Query 030501
Match_columns 176
No_of_seqs 124 out of 850
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 23:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 4.5E-41 1.5E-45 262.4 6.4 111 30-142 2-117 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 2E-39 7E-44 243.8 7.6 103 31-135 2-106 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 4.1E-39 1.4E-43 244.6 7.5 107 32-140 2-112 (116)
4 2cbp_A Cucumber basic protein; 100.0 4E-37 1.4E-41 226.4 7.5 96 32-132 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.2E-33 4.2E-38 206.1 8.4 91 32-132 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.3 5.1E-12 1.8E-16 96.0 8.9 97 30-132 15-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.2 3.4E-11 1.2E-15 84.2 7.8 87 33-132 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.1 1.4E-10 4.9E-15 90.6 7.1 77 55-132 62-154 (154)
9 1iuz_A Plastocyanin; electron 99.0 1.2E-09 4E-14 78.2 7.0 92 33-132 3-98 (98)
10 2aan_A Auracyanin A; cupredoxi 98.9 7.2E-09 2.5E-13 78.5 10.3 96 30-132 17-139 (139)
11 1pmy_A Pseudoazurin; electron 98.9 2.3E-09 7.8E-14 81.0 7.1 74 54-134 21-95 (123)
12 1plc_A Plastocyanin; electron 98.9 4.1E-09 1.4E-13 75.0 7.6 91 33-132 2-99 (99)
13 1paz_A Pseudoazurin precursor; 98.9 2.8E-09 9.6E-14 80.5 7.0 73 54-133 21-94 (123)
14 2gim_A Plastocyanin; beta shee 98.9 2.8E-09 9.7E-14 76.5 5.9 90 33-132 5-105 (106)
15 2plt_A Plastocyanin; electron 98.9 4.2E-09 1.4E-13 74.6 6.2 92 33-132 3-98 (98)
16 1kdj_A Plastocyanin; electron 98.9 7E-09 2.4E-13 74.1 7.4 91 33-132 2-102 (102)
17 1byp_A Protein (plastocyanin); 98.8 8.8E-09 3E-13 73.2 6.2 91 33-132 2-99 (99)
18 1b3i_A PETE protein, protein ( 98.8 2.2E-08 7.6E-13 70.8 8.0 90 33-132 4-97 (97)
19 3ef4_A Pseudoazurin, blue copp 98.8 1.4E-08 4.7E-13 77.2 7.2 78 43-133 17-95 (124)
20 3erx_A Pseudoazurin; copper pr 98.8 1.4E-08 4.8E-13 76.9 6.9 73 54-133 21-94 (123)
21 3tu6_A Pseudoazurin (blue copp 98.8 1.7E-08 5.7E-13 76.9 7.3 74 54-134 23-97 (127)
22 1pcs_A Plastocyanin; electron 98.7 2.8E-08 9.6E-13 70.4 5.4 92 33-132 4-98 (98)
23 3c75_A Amicyanin; copper prote 98.5 2E-07 6.8E-12 70.7 6.4 72 54-132 60-132 (132)
24 4hci_A Cupredoxin 1; structura 98.2 1.7E-06 6E-11 61.7 5.5 67 54-132 28-100 (100)
25 3cvb_A Plastocyanin; cupredoxi 98.2 1.2E-05 4E-10 57.0 8.7 90 33-132 4-104 (105)
26 1cuo_A Protein (azurin ISO-2); 98.0 4.2E-05 1.4E-09 58.0 10.0 92 33-132 4-128 (129)
27 3ay2_A Lipid modified azurin p 98.0 2.1E-05 7.2E-10 62.5 8.5 94 31-132 42-166 (167)
28 2ux6_A Pseudoazurin; type-1 co 98.0 1E-05 3.5E-10 60.6 6.3 71 54-133 21-92 (122)
29 1id2_A Amicyanin; beta barrel, 97.9 2.5E-05 8.5E-10 56.5 6.6 86 32-132 20-106 (106)
30 2ov0_A Amicyanin; beta-sandwic 97.9 3.2E-05 1.1E-09 55.7 6.6 83 31-132 18-105 (105)
31 1nwp_A Azurin; electron transp 97.6 0.00017 6E-09 54.5 7.6 92 33-132 4-128 (128)
32 2iaa_C Azurin; quinoprotein, t 97.6 0.0004 1.4E-08 52.5 9.2 91 34-132 4-127 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.5 0.00059 2E-08 51.6 9.2 92 33-132 4-128 (129)
34 2cua_A Protein (CUA); CUA cent 97.2 0.0018 6.1E-08 49.2 8.6 68 54-133 60-135 (135)
35 1iko_P Ephrin-B2; greek KEY, g 97.2 0.00024 8E-09 57.2 3.6 82 58-139 26-146 (178)
36 1iby_A Nitrosocyanin; RED copp 96.8 0.0036 1.2E-07 44.9 6.7 67 54-132 38-111 (112)
37 3czu_B Ephrin-A1; ATP-binding, 96.6 0.0034 1.2E-07 50.6 5.9 77 55-135 49-162 (182)
38 1shx_A Ephrin-A5; ephrin signa 96.1 0.015 5E-07 44.9 6.6 77 55-134 22-134 (138)
39 3d12_B Ephrin-B3; beta propell 96.0 0.013 4.6E-07 45.3 6.0 75 57-132 23-140 (141)
40 2x11_B Ephrin-A5; receptor-sig 96.0 0.016 5.5E-07 46.4 6.6 78 55-135 51-164 (177)
41 2dv6_A Nitrite reductase; elec 95.2 0.031 1.1E-06 48.8 6.1 78 54-136 55-135 (447)
42 3s8f_B Cytochrome C oxidase su 95.1 0.11 3.9E-06 40.8 8.7 69 54-132 93-167 (168)
43 3fsa_A Azurin; copper, cupredo 94.6 0.28 9.6E-06 37.0 9.2 74 55-132 19-125 (125)
44 1fwx_A Nitrous oxide reductase 94.5 0.12 4E-06 48.2 8.5 69 54-134 513-593 (595)
45 2wo3_B Ephrin-A2; transferase- 94.5 0.082 2.8E-06 41.5 6.3 77 55-135 31-145 (157)
46 3sbq_A Nitrous-oxide reductase 94.1 0.17 5.8E-06 47.5 8.4 68 54-133 558-637 (638)
47 2vsm_B Ephrin-B2; developmenta 93.8 0.11 3.6E-06 40.1 5.6 77 57-133 24-139 (140)
48 1oe1_A Dissimilatory copper-co 86.1 2.4 8.1E-05 35.5 7.6 76 56-135 67-154 (336)
49 1mzy_A Copper-containing nitri 84.5 2 6.9E-05 35.9 6.4 76 56-135 66-154 (333)
50 1fft_B Ubiquinol oxidase; elec 83.9 6 0.0002 33.9 9.2 87 32-132 127-225 (315)
51 1kbv_A ANIA, major outer membr 83.3 1.8 6.2E-05 36.4 5.7 78 55-135 71-158 (327)
52 3hb3_B Cytochrome C oxidase su 82.5 10 0.00034 32.3 9.9 31 102-134 232-265 (298)
53 2zoo_A Probable nitrite reduct 80.5 2 6.9E-05 37.3 5.0 77 55-135 61-148 (442)
54 2gsm_B Cytochrome C oxidase su 75.2 23 0.00079 29.3 9.8 30 102-133 214-246 (262)
55 3gdc_A Multicopper oxidase; be 73.5 9.9 0.00034 31.2 7.1 79 55-136 67-157 (288)
56 3hei_B Ephrin-A1; EPH receptor 69.8 5.5 0.00019 30.2 4.3 36 55-90 21-67 (132)
57 1oe1_A Dissimilatory copper-co 69.0 5 0.00017 33.5 4.4 34 102-135 286-320 (336)
58 1v54_B Cytochrome C oxidase po 69.0 29 0.001 28.0 8.9 30 102-133 183-215 (227)
59 2bw4_A Copper-containing nitri 68.8 10 0.00036 31.5 6.3 76 56-135 73-160 (340)
60 3iuw_A Activating signal coint 67.4 2.7 9.2E-05 29.5 2.0 17 55-71 35-52 (83)
61 1cyx_A CYOA; electron transpor 67.1 11 0.00037 30.5 5.8 66 55-132 42-115 (205)
62 1aoz_A Ascorbate oxidase; oxid 59.8 17 0.00058 32.6 6.3 77 55-135 35-125 (552)
63 1mzy_A Copper-containing nitri 56.9 6.3 0.00022 32.9 2.8 34 102-135 286-320 (333)
64 2q9o_A Laccase-1; multicopper 55.4 16 0.00055 33.0 5.4 33 102-134 126-158 (559)
65 1zpu_A Iron transport multicop 54.7 21 0.00072 32.0 6.0 77 55-135 35-126 (534)
66 3t6v_A Laccase; beta barrel, o 54.5 25 0.00084 31.4 6.4 34 102-135 97-131 (495)
67 3pxl_A Laccase; 4-copper prote 52.9 27 0.00093 31.2 6.4 34 102-135 96-130 (499)
68 3l6w_A Hemocyanin 1; cupredoxi 52.4 9 0.00031 34.9 3.2 76 55-132 412-491 (491)
69 3g5w_A Multicopper oxidase typ 51.5 11 0.00036 31.6 3.3 77 55-135 35-127 (318)
70 2zwn_A Two-domain type laccase 49.6 18 0.00061 30.3 4.5 82 57-138 38-131 (339)
71 3gdc_A Multicopper oxidase; be 49.5 6.4 0.00022 32.3 1.6 32 102-133 257-288 (288)
72 1sdd_A Coagulation factor V; c 48.7 2.6 9E-05 35.0 -0.9 33 102-134 269-301 (306)
73 3sqr_A Laccase; multicopper ox 44.8 33 0.0011 31.4 5.7 33 102-134 156-188 (580)
74 1kbv_A ANIA, major outer membr 41.6 18 0.00061 30.2 3.2 34 102-135 275-309 (327)
75 2j5w_A Ceruloplasmin, ferroxid 41.2 28 0.00095 34.1 4.9 76 54-134 632-718 (1065)
76 2uxt_A Protein SUFI, SUFI; oxi 40.2 29 0.00098 30.4 4.4 74 56-135 52-140 (451)
77 4i1k_A B3 domain-containing tr 39.0 14 0.00049 27.8 2.0 26 53-78 112-137 (146)
78 1yel_A AT1G16640; CESG, protei 38.6 11 0.00037 26.4 1.2 19 53-71 73-91 (104)
79 2hzs_I RNA polymerase II media 38.6 0.41 1.4E-05 26.4 -4.9 19 55-73 4-22 (27)
80 2hd9_A UPF0310 protein PH1033; 37.9 10 0.00035 28.6 1.0 42 42-84 20-72 (145)
81 3zx1_A Oxidoreductase, putativ 37.1 34 0.0012 30.5 4.4 76 55-137 83-175 (481)
82 3kw8_A Laccase, putative coppe 35.7 23 0.00079 28.7 2.9 29 107-135 239-267 (276)
83 2nms_A CMRF35-like-molecule 1; 33.1 11 0.00037 26.6 0.4 32 106-139 85-117 (124)
84 2zoo_A Probable nitrite reduct 32.1 33 0.0011 29.5 3.4 35 102-136 265-300 (442)
85 2l55_A SILB,silver efflux prot 32.1 23 0.00078 24.2 2.0 30 41-70 28-60 (82)
86 2r7e_B Coagulation factor VIII 30.5 33 0.0011 32.4 3.4 29 107-135 269-299 (770)
87 3t9w_A Small laccase, multi-co 30.5 24 0.00081 29.1 2.2 30 106-135 260-289 (299)
88 1v10_A Laccase; multicopper bl 30.4 1.3E+02 0.0043 26.7 7.1 34 102-135 117-151 (521)
89 2vb2_X Copper protein, cation 29.5 20 0.00068 24.8 1.3 21 50-70 54-74 (88)
90 2y7l_A NT_ALS9-2, agglutinin-l 29.4 22 0.00075 30.5 1.8 37 52-88 38-82 (312)
91 1hfu_A Laccase 1; oxidoreducta 28.9 75 0.0026 28.0 5.3 34 102-135 96-130 (503)
92 1xne_A Hypothetical protein PF 28.9 16 0.00054 26.8 0.7 13 55-67 32-44 (113)
93 2xu9_A Laccase; oxidoreductase 28.8 78 0.0027 27.3 5.3 76 55-134 48-136 (439)
94 2j5w_A Ceruloplasmin, ferroxid 28.7 35 0.0012 33.4 3.3 79 55-138 272-361 (1065)
95 3aw5_A Multicopper oxidase; be 28.5 27 0.00091 30.6 2.2 75 55-136 39-129 (448)
96 2qcp_X Cation efflux system pr 28.1 30 0.001 23.4 2.0 20 51-70 47-66 (80)
97 2z0b_A GDE5, KIAA1434, putativ 27.3 30 0.001 25.3 2.0 40 31-70 23-75 (131)
98 1sdd_B Coagulation factor V; c 26.7 31 0.0011 31.4 2.4 32 102-133 296-327 (647)
99 2z0t_A Putative uncharacterize 26.6 27 0.00093 25.3 1.6 12 55-66 31-42 (109)
100 3cg8_A Laccase; oxidoreductase 25.4 44 0.0015 28.1 3.0 30 106-135 279-308 (343)
101 2dv6_A Nitrite reductase; elec 24.3 48 0.0016 28.4 3.1 34 102-135 402-435 (447)
102 3m62_B UV excision repair prot 24.3 34 0.0011 23.8 1.7 19 122-140 63-81 (106)
103 2cqv_A MLCK, myosin light chai 24.1 1.5E+02 0.0052 19.2 7.1 16 54-69 15-30 (114)
104 2bw4_A Copper-containing nitri 23.6 81 0.0028 26.0 4.3 34 102-135 292-326 (340)
105 3g5w_A Multicopper oxidase typ 20.5 85 0.0029 26.0 3.8 33 102-134 239-277 (318)
106 1whl_A Cylindromatosis tumor s 20.0 90 0.0031 21.8 3.3 16 55-70 5-20 (95)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=4.5e-41 Score=262.40 Aligned_cols=111 Identities=28% Similarity=0.525 Sum_probs=96.9
Q ss_pred CCeEEEEcCCCCCCCCC---CCccccccCCceeeCCEEEEeEeCCcceEEEE-cccccCcCCCCCccceeecCCceEEEe
Q 030501 30 SPVLHRVGGGKYTWKPN---VNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQV-NKTNYEKCGDKDFIENVTRGGRDVFNL 105 (176)
Q Consensus 30 ~a~~~~VGg~~~GW~~~---~~Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~V-~~~~Y~~C~~~~~~~~~~~~G~~~v~L 105 (176)
.+++|+|||+ .||+.+ .||++||++|+|++||+|+|+|.+++|+|+|| ++++|+.|+.++++..+ ++|+++|+|
T Consensus 2 ~a~~~~VGg~-~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~-~~G~~~v~L 79 (138)
T 1jer_A 2 QSTVHIVGDN-TGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDV-ERTSPVIER 79 (138)
T ss_dssp CCCEEETTGG-GCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCC-CCCSCEEEE
T ss_pred CceEEEECCc-CcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccc-cCCCeEEEe
Confidence 3678999996 699987 78999999999999999999999999999999 99999999999988765 568899999
Q ss_pred -cCCccEEEEcCCCCCCcCCCeEEEEeeCCCCCCCCCC
Q 030501 106 -TEAKPFYFICGRGDYCSKGMKIAVHVETDPPPPTASP 142 (176)
Q Consensus 106 -~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~~~~~~p 142 (176)
+++|++||||++++||++||||+|+|.+..++++++|
T Consensus 80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~~p 117 (138)
T 1jer_A 80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPP 117 (138)
T ss_dssp CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-------
T ss_pred ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCCCC
Confidence 9999999999999999999999999998776555444
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=2e-39 Score=243.78 Aligned_cols=103 Identities=29% Similarity=0.664 Sum_probs=94.9
Q ss_pred CeEEEEcCCCCCCCCC--CCccccccCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCccceeecCCceEEEecCC
Q 030501 31 PVLHRVGGGKYTWKPN--VNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEA 108 (176)
Q Consensus 31 a~~~~VGg~~~GW~~~--~~Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~ 108 (176)
+++|+|||+ .||+.+ .||++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++|+..+ ++|+++|+|+++
T Consensus 2 a~~~~VG~~-~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~-~~G~~~v~L~~~ 79 (109)
T 1ws8_A 2 ATVHKVGDS-TGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASY-TSGADSIPLKRP 79 (109)
T ss_dssp CCEEETTGG-GCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEE-CSSEEEEECCSS
T ss_pred CcEEEeCCC-CCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCccccc-CCCCEEEEECCC
Confidence 578999997 699987 8999999999999999999999999999999999999999999998655 578999999999
Q ss_pred ccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 109 KPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 109 G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
|++||||++++||++||||+|+|.+..
