I~---PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~ 151 (471)
T PRK10883 78 TIRVWKGDDVKLIYSNRLTEPVSMTVSGLQV-PGPLMGGP--ARMMS---PNADWAPVLPIRQNAATCWYHANTPNRMAQ 151 (471)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeECCccC-CCCCCCCc--cccCC---CCCeEEEEEecCCCceeeEEccCCCCchhh
Confidence 457889999999998642 33332 11111111 11221 12222 45555 4899999665432
Q ss_pred CCcCCCeEEEEeeCCCC
Q 030501 120 YCSKGMKIAVHVETDPP 136 (176)
Q Consensus 120 HC~~GmKl~I~V~~~~~ 136 (176)
+-..|+.-.+.|.....
T Consensus 152 qv~~GL~G~lII~d~~~ 168 (471)
T PRK10883 152 HVYNGLAGMWLVEDEVS 168 (471)
T ss_pred hHhcCCeEEEEEeCCcc
Confidence 45579999998887543
No 66
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=28.83 E-value=48 Score=23.07 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=13.9
Q ss_pred CceeeCCEEEEeEeCCc
Q 030501 56 QHFYVGDWLYFGFDKHK 72 (176)
Q Consensus 56 ~tF~vGD~LvF~y~~~~ 72 (176)
.+++.||.|.|.++.+.
T Consensus 1 ~~~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 1 TVYRVGERVRFRVTSNR 17 (83)
T ss_pred CcccCCCEEEEEEEeCC
Confidence 36889999999999643
No 67
>PLN02792 oxidoreductase
Probab=28.12 E-value=88 Score=29.72 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=50.8
Q ss_pred ceeeCCEEEEeEeCC----------cceEEEEc--ccccCc-----CCCCCccce----eecCCce--EEEecCCccEEE
Q 030501 57 HFYVGDWLYFGFDKH----------KYNVLQVN--KTNYEK-----CGDKDFIEN----VTRGGRD--VFNLTEAKPFYF 113 (176)
Q Consensus 57 tF~vGD~LvF~y~~~----------~HsV~~V~--~~~Y~~-----C~~~~~~~~----~~~~G~~--~v~L~~~G~~YF 113 (176)
.+.-|+++..-+.+. .|+...|. ...|+. =|..+|..+ ...+|.. +|..+.||..+|
T Consensus 406 ~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~ 485 (536)
T PLN02792 406 GAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNL 485 (536)
T ss_pred EcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEee
Confidence 345577766655541 34666662 345542 123334321 1124444 677889999999
Q ss_pred EcCCCCCCcCCCeEEEEeeCCCC
Q 030501 114 ICGRGDYCSKGMKIAVHVETDPP 136 (176)
Q Consensus 114 iC~v~~HC~~GmKl~I~V~~~~~ 136 (176)
=|-...|=..||.+.+.|.++..
T Consensus 486 HCh~~~h~~~Gm~~~~~v~~~~~ 508 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVYSPTH 508 (536)
T ss_pred eEcchhccccceEEEEEEccCCC
Confidence 99888898999999999886643
No 68
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=27.86 E-value=86 Score=17.80 Aligned_cols=6 Identities=33% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHHhh
Q 030501 18 TMSVLC 23 (176)
Q Consensus 18 ~~~~~~ 23 (176)
++..+|
T Consensus 18 ~~LagC 23 (25)
T PF08139_consen 18 FMLAGC 23 (25)
T ss_pred HHHhhc
Confidence 344444
No 69
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.50 E-value=84 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=24.1
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.++.+++|.+|..|+.- |..| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse~--CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSEI--CGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEcccc--cCcCcCCCeEEEEEeC
Confidence 46678999999999984 7665 888888765
No 70
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=27.40 E-value=42 Score=25.89 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.2
Q ss_pred CCceeeCCEEEEeEeCCcc
Q 030501 55 HQHFYVGDWLYFGFDKHKY 73 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~~H 73 (176)
-++|++||.+.|-++...|
T Consensus 40 ~~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 40 FRNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred EecCCCCCEEEEEecCCCC
Confidence 4689999999999998655
No 71
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=27.05 E-value=3.6e+02 Score=22.24 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=25.4
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 134 (176)
.++.+++|.|+-.|+. -|-.| |++.|.|.+.
