Query 030502
Match_columns 176
No_of_seqs 122 out of 1043
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 14:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 99.9 4.7E-25 1E-29 188.2 19.1 144 14-166 7-152 (451)
2 PLN02562 UDP-glycosyltransfera 99.9 3.8E-25 8.3E-30 188.8 16.8 143 14-168 6-152 (448)
3 PLN02173 UDP-glucosyl transfer 99.9 3.6E-24 7.7E-29 182.6 17.3 138 13-159 4-144 (449)
4 PLN02863 UDP-glucoronosyl/UDP- 99.9 1.7E-24 3.6E-29 186.0 15.3 142 13-162 8-157 (477)
5 PLN02448 UDP-glycosyltransfera 99.9 4.6E-24 9.9E-29 182.8 16.9 147 10-168 6-157 (459)
6 PLN02152 indole-3-acetate beta 99.9 7.4E-24 1.6E-28 180.9 17.3 142 13-162 2-149 (455)
7 PLN02670 transferase, transfer 99.9 5.3E-24 1.1E-28 182.4 16.1 146 13-168 5-159 (472)
8 PLN02555 limonoid glucosyltran 99.9 6.1E-24 1.3E-28 182.4 16.4 139 14-161 7-158 (480)
9 PLN02554 UDP-glycosyltransfera 99.9 2.4E-23 5.2E-28 179.3 16.3 144 14-166 2-159 (481)
10 PLN02534 UDP-glycosyltransfera 99.9 3.5E-23 7.6E-28 178.1 15.2 139 14-160 8-160 (491)
11 PLN02992 coniferyl-alcohol glu 99.9 6.1E-23 1.3E-27 176.2 16.4 140 12-165 3-150 (481)
12 PLN00164 glucosyltransferase; 99.9 1E-22 2.2E-27 175.2 17.0 137 13-164 2-155 (480)
13 PLN02210 UDP-glucosyl transfer 99.9 7.4E-23 1.6E-27 175.1 15.3 134 12-161 6-145 (456)
14 PLN00414 glycosyltransferase f 99.9 6.4E-23 1.4E-27 174.9 14.0 136 13-159 3-146 (446)
15 PLN03004 UDP-glycosyltransfera 99.9 2.6E-22 5.7E-27 171.2 16.6 144 13-164 2-157 (451)
16 PLN02208 glycosyltransferase f 99.9 8.9E-23 1.9E-27 173.9 13.7 136 14-161 4-147 (442)
17 PLN02207 UDP-glycosyltransfera 99.9 5.5E-22 1.2E-26 169.9 16.7 148 13-164 2-160 (468)
18 PLN03007 UDP-glucosyltransfera 99.9 4.5E-22 9.7E-27 171.5 16.0 142 13-161 4-164 (482)
19 PLN02167 UDP-glycosyltransfera 99.9 1E-21 2.2E-26 169.0 17.2 148 13-163 2-162 (475)
20 PLN02764 glycosyltransferase f 99.9 6.5E-22 1.4E-26 168.6 15.3 135 14-159 5-147 (453)
21 PLN03015 UDP-glucosyl transfer 99.9 1E-21 2.2E-26 168.0 16.3 140 14-164 3-153 (470)
22 cd03784 GT1_Gtf_like This fami 99.7 1.1E-16 2.4E-21 134.3 7.5 129 15-152 1-137 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 5.4E-15 1.2E-19 124.0 8.6 120 20-149 1-122 (392)
24 PF03033 Glyco_transf_28: Glyc 99.3 2.4E-14 5.2E-19 103.4 -4.4 128 17-152 1-133 (139)
25 KOG1192 UDP-glucuronosyl and U 99.3 2E-12 4.4E-17 111.3 6.1 144 14-163 5-159 (496)