T Consensus 80 G~~yFic~~~gHC~~GmKl~I~V~~~~ 106 (109)
T 1ws8_A 80 GTFYFLCGIPGHCQLGQKVEIKVDPGS 106 (109)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred cCEEEECCCCCcccCCCEEEEEEcCCC
Confidence 999999999999999999999998653
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=4.1e-39 Score=244.61 Aligned_cols=107 Identities=29% Similarity=0.493 Sum_probs=92.7
Q ss_pred eEEEEcCCCCCCCC---CCCccccccCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCccceeecCCceEEEecCC
Q 030501 32 VLHRVGGGKYTWKP---NVNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEA 108 (176)
Q Consensus 32 ~~~~VGg~~~GW~~---~~~Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~ 108 (176)
++|+|||+ .||+. +.+|++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++++..+ ++|+++|+|+++
T Consensus 2 ~~~~VG~~-~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~-~~G~~~v~l~~~ 79 (116)
T 1x9u_A 2 EDYDVGGD-MEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHM-TTPPVKIMLNTT 79 (116)
T ss_dssp CEEETTGG-GCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEE-CSSSEEEECCSC
T ss_pred eEEEECCc-CcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCcccc-CCCCeEEEECCC
Confidence 47999997 69986 47899999999999999999999999999999999999999999987665 578999999999
Q ss_pred ccEEEEcCCCCCCcCCCeEEE-EeeCCCCCCCC
Q 030501 109 KPFYFICGRGDYCSKGMKIAV-HVETDPPPPTA 140 (176)
Q Consensus 109 G~~YFiC~v~~HC~~GmKl~I-~V~~~~~~~~~ 140 (176)
|++||||++++||++||||+| +|.+..++++|
T Consensus 80 G~~yFic~~~~HC~~Gmkl~In~V~~~~~~~~~ 112 (116)
T 1x9u_A 80 GPQYYICTVGDHCRVGQKLSINVVGAGGAGGGA 112 (116)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEECC-------
T ss_pred CCEEEECCCCCccccCCEEEEEEECCCCCCCCC
Confidence 999999999999999999999 88776544443
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=4e-37 Score=226.43 Aligned_cols=96 Identities=32% Similarity=0.572 Sum_probs=89.1
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCccceeecCCceEEEecCCccE
Q 030501 32 VLHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPF 111 (176)
Q Consensus 32 ~~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~ 111 (176)
++|+|||+ .||+. +|++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++|+..+ ++|+++|+| ++|++
T Consensus 1 ~~~~VG~~-~GW~~--~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~-~~G~~~v~L-~~g~~ 75 (96)
T 2cbp_A 1 AVYVVGGS-GGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVY-TSGRDQIKL-PKGQS 75 (96)
T ss_dssp CEEETTGG-GCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEE-CSSEEEEEC-CSEEE
T ss_pred CEEEECCc-CCCcc--ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccc-cCCCeEEEe-cCCCE
Confidence 36999996 69995 799999999999999999999999999999999999999999987654 578999999 89999
Q ss_pred EEEcCCCCCCcCCCeEEEEee
Q 030501 112 YFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 112 YFiC~v~~HC~~GmKl~I~V~ 132 (176)
||||++++||++||||+|+|+
T Consensus 76 yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 76 YFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEECCSTTTGGGTCEEEEEEC
T ss_pred EEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.2e-33 Score=206.07 Aligned_cols=91 Identities=32% Similarity=0.526 Sum_probs=83.7
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCccceeecCCceEEEecCCccE
Q 030501 32 VLHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPF 111 (176)
Q Consensus 32 ~~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~ 111 (176)
++|+| ||+.+ ++||++++|++||+|+|+|.+++|+|+||++++|+.|+.++|+..+ ++|++.|+|+ +|++
T Consensus 1 ~~y~V-----gW~~~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~-~~G~~~v~L~-~g~~ 70 (91)
T 1f56_A 1 AVYNI-----GWSFN---VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTY-SSGQDRIKLT-RGQN 70 (91)
T ss_dssp CEEEE-----ECSSS---CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEE-CSSEEEEECC-SEEE
T ss_pred CEEEE-----eCCCC---CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccc-cCCCcEEEeC-CCCe
Confidence 36888 69976 8999999999999999999999999999999999999999987654 5789999996 8999
Q ss_pred EEEcCCCCCCcCCCeEEEEee
Q 030501 112 YFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 112 YFiC~v~~HC~~GmKl~I~V~ 132 (176)
||||++++||++||||+|+|.
T Consensus 71 yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 71 YFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEECCSTTTTTTTCEEEEEEC
T ss_pred EEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.32 E-value=5.1e-12 Score=96.02 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-----CcceEEEEccc-ccCcC-----------------
Q 030501 30 SPVLHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-----HKYNVLQVNKT-NYEKC----------------- 86 (176)
Q Consensus 30 ~a~~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-----~~HsV~~V~~~-~Y~~C----------------- 86 (176)
...++.|+-.+.+|.+.+ +..+++.||+++|.|.+ ..|+++..+.. ++..+
T Consensus 15 ~~~~v~V~~~~~~~~F~P------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
T 1qhq_A 15 PAQTVEVRAAPDALAFAQ------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP 88 (140)
T ss_dssp CSEEEEEEBCSSSSSBSC------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT
T ss_pred CCEEEEEEEeCCCceEeC------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCcc
Confidence 456777775323577665 57899999999999876 47999887421 11110
Q ss_pred CCCCcc---ceee--cCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 87 GDKDFI---ENVT--RGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 87 ~~~~~~---~~~~--~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..+.+ .... .++..+|+++++|+|||+|++++||..|||..|+|.
T Consensus 89 ~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 89 DTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred ccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 000100 0011 123346788899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.22 E-value=3.4e-11 Score=84.17 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=61.3
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-CcceEEEEcccccCcCCCCCccceeecCCceEEEecCCccE
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-HKYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPF 111 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-~~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~ 111 (176)
+..+|+++.+|.+.+ +..++++||+|+|++.. ..|+|...+...+. . .. .....+...+++++++|+|
T Consensus 4 ~v~~~~~~~~~~f~P------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~---~-~~-~~~~~g~~~~~~f~~~G~y 72 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS---H-KD-LAFSPGETFEATFSEPGTY 72 (91)
T ss_dssp EEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC---E-EE-EECSTTCEEEEECCSCEEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC---c-cc-ceeCCCCEEEEEeCCCEEE
Confidence 456776434566555 46789999999999874 57999875432221 0 11 1122233557888999999
Q ss_pred EEEcCCCCCCcCCCeEEEEee
Q 030501 112 YFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 112 YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+|+|. .||..||+..|.|.
T Consensus 73 ~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 73 TYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEECT--TTGGGTCEEEEEEC
T ss_pred EEEeC--CCccCCCEEEEEEC
Confidence 99999 79999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.10 E-value=1.4e-10 Score=90.59 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=58.5
Q ss_pred CCceeeCCEEEEeEeCC----cceEEEEc-ccccCcCCCCCcccee------ecCC---ce--EEEecCCccEEEEcCCC
Q 030501 55 HQHFYVGDWLYFGFDKH----KYNVLQVN-KTNYEKCGDKDFIENV------TRGG---RD--VFNLTEAKPFYFICGRG 118 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~----~HsV~~V~-~~~Y~~C~~~~~~~~~------~~~G---~~--~v~L~~~G~~YFiC~v~ 118 (176)
..++++||+|+|++.+. .|++..++ ...|+.|.....+... -..| +. +|++ ++|+|||+|+.+
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 56889999999999863 59999984 5678778655432111 0123 33 5678 999999999999
Q ss_pred CCCcCCCeEEEEee
Q 030501 119 DYCSKGMKIAVHVE 132 (176)
Q Consensus 119 ~HC~~GmKl~I~V~ 132 (176)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 9
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.97 E-value=1.2e-09 Score=78.16 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=60.8
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-CcceEEEEcc---cccCcCCCCCccceeecCCceEEEecCC
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-HKYNVLQVNK---TNYEKCGDKDFIENVTRGGRDVFNLTEA 108 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-~~HsV~~V~~---~~Y~~C~~~~~~~~~~~~G~~~v~L~~~ 108 (176)
+..+|+++.++.+.+ +..++++||+|.|.+.. ..|+|...+. +.++.+...........+...+++++++
T Consensus 3 ~V~m~~~~~~~~F~P------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~~ 76 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVP------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTP 76 (98)
T ss_dssp EEEESCTTSCCSEES------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSC
T ss_pred EEEEecCCCCcEEeC------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCCC
Confidence 456665434566555 47899999999999876 4899987531 1222221110000112222347888999
Q ss_pred ccEEEEcCCCCCCcCCCeEEEEee
Q 030501 109 KPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 109 G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
|+|+|+|.. ||+.||+..|.|.
T Consensus 77 G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 77 GVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EEEEEECTT--TGGGTCEEEEEEC
T ss_pred EEEEEEchh--hccCCCEEEEEEC
Confidence 999999996 9999999999984
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.93 E-value=7.2e-09 Score=78.50 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCC----cceEEEEccc------------------ccCcCC
Q 030501 30 SPVLHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKH----KYNVLQVNKT------------------NYEKCG 87 (176)
Q Consensus 30 ~a~~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~----~HsV~~V~~~------------------~Y~~C~ 87 (176)
...++.||....++.+.+ +..+++.||++.|.|.+. .|++...+.. +|..|.
T Consensus 17 ~~~~V~v~~~~~~~~F~p------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 90 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDK------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPAD 90 (139)
T ss_dssp CCEEEEEEBCTTSSSBSC------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSC
T ss_pred cCEEEEEEecCCccEEcC------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcc
Confidence 345677853223566554 467899999999988754 7999887532 455564
Q ss_pred CCCccce--eecCC-ceE--EEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 88 DKDFIEN--VTRGG-RDV--FNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 88 ~~~~~~~--~~~~G-~~~--v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
..+.+.. ....| ..+ |+.+++|+|+|+|.+++||+ ||+..|.|.
T Consensus 91 ~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 91 KSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp CTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred cccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 3321110 01233 233 44558999999999999999 999999884
No 11
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.92 E-value=2.3e-09 Score=80.99 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=54.5
Q ss_pred cCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCcc-ceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 54 EHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFI-ENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~-~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..++++||+|.|.+....|+|+..+ .|.+.+.. .....+...+++++++|.|+|+|. .||..||+..|+|.
T Consensus 21 ~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 93 (123)
T 1pmy_A 21 ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVG 93 (123)
T ss_dssp SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEc
Confidence 47789999999999987789998742 23222211 111112234788999999999998 49999999999998
Q ss_pred CC
Q 030501 133 TD 134 (176)
Q Consensus 133 ~~ 134 (176)
+.
T Consensus 94 ~~ 95 (123)
T 1pmy_A 94 DK 95 (123)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 12
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.90 E-value=4.1e-09 Score=75.03 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=60.6
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCC-cceEEEEccc---ccCcCCC---CCccceeecCCceEEEe
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKH-KYNVLQVNKT---NYEKCGD---KDFIENVTRGGRDVFNL 105 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~-~HsV~~V~~~---~Y~~C~~---~~~~~~~~~~G~~~v~L 105 (176)
+..+|+++.++.+.+ +..++++||+|+|++... .|++...+.. ..+.+.. .... ....+...++++
T Consensus 2 ~v~m~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~-~~~~G~~~~~tf 74 (99)
T 1plc_A 2 DVLLGADDGSLAFVP------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDL-LNAKGETFEVAL 74 (99)
T ss_dssp EEEESCTTCCSCEES------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCC-BCSTTCEEEEEC
T ss_pred EEEEecCCCcceEeC------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCcc-ccCCCCEEEEEE
Confidence 356775434455544 478999999999988864 7999875421 1121110 0001 112233457889
Q ss_pred cCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 106 TEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 106 ~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+++|+|+|+|. .||+.||+..|.|.
T Consensus 75 ~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 75 SNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp CSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCCceEEEEcC--CCcccCCEEEEEEC
Confidence 99999999999 79999999999984
No 13
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.90 E-value=2.8e-09 Score=80.51 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=53.7
Q ss_pred cCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCcc-ceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 54 EHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFI-ENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~-~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..++++||+|.|.+....|+|.... .|.+.+.. .....+...+++++++|.|+|+|. .||..||+..|+|.
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 93 (123)
T 1paz_A 21 AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVG 93 (123)
T ss_dssp SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEc
Confidence 47899999999999997789998631 23222211 111112234788999999999998 49999999999997
Q ss_pred C
Q 030501 133 T 133 (176)
Q Consensus 133 ~ 133 (176)
+
T Consensus 94 ~ 94 (123)
T 1paz_A 94 D 94 (123)
T ss_dssp S
T ss_pred C
Confidence 5
No 14
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.87 E-value=2.8e-09 Score=76.51 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=59.7
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-CcceEEEEcccccC-----c--CCCCCccceeecCCceEEE
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-HKYNVLQVNKTNYE-----K--CGDKDFIENVTRGGRDVFN 104 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-~~HsV~~V~~~~Y~-----~--C~~~~~~~~~~~~G~~~v~ 104 (176)
+..+|.++.++.+.+ +..++++||+++|.+.. ..|++...+....+ . +.... . ....+...+++
T Consensus 5 ~V~~~~~~~~~~F~P------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~pG~~~~~~ 76 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQ-L-LMSPGQSTSTT 76 (106)
T ss_dssp EEEESCTTCCSSEES------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCS-C-CCSTTCEEEEE
T ss_pred EEEEEecCCcceEcC------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccc-e-eeCCCCEEEEE
Confidence 466764323566555 46789999999999775 47999864321100 0 00111 1 11223345678
Q ss_pred e---cCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 105 L---TEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 105 L---~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+ +++|.|+|+|. .||+.||+..|.|.