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 5778899999999997 48765 9999988763
No 72
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=27.04 E-value=1.6e+02 Score=23.28 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=28.0
Q ss_pred CceeeCCEEEEeEe-----CCcceEEEEcccccCcCCCCC
Q 030501 56 QHFYVGDWLYFGFD-----KHKYNVLQVNKTNYEKCGDKD 90 (176)
Q Consensus 56 ~tF~vGD~LvF~y~-----~~~HsV~~V~~~~Y~~C~~~~ 90 (176)
...+.||++++.-. ...|+.+-++....-.|+...
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 57899999998665 236999999888888898754
No 73
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.87 E-value=3.8e+02 Score=22.49 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=23.6
Q ss_pred EEEecCCccEEEEcCCCCCCcC---CCeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSK---GMKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~---GmKl~I~V~~ 133 (176)
.+..+++|.+|..|+. -|.. .|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4567899999999998 3654 4888888765
No 74
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=26.66 E-value=3.6e+02 Score=25.44 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=51.3
Q ss_pred ceeeCCEEEEeEeCC---------cc-------eEEEEc--ccccC------cCCCCCcccee----ecCCce--EEEec
Q 030501 57 HFYVGDWLYFGFDKH---------KY-------NVLQVN--KTNYE------KCGDKDFIENV----TRGGRD--VFNLT 106 (176)
Q Consensus 57 tF~vGD~LvF~y~~~---------~H-------sV~~V~--~~~Y~------~C~~~~~~~~~----~~~G~~--~v~L~ 106 (176)
.++.|+++.+-+.+. .| +...+. ...|+ .+|..+|.... ..+|.. +|..+
T Consensus 419 ~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad 498 (541)
T TIGR03388 419 RLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD 498 (541)
T ss_pred EecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC
Confidence 344588887776642 24 666663 34553 35555664321 123433 56788
Q ss_pred CCccEEEEcCCCCCCcCCCeEEEEeeCC
Q 030501 107 EAKPFYFICGRGDYCSKGMKIAVHVETD 134 (176)
Q Consensus 107 ~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 134 (176)
.||...|=|-...|=..||-+.+.....
T Consensus 499 NPG~W~~HCHi~~H~~~GM~~~~~e~~~ 526 (541)
T TIGR03388 499 NPGVWAFHCHIEPHLHMGMGVVFAEGVE 526 (541)
T ss_pred CCeEeeeeccchhhhhcccEEEEecccc
Confidence 9999999999999999999999976543
No 75
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.60 E-value=4e+02 Score=22.56 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=24.7
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 134 (176)
.++.+++|.++-.|+. -|..| |++.|.|.+.
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 4677899999999998 47665 8888887753
No 76
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.79 E-value=4e+02 Score=22.35 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=23.6
Q ss_pred EEEecCCccEEEEcCCCCCCcC---CCeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSK---GMKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~---GmKl~I~V~~ 133 (176)
.+..+++|.+|..|+. -|.. .|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 4667899999999998 3654 4888888765
No 77
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=25.38 E-value=90 Score=23.75 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=17.4
Q ss_pred CccccccCCceeeCCEEEEeEeC
Q 030501 48 NFTQWAEHQHFYVGDWLYFGFDK 70 (176)
Q Consensus 48 ~Y~~WA~~~tF~vGD~LvF~y~~ 70 (176)
...+...-..+++||.+.|.+..
T Consensus 79 ~v~~~~~l~~lk~G~~V~F~~~~ 101 (115)
T PRK09838 79 TITPQTKMSEIKTGDKVAFNFVQ 101 (115)
T ss_pred cCCChhhhccCCCCCEEEEEEEE
Confidence 33444556689999999999984
No 78
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=25.37 E-value=46 Score=28.66 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=21.0
Q ss_pred eEEEecCCccEEEEcCCCCCCcCCC
Q 030501 101 DVFNLTEAKPFYFICGRGDYCSKGM 125 (176)
Q Consensus 101 ~~v~L~~~G~~YFiC~v~~HC~~Gm 125 (176)
+.+.++.-|-+-|+|+.-+||+.-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 4578888898999999999998654
No 79
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=25.30 E-value=59 Score=21.87 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=19.4
Q ss_pred CCccccccCCceeeCCEEEEeEe
Q 030501 47 VNFTQWAEHQHFYVGDWLYFGFD 69 (176)
Q Consensus 47 ~~Y~~WA~~~tF~vGD~LvF~y~ 69 (176)
....+|++..++++||.|+|...