26 PHA03392 egt ecdysteroid UDP-g 99.2 2.1E-10 4.6E-15 99.8 11.1 132 13-150 19-168 (507)
27 PF00201 UDPGT: UDP-glucoronos 99.0 6.7E-12 1.5E-16 108.4 -7.5 125 15-148 1-148 (500)
28 COG1819 Glycosyl transferases, 98.6 3.1E-08 6.7E-13 84.1 4.0 121 14-146 1-122 (406)
29 TIGR00661 MJ1255 conserved hyp 98.6 5.7E-07 1.2E-11 73.8 10.7 119 17-149 2-122 (321)
30 PF13528 Glyco_trans_1_3: Glyc 98.5 1.1E-06 2.4E-11 71.4 11.0 122 15-152 1-126 (318)
31 PRK12446 undecaprenyldiphospho 98.4 7.6E-06 1.6E-10 68.3 12.8 120 15-150 2-124 (352)
32 COG0707 MurG UDP-N-acetylgluco 98.0 0.00012 2.5E-09 61.4 11.6 118 16-149 2-123 (357)
33 TIGR01133 murG undecaprenyldip 97.7 0.0013 2.8E-08 53.8 13.4 115 16-146 2-119 (348)
34 cd03785 GT1_MurG MurG is an N- 97.6 0.0017 3.7E-08 53.1 13.0 115 16-146 1-118 (350)
35 PRK00726 murG undecaprenyldiph 97.6 0.0032 6.9E-08 52.0 13.7 116 15-146 2-120 (357)
36 TIGR00215 lpxB lipid-A-disacch 97.5 0.00046 1E-08 58.2 8.2 110 15-146 6-119 (385)
37 cd03818 GT1_ExpC_like This fam 97.3 0.0099 2.1E-07 49.8 13.3 115 16-147 1-116 (396)
38 PRK00025 lpxB lipid-A-disaccha 96.7 0.011 2.3E-07 49.2 8.5 36 15-51 2-37 (380)
39 cd03814 GT1_like_2 This family 96.6 0.027 5.9E-07 45.3 10.1 29 25-53 14-42 (364)
40 cd03816 GT1_ALG1_like This fam 96.6 0.063 1.4E-06 45.6 12.7 57 13-69 2-60 (415)
41 PF13477 Glyco_trans_4_2: Glyc 96.5 0.05 1.1E-06 38.5 9.9 103 16-148 1-107 (139)
42 cd03794 GT1_wbuB_like This fam 96.4 0.082 1.8E-06 42.5 11.8 29 25-53 14-42 (394)
43 COG4671 Predicted glycosyl tra 96.4 0.051 1.1E-06 45.4 10.1 57 14-70 9-69 (400)
44 PRK10307 putative glycosyl tra 96.3 0.096 2.1E-06 44.1 11.8 21 31-51 21-41 (412)
45 cd03823 GT1_ExpE7_like This fa 96.2 0.24 5.2E-06 39.6 13.4 29 25-53 15-43 (359)
46 cd04962 GT1_like_5 This family 96.1 0.068 1.5E-06 43.7 10.0 54 16-69 2-56 (371)
47 cd03800 GT1_Sucrose_synthase T 96.0 0.093 2E-06 43.2 10.5 105 25-146 21-130 (398)
48 cd03808 GT1_cap1E_like This fa 95.8 0.21 4.6E-06 39.6 11.5 54 16-69 1-54 (359)
49 PF13579 Glyco_trans_4_4: Glyc 95.8 0.025 5.5E-07 40.1 5.4 97 30-149 6-105 (160)
50 TIGR03590 PseG pseudaminic aci 95.8 0.061 1.3E-06 43.4 8.1 47 23-69 12-60 (279)
51 PLN02871 UDP-sulfoquinovose:DA 95.7 0.22 4.7E-06 42.9 11.7 40 13-52 57-101 (465)
52 PF12000 Glyco_trans_4_3: Gkyc 95.4 0.53 1.2E-05 35.4 11.5 93 40-147 1-95 (171)
53 PF04007 DUF354: Protein of un 95.3 0.1 2.2E-06 43.5 7.9 106 25-153 10-116 (335)