T Consensus 77 f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 77 FPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 8 89999999999 79999999999986
No 15
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.85 E-value=4.2e-09 Score=74.61 Aligned_cols=92 Identities=13% Similarity=0.050 Sum_probs=60.0
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCC-cceEEEEcc---cccCcCCCCCccceeecCCceEEEecCC
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKH-KYNVLQVNK---TNYEKCGDKDFIENVTRGGRDVFNLTEA 108 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~-~HsV~~V~~---~~Y~~C~~~~~~~~~~~~G~~~v~L~~~ 108 (176)
++.+|+++.++.+.+ +..++++||+++|++... .|++...+. ..++.+...........+...+++++++
T Consensus 3 ~V~m~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~~ 76 (98)
T 2plt_A 3 TVKLGADSGALEFVP------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAA 76 (98)
T ss_dssp EEEESCTTCCSSEES------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCSC
T ss_pred EEEEecCCCCceEeC------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCCC
Confidence 456765434566544 367899999999988764 799987532 1122111000001112233447888999
Q ss_pred ccEEEEcCCCCCCcCCCeEEEEee
Q 030501 109 KPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 109 G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
|+|.|+|. .||+.||+..|.|.
T Consensus 77 G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 77 GEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EEEEEECG--GGGGGTCEEEEEEC
T ss_pred eEEEEEcC--CccccCCeEEEEEC
Confidence 99999999 69999999999984
No 16
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.85 E-value=7e-09 Score=74.09 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=60.4
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-CcceEEEEcccccC----cCCCC-----CccceeecCCceE
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-HKYNVLQVNKTNYE----KCGDK-----DFIENVTRGGRDV 102 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-~~HsV~~V~~~~Y~----~C~~~-----~~~~~~~~~G~~~ 102 (176)
+..+|+++.++.+.+ +..++++||+++|.+.. ..|++...+...++ .|... +.. ....+...+
T Consensus 2 ~V~~g~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pG~~~~ 74 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDL-LSEDEPSFK 74 (102)
T ss_dssp EEEESCTTCCCCEES------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCC-BBTTBCEEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccce-ecCCCCEEE
Confidence 356776433455544 46799999999999775 47999875332221 11100 111 112223457
Q ss_pred EEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 103 FNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 103 v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
++++++|+|+|+|. .||..||+..|.|.
T Consensus 75 ~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 75 AKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp ECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 78899999999999 79999999999984
No 17
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.79 E-value=8.8e-09 Score=73.18 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=60.1
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCC-cceEEEEcc---cccCcCCC---CCccceeecCCceEEEe
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKH-KYNVLQVNK---TNYEKCGD---KDFIENVTRGGRDVFNL 105 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~-~HsV~~V~~---~~Y~~C~~---~~~~~~~~~~G~~~v~L 105 (176)
++.+|+++.++.+.+ +..++++||+|+|++... .|++...+. ..++.+.. .... ....+...++++
T Consensus 2 ~V~~~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~-~~~~G~~~~~~f 74 (99)
T 1byp_A 2 EVLLGSSDGGLAFVP------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDL-LNAPGEEYSVTL 74 (99)
T ss_dssp EEEESCTTSCCSEES------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCC-BCSTTCEEEEEE
T ss_pred EEEEecCCCcceEeC------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccce-eeCCCCEEEEEe
Confidence 356765434565544 367899999999988864 799977532 11222210 0001 112223447888
Q ss_pred cCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 106 TEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 106 ~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+++|+|.|+|. .||+.||+..|.|.
T Consensus 75 ~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 75 TEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp CSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCCcEEEEEcC--CccccCCEEEEEEC
Confidence 99999999999 79999999999984
No 18
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.78 E-value=2.2e-08 Score=70.81 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=59.6
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-CcceEEEEcccc---cCcCCCCCccceeecCCceEEEecCC
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-HKYNVLQVNKTN---YEKCGDKDFIENVTRGGRDVFNLTEA 108 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-~~HsV~~V~~~~---Y~~C~~~~~~~~~~~~G~~~v~L~~~ 108 (176)
+..+|+++.++.+.+ +..++++||+++|.+.. ..|++...+... .+.+..... ....+...+++++++
T Consensus 4 ~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~tf~~~ 75 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEP------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKL--AIAPGSFYSVTLGTP 75 (97)
T ss_dssp EEEEEETTTEEEEES------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCC--CCSCSCCEEEECCSC
T ss_pred EEEEeccCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccce--ecCCCCEEEEEeCCC
Confidence 456664323455444 46799999999999875 379998763221 001111111 112233457888999
Q ss_pred ccEEEEcCCCCCCcCCCeEEEEee
Q 030501 109 KPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 109 G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
|+|+|+|. .||+.||+..|.|.
T Consensus 76 G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 76 GTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp SEEEEECS--STTTTTCEEEEEEC
T ss_pred eEEEEEcc--ChhhcCCEEEEEEC
Confidence 99999999 79999999999884
No 19
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.78 E-value=1.4e-08 Score=77.24 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=58.2
Q ss_pred CCCCCCccccccCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCccc-eeecCCceEEEecCCccEEEEcCCCCCC
Q 030501 43 WKPNVNFTQWAEHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFIE-NVTRGGRDVFNLTEAKPFYFICGRGDYC 121 (176)
Q Consensus 43 W~~~~~Y~~WA~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~~-~~~~~G~~~v~L~~~G~~YFiC~v~~HC 121 (176)
+.+.+ +..++++||++.|.+....|+|...+. +.+.+... ....+...+++++++|.|.|+|. .||
T Consensus 17 ~~F~P------~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~ 83 (124)
T 3ef4_A 17 MVFQP------GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHY 83 (124)
T ss_dssp EEEES------SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT--TTG
T ss_pred eEEeC------CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC--CCC
Confidence 66666 488999999999999988899987431 32222111 11122335789999999999997 699
Q ss_pred cCCCeEEEEeeC
Q 030501 122 SKGMKIAVHVET 133 (176)
Q Consensus 122 ~~GmKl~I~V~~ 133 (176)
..||+..|+|..
T Consensus 84 ~~GM~G~I~V~~ 95 (124)
T 3ef4_A 84 GMGMVVLVQVGK 95 (124)
T ss_dssp GGTCEEEEEESS
T ss_pred cCCCEEEEEECC
Confidence 999999999986
No 20
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.77 E-value=1.4e-08 Score=76.86 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=54.7
Q ss_pred cCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCcc-ceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 54 EHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFI-ENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~-~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..++++||++.|.+....|+|...+. +.+.+.. .....+...+++++++|.|+|+|. .||..||+..|.|.
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~ 93 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVG 93 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 578999999999999987899976421 2222211 111122345788999999999999 69999999999998
Q ss_pred C
Q 030501 133 T 133 (176)
Q Consensus 133 ~ 133 (176)
.
T Consensus 94 ~ 94 (123)
T 3erx_A 94 D 94 (123)
T ss_dssp S
T ss_pred C
Confidence 6
No 21
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.76 E-value=1.7e-08 Score=76.90 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=54.8
Q ss_pred cCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCcc-ceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 54 EHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFI-ENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~-~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..++++||++.|.+....|+|...+. +.+.+.. .....+...+++++++|.|+|+|. .||..||+..|.|.
T Consensus 23 ~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~ 95 (127)
T 3tu6_A 23 AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVG 95 (127)
T ss_dssp SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 578999999999999977899986432 2222211 011112345789999999999999 59999999999998
Q ss_pred CC
Q 030501 133 TD 134 (176)
Q Consensus 133 ~~ 134 (176)
..
T Consensus 96 ~~ 97 (127)
T 3tu6_A 96 EP 97 (127)
T ss_dssp SC
T ss_pred cC
Confidence 63
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.66 E-value=2.8e-08 Score=70.41 Aligned_cols=92 Identities=14% Similarity=0.040 Sum_probs=58.7
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-CcceEEEEcccc--cCcCCCCCccceeecCCceEEEecCCc
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-HKYNVLQVNKTN--YEKCGDKDFIENVTRGGRDVFNLTEAK 109 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-~~HsV~~V~~~~--Y~~C~~~~~~~~~~~~G~~~v~L~~~G 109 (176)
+..+|.++.++.+.+ +..++++||+++|.+.. ..|++...+... -+..+..........+...+++++++|
T Consensus 4 ~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G 77 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPG 77 (98)
T ss_dssp EEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCe
Confidence 456765323565544 36799999999999775 479998743210 000000000011112234467889999
Q ss_pred cEEEEcCCCCCCcCCCeEEEEee
Q 030501 110 PFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 110 ~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+|+|+|. .||..||+..|.|.
T Consensus 78 ~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 78 TYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEEcC--CccccCCeEEEEEC
Confidence 9999999 69999999999984
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.49 E-value=2e-07 Score=70.65 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=47.7
Q ss_pred cCCceeeCCEEEEeEeCC-cceEEEEcccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 54 EHQHFYVGDWLYFGFDKH-KYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~-~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..++++||++.|..... .|++...+... ..=..... ....+...+++++++|+|.|+|.. |. ||+..|.|.
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~-g~~~~~s~--~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRGE--MMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEECC--CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCC-Cccccccc--ccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 477899999999987654 69998753221 00000010 111122346788999999999997 76 999999884
No 24
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.21 E-value=1.7e-06 Score=61.74 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=46.1
Q ss_pred cCCceeeCCEEEEeEeCC---cceEEEEcccccCcCCCCCccceeecCCc---eEEEecCCccEEEEcCCCCCCcCCCeE
Q 030501 54 EHQHFYVGDWLYFGFDKH---KYNVLQVNKTNYEKCGDKDFIENVTRGGR---DVFNLTEAKPFYFICGRGDYCSKGMKI 127 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~---~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~HC~~GmKl 127 (176)
+..++++||++.|.+.+. .|++..-+ +. .......|. -.++.+++|.|.|+|. .||..||+.
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~~---~~-------~~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G 95 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFTIKK---LG-------IDVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEG 95 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEEEGG---GT-------EEEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEE
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEEEec---CC-------cceeecCCcceeEEEecccCceEEEECc--cccCCCCEE
Confidence 478999999999987642 47765421 11 001111222 2566789999999996 599999999
Q ss_pred EEEee
Q 030501 128 AVHVE 132 (176)
Q Consensus 128 ~I~V~ 132 (176)
.|.|.
T Consensus 96 ~i~Ve 100 (100)
T 4hci_A 96 KVIVK 100 (100)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99984
No 25
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.15 E-value=1.2e-05 Score=57.01 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=56.4
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeC-CcceEEEEcccccCcCCCC-------CccceeecCCceEEE
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDK-HKYNVLQVNKTNYEKCGDK-------DFIENVTRGGRDVFN 104 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-~~HsV~~V~~~~Y~~C~~~-------~~~~~~~~~G~~~v~ 104 (176)
+..+|.++.+..+.+ ...+++.||+|+|.... ..|++..-... + .+... ........+...+++
T Consensus 4 ~V~~~~~~~~~~f~p------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~pG~~~~~~ 75 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFSPGESYEIT 75 (105)
T ss_dssp EEEESCTTCCSCEES------SEEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred EEEEeecCCccEEeC------CEEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccCCCCeEEEE
Confidence 456764323455443 36789999999998764 47998764211 1 11000 000011122334566
Q ss_pred e---cCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 105 L---TEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 105 L---~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+ +++|+|+|.|. .|+..||+..|.|.
T Consensus 76 f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 76 FSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp ECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 6 78999999999 69999999999985
No 26
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.02 E-value=4.2e-05 Score=58.02 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=56.9
Q ss_pred EEEEcCCCCCCCCCCCccccccCCceeeC-CEEEEeEeCC--------cceEEEEcccc----------------cCcCC
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHFYVG-DWLYFGFDKH--------KYNVLQVNKTN----------------YEKCG 87 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF~vG-D~LvF~y~~~--------~HsV~~V~~~~----------------Y~~C~ 87 (176)
++.|+.. ..+.+.+ +..+++.| |.+.|.+.+. .|+++..+..+ |..=+
T Consensus 4 ~v~i~~~-d~m~F~p------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~ 76 (129)
T 1cuo_A 4 ETTVTSG-DTMTYST------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPG 76 (129)
T ss_dssp EEEEEEC-SSSCCSC------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTT
T ss_pred EEEEEeC-CCceEcc------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccc
Confidence 3456543 3566655 47789999 9777777642 39998875432 21100
Q ss_pred CCCccc--eeecCC-ce--EEEec---CCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 88 DKDFIE--NVTRGG-RD--VFNLT---EAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 88 ~~~~~~--~~~~~G-~~--~v~L~---~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
..+-+. ..-.+| .. +|+.. ++|+|+|+|+.++|=+ |||-.|.|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 77 DKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred cccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 111010 011233 23 44443 8999999999999999 999999986
No 27
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.01 E-value=2.1e-05 Score=62.47 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=57.8
Q ss_pred CeEEEEcCCCCCCCCCCCccccccCCce-eeCCEEEEeEeC--C------cceEEEEcccccC---------------cC
Q 030501 31 PVLHRVGGGKYTWKPNVNFTQWAEHQHF-YVGDWLYFGFDK--H------KYNVLQVNKTNYE---------------KC 86 (176)
Q Consensus 31 a~~~~VGg~~~GW~~~~~Y~~WA~~~tF-~vGD~LvF~y~~--~------~HsV~~V~~~~Y~---------------~C 86 (176)
..++.|+.. +++.+.+ +..++ +.||++.|.+.+ . .|+++..+..+++ .=
T Consensus 42 ~~~V~I~~~-d~m~F~P------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~ 114 (167)
T 3ay2_A 42 NCAATVESN-DNMQFNT------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKP 114 (167)
T ss_dssp CCEEEEEEC-TTSCBSC------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCT
T ss_pred ceEEEEEeC-CCceEec------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccc
Confidence 346677653 3566555 46677 789987766653 2 2999876543221 10
Q ss_pred CCCCccc--eeecCC-ceEEEec----CCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 87 GDKDFIE--NVTRGG-RDVFNLT----EAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 87 ~~~~~~~--~~~~~G-~~~v~L~----~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..+.+. ....+| ...++++ ++|+|+|+|+.++|=+ |||..|+|.
T Consensus 115 ~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 115 DDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp TCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred cccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 1111110 011233 3355554 7999999999999988 999999986
No 28
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.01 E-value=1e-05 Score=60.61 Aligned_cols=71 Identities=14% Similarity=-0.029 Sum_probs=51.1
Q ss_pred cCCceeeCCEEEEeEeCCcceEEEEcccccCcCCCCCcc-ceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 54 EHQHFYVGDWLYFGFDKHKYNVLQVNKTNYEKCGDKDFI-ENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~~~~~-~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+..++++||+|.|.+....|+|...+ .+-+.+.. .....+...+++++++|.|.|+|.. |+. |+..|.|.
T Consensus 21 ~~i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~ 91 (122)
T 2ux6_A 21 ASLKVAPGDTVTFIPTDKGHNVETIK-----GMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVG 91 (122)
T ss_dssp SEEEECTTEEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCcEEEEcc-----cccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEe
Confidence 46789999999999987789998743 12222111 0111123457888999999999997 887 99999997
Q ss_pred C
Q 030501 133 T 133 (176)
Q Consensus 133 ~ 133 (176)
+
T Consensus 92 ~ 92 (122)
T 2ux6_A 92 D 92 (122)
T ss_dssp S
T ss_pred C
Confidence 5
No 29
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.91 E-value=2.5e-05 Score=56.55 Aligned_cols=86 Identities=17% Similarity=0.069 Sum_probs=54.0
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCC-cceEEEEcccccCcCCCCCccceeecCCceEEEecCCcc
Q 030501 32 VLHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKH-KYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKP 110 (176)
Q Consensus 32 ~~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~-~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~ 110 (176)
.++.|.-. ++.+.+ +..++++||+|.|..... .|++...+... ..=..... ....+...+++++++|.
