BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030502
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
           Into The Structural Basis Of A Multifunctional (Iso)
           Flavonoid Glycosyltransferase
          Length = 482

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 14/170 (8%)

Query: 13  NRR-RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN--------SPNSCN-YPH 62
           NR+  V++ P P QGHINP+ +L  +L+  GF IT ++T  N         P + + +  
Sbjct: 6   NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65

Query: 63  FEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFAC 122
           F F S   DG +       V+ D+P L  S+    + P+ + L      N   +     C
Sbjct: 66  FNFESIP-DGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTR---LNHSTNVPPVTC 121

Query: 123 LITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPILREKGYLPIQ 172
           L++D         A +F LP ++  + S  + L+   F    E+G +P +
Sbjct: 122 LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFK 171


>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
 pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
          Length = 454

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 115 ESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPILREK 166
           E+  +  CL+TDA ++    +A +     + L T    + L++    ++REK
Sbjct: 113 ETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREK 164


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,012,315
Number of Sequences: 62578
Number of extensions: 188463
Number of successful extensions: 389
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 4
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)