T Consensus 26 ~~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 26 LSITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEEecCCCcccCCCEEEEEEE
Confidence 34577899999999999998776
No 80
>PRK12450 foldase protein PrsA; Reviewed
Probab=24.18 E-value=1.3e+02 Score=26.20 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=20.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhhhcccCCCeEEEEcCC
Q 030501 1 MEGLQKNNQWLIIVVMVTMSVLCVHTESRSPVLHRVGGG 39 (176)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~VGg~ 39 (176)
|-+++++++.+++++.++.+.+|+... ...+.-+|+|+
T Consensus 1 m~~~kk~i~~~~~~~~~~~l~gc~~~~-~~~~VAtvng~ 38 (309)
T PRK12450 1 MKQMNKLITGVVTLATVVTLSACQSSH-NNTKLVSMKGD 38 (309)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCC-CCceEEEECCe
Confidence 667788765555444443334554321 12246788875
No 81
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=24.04 E-value=91 Score=21.67 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=27.2
Q ss_pred eEEEEcCCC--CCCCCC-------CCccccccCCceeeCCEEEEeEe
Q 030501 32 VLHRVGGGK--YTWKPN-------VNFTQWAEHQHFYVGDWLYFGFD 69 (176)
Q Consensus 32 ~~~~VGg~~--~GW~~~-------~~Y~~WA~~~tF~vGD~LvF~y~ 69 (176)
..+++|+.. ..|.+. .++..|.....+..|+.+.|||-
T Consensus 16 ~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 16 NVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 457888632 468742 35567887778888999999986
No 82
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=23.61 E-value=76 Score=22.87 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=28.0
Q ss_pred eEEEEcCCC--CCCCCC-------CCccccccCCceeeCCEEEEeEe
Q 030501 32 VLHRVGGGK--YTWKPN-------VNFTQWAEHQHFYVGDWLYFGFD 69 (176)
Q Consensus 32 ~~~~VGg~~--~GW~~~-------~~Y~~WA~~~tF~vGD~LvF~y~ 69 (176)
..|++|+.. ..|++. .+|..|.....+..|..+.|||-
T Consensus 17 ~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 17 SVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred eEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 457888742 468742 36677988888888999999885
No 83
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=23.17 E-value=3e+02 Score=26.01 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred ceeeCCEEEEeEeCC---------cceEEEEcccccCc-CCCCCccceeecCCceEEEec--CCccEEEEcCCCCCCcCC
Q 030501 57 HFYVGDWLYFGFDKH---------KYNVLQVNKTNYEK-CGDKDFIENVTRGGRDVFNLT--EAKPFYFICGRGDYCSKG 124 (176)
Q Consensus 57 tF~vGD~LvF~y~~~---------~HsV~~V~~~~Y~~-C~~~~~~~~~~~~G~~~v~L~--~~G~~YFiC~v~~HC~~G 124 (176)
.++.||.|+.+..+. -|.+.+-.....|. ...+...-.-..+-...|+++ .+|++||=|-.+.+-..
T Consensus 42 ~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~- 120 (538)
T TIGR03390 42 RLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVT- 120 (538)
T ss_pred EEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhhc-
Q ss_pred CeEEEEeeCCCCCC
Q 030501 125 MKIAVHVETDPPPP 138 (176)
Q Consensus 125 mKl~I~V~~~~~~~ 138 (176)
|...+.|....+++
T Consensus 121 l~G~lIV~~~~~~~ 134 (538)
T TIGR03390 121 AFGPLIVEDCEPPP 134 (538)
T ss_pred ceeEEEEccCCccC
No 84
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=22.97 E-value=1.2e+02 Score=22.42 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=25.1
Q ss_pred ccCCCeEEEEcCCCCCCCCCCCc-----------cccc------cCCceeeCCEEEEeEeC
Q 030501 27 ESRSPVLHRVGGGKYTWKPNVNF-----------TQWA------EHQHFYVGDWLYFGFDK 70 (176)
Q Consensus 27 ~~a~a~~~~VGg~~~GW~~~~~Y-----------~~WA------~~~tF~vGD~LvF~y~~ 70 (176)
++.....|+|=.++.=|.....| -+|- ++...++|+.|..-...