T Consensus 20 ~~~~V~~~--~~~F~P------~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~~s~--~l~~g~~~~~tf~~~G~ 88 (106)
T 1id2_A 20 DAVVVGIE--KMKYLT------PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRGE--MMTKDQAYAITFNEAGS 88 (106)
T ss_dssp TCEEEEEE--TTEESS------SEEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEECC--CBCTTEEEEEEECSCEE
T ss_pred ccEEEEEE--ecEEeC------CEEEECCCCEEEEEECCCCcEEEEEeCCCC-Cccccccc--ccCCCCEEEEEeCCCEE
Confidence 44555532 344444 477899999999987654 69987643210 00000000 11122234678899999
Q ss_pred EEEEcCCCCCCcCCCeEEEEee
Q 030501 111 FYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 111 ~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
|.|+|.. |. ||+..|.|.
T Consensus 89 y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 89 YDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEEECSS--CT--TCEEEEEEC
T ss_pred EEEEeCC--CC--CCEEEEEEC
Confidence 9999998 77 999999884
No 30
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.87 E-value=3.2e-05 Score=55.67 Aligned_cols=83 Identities=20% Similarity=0.065 Sum_probs=54.4
Q ss_pred CeEEEEcCCCCCCCCCCCccccccCCceeeCCEEEEeEeCC-cceEEEEcccc----cCcCCCCCccceeecCCceEEEe
Q 030501 31 PVLHRVGGGKYTWKPNVNFTQWAEHQHFYVGDWLYFGFDKH-KYNVLQVNKTN----YEKCGDKDFIENVTRGGRDVFNL 105 (176)
Q Consensus 31 a~~~~VGg~~~GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~~-~HsV~~V~~~~----Y~~C~~~~~~~~~~~~G~~~v~L 105 (176)
+.++.|.- .+|.+.+ ...++++||+|.|..... .|+|...+..+ |+.. ....+...++++
T Consensus 18 a~~~~V~~--~~~~F~P------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf 82 (105)
T 2ov0_A 18 DGAIVVDI--AKMKYET------PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTF 82 (105)
T ss_dssp TTCEEEEE--ETTEESS------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEE
T ss_pred CcCEEEEE--eecEEcC------CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEe
Confidence 44555553 2455544 477899999999987754 79987643210 1111 011222346788
Q ss_pred cCCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 106 TEAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 106 ~~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
+++|+|+|.|.. |- ||+..|.|.
T Consensus 83 ~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 83 TEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp CSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 999999999998 54 999999884
No 31
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.62 E-value=0.00017 Score=54.54 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=54.8
Q ss_pred EEEEcCCCCCCCCCCCccccccCCce-eeCCEEEEeEeCC--------cceEEEEcccccC----------------cCC
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHF-YVGDWLYFGFDKH--------KYNVLQVNKTNYE----------------KCG 87 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF-~vGD~LvF~y~~~--------~HsV~~V~~~~Y~----------------~C~ 87 (176)
++.|+.. .++.+.+ +..++ +.||++.|.+.+. .|+++..+..+.+ .=+
T Consensus 4 ~v~v~~~-d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~ 76 (128)
T 1nwp_A 4 KVTVDST-DQMSFNT------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDG 76 (128)
T ss_dssp EEEEEEC-TTSCBSC------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTT
T ss_pred EEEEEeC-CCccEec------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccc
Confidence 4556643 3566655 46677 7899877777642 2999876432211 000
Q ss_pred CCCccc--eeecCC-ceEEEec----CCcc-EEEEcCCCCCCcCCCeEEEEee
Q 030501 88 DKDFIE--NVTRGG-RDVFNLT----EAKP-FYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 88 ~~~~~~--~~~~~G-~~~v~L~----~~G~-~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
..+-+. ....+| ...++++ ++|. |.|+|++++|=+ |||..|+|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 77 DARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp CTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 011010 011233 3344443 5676 999999999999 999999883
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.60 E-value=0.0004 Score=52.52 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=53.2
Q ss_pred EEEcCCCCCCCCCCCccccccCCce-eeCCEEEEeEeCC--------cceEEEEccc----------------ccCcCCC
Q 030501 34 HRVGGGKYTWKPNVNFTQWAEHQHF-YVGDWLYFGFDKH--------KYNVLQVNKT----------------NYEKCGD 88 (176)
Q Consensus 34 ~~VGg~~~GW~~~~~Y~~WA~~~tF-~vGD~LvF~y~~~--------~HsV~~V~~~----------------~Y~~C~~ 88 (176)
+.|+.. .++.+.+ +..++ +.||++.|.+.+. .|+++..+.. +|..=+.
T Consensus 4 v~v~~~-d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~ 76 (128)
T 2iaa_C 4 VSIEGN-DSMQFNT------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGD 76 (128)
T ss_dssp EEEEEC-TTSCBSC------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTC
T ss_pred EEEEeC-CCceEec------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccccccc
Confidence 345543 3566544 34556 6699777777642 3999876433 2211011
Q ss_pred CCccc--eeecCC-ceEEEec----CCc-cEEEEcCCCCCCcCCCeEEEEee
Q 030501 89 KDFIE--NVTRGG-RDVFNLT----EAK-PFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 89 ~~~~~--~~~~~G-~~~v~L~----~~G-~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
.+-+. ..-.+| ...++++ ++| +|.|+|+.++|=+ |||-.|+|.
T Consensus 77 ~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 77 ERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp TTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred chhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 11110 011233 3344444 678 5999999999999 999999985
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.51 E-value=0.00059 Score=51.61 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=52.9
Q ss_pred EEEEcCCCCCCCCCCCccccccCCce-eeCCEEEEeEeCC--------cceEEEEcccc----------------cCcCC
Q 030501 33 LHRVGGGKYTWKPNVNFTQWAEHQHF-YVGDWLYFGFDKH--------KYNVLQVNKTN----------------YEKCG 87 (176)
Q Consensus 33 ~~~VGg~~~GW~~~~~Y~~WA~~~tF-~vGD~LvF~y~~~--------~HsV~~V~~~~----------------Y~~C~ 87 (176)
++.|+.. .+..+.+ +..++ +.||++.|.+.+. .|+++..+..+ |..=+
T Consensus 4 ~v~v~~~-d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (129)
T 2ccw_A 4 EATVESN-DAMQYNV------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAG 76 (129)
T ss_dssp EEEEEEC-TTSCBSC------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTT
T ss_pred EEEEEeC-CCccEec------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccc
Confidence 4556643 3455544 34555 5699777777642 39998765432 21101
Q ss_pred CCCccc--eeecCC-ceEE--Eec--CCcc-EEEEcCCCCCCcCCCeEEEEee
Q 030501 88 DKDFIE--NVTRGG-RDVF--NLT--EAKP-FYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 88 ~~~~~~--~~~~~G-~~~v--~L~--~~G~-~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
..+-+. ..-.+| ...+ +.. ++|. |+|+|+.++|=+ |||-.|+|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 77 DTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp CTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 111010 011233 2344 444 5655 999999999988 999999985
No 34
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=97.20 E-value=0.0018 Score=49.22 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=46.3
Q ss_pred cCCceeeCCEEEEeEeCC--cceEEEEcccccCcCCCCCccceeecCC---ceEEEecCCccEEEEcCC---CCCCcCCC
Q 030501 54 EHQHFYVGDWLYFGFDKH--KYNVLQVNKTNYEKCGDKDFIENVTRGG---RDVFNLTEAKPFYFICGR---GDYCSKGM 125 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~--~HsV~~V~~~~Y~~C~~~~~~~~~~~~G---~~~v~L~~~G~~YFiC~v---~~HC~~Gm 125 (176)
+..++.+||.+.|...+. .|++.. . ++. +......| ...++.+++|.|+|.|.. .+| .+|
T Consensus 60 ~~l~Vp~G~~V~~~vts~DV~Hsf~i-p--~~~-------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M 127 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPDVIHGFHV-E--GTN-------INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNM 127 (135)
T ss_dssp SSEEEETTSEEEEEEEBSSSCEEEEE-T--TSS-------CEEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTC
T ss_pred CEEEEcCCCEEEEEEEeCCccceEEe-c--CCC-------ceeEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCC
Confidence 477899999999999753 477653 1 111 11111123 236888999999999987 344 689
Q ss_pred eEEEEeeC
Q 030501 126 KIAVHVET 133 (176)
Q Consensus 126 Kl~I~V~~ 133 (176)
+..|.|.+
T Consensus 128 ~g~v~V~~ 135 (135)
T 2cua_A 128 FGTIVVKE 135 (135)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 99999863
No 35
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.18 E-value=0.00024 Score=57.15 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=50.9
Q ss_pred eeeCCEEEEe---EeC------CcceEEEEcccccCcCCCCCc---cceeec-CCceEEEec-------------CCc-c
Q 030501 58 FYVGDWLYFG---FDK------HKYNVLQVNKTNYEKCGDKDF---IENVTR-GGRDVFNLT-------------EAK-P 110 (176)
Q Consensus 58 F~vGD~LvF~---y~~------~~HsV~~V~~~~Y~~C~~~~~---~~~~~~-~G~~~v~L~-------------~~G-~ 110 (176)
.++||.|.+- |+. ..+.+++|++++|+.|+.... +..=.+ .+...+++. ++| +
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 4569999775 322 248899999999999987631 111111 122233321 466 7
Q ss_pred EEEEcCCC-----------CCCcC-CCeEEEEeeCCCCCCC
Q 030501 111 FYFICGRG-----------DYCSK-GMKIAVHVETDPPPPT 139 (176)
Q Consensus 111 ~YFiC~v~-----------~HC~~-GmKl~I~V~~~~~~~~ 139 (176)
|||||+-. ++|.. +|||.|.|...+..+.
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~~~ 146 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAG 146 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC-----
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCCCCCC
Confidence 99998753 79974 9999999977654433
No 36
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.79 E-value=0.0036 Score=44.90 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=44.0
Q ss_pred cCCceeeCCEEEEeEeCC---cceEEEEcccccCcCCCCCccceeecCCc-e--EEEecCCccEEEEcCCCCCCcC-CCe
Q 030501 54 EHQHFYVGDWLYFGFDKH---KYNVLQVNKTNYEKCGDKDFIENVTRGGR-D--VFNLTEAKPFYFICGRGDYCSK-GMK 126 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~---~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~-~--~v~L~~~G~~YFiC~v~~HC~~-GmK 126 (176)
+..+++.||.+.|.+.+. .|++..-+ +. +......|. . .|+.+++|.|+|.|.. ||.. +|+
T Consensus 38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i~~---~~-------~~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~ 105 (112)
T 1iby_A 38 ETLVVKKGDAVKVVVENKSPISEGFSIDA---FG-------VQEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLP 105 (112)
T ss_dssp CEEEEETTCEEEEEEEECSSSCEEEEEGG---GT-------EEEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCC
T ss_pred CEEEEeCCCEEEEEEEECCCCeEEEEEcC---CC-------ceeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCE
Confidence 467889999999987742 57765422 11 111112232 2 3445899999999998 6743 499
Q ss_pred EEEEee
Q 030501 127 IAVHVE 132 (176)
Q Consensus 127 l~I~V~ 132 (176)
..|.|.
T Consensus 106 g~i~V~ 111 (112)
T 1iby_A 106 GTLNVV 111 (112)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999885
No 37
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.61 E-value=0.0034 Score=50.57 Aligned_cols=77 Identities=17% Similarity=0.416 Sum_probs=47.1
Q ss_pred CCceeeCCEEEEe---EeC--------CcceEEEEcccccCcCCCCCccceee-------cCCceEEE------------
Q 030501 55 HQHFYVGDWLYFG---FDK--------HKYNVLQVNKTNYEKCGDKDFIENVT-------RGGRDVFN------------ 104 (176)
Q Consensus 55 ~~tF~vGD~LvF~---y~~--------~~HsV~~V~~~~Y~~C~~~~~~~~~~-------~~G~~~v~------------ 104 (176)
...+++||.|-+- |+. ....++.|++++|++|+..+.....+ .-|...|+
T Consensus 49 ~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~G 128 (182)
T 3czu_B 49 TIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 128 (182)
T ss_dssp EEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTS
T ss_pred eEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCC
Confidence 4567899999774 332 23678899999999998753111110 01222221
Q ss_pred --ecCCc-cEEEEcC----CCCCCcCCCeEEEEeeCCC
Q 030501 105 --LTEAK-PFYFICG----RGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 105 --L~~~G-~~YFiC~----v~~HC~~GmKl~I~V~~~~ 135 (176)
. ++| .||||++ .++.| ||+.|.|....
T Consensus 129 lEF-~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~ 162 (182)
T 3czu_B 129 KEF-KEGHSYYYISKPIHQHEDRC---LRLKVTVSGKI 162 (182)
T ss_dssp CCC-CTTCEEEEEEEESSSCCCSC---CEEEEEECC--
T ss_pred eeE-eCCCeEEEEEccCCCCCCcc---eEEEEEEecCC
Confidence 2 466 5888875 35666 99999997654
No 38
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.06 E-value=0.015 Score=44.89 Aligned_cols=77 Identities=21% Similarity=0.395 Sum_probs=47.6
Q ss_pred CCceeeCCEEEEe---EeC-------CcceEEEEcccccCcCCCCCccceee---c----CCceEEEec-----------
Q 030501 55 HQHFYVGDWLYFG---FDK-------HKYNVLQVNKTNYEKCGDKDFIENVT---R----GGRDVFNLT----------- 106 (176)
Q Consensus 55 ~~tF~vGD~LvF~---y~~-------~~HsV~~V~~~~Y~~C~~~~~~~~~~---~----~G~~~v~L~----------- 106 (176)
...+++||.|-+- |+. ....++.|++++|++|+......... + .+...+++.
T Consensus 22 ~i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~ 101 (138)
T 1shx_A 22 HIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 101 (138)
T ss_dssp EEEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCC
T ss_pred eEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCce
Confidence 3457789999764 331 25678899999999998754211111 1 122332210
Q ss_pred --CCc-cEEEEcCC-----CCCCcCCCeEEEEeeCC
Q 030501 107 --EAK-PFYFICGR-----GDYCSKGMKIAVHVETD 134 (176)
Q Consensus 107 --~~G-~~YFiC~v-----~~HC~~GmKl~I~V~~~ 134 (176)
++| .||||++- ++-| |||.|.|.+.
T Consensus 102 EF~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~ 134 (138)
T 1shx_A 102 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPT 134 (138)
T ss_dssp CCCTTEEEEEEEEESSCCSCSCC---CEEEEEECCT
T ss_pred eecCCCeEEEEEcCCCCCCCCce---eEEEEEEEcc
Confidence 466 58888642 3446 9999999864
No 39
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=95.97 E-value=0.013 Score=45.25 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=47.5
Q ss_pred ceeeCCEEEEe---EeC---------CcceEEEEcccccCcCCCCCccceee----cCCceEE--------------Eec
Q 030501 57 HFYVGDWLYFG---FDK---------HKYNVLQVNKTNYEKCGDKDFIENVT----RGGRDVF--------------NLT 106 (176)
Q Consensus 57 tF~vGD~LvF~---y~~---------~~HsV~~V~~~~Y~~C~~~~~~~~~~----~~G~~~v--------------~L~ 106 (176)
.+++||.|-+- |+. ....++.|++++|++|+....-.... ..+...+ ..