54 TIGR02470 sucr_synth sucrose s 95.2 0.76 1.6E-05 42.5 13.9 120 14-146 255-414 (784)
55 PF13439 Glyco_transf_4: Glyco 95.0 0.69 1.5E-05 33.1 10.9 30 25-54 12-41 (177)
56 TIGR03449 mycothiol_MshA UDP-N 94.9 0.67 1.5E-05 38.6 11.9 109 24-148 19-132 (405)
57 TIGR02468 sucrsPsyn_pln sucros 94.9 0.51 1.1E-05 44.9 12.0 115 26-148 196-341 (1050)
58 PLN00142 sucrose synthase 94.9 0.37 8E-06 44.7 10.8 31 118-148 407-439 (815)
59 cd03817 GT1_UGDG_like This fam 94.5 0.65 1.4E-05 37.1 10.6 33 21-53 10-42 (374)
60 cd04955 GT1_like_6 This family 94.3 1.2 2.5E-05 36.0 11.8 45 25-69 15-60 (363)
61 cd03805 GT1_ALG2_like This fam 94.1 1.6 3.4E-05 36.0 12.2 36 16-51 2-39 (392)
62 cd03819 GT1_WavL_like This fam 94.1 0.53 1.1E-05 38.0 9.2 100 25-150 10-111 (355)
63 cd03796 GT1_PIG-A_like This fa 93.9 1.1 2.3E-05 37.7 10.9 99 26-146 15-119 (398)
64 TIGR02472 sucr_P_syn_N sucrose 93.1 1.2 2.6E-05 38.1 10.1 105 26-147 27-144 (439)
65 cd03820 GT1_amsD_like This fam 92.8 2.6 5.6E-05 33.1 11.2 30 24-53 12-41 (348)
66 PLN02275 transferase, transfer 92.7 5.1 0.00011 33.4 13.3 56 14-69 4-62 (371)
67 COG1703 ArgK Putative periplas 92.6 1.9 4.1E-05 35.5 9.9 42 14-55 51-92 (323)
68 cd03802 GT1_AviGT4_like This f 92.3 3.5 7.7E-05 32.8 11.4 28 26-53 20-47 (335)
69 cd03801 GT1_YqgM_like This fam 91.8 3 6.6E-05 32.8 10.4 30 25-54 14-43 (374)
70 PRK13609 diacylglycerol glucos 91.1 0.33 7.1E-06 40.4 4.3 39 13-51 3-42 (380)
71 PRK00654 glgA glycogen synthas 90.7 3.9 8.6E-05 35.2 10.7 26 26-51 18-43 (466)
72 cd03812 GT1_CapH_like This fam 88.8 6 0.00013 31.8 9.9 38 16-53 1-40 (358)
73 PRK02261 methylaspartate mutas 88.3 1.4 3.1E-05 31.8 5.2 41 13-53 2-42 (137)
74 cd03822 GT1_ecORF704_like This 88.0 8.3 0.00018 30.8 10.2 37 16-52 1-40 (366)
75 cd03786 GT1_UDP-GlcNAc_2-Epime 87.5 6.2 0.00013 32.2 9.3 36 16-52 1-37 (363)
76 cd04951 GT1_WbdM_like This fam 86.6 0.88 1.9E-05 36.7 3.7 36 17-52 2-39 (360)
77 cd02067 B12-binding B12 bindin 86.1 1.6 3.4E-05 30.3 4.3 36 16-51 1-36 (119)
78 cd03821 GT1_Bme6_like This fam 85.9 1.5 3.3E-05 34.9 4.8 30 24-53 13-42 (375)
79 cd03798 GT1_wlbH_like This fam 85.7 14 0.00029 29.2 10.2 31 24-54 13-43 (377)
80 PLN02846 digalactosyldiacylgly 84.4 1.7 3.7E-05 37.8 4.6 40 13-52 3-47 (462)
81 cd03825 GT1_wcfI_like This fam 83.2 2.1 4.5E-05 34.5 4.5 38 16-53 2-41 (365)
82 cd03811 GT1_WabH_like This fam 82.8 2.8 6.1E-05 32.9 5.0 38 16-53 1-40 (353)