T Consensus 32 ~~~~~~~~tV~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N~l~~~~I~~Gq~L~IP~~~ 92 (103)
T PRK14125 32 DKNQYVEITVQEGDTLWALADQYAGKHHMAKNEFIEWVEDVNNLPSGHIKAGDKLVIPVLK 92 (103)
T ss_pred CCCCcEEEEECCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhcCCCCCcCCCCCEEEEecCC
Confidence 34556678886554457643322 2341 24468888888775554
No 85
>PRK10965 multicopper oxidase; Provisional
Probab=22.95 E-value=3.4e+02 Score=25.68 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=46.4
Q ss_pred CCceeeCCEEEEeEeCC--------cceEEEEcccccCcCCCCCccceeecCCceEEEecC-CccEEEEcCC----CCCC
Q 030501 55 HQHFYVGDWLYFGFDKH--------KYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTE-AKPFYFICGR----GDYC 121 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~-~G~~YFiC~v----~~HC 121 (176)
...++.||.|+.++.+. -|.+.+-. ..|. .+..++... .+-...|++++ +|++||=+-. ..+=
T Consensus 78 tIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG-~pq~~I~PG-~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv 153 (523)
T PRK10965 78 AVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDG-GPQGIIAPG-GKRTVTFTVDQPAATCWFHPHQHGKTGRQV 153 (523)
T ss_pred eEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCC-CCCCCCCCC-CEEEEEeccCCCCceEEEecCCCCCcHHHH
Confidence 44778999999999864 13433321 1221 111122210 01123677775 6999998775 4555
Q ss_pred cCCCeEEEEeeCCCCC
Q 030501 122 SKGMKIAVHVETDPPP 137 (176)
Q Consensus 122 ~~GmKl~I~V~~~~~~ 137 (176)
..|+--.+.|.....+
T Consensus 154 ~~GL~G~lIV~d~~~~ 169 (523)
T PRK10965 154 AMGLAGLVLIEDDESL 169 (523)
T ss_pred hCcCeEEEEEcCcccc
Confidence 6899999999876543
No 86
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=21.54 E-value=38 Score=25.04 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=27.7
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 134 (176)
.+..+.+|.+.|=|-.-.|=..||-..+.|.++
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 466789999999999999999999999998753
No 87
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=21.34 E-value=1.5e+02 Score=22.71 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=40.8
Q ss_pred CceeeCCEEEEeEeCCcceEEEE-cccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEE
Q 030501 56 QHFYVGDWLYFGFDKHKYNVLQV-NKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVH 130 (176)
Q Consensus 56 ~tF~vGD~LvF~y~~~~HsV~~V-~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~ 130 (176)
..+++||+|.+ ......|..| +...-+-.+...-...| + |...- .-||.-|.-.........|.++.|.
T Consensus 50 ~~i~~Gd~l~i--~~~~Y~ItaVG~~a~~NL~~LGHiTi~F-~-g~~~~--~lpG~I~v~~~~~p~i~~G~~I~i~ 119 (121)
T TIGR00849 50 GTLKPGQVFMI--GGIAYPVTAVGDVAEKNLRSLGHITVRF-D-GSNVA--EFPGTVHVEGKEPPKIKPGSKFSIV 119 (121)
T ss_pred CCcCCCCEEEE--CCEEEEEEEEhHHHHHHHHhcCCEEEEE-C-CCCCc--ccCCEEEEcCCCCCcCCCCCEEEEE
Confidence 36899999988 4445667666 32221223333322222 2 22211 2588888876667788999999885
No 88
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.89 E-value=2.4e+02 Score=17.95 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=27.6
Q ss_pred CceEEEecCCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 99 GRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 99 G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
++..+-||..|.+.=+=..++ ++-||++.+......
T Consensus 5 ~~~aiVlT~dGeF~~ik~~~~-~~vG~eI~~~~~~~~ 40 (56)
T PF12791_consen 5 KKYAIVLTPDGEFIKIKRKPG-MEVGQEIEFDEKDII 40 (56)
T ss_pred CCEEEEEcCCCcEEEEeCCCC-CcccCEEEEechhhc
Confidence 466788898898766655555 999999999876654
No 89
>PF02989 DUF228: Lyme disease proteins of unknown function; InterPro: IPR004239 This group comprises proteins of unknown function from Borrelia burgdorferi, the causitive organism of Lyme disease.
Probab=20.45 E-value=59 Score=26.98 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=20.9
Q ss_pred Ccccc--ccCCceeeCCEEEEeEeCCcceEEE
Q 030501 48 NFTQW--AEHQHFYVGDWLYFGFDKHKYNVLQ 77 (176)
Q Consensus 48 ~Y~~W--A~~~tF~vGD~LvF~y~~~~HsV~~ 77 (176)
||+.| +.+.+.+.||.|.|+ .+.+++
T Consensus 117 nFegyLvak~~~ik~gdkL~fN----~~G~le 144 (184)
T PF02989_consen 117 NFEGYLVAKDSTIKAGDKLIFN----KDGELE 144 (184)
T ss_pred CeEEEEEECCCCCCcCcEEEec----CCCeEE
Confidence 78888 679999999999995 355655
Done!