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF- 101 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF- 101 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC-
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee-
Confidence 56788999775 322 34678999999999998752111111 0122222 22
Q ss_pred CCc-cEEEEcCC-----------CCCCc-CCCeEEEEee
Q 030501 107 EAK-PFYFICGR-----------GDYCS-KGMKIAVHVE 132 (176)
Q Consensus 107 ~~G-~~YFiC~v-----------~~HC~-~GmKl~I~V~ 132 (176)
++| .||||++- +|-|. ..||+.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 466 68888753 46797 4899999985
No 40
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=95.95 E-value=0.016 Score=46.41 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=48.7
Q ss_pred CCceeeCCEEEEe---EeC-------CcceEEEEcccccCcCCCCCccceee---c----CCceEEEec-----------
Q 030501 55 HQHFYVGDWLYFG---FDK-------HKYNVLQVNKTNYEKCGDKDFIENVT---R----GGRDVFNLT----------- 106 (176)
Q Consensus 55 ~~tF~vGD~LvF~---y~~-------~~HsV~~V~~~~Y~~C~~~~~~~~~~---~----~G~~~v~L~----------- 106 (176)
...+++||.|-+- |+. ....++.|++++|++|+..+...... + .|...+++.
T Consensus 51 ~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~ 130 (177)
T 2x11_B 51 HIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF 130 (177)
T ss_dssp EEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCC
T ss_pred eEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCc
Confidence 3567899999774 331 35678899999999998754221111 1 122332210
Q ss_pred --CCc-cEEEEcCC-----CCCCcCCCeEEEEeeCCC
Q 030501 107 --EAK-PFYFICGR-----GDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 107 --~~G-~~YFiC~v-----~~HC~~GmKl~I~V~~~~ 135 (176)
++| .||||++- ++-| |||.|.|.+..
T Consensus 131 EF~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~ 164 (177)
T 2x11_B 131 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 164 (177)
T ss_dssp CCCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTT
T ss_pred cccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCC
Confidence 466 58888642 2346 99999998764
No 41
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=95.16 E-value=0.031 Score=48.84 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=52.1
Q ss_pred cCCceeeCCEEEEeEeCC---cceEEEEcccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCCCCcCCCeEEEE
Q 030501 54 EHQHFYVGDWLYFGFDKH---KYNVLQVNKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGMKIAVH 130 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~---~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~ 130 (176)
...+++.||+++|++.+. .|++..-.......|-. .. ...-.-.|+++++|++||.|..++|=..||+..|.
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i----~p-G~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~ 129 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN----GK-NASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQ 129 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC----ST-TBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec----CC-CCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEEE
Confidence 467889999999988753 37764322222222321 11 00112356678899999999998898889999999
Q ss_pred eeCCCC
Q 030501 131 VETDPP 136 (176)
Q Consensus 131 V~~~~~ 136 (176)
|....+
T Consensus 130 V~~~~~ 135 (447)
T 2dv6_A 130 VLPGNR 135 (447)
T ss_dssp EESSCC
T ss_pred EeCCcc
Confidence 987543
No 42
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=95.12 E-value=0.11 Score=40.83 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=45.2
Q ss_pred cCCceeeCCEEEEeEeCC--cceEEEEcccccCcCCCCCccceeecCC---ceEEEecCCccEEEEcCC-CCCCcCCCeE
Q 030501 54 EHQHFYVGDWLYFGFDKH--KYNVLQVNKTNYEKCGDKDFIENVTRGG---RDVFNLTEAKPFYFICGR-GDYCSKGMKI 127 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~--~HsV~~V~~~~Y~~C~~~~~~~~~~~~G---~~~v~L~~~G~~YFiC~v-~~HC~~GmKl 127 (176)
+...+..|+.+.|..++. -|+...- ++ .++.....| ...++.+++|.||+.|+. -|+-..+|+.
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP---~l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g 162 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVE---GT-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFG 162 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEET---TS-------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEEC---CC-------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEE
Confidence 567888999999988753 3555441 11 111111123 236788999999999997 3344467999
Q ss_pred EEEee
Q 030501 128 AVHVE 132 (176)
Q Consensus 128 ~I~V~ 132 (176)
.|.|.
T Consensus 163 ~V~V~ 167 (168)
T 3s8f_B 163 TIVVK 167 (168)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 43
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=94.56 E-value=0.28 Score=36.96 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=42.1
Q ss_pred CCceee-CCEEEEeEeCC--------cceEEEEcccc----------------cCcCCCCCccce--eecCCc-eEEEec
Q 030501 55 HQHFYV-GDWLYFGFDKH--------KYNVLQVNKTN----------------YEKCGDKDFIEN--VTRGGR-DVFNLT 106 (176)
Q Consensus 55 ~~tF~v-GD~LvF~y~~~--------~HsV~~V~~~~----------------Y~~C~~~~~~~~--~~~~G~-~~v~L~ 106 (176)
..++.. |+++.|.+.+. .|+++..+..+ |-.=+..+.+.. ...+|. .+++++
T Consensus 19 ~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vtf~ 98 (125)
T 3fsa_A 19 AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFD 98 (125)
T ss_dssp EEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEEEE
T ss_pred EEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEEEe
Confidence 555544 99998887743 39999874321 211011111110 112343 344443
Q ss_pred -----CCccEEEEcCCCCCCcCCCeEEEEee
Q 030501 107 -----EAKPFYFICGRGDYCSKGMKIAVHVE 132 (176)
Q Consensus 107 -----~~G~~YFiC~v~~HC~~GmKl~I~V~ 132 (176)
++|.|-|+|+ +|= |||..|.|.
T Consensus 99 ~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 99 VSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp GGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 6799999999 687 999999873
No 44
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.52 E-value=0.12 Score=48.17 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=46.2
Q ss_pred cCCceeeCCEEEEeEeCC------cceEEEEcccccCcCCCCCccceeecCCc---eEEEecCCccEEEEcCC---CCCC
Q 030501 54 EHQHFYVGDWLYFGFDKH------KYNVLQVNKTNYEKCGDKDFIENVTRGGR---DVFNLTEAKPFYFICGR---GDYC 121 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~------~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v---~~HC 121 (176)
...+++.||++.|...+. .|++..-+ .. +......|. ..|+.+++|.|||.|.. ..|
T Consensus 513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~g---------v~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H- 581 (595)
T 1fwx_A 513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YG---------VAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH- 581 (595)
T ss_dssp SEEEEETTCEEEEEEEECCCSTTCCEEEEETT-TT---------EEEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC-
T ss_pred CEEEEECCCEEEEEEEeCCCCCCceeeEEecC-CC---------cceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc-
Confidence 356788999999998752 47775421 11 111112232 36788999999999985 345
Q ss_pred cCCCeEEEEeeCC
Q 030501 122 SKGMKIAVHVETD 134 (176)
Q Consensus 122 ~~GmKl~I~V~~~ 134 (176)
.||+..|.|.+.
T Consensus 582 -~gM~G~IiV~p~ 593 (595)
T 1fwx_A 582 -MEMRGRMLVEPK 593 (595)
T ss_dssp -TTCEEEEEEECC
T ss_pred -cCCEEEEEEEcC
Confidence 499999999864
No 45
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=94.52 E-value=0.082 Score=41.51 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=46.1
Q ss_pred CCceeeCCEEEEe---EeC--------CcceEEEEcccccCcCCCCCccceee---c----CCceEE-------------
Q 030501 55 HQHFYVGDWLYFG---FDK--------HKYNVLQVNKTNYEKCGDKDFIENVT---R----GGRDVF------------- 103 (176)
Q Consensus 55 ~~tF~vGD~LvF~---y~~--------~~HsV~~V~~~~Y~~C~~~~~~~~~~---~----~G~~~v------------- 103 (176)
...+++||.|-+- |+. ....++.|++++|++|+........+ + .+...+
T Consensus 31 ~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G 110 (157)
T 2wo3_B 31 TVEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLG 110 (157)
T ss_dssp EEEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTS
T ss_pred EEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCC
Confidence 3457789999775 321 23458899999999998754211111 0 122222
Q ss_pred -EecCCc-cEEEEcCC-----CCCCcCCCeEEEEeeCCC
Q 030501 104 -NLTEAK-PFYFICGR-----GDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 104 -~L~~~G-~~YFiC~v-----~~HC~~GmKl~I~V~~~~ 135 (176)
.. ++| .||||++- ++-| |||.|.|....
T Consensus 111 ~EF-~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 111 FEF-RPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCC-CTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eee-eCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 12 466 58888853 3456 57888877653
No 46
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.07 E-value=0.17 Score=47.48 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=46.6
Q ss_pred cCCceeeCCEEEEeEeCC------cceEEEEcccccCcCCCCCccceeecCCc---eEEEecCCccEEEEcCCCCCCcC-
Q 030501 54 EHQHFYVGDWLYFGFDKH------KYNVLQVNKTNYEKCGDKDFIENVTRGGR---DVFNLTEAKPFYFICGRGDYCSK- 123 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~~------~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~HC~~- 123 (176)
+..++.+||.+.|..++. .|++..-+ +. +......|. .+|+.++||.|||+|+. .|-.
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG-------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~ 625 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG-------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHAL 625 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT-------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTT
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecC---CC-------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCC
Confidence 467899999999987762 57775421 11 111112232 36778999999999998 4654
Q ss_pred --CCeEEEEeeC
Q 030501 124 --GMKIAVHVET 133 (176)
Q Consensus 124 --GmKl~I~V~~ 133 (176)
+|+..|.|.+
T Consensus 626 Hs~M~G~ViVEP 637 (638)
T 3sbq_A 626 HMEMVGRMMVEP 637 (638)
T ss_dssp CTTCEEEEEEEC
T ss_pred cccceEEEEEec
Confidence 4999999975
No 47
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=93.83 E-value=0.11 Score=40.07 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=47.4
Q ss_pred ceeeCCEEEEeEe---C------CcceEEEEcccccCcCCCCCccceee----cCCceEEEec-------------CCc-
Q 030501 57 HFYVGDWLYFGFD---K------HKYNVLQVNKTNYEKCGDKDFIENVT----RGGRDVFNLT-------------EAK- 109 (176)
Q Consensus 57 tF~vGD~LvF~y~---~------~~HsV~~V~~~~Y~~C~~~~~~~~~~----~~G~~~v~L~-------------~~G- 109 (176)
..++||.|.+-=. . ....++.|++++|+.|+......... ..+...+++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 3457899977522 1 24778999999999998763211110 1122222221 566
Q ss_pred cEEEEcCC-----------CCCCc-CCCeEEEEeeC
Q 030501 110 PFYFICGR-----------GDYCS-KGMKIAVHVET 133 (176)
Q Consensus 110 ~~YFiC~v-----------~~HC~-~GmKl~I~V~~ 133 (176)
+||||++- +|-|. ..||+.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 57788753 35797 58999999864
No 48
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=86.09 E-value=2.4 Score=35.52 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=47.1
Q ss_pred CceeeCCEEEEeEeCC-----cceEEEEcccccCcCCCCCccceeecCCce---EEEecCCccEEEEcCCCC----CCcC
Q 030501 56 QHFYVGDWLYFGFDKH-----KYNVLQVNKTNYEKCGDKDFIENVTRGGRD---VFNLTEAKPFYFICGRGD----YCSK 123 (176)
Q Consensus 56 ~tF~vGD~LvF~y~~~-----~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~~---~v~L~~~G~~YFiC~v~~----HC~~ 123 (176)
.+++.||+|++++.+. .|.+..=... +. +..++.... ..|.+ .|+++++|++||-|...+ |=..
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~-~~--~~~~~~~~i-~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 142 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGAT-GA--LGGAKLTNV-NPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSC-SG--GGGGGGCCB-CTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCC-CC--CCCcceEEe-CCCCEEEEEEECCCCeEEEEecCCCCchhHHHhC
Confidence 4678999999888763 4666442111 10 001111112 23322 567789999999998753 4568
Q ss_pred CCeEEEEeeCCC
Q 030501 124 GMKIAVHVETDP 135 (176)
Q Consensus 124 GmKl~I~V~~~~ 135 (176)
||.-.+.|.+..
T Consensus 143 Gl~G~liV~~~~ 154 (336)
T 1oe1_A 143 GMSGTLMVLPRD 154 (336)
T ss_dssp TCEEEEEEECTT
T ss_pred CCeEEEEEecCc
Confidence 999999998654
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=84.50 E-value=2 Score=35.95 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=47.8
Q ss_pred CceeeCCEEEEeEeCC-----cceEEEEcccccCcCCCCCccceeecCCc---eEEEecCCccEEEEcCCCC-----CCc
Q 030501 56 QHFYVGDWLYFGFDKH-----KYNVLQVNKTNYEKCGDKDFIENVTRGGR---DVFNLTEAKPFYFICGRGD-----YCS 122 (176)
Q Consensus 56 ~tF~vGD~LvF~y~~~-----~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~-----HC~ 122 (176)
.+++.||+|++++.+. .|.+..-.....+.- ...... ..|. ..|+++++|++||-|...+ |=.
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i-~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLI-NPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCB-CTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEe-CCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 4678999999988864 366643211111100 111111 2232 2577789999999998864 667
Q ss_pred CCCeEEEEeeCCC
Q 030501 123 KGMKIAVHVETDP 135 (176)
Q Consensus 123 ~GmKl~I~V~~~~ 135 (176)
.||...+.|.+..
T Consensus 142 ~Gl~G~~iV~~~~ 154 (333)
T 1mzy_A 142 SGMAGCIMVLPRD 154 (333)
T ss_dssp TTCEEEEEEECTT
T ss_pred CCCEEEEEEccCc
Confidence 8999999998643
No 50
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=83.91 E-value=6 Score=33.89 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=52.1
Q ss_pred eEEEEcCCCCCCCCCCCcccc----ccCCceeeCCEEEEeEeCC--cceEEEEcccccCcCCCCCccceeecCCc---eE
Q 030501 32 VLHRVGGGKYTWKPNVNFTQW----AEHQHFYVGDWLYFGFDKH--KYNVLQVNKTNYEKCGDKDFIENVTRGGR---DV 102 (176)
Q Consensus 32 ~~~~VGg~~~GW~~~~~Y~~W----A~~~tF~vGD~LvF~y~~~--~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~---~~ 102 (176)
.+++|=|-.+.|.. .|.+- .+...+.+|..+.|.-++. -|+... . .+ .++...-.|. ..
T Consensus 127 ltIkVig~QW~W~f--~Ypd~~i~t~n~l~lP~g~~V~~~lTS~DViHsf~I-P--~l-------g~k~DaiPGr~n~~~ 194 (315)
T 1fft_B 127 ITIEVVSMDWKWFF--IYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFI-P--RL-------GSQIYAMAGMQTRLH 194 (315)
T ss_dssp CEEEEECCTTSCEE--ECTTTCCEEESBCCCCSSSEEEEEECBSSSCEEEEE-G--GG-------TEEEEECBTSCEEEE
T ss_pred eeEEEeeeeccEEE--ecCCCcccccceEEEeCCCEEEEEEEeCCccceeee-c--cc-------CcEEeecCCcceeeE
Confidence 34444444577763 23322 2456778899999988853 244443 1 11 1111111222 35
Q ss_pred EEecCCccEEEEcCCCCCCcC---CCeEEEEee
Q 030501 103 FNLTEAKPFYFICGRGDYCSK---GMKIAVHVE 132 (176)
Q Consensus 103 v~L~~~G~~YFiC~v~~HC~~---GmKl~I~V~ 132 (176)
++.+++|.||..|+. -|.. .|++.|.|.