83 COG1817 Uncharacterized protei 82.2 11 0.00024 31.2 8.1 107 23-152 8-116 (346)
84 PRK10422 lipopolysaccharide co 81.6 22 0.00048 29.3 10.1 108 13-146 4-114 (352)
85 cd03806 GT1_ALG11_like This fa 81.5 16 0.00034 31.1 9.4 31 118-148 106-137 (419)
86 cd03795 GT1_like_4 This family 81.3 3.4 7.3E-05 33.2 5.0 31 24-54 13-43 (357)
87 cd05844 GT1_like_7 Glycosyltra 81.1 27 0.00059 28.2 11.1 29 118-146 81-111 (367)
88 TIGR02370 pyl_corrinoid methyl 80.6 4.4 9.5E-05 31.0 5.2 41 13-53 83-123 (197)
89 TIGR02193 heptsyl_trn_I lipopo 80.5 4.9 0.00011 32.6 5.8 54 16-69 1-57 (319)
90 TIGR03568 NeuC_NnaA UDP-N-acet 80.4 8.6 0.00019 32.2 7.3 116 16-149 2-126 (365)
91 PRK05749 3-deoxy-D-manno-octul 79.8 6.4 0.00014 33.3 6.4 29 16-44 51-79 (425)
92 COG3980 spsG Spore coat polysa 79.8 3.8 8.3E-05 33.5 4.7 37 16-52 2-42 (318)
93 COG1618 Predicted nucleotide k 79.6 7.5 0.00016 29.3 5.8 55 14-69 5-59 (179)
94 cd02070 corrinoid_protein_B12- 78.7 5.2 0.00011 30.6 5.1 39 13-51 81-119 (201)
95 cd01635 Glycosyltransferase_GT 78.7 3.7 7.9E-05 30.3 4.2 26 24-49 12-37 (229)
96 PRK05986 cob(I)alamin adenolsy 78.5 28 0.0006 26.7 10.8 57 13-69 21-83 (191)
97 PF02310 B12-binding: B12 bind 77.3 6.5 0.00014 26.9 4.8 36 16-51 2-37 (121)
98 PF02441 Flavoprotein: Flavopr 77.0 5.1 0.00011 28.3 4.2 36 16-52 2-37 (129)
99 TIGR00715 precor6x_red precorr 76.1 31 0.00067 27.6 8.9 34 16-54 2-35 (256)
100 cd02069 methionine_synthase_B1 75.9 7.3 0.00016 30.3 5.2 40 13-52 87-126 (213)
101 PF08660 Alg14: Oligosaccharid 75.5 31 0.00068 25.7 8.9 34 18-52 2-37 (170)
102 TIGR03492 conserved hypothetic 74.5 48 0.001 28.1 10.2 104 26-148 8-121 (396)
103 TIGR00708 cobA cob(I)alamin ad 73.6 36 0.00079 25.6 8.9 59 14-73 5-68 (173)
104 PRK11519 tyrosine kinase; Prov 72.8 79 0.0017 29.2 15.8 122 13-148 524-668 (719)
105 COG1435 Tdk Thymidine kinase [ 72.3 39 0.00083 26.2 8.1 41 14-54 3-44 (201)
106 TIGR02201 heptsyl_trn_III lipo 72.2 34 0.00074 28.0 8.6 107 16-147 1-110 (344)
107 PF04127 DFP: DNA / pantothena 72.2 8.1 0.00018 29.4 4.5 22 31-52 32-53 (185)
108 PF02951 GSH-S_N: Prokaryotic 72.1 6.7 0.00015 27.7 3.8 38 16-53 2-42 (119)
109 PF06506 PrpR_N: Propionate ca 70.0 9.9 0.00021 28.3 4.6 113 26-152 17-155 (176)
110 PRK10916 ADP-heptose:LPS hepto 69.8 52 0.0011 27.1 9.2 51 16-66 2-54 (348)
111 PRK10964 ADP-heptose:LPS hepto 69.7 21 0.00045 29.0 6.8 49 16-64 2-52 (322)
112 cd02071 MM_CoA_mut_B12_BD meth 69.6 11 0.00024 26.3 4.5 37 16-52 1-37 (122)