T Consensus 195 ~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv 225 (315)
T 1fft_B 195 LIANEPGTYDGISAS--YSGPGFSGMKFKAIAT 225 (315)
T ss_dssp EECCSCBCCEEBCCS--CCSTTTTTCCEECCBC
T ss_pred EecCCCeEEEEeccc--cchhhHHhccceEEEe
Confidence 788999999999997 4765 499998887
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=83.31 E-value=1.8 Score=36.37 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=45.9
Q ss_pred CCceeeCCEEEEeEeCC-----cceEEEEcccccCcCCCCCccceeecCCc--eEEEecCCccEEEEcCCC---CCCcCC
Q 030501 55 HQHFYVGDWLYFGFDKH-----KYNVLQVNKTNYEKCGDKDFIENVTRGGR--DVFNLTEAKPFYFICGRG---DYCSKG 124 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~-----~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~--~~v~L~~~G~~YFiC~v~---~HC~~G 124 (176)
..+++.||++++++.+. .|++.-=-....|. ..... ....++. ..|+.+++|++||-|... .|=..|
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~~~~-~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G 147 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GAAAT-FTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GTTTT-CBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CCcce-eecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence 45788999999988754 35553210000110 00000 1111222 256778999999999763 455689
Q ss_pred CeEEEEeeCCC
Q 030501 125 MKIAVHVETDP 135 (176)
Q Consensus 125 mKl~I~V~~~~ 135 (176)
|...|.|.+..
T Consensus 148 l~G~~iV~~~~ 158 (327)
T 1kbv_A 148 MYGLILVEPKE 158 (327)
T ss_dssp CEEEEEEECTT
T ss_pred eEEEEEEecCC
Confidence 99999998754
No 52
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=82.46 E-value=10 Score=32.26 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=25.6
Q ss_pred EEEecCCccEEEEcCCCCCCcC---CCeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSK---GMKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~---GmKl~I~V~~~ 134 (176)
.++.++||.||..|+.- |.. .|++.|.|.+.
T Consensus 232 ~~~~~~~G~y~g~CsE~--CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSEL--CGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCSC--CSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEcccc--cCcCccCCeeEEEEEcH
Confidence 57889999999999984 654 49999998765
No 53
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=80.46 E-value=2 Score=37.30 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCceeeCCEEEEeEeCC-----cceEEEEcccccCcCCCCCcc-ceeecCCc--eEEEecCCccEEEEcC---CCCCCcC
Q 030501 55 HQHFYVGDWLYFGFDKH-----KYNVLQVNKTNYEKCGDKDFI-ENVTRGGR--DVFNLTEAKPFYFICG---RGDYCSK 123 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~-----~HsV~~V~~~~Y~~C~~~~~~-~~~~~~G~--~~v~L~~~G~~YFiC~---v~~HC~~ 123 (176)
..+++.||++++++.+. .|++..=-....+. .+. .....++. ..|+.+++|++||-|- ...|=..
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG----~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~ 136 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG----GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIAN 136 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG----GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC----CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhC
Confidence 44678899999988764 45554310000010 010 01111222 2567789999999994 3456678
Q ss_pred CCeEEEEeeCCC
Q 030501 124 GMKIAVHVETDP 135 (176)
Q Consensus 124 GmKl~I~V~~~~ 135 (176)
||...+.|.+..
T Consensus 137 Gl~G~~iv~~~~ 148 (442)
T 2zoo_A 137 GMYGLILVEPKE 148 (442)
T ss_dssp TCEEEEEEECTT
T ss_pred ccEEEEEEeCCC
Confidence 999999998654
No 54
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=75.24 E-value=23 Score=29.26 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=24.9
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.+..+++|.||..|+.- |..| |++.|.|.+
T Consensus 214 ~~~~~~~G~y~g~Cse~--CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSEL--CGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCCSC--CSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEChHh--cccCcccCeEEEEEEc
Confidence 57889999999999984 7655 999888875
No 55
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=73.50 E-value=9.9 Score=31.18 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=46.7
Q ss_pred CCceeeCCEEEEeEeCC---cceEEEE--cccccCcCC-C-CCccceeecCCc--eEEEecCCccEEEEcCCC---CCCc
Q 030501 55 HQHFYVGDWLYFGFDKH---KYNVLQV--NKTNYEKCG-D-KDFIENVTRGGR--DVFNLTEAKPFYFICGRG---DYCS 122 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~---~HsV~~V--~~~~Y~~C~-~-~~~~~~~~~~G~--~~v~L~~~G~~YFiC~v~---~HC~ 122 (176)
..+++.||++++++.+. .|++.-= .....|.=. . ..++ ..++. ..|+.+++|++||-|-.. .|=.
T Consensus 67 ~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p~~~~~~i---~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~ 143 (288)
T 3gdc_A 67 TLWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTPGIGAGSI---APGQSFTYEFDATPFGTHLYHCHQSPLAPHIA 143 (288)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCTTSTTCSB---CTTCEEEEEEECCSCEEEEEECCCSSHHHHHH
T ss_pred cEEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCCCccceeE---CCCCEEEEEEEcCCCccEEEEecCcchHHHHh
Confidence 35678999999988753 3444321 111111100 0 0111 11222 257778999999999886 3566
Q ss_pred CCCeEEEEeeCCCC
Q 030501 123 KGMKIAVHVETDPP 136 (176)
Q Consensus 123 ~GmKl~I~V~~~~~ 136 (176)
.||.-.|.|.+..+
T Consensus 144 ~Gl~G~liV~~~~~ 157 (288)
T 3gdc_A 144 KGLYGGFIVEPKEG 157 (288)
T ss_dssp TTCEEEEEEECSSC
T ss_pred CcCeEEEEEeCCcc
Confidence 89999999987543
No 56
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=69.81 E-value=5.5 Score=30.18 Aligned_cols=36 Identities=17% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCceeeCCEEEEe---EeC--------CcceEEEEcccccCcCCCCC
Q 030501 55 HQHFYVGDWLYFG---FDK--------HKYNVLQVNKTNYEKCGDKD 90 (176)
Q Consensus 55 ~~tF~vGD~LvF~---y~~--------~~HsV~~V~~~~Y~~C~~~~ 90 (176)
...+++||.|-+- |+. ....++.|++++|++|+..+
T Consensus 21 ~v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~ 67 (132)
T 3hei_B 21 TIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS 67 (132)
T ss_dssp EEEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred eEEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence 4456789999663 322 24678899999999998754
No 57
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=69.02 E-value=5 Score=33.49 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=29.6
Q ss_pred EEEecCCccEEEEcCCCCCC-cCCCeEEEEeeCCC
Q 030501 102 VFNLTEAKPFYFICGRGDYC-SKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 135 (176)
.++.+++|.++|.|....|+ +.||...+.|....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKW 320 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCC
Confidence 56677899999999998898 89999999998654
No 58
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=69.00 E-value=29 Score=28.03 Aligned_cols=30 Identities=17% Similarity=0.404 Sum_probs=24.6
Q ss_pred EEEecCCccEEEEcCCCCCCcCC---CeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKG---MKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 133 (176)
.++.+++|.||..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5778899999999988 47765 898888865
No 59
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=68.76 E-value=10 Score=31.53 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=46.9
Q ss_pred CceeeCCEEEEeEeCC-----cceEEEEcccccCcCCCCCccceeecCCc---eEEEecCCccEEEEcCCCC----CCcC
Q 030501 56 QHFYVGDWLYFGFDKH-----KYNVLQVNKTNYEKCGDKDFIENVTRGGR---DVFNLTEAKPFYFICGRGD----YCSK 123 (176)
Q Consensus 56 ~tF~vGD~LvF~y~~~-----~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~----HC~~ 123 (176)
.+++.||++++++.+. .|.+..-.....+ + ..+.... ..|. ..|+++++|++||-|...+ |=..
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~-~~~~~~i-~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~ 148 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--G-GGALTQV-NPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCB-CTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--C-CccceEe-CCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhC
Confidence 4678999999988864 3655431111000 0 0111111 2232 2577789999999998864 5668
Q ss_pred CCeEEEEeeCCC
Q 030501 124 GMKIAVHVETDP 135 (176)
Q Consensus 124 GmKl~I~V~~~~ 135 (176)
||.-.+.|.+..
T Consensus 149 Gl~G~~iV~~~~ 160 (340)
T 2bw4_A 149 GMNGAIMVLPRD 160 (340)
T ss_dssp TCEEEEEEECTB
T ss_pred cCEEEEEEccCc
Confidence 999999987643
No 60
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=67.40 E-value=2.7 Score=29.50 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=12.8
Q ss_pred CCceeeCCEEEEe-EeCC
Q 030501 55 HQHFYVGDWLYFG-FDKH 71 (176)
Q Consensus 55 ~~tF~vGD~LvF~-y~~~ 71 (176)
++.|++||.|+|+ |+.+
T Consensus 35 Dr~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 35 DRNFQVGDILILEEYMNG 52 (83)
T ss_dssp CSCCCTTCEEEEEEEETT
T ss_pred ccCCCCCCEEEEEEccCC
Confidence 4569999999995 6543
No 61
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=67.13 E-value=11 Score=30.49 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=40.9
Q ss_pred CCceeeCCEEEEeEeCC--cceEEEEcccccCcCCCCCccceeecCCc---eEEEecCCccEEEEcCCCCCCcC---CCe
Q 030501 55 HQHFYVGDWLYFGFDKH--KYNVLQVNKTNYEKCGDKDFIENVTRGGR---DVFNLTEAKPFYFICGRGDYCSK---GMK 126 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--~HsV~~V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~HC~~---GmK 126 (176)
...+.+|+.+.|.-++. -|+...- .+ .++...-.|. ..+..+++|.||..|+.- |.. .|+
T Consensus 42 ~l~lP~g~~V~~~lTS~DViHSF~IP---~l-------gvK~daiPGr~n~l~~~~~~pG~y~g~CsE~--CG~~Hs~M~ 109 (205)
T 1cyx_A 42 EIAFPANTPVYFKVTSNSVMHSFFIP---RL-------GSQIYAMAGMQTRLHLIANEPGTYDGICAEI--CGPGHSGMK 109 (205)
T ss_dssp EEEEETTSCEEEEEEESSSCEEEEEG---GG-------TEEEEECTTCCEEEEECCSSSEEEEEEECSC--CSTTSTTCC
T ss_pred eEEEeCCCEEEEEEecCCceeeEEec---cc-------CcEEEecCCceEEEEEEeCCCeEEEEEcccc--cccchhhce
Confidence 45667788888887752 2444331 11 0111111222 356778999999999984 754 499
Q ss_pred EEEEee
Q 030501 127 IAVHVE 132 (176)
Q Consensus 127 l~I~V~ 132 (176)
+.|.|.
T Consensus 110 ~~v~vv 115 (205)
T 1cyx_A 110 FKAIAT 115 (205)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999988
No 62
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=59.81 E-value=17 Score=32.64 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=48.8
Q ss_pred CCceeeCCEEEEeEeCCc----ceEEE--E--cccc-cCc-CCCC-CccceeecCCc---eEEEecCCccEEEEcCCCCC
Q 030501 55 HQHFYVGDWLYFGFDKHK----YNVLQ--V--NKTN-YEK-CGDK-DFIENVTRGGR---DVFNLTEAKPFYFICGRGDY 120 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~~----HsV~~--V--~~~~-Y~~-C~~~-~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~H 120 (176)
..+++.||+|+.++.+.- +++.- + ..+. .|. -..+ .++ ..|. ..|+++++|++||-|-...+
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~I----~PG~s~tY~f~~~~~GT~wYHsH~~~q 110 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAI----NPGETFFYNFTVDNPGTFFYHGHLGMQ 110 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCCB----CTTCEEEEEEECCSCEEEEEEECSTTT
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccCCc----CCCCeEEEEEECCCCEEEEEEECchhH
Confidence 557889999999988532 33321 1 1111 111 0000 011 1232 26778899999999999888
Q ss_pred CcCCCeEEEEeeCCC
Q 030501 121 CSKGMKIAVHVETDP 135 (176)
Q Consensus 121 C~~GmKl~I~V~~~~ 135 (176)
=..||...+.|....
T Consensus 111 ~~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 111 RSAGLYGSLIVDPPQ 125 (552)
T ss_dssp GGGTCEEEEEEECCT
T ss_pred HhccCeeeEEEeCCc
Confidence 889999999998864
No 63
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=56.88 E-value=6.3 Score=32.86 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=29.7
Q ss_pred EEEecCCccEEEEcCCCCCC-cCCCeEEEEeeCCC
Q 030501 102 VFNLTEAKPFYFICGRGDYC-SKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 135 (176)
.+..+++|.++|.|-...|+ +.||.-.+.|....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 46677899999999999999 99999999998744
No 64
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=55.40 E-value=16 Score=32.98 Aligned_cols=33 Identities=3% Similarity=0.072 Sum_probs=29.5
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 134 (176)
.|+++++|++||-|-...|=..||.-.+.|...
T Consensus 126 ~f~~~q~GT~wYH~H~~~q~~~Gl~G~liV~~~ 158 (559)
T 2q9o_A 126 RWRARQYGTSWYHSHFSAQYGNGVVGTIQINGP 158 (559)
T ss_dssp EEECCSCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEECCCCEEEEEEEcccchhcCCceEEEEecCC
Confidence 678889999999999988888999999999864
No 65
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=54.66 E-value=21 Score=32.03 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=48.4
Q ss_pred CCceeeCCEEEEeEeCCc---------ceEEEEcccccCc-CCCC-CccceeecCCc---eEEEec-CCccEEEEcCCCC
Q 030501 55 HQHFYVGDWLYFGFDKHK---------YNVLQVNKTNYEK-CGDK-DFIENVTRGGR---DVFNLT-EAKPFYFICGRGD 119 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~~---------HsV~~V~~~~Y~~-C~~~-~~~~~~~~~G~---~~v~L~-~~G~~YFiC~v~~ 119 (176)
..+++.||+|+.++.+.- |.+.+-.....|. -..+ .++. .|. ..|+++ ++|++||-|-...
T Consensus 35 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~pI~----PG~~~~Y~f~~~~~~GT~wYH~H~~~ 110 (534)
T 1zpu_A 35 DITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIA----PGSTMLYNFTVDYNVGTYWYHSHTDG 110 (534)
T ss_dssp CEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCCBC----TTCEEEEEEECSSCCEEEEEECCSSS
T ss_pred cEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCCcC----CCCeEEEEEEeCccceeEEEEEcCcc
Confidence 567889999999998642 2222210001111 0000 0121 222 267777 8999999999988
Q ss_pred CCcCCCeEEEEeeCCC
Q 030501 120 YCSKGMKIAVHVETDP 135 (176)
Q Consensus 120 HC~~GmKl~I~V~~~~ 135 (176)
|=..||...+.|....
T Consensus 111 q~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 111 QYEDGMKGLFIIKDDS 126 (534)
T ss_dssp GGGGTCEEEEEEECTT
T ss_pred cccCcceeeEEeCCCC
Confidence 8889999999998754
No 66
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=54.50 E-value=25 Score=31.38 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=28.8
Q ss_pred EEEe-cCCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 102 VFNL-TEAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
.|++ +++|++||-|-...|=..|+...+.|....
T Consensus 97 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 131 (495)
T 3t6v_A 97 NFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPN 131 (495)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCceeeeeccchhHHhcCceEEEEEcCcc
Confidence 5777 679999999999888889999999997643
No 67
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=52.94 E-value=27 Score=31.18 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=28.6
Q ss_pred EEEe-cCCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 102 VFNL-TEAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
.|++ +++|++||-|-...|=..|+...+.|....
T Consensus 96 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 130 (499)
T 3pxl_A 96 DFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN 130 (499)
T ss_dssp EEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEcCCCCceeeeeccchhHHhccceeEEEEcCCc
Confidence 5777 679999999999888889999999997643
No 68
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=52.42 E-value=9 Score=34.89 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=43.5
Q ss_pred CCceeeCCEEEEeEeCC--cceEEEE-cccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCCCCcCCC-eEEEE
Q 030501 55 HQHFYVGDWLYFGFDKH--KYNVLQV-NKTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCSKGM-KIAVH 130 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~--~HsV~~V-~~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~~Gm-Kl~I~ 130 (176)
+.-++-|-.|.|.=-.. ...++.+ +-++...|...........= +....| ++|.|||..+.-.-|++|- |+.|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFEL-GKMYSV-ESGDYFMTASTTELCNDNNLRIHVH 489 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCcccc-cceEec-CCCceEecCChHHHHhCCceeEEEE
Confidence 33456677777632221 1112222 33444568764321111111 133344 6999999999999999998 99998
Q ss_pred ee
Q 030501 131 VE 132 (176)
Q Consensus 131 V~ 132 (176)
|.
T Consensus 490 ~~ 491 (491)
T 3l6w_A 490 VD 491 (491)
T ss_pred eC
Confidence 84
No 69
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=51.52 E-value=11 Score=31.63 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=44.3
Q ss_pred CCceeeCCEEEEeEeCC---cceEEEE--ccc---ccCc-CCC-CCccceeecCCc---eEEEecCCccEEEEcCCCCC-
Q 030501 55 HQHFYVGDWLYFGFDKH---KYNVLQV--NKT---NYEK-CGD-KDFIENVTRGGR---DVFNLTEAKPFYFICGRGDY- 120 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~---~HsV~~V--~~~---~Y~~-C~~-~~~~~~~~~~G~---~~v~L~~~G~~YFiC~v~~H- 120 (176)
..+++.||+|++++.+. .|++.-= ... ..|. -.. ..++ ..|. ..|+.+++|++||-|....+
T Consensus 35 ~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~~i----~PG~~~~y~f~~~~~Gt~wYH~H~~~~~ 110 (318)
T 3g5w_A 35 LIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAI----EPGDTFTYKFKAEPAGTMWYHCHVNVNE 110 (318)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBCCB----CTTCEEEEEEECCSCEEEEEECCSSHHH
T ss_pred eEEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccccC----CCCCEEEEEEEcCCCEEEEEEccCChhh
Confidence 45778999999998853 3444321 110 1111 000 0011 1222 26778899999998887422
Q ss_pred C--cCCCeEEEEeeCCC
Q 030501 121 C--SKGMKIAVHVETDP 135 (176)
Q Consensus 121 C--~~GmKl~I~V~~~~ 135 (176)
. ..||...+.|.+..
T Consensus 111 ~~~~~Gl~G~lIV~~~~ 127 (318)
T 3g5w_A 111 HVTMRGMWGPLIVEPKN 127 (318)
T ss_dssp HHHHSCCEEEEEEECSS
T ss_pred hhccCCCEEEEEEcCCC
Confidence 1 26999999887654
No 70
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=49.64 E-value=18 Score=30.34 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred ceeeCCEEEEeEeCC--------cceEEEEcccccCc-CCCCCccceeecCCceEEEecCCccEEEEcCCCC--CCc-CC
Q 030501 57 HFYVGDWLYFGFDKH--------KYNVLQVNKTNYEK-CGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGD--YCS-KG 124 (176)
Q Consensus 57 tF~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~-C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~--HC~-~G 124 (176)
+++.||++++++.+. .|.+.+......|. -..+.........=+..|+++++|++||-|.... |=. .|
T Consensus 38 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~~~~G 117 (339)
T 2zwn_A 38 HVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRG 117 (339)
T ss_dssp EEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHTTTSC
T ss_pred EEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccCccCCCCeEEEEEECCCCEEEEEEecCCchhhhhcCC
Q ss_pred CeEEEEeeCCCCCC
Q 030501 125 MKIAVHVETDPPPP 138 (176)
Q Consensus 125 mKl~I~V~~~~~~~ 138 (176)
|...+.|.+..+.+
T Consensus 118 l~G~liV~p~~~~~ 131 (339)
T 2zwn_A 118 MWGPLIVDPKQPLP 131 (339)
T ss_dssp CEEEEEEECSSCCT
T ss_pred ceEeEEecCCCccc
No 71
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=49.49 E-value=6.4 Score=32.34 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=28.1
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 133 (176)
.+..+.||.+.|.|-...|=+.||...+.|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 45567899999999999999999999999864
No 72
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=48.68 E-value=2.6 Score=35.04 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=20.3
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 134 (176)
.+..+++|.++|.|-...|-..||...+.|.+.
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 456678999999999999999999999888753
No 73
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=44.83 E-value=33 Score=31.43 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=29.2
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 134 (176)
.|+++++|++||-|-.+.+=..|+...|.|...
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 678889999999999988888999999999864
No 74
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=41.57 E-value=18 Score=30.18 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=28.6
Q ss_pred EEEecCCccEEEEcCCCCCC-cCCCeEEEEeeCCC
Q 030501 102 VFNLTEAKPFYFICGRGDYC-SKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 135 (176)
.|..+++|.++|.|....|| ..||...+.+....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 46667899999999999998 78998888887653
No 75
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=41.16 E-value=28 Score=34.09 Aligned_cols=76 Identities=12% Similarity=-0.013 Sum_probs=51.4
Q ss_pred cCCceeeCCEEEEeEeC-----CcceEEEEc------ccccCcCCCCCccceeecCCceEEEecCCccEEEEcCCCCCCc
Q 030501 54 EHQHFYVGDWLYFGFDK-----HKYNVLQVN------KTNYEKCGDKDFIENVTRGGRDVFNLTEAKPFYFICGRGDYCS 122 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~~-----~~HsV~~V~------~~~Y~~C~~~~~~~~~~~~G~~~v~L~~~G~~YFiC~v~~HC~ 122 (176)
...++..||+|+..... .-|++.+-. ...++.|... .. .+-+..++.+.+|++|+-|-++.|=.
T Consensus 632 P~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~----pg-~~~t~~~~~~~~Gt~~~h~h~~~~~~ 706 (1065)
T 2j5w_A 632 PGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLF----PQ-TSLTLHMWPDTEGTFNVECLTTDHYT 706 (1065)
T ss_dssp CCCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEEC----TT-CEEEEEECCCSCEEEEEEECSHHHHH
T ss_pred CceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeec----CC-ceEEEEEecCCCeEEEEecCCCcccC
Confidence 36789999999988774 246665521 1223334321 10 01123567779999999999999999
Q ss_pred CCCeEEEEeeCC
Q 030501 123 KGMKIAVHVETD 134 (176)
Q Consensus 123 ~GmKl~I~V~~~ 134 (176)
.||+..+.|...
T Consensus 707 ~Gm~g~~~V~~~ 718 (1065)
T 2j5w_A 707 GGMKQKYTVNQC 718 (1065)
T ss_dssp TTCEEEEEEECC
T ss_pred CCcEEEEEEcCC
Confidence 999999999764
No 76
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=40.23 E-value=29 Score=30.36 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=45.7
Q ss_pred CceeeCCEEEEeEeCC---cceEEE----EcccccCcCCCCCccceeecCCc---eEEEecC-CccEEEEcCC----CCC
Q 030501 56 QHFYVGDWLYFGFDKH---KYNVLQ----VNKTNYEKCGDKDFIENVTRGGR---DVFNLTE-AKPFYFICGR----GDY 120 (176)
Q Consensus 56 ~tF~vGD~LvF~y~~~---~HsV~~----V~~~~Y~~C~~~~~~~~~~~~G~---~~v~L~~-~G~~YFiC~v----~~H 120 (176)
.+++.||+|+.++.+. .+++.- +.. +.|. ....++ ..|. ..|++++ +|++||-|-. ..|
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~-~~DG-~~~~~i----~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q 125 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQVPG-PLMG-GPARMM----SPNADWAPVLPIRQNAATLWYHANTPNRTAQQ 125 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCG-GGSC-SGGGCB----CTTCEECCEEECCSCSEEEEEEECCTTTHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccCCC-CCCC-CCcCcC----CCCCeEEEEEEcCCCCcceEEecCCCCchhhh
Confidence 3578999999999864 344421 111 1111 000111 1222 3688886 9999999987 345
Q ss_pred CcCCCeEEEEeeCCC
Q 030501 121 CSKGMKIAVHVETDP 135 (176)
Q Consensus 121 C~~GmKl~I~V~~~~ 135 (176)
=..||-..+.|.+..
T Consensus 126 ~~~Gl~G~liV~~~~ 140 (451)
T 2uxt_A 126 VYNGLAGMWLVEDEV 140 (451)
T ss_dssp HHTTCEEEEEEECHH
T ss_pred HhhcceEEEEEecCc
Confidence 668999999998754
No 77
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=38.97 E-value=14 Score=27.78 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=19.8
Q ss_pred ccCCceeeCCEEEEeEeCCcceEEEE
Q 030501 53 AEHQHFYVGDWLYFGFDKHKYNVLQV 78 (176)
Q Consensus 53 A~~~tF~vGD~LvF~y~~~~HsV~~V 78 (176)
+..+..++||.++|++.....-+++|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 57899999999999998643235554
No 78
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=38.64 E-value=11 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=16.6
Q ss_pred ccCCceeeCCEEEEeEeCC
Q 030501 53 AEHQHFYVGDWLYFGFDKH 71 (176)
Q Consensus 53 A~~~tF~vGD~LvF~y~~~ 71 (176)
+..+..+.||.|+|++...
T Consensus 73 v~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS
T ss_pred HHHcCCCCCCEEEEEEcCC
Confidence 5688999999999999864
No 79
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=38.61 E-value=0.41 Score=26.37 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=14.2
Q ss_pred CCceeeCCEEEEeEeCCcc
Q 030501 55 HQHFYVGDWLYFGFDKHKY 73 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~~H 73 (176)
++.|.+.|.|.|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 6789999999999986544
No 80
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=37.88 E-value=10 Score=28.58 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=30.5
Q ss_pred CCCCCCCccccccCCceeeCCEEEEeEeC-----------CcceEEEEcccccC
Q 030501 42 TWKPNVNFTQWAEHQHFYVGDWLYFGFDK-----------HKYNVLQVNKTNYE 84 (176)
Q Consensus 42 GW~~~~~Y~~WA~~~tF~vGD~LvF~y~~-----------~~HsV~~V~~~~Y~ 84 (176)
||. ++||.+...-+..++||.+.|-.++ +.-.+.+|..+.|.
T Consensus 20 g~~-GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 20 NVW-GVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEE-EECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred Ccc-ccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 566 6699998877799999999887653 23455677556665
No 81
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=37.14 E-value=34 Score=30.48 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=45.1
Q ss_pred CCceeeCCEEEEeEeCC---cce-----EEEEcc-cccCcCCCCCccceeecCCc--eEEEecC--CccEEEEcCCC---
Q 030501 55 HQHFYVGDWLYFGFDKH---KYN-----VLQVNK-TNYEKCGDKDFIENVTRGGR--DVFNLTE--AKPFYFICGRG--- 118 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~---~Hs-----V~~V~~-~~Y~~C~~~~~~~~~~~~G~--~~v~L~~--~G~~YFiC~v~--- 118 (176)
..+++.||+|+.++.+. .++ +.+-+. .+...| ++. .++. ..|++.+ +|++||-|-..
T Consensus 83 tIr~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~pq~----~I~---PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t 155 (481)
T 3zx1_A 83 KIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHD----PIL---AGEERIYRFEIPQDSAGTYWYHPHPHYTA 155 (481)
T ss_dssp BEEEETTCEEEEEEEECSSSCBCCEEETCCCCGGGSCCTTS----CBC---TTCEEEEEEECCTTCCEEEEEECCCTTTH
T ss_pred eEEEECCcEEEEEEEeCCCCCeeEEecCcccCCccCCCccC----cCC---CCCeEEEEEeCCCCCCceEEEeecCCCcc
Confidence 45788999999999864 222 222111 111112 221 1222 2566665 79999988762
Q ss_pred -CCCcCCCeEEEEeeCCCCC
Q 030501 119 -DYCSKGMKIAVHVETDPPP 137 (176)
Q Consensus 119 -~HC~~GmKl~I~V~~~~~~ 137 (176)
.|=..|+.-.+.|.....+
T Consensus 156 ~~q~~~GL~G~lIV~~~~~~ 175 (481)
T 3zx1_A 156 SKQVFMGLAGAFVIKAKKDA 175 (481)
T ss_dssp HHHHHTTCCEEEEEECSSCT
T ss_pred hhhhhccceEEEEEcCcccc
Confidence 3445799999999876543
No 82
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=35.74 E-value=23 Score=28.71 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=26.5
Q ss_pred CCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 107 EAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 107 ~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
.+|.++|-|-...|=..||...+.|.+..
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~ 267 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPD 267 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCC
Confidence 59999999999999999999999998764
No 83
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=33.11 E-value=11 Score=26.58 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=16.1
Q ss_pred cCCccEEEEcCCCCCC-cCCCeEEEEeeCCCCCCC
Q 030501 106 TEAKPFYFICGRGDYC-SKGMKIAVHVETDPPPPT 139 (176)
Q Consensus 106 ~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~~~~~ 139 (176)
.+.|.|| |.+...- ..+.++.+.|.+.+++|.
T Consensus 85 ~Dsg~Y~--C~~~~~~~~~~~~v~L~V~~~~~~~~ 117 (124)
T 2nms_A 85 TDADTYW--CGIEKTGNDLGVTVQVTIDPAPVTQE 117 (124)
T ss_dssp GGCEEEE--EEEEETTEEEEEEEEEEEECCC----
T ss_pred HHCEEEE--EEEEcCCCCccEEEEEEEeCCCcCCC
Confidence 3566654 6653111 345678888877644443
No 84
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=32.12 E-value=33 Score=29.49 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=29.2
Q ss_pred EEEecCCccEEEEcCCCCCC-cCCCeEEEEeeCCCC
Q 030501 102 VFNLTEAKPFYFICGRGDYC-SKGMKIAVHVETDPP 136 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~~ 136 (176)
.++.+++|.|++.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 46778899999999998887 789988888877654
No 85
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=32.11 E-value=23 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=21.0
Q ss_pred CCCCC---CCCccccccCCceeeCCEEEEeEeC
Q 030501 41 YTWKP---NVNFTQWAEHQHFYVGDWLYFGFDK 70 (176)
Q Consensus 41 ~GW~~---~~~Y~~WA~~~tF~vGD~LvF~y~~ 70 (176)
.+|.. .....+.+.-..+++||.+.|.+..
T Consensus 28 l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~ 60 (82)
T 2l55_A 28 AQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRL 60 (82)
T ss_dssp TTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEE
T ss_pred cCCCceEEEEEcCChhHhhcCCCCCEEEEEEEE
Confidence 56742 2223445567789999999999985
No 86
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=30.55 E-value=33 Score=32.44 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=24.1
Q ss_pred CCccEEEEcCCCC--CCcCCCeEEEEeeCCC
Q 030501 107 EAKPFYFICGRGD--YCSKGMKIAVHVETDP 135 (176)
Q Consensus 107 ~~G~~YFiC~v~~--HC~~GmKl~I~V~~~~ 135 (176)
.+|++||-|.+.. |...||...|.|.+..
T Consensus 269 ~~Gt~wYHsh~~~~~q~~~GL~G~liV~~~~ 299 (770)
T 2r7e_B 269 DCKAWAYSSDVDLEKDVHSGLIGPLLVCHTN 299 (770)
T ss_dssp SEEEEEECCCSSSSHHHHTSCCEEEEEECST
T ss_pred CCeeEEeeccCCcHHHHhCCceeeEEECCCc
Confidence 6799999998865 6789999999888754
No 87
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=30.54 E-value=24 Score=29.15 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=26.7
Q ss_pred cCCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 106 TEAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 106 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
+.||.+.|-|-+..|=+.||...+.|....
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~ 289 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNAD 289 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCC
Confidence 358999999999999999999999998764
No 88
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=30.42 E-value=1.3e+02 Score=26.72 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=28.6
Q ss_pred EEEe-cCCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 102 VFNL-TEAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
.|++ +++|++||-|-...|=..||...+.|....
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 5674 579999999999888889999999998653
No 89
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=29.46 E-value=20 Score=24.82 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.1
Q ss_pred cccccCCceeeCCEEEEeEeC
Q 030501 50 TQWAEHQHFYVGDWLYFGFDK 70 (176)
Q Consensus 50 ~~WA~~~tF~vGD~LvF~y~~ 70 (176)
.+.+.-..+++||.+.|.+..
T Consensus 54 ~~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 54 TPQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp CTTCEECCCCTTCEEEEEEEE
T ss_pred CChhhhhcCCCCCEEEEEEEE
Confidence 445556789999999999985
No 90
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=29.35 E-value=22 Score=30.55 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=28.8
Q ss_pred cc-cCCceeeCCEE------EEeEeCCcceEEEE-cccccCcCCC
Q 030501 52 WA-EHQHFYVGDWL------YFGFDKHKYNVLQV-NKTNYEKCGD 88 (176)
Q Consensus 52 WA-~~~tF~vGD~L------vF~y~~~~HsV~~V-~~~~Y~~C~~ 88 (176)
|+ +...++.||+- ||||...+..|... +...|..|+.
T Consensus 38 w~idgs~v~~GDtFtL~MP~VfKf~~~~t~v~L~a~G~~yAtC~~ 82 (312)
T 2y7l_A 38 WSLNSTTADPGDTFTLILPCVFKFITTQTSVDLTADGVSYATCDF 82 (312)
T ss_dssp EEEETTTCCTTCEEEEEEETEEEESSSCSEEEEEETTEEEEEEEE
T ss_pred EEEccCcCCCCCEEEEecccEEEEccCCceEEEecCCeEEEEEec
Confidence 54 56789999997 89998777777654 7778888875
No 91
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=28.90 E-value=75 Score=28.02 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.2
Q ss_pred EEEe-cCCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 102 VFNL-TEAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
.|++ +++|++||-|-...|=..||...+.|....
T Consensus 96 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 130 (503)
T 1hfu_A 96 KFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN 130 (503)
T ss_dssp EECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCccEEEEecchhhhhCcceeeEEEcCCC
Confidence 5663 569999999999888889999999998653
No 92
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=28.90 E-value=16 Score=26.75 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=10.8
Q ss_pred CCceeeCCEEEEe
Q 030501 55 HQHFYVGDWLYFG 67 (176)
Q Consensus 55 ~~tF~vGD~LvF~ 67 (176)
-+.+++||.|+|+
T Consensus 32 ~~~i~vGD~I~f~ 44 (113)
T 1xne_A 32 LKDIKRGDKIIFN 44 (113)
T ss_dssp TTTCCTTCEEEET
T ss_pred hhccCCCCEEEEc
Confidence 4567999999994
No 93
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=28.83 E-value=78 Score=27.28 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=43.5
Q ss_pred CCceeeCCEEEEeEeCC---cceEEE--EcccccCcCCCCCccceeecCCce--EEEec--CCccEEEEcCCC----CCC
Q 030501 55 HQHFYVGDWLYFGFDKH---KYNVLQ--VNKTNYEKCGDKDFIENVTRGGRD--VFNLT--EAKPFYFICGRG----DYC 121 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~---~HsV~~--V~~~~Y~~C~~~~~~~~~~~~G~~--~v~L~--~~G~~YFiC~v~----~HC 121 (176)
..+++.||+|+.++.+. .+++.- +.... ...+.......+++. .|++. .+|++||-|-.. .|=
T Consensus 48 ~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~----~~DG~~~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~ 123 (439)
T 2xu9_A 48 TLRVRPRDTVRLTLENRLPEPTNLHWHGLPISP----KVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQL 123 (439)
T ss_dssp EEEECTTCEEEEEEEECSSSCBCCEEETCCCCT----TTSCTTCCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHH
T ss_pred EEEEeCCCEEEEEEEECCCCCcceEeCCCCCCc----cccCCcccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHH
Confidence 44678999999888864 233321 11010 111211112222222 56653 699999999763 355
Q ss_pred cCCCeEEEEeeCC
Q 030501 122 SKGMKIAVHVETD 134 (176)
Q Consensus 122 ~~GmKl~I~V~~~ 134 (176)
..||...+.|...
T Consensus 124 ~~Gl~G~liV~~~ 136 (439)
T 2xu9_A 124 FAGLLGALVVESS 136 (439)
T ss_dssp HTTCCEEEEECCG
T ss_pred HhhCeEEEEEcCc
Confidence 6799999999764
No 94
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=28.74 E-value=35 Score=33.38 Aligned_cols=79 Identities=6% Similarity=0.038 Sum_probs=50.8
Q ss_pred CCceeeCCEEEEeEeCC-----cceEEEEcccccCcCCCCCcc--c--eeecCCc--eEEEecCCccEEEEcCCCCCCcC
Q 030501 55 HQHFYVGDWLYFGFDKH-----KYNVLQVNKTNYEKCGDKDFI--E--NVTRGGR--DVFNLTEAKPFYFICGRGDYCSK 123 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~-----~HsV~~V~~~~Y~~C~~~~~~--~--~~~~~G~--~~v~L~~~G~~YFiC~v~~HC~~ 123 (176)
..+++.|++++|++-+. .|++. +..-.+. . .+. . ....+.. -.++.+++|.|+|.|....|=..
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~-i~Gh~f~---v-~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAF-FHGQALT---N-KNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEE-ETTCCEE---E-TTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEE-EcCCEEE---E-CCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 56889999999998852 24433 2222222 1 111 1 1111222 25667789999999999999899
Q ss_pred CCeEEEEeeCCCCCC
Q 030501 124 GMKIAVHVETDPPPP 138 (176)
Q Consensus 124 GmKl~I~V~~~~~~~ 138 (176)
||...+.|.....++
T Consensus 347 Gm~~~~~V~~~~~~~ 361 (1065)
T 2j5w_A 347 GLQAFFQVQECNKSS 361 (1065)
T ss_dssp TCEEEEEEECSCCCC
T ss_pred CCEEEEEEecCCCcc
Confidence 999999998655433
No 95
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=28.47 E-value=27 Score=30.59 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=45.5
Q ss_pred CCceeeCCEEEEeEeCC---cceEEE----Ec-c-cccCcCCCCCccceeecCCc--eEEEec-CCccEEEEcC----CC
Q 030501 55 HQHFYVGDWLYFGFDKH---KYNVLQ----VN-K-TNYEKCGDKDFIENVTRGGR--DVFNLT-EAKPFYFICG----RG 118 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~~---~HsV~~----V~-~-~~Y~~C~~~~~~~~~~~~G~--~~v~L~-~~G~~YFiC~----v~ 118 (176)
..+++.||+|+.++.+. .+++.- ++ . .+-..| ++. .+++ ..|+++ ++|++||-|- ..
T Consensus 39 ~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~----~i~---PG~~~~Y~f~~~~~~GT~wYH~H~~~~~~ 111 (448)
T 3aw5_A 39 TIILRRGQRVDMTLKNKLTEPTIVHWHGFDVNWHNDAHPSF----AIT---PGESYNYSFDVVNRAGTYLYHPHPHGLTA 111 (448)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCEEEETCCCCHHHHTCGGG----CBC---TTCEEEEEEECCSCSEEEEEEECCTTTHH
T ss_pred eEEEeCCCEEEEEEEECCCCceeEEeCCccCCCccCCCCCc----cCC---CCCEEEEEEEcCCCCCceEeccCCCCchH
Confidence 34578999999999864 233321 11 0 000112 111 1222 367777 7999999998 34
Q ss_pred CCCcCCCeEEEEeeCCCC
Q 030501 119 DYCSKGMKIAVHVETDPP 136 (176)
Q Consensus 119 ~HC~~GmKl~I~V~~~~~ 136 (176)
.|=..||...+.|.....
T Consensus 112 ~q~~~Gl~G~liV~~~~~ 129 (448)
T 3aw5_A 112 KQFYMGQLGLVIVEDSGS 129 (448)
T ss_dssp HHHHTTCCEEEEEECTTT
T ss_pred HHHhccceEEEEEeCCcc
Confidence 455689999999987653
No 96
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=28.09 E-value=30 Score=23.39 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.0
Q ss_pred ccccCCceeeCCEEEEeEeC
Q 030501 51 QWAEHQHFYVGDWLYFGFDK 70 (176)
Q Consensus 51 ~WA~~~tF~vGD~LvF~y~~ 70 (176)
+-+.-..+++||.+.|.+..
T Consensus 47 ~~~~l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 47 PQTKMSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp TTCEECCCCTTCEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEE
Confidence 34445789999999999985
No 97
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=27.27 E-value=30 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=30.4
Q ss_pred CeEEEEcCCC--CCCCCC-------C----CccccccCCceeeCCEEEEeEeC
Q 030501 31 PVLHRVGGGK--YTWKPN-------V----NFTQWAEHQHFYVGDWLYFGFDK 70 (176)
Q Consensus 31 a~~~~VGg~~--~GW~~~-------~----~Y~~WA~~~tF~vGD~LvF~y~~ 70 (176)
...++||+.. ..|++. . +|..|.....+..|..+.|||-.
T Consensus 23 e~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi 75 (131)
T 2z0b_A 23 EVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK 75 (131)
T ss_dssp CEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred CEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence 4678999731 469862 2 67789888888889999999954
No 98
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=26.68 E-value=31 Score=31.41 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=28.3
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVET 133 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 133 (176)
.|..+++|.+.|.|-...|-..||...+.|.+
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 45667899999999999999999999999964
No 99
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=26.57 E-value=27 Score=25.32 Aligned_cols=12 Identities=25% Similarity=0.528 Sum_probs=10.5
Q ss_pred CCceeeCCEEEE
Q 030501 55 HQHFYVGDWLYF 66 (176)
Q Consensus 55 ~~tF~vGD~LvF 66 (176)
.+.+++||.|+|
T Consensus 31 ~~~ikvGD~I~f 42 (109)
T 2z0t_A 31 RRQIKPGDIIIF 42 (109)
T ss_dssp GGGCCTTCEEEE
T ss_pred hhcCCCCCEEEE
Confidence 457899999999
No 100
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=25.40 E-value=44 Score=28.13 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=26.8
Q ss_pred cCCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 106 TEAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 106 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
+.||.++|-|-...|=+.||...+.|....
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~ 308 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPD 308 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCC
Confidence 579999999999999999999999998654
No 101
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=24.31 E-value=48 Score=28.38 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=29.0
Q ss_pred EEEecCCccEEEEcCCCCCCcCCCeEEEEeeCCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCSKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 135 (176)
.|..+++|.++|-|-...|=..||...+.|....
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK 435 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCS
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCC
Confidence 4667789999999999999889999999997654
No 102
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.25 E-value=34 Score=23.82 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.6
Q ss_pred cCCCeEEEEeeCCCCCCCC
Q 030501 122 SKGMKIAVHVETDPPPPTA 140 (176)
Q Consensus 122 ~~GmKl~I~V~~~~~~~~~ 140 (176)
+.|..+.+.+....++|.|
T Consensus 63 ~~g~~i~lv~~~~~~~~~~ 81 (106)
T 3m62_B 63 KDGDQVVFMVSQKKSTKTK 81 (106)
T ss_dssp CTTCEEEEECCC-------
T ss_pred CCCCEEEEEEcCCCCCCCC
Confidence 5788888888766544443
No 103
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=24.14 E-value=1.5e+02 Score=19.22 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=11.3
Q ss_pred cCCceeeCCEEEEeEe
Q 030501 54 EHQHFYVGDWLYFGFD 69 (176)
Q Consensus 54 ~~~tF~vGD~LvF~y~ 69 (176)
...++..||.+.|.=.
T Consensus 15 ~~~~v~~G~~v~l~C~ 30 (114)
T 2cqv_A 15 EDQKVRAGESVELFGK 30 (114)
T ss_dssp CSEEEETTCCEEEEEE
T ss_pred CCeEEeCCCeEEEEEE
Confidence 4567788888877654
No 104
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=23.64 E-value=81 Score=25.99 Aligned_cols=34 Identities=6% Similarity=0.027 Sum_probs=27.4
Q ss_pred EEEecCCccEEEEcCCCC-CCcCCCeEEEEeeCCC
Q 030501 102 VFNLTEAKPFYFICGRGD-YCSKGMKIAVHVETDP 135 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~-HC~~GmKl~I~V~~~~ 135 (176)
.+..+++|.++|.|.... |=..||.-.+.|....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 466778999999999873 6578999999998643
No 105
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=20.53 E-value=85 Score=25.95 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=26.6
Q ss_pred EEEecCCccEEEEcCCCCCCc------CCCeEEEEeeCC
Q 030501 102 VFNLTEAKPFYFICGRGDYCS------KGMKIAVHVETD 134 (176)
Q Consensus 102 ~v~L~~~G~~YFiC~v~~HC~------~GmKl~I~V~~~ 134 (176)
.+..++||.+.|-|-...|-. .||...|.+...
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~ 277 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEV 277 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTT
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCC
Confidence 456778999999999999998 467777777654
No 106
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=20.04 E-value=90 Score=21.77 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=12.2
Q ss_pred CCceeeCCEEEEeEeC
Q 030501 55 HQHFYVGDWLYFGFDK 70 (176)
Q Consensus 55 ~~tF~vGD~LvF~y~~ 70 (176)
...+++||.+......
T Consensus 5 ~~~~~VG~rV~V~~~~ 20 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRS 20 (95)
T ss_dssp CCCCCSSCEEEEECSS
T ss_pred cccCcCCCEEEEecCC
Confidence 4568999999887544
Done!