113 PF09314 DUF1972: Domain of un 69.5 11 0.00025 28.6 4.8 55 15-69 2-62 (185)
114 PF04244 DPRP: Deoxyribodipyri 69.4 5.6 0.00012 31.2 3.2 26 27-52 47-72 (224)
115 PRK08305 spoVFB dipicolinate s 68.8 7.8 0.00017 29.8 3.8 38 14-52 5-43 (196)
116 TIGR00347 bioD dethiobiotin sy 68.3 26 0.00056 25.4 6.5 142 22-175 6-164 (166)
117 COG2861 Uncharacterized protei 68.0 43 0.00094 26.7 7.8 39 98-145 137-178 (250)
118 KOG2941 Beta-1,4-mannosyltrans 67.7 20 0.00042 30.5 6.1 58 12-69 10-69 (444)
119 COG1484 DnaC DNA replication p 67.5 12 0.00026 29.8 4.8 40 14-53 105-144 (254)
120 cd03791 GT1_Glycogen_synthase_ 67.0 5.1 0.00011 34.3 2.8 26 26-51 17-42 (476)
121 PF08323 Glyco_transf_5: Starc 66.0 5.5 0.00012 31.4 2.6 23 29-51 20-42 (245)
122 PF12146 Hydrolase_4: Putative 65.6 21 0.00044 23.0 4.8 32 17-48 18-49 (79)
123 cd03799 GT1_amsK_like This is 65.4 16 0.00034 29.2 5.2 26 27-52 13-38 (355)
124 cd00561 CobA_CobO_BtuR ATP:cor 65.3 53 0.0012 24.3 11.1 56 14-69 2-63 (159)
125 COG2185 Sbm Methylmalonyl-CoA 65.2 13 0.00029 27.1 4.2 40 12-51 10-49 (143)
126 TIGR02095 glgA glycogen/starch 65.1 12 0.00026 32.1 4.7 26 26-51 18-43 (473)
127 PF01975 SurE: Survival protei 63.2 9.3 0.0002 29.3 3.3 27 30-56 15-41 (196)
128 PLN02316 synthase/transferase 61.9 11 0.00024 36.2 4.1 39 14-52 587-631 (1036)
129 TIGR02195 heptsyl_trn_II lipop 61.7 79 0.0017 25.7 8.8 49 16-64 1-51 (334)
130 TIGR02015 BchY chlorophyllide 61.2 1.1E+02 0.0023 26.4 10.6 33 15-52 286-318 (422)
131 COG0162 TyrS Tyrosyl-tRNA synt 61.1 9.6 0.00021 32.7 3.3 36 16-52 36-74 (401)
132 PRK07313 phosphopantothenoylcy 60.7 13 0.00028 28.2 3.6 37 15-52 2-38 (182)
133 TIGR02852 spore_dpaB dipicolin 59.8 13 0.00028 28.4 3.4 37 16-52 2-38 (187)
134 PRK01021 lpxB lipid-A-disaccha 59.2 1.4E+02 0.0031 27.1 11.4 120 22-149 200-345 (608)
135 PRK06249 2-dehydropantoate 2-r 58.5 16 0.00034 29.8 4.1 37 11-52 2-38 (313)
136 PLN02924 thymidylate kinase 58.5 26 0.00056 27.3 5.1 45 1-48 6-50 (220)
137 PF03808 Glyco_tran_WecB: Glyc 58.2 74 0.0016 23.6 7.7 91 29-150 35-135 (172)
138 cd01018 ZntC Metal binding pro 56.6 46 0.001 26.4 6.4 44 100-150 205-250 (266)
139 PLN02572 UDP-sulfoquinovose sy 56.6 27 0.00058 30.1 5.3 44 3-49 35-78 (442)
140 PRK13982 bifunctional SbtC-lik 56.4 22 0.00048 31.2 4.8 39 14-52 256-306 (475)
141 COG4088 Predicted nucleotide k 55.7 18 0.00039 28.5 3.7 35 16-50 3-37 (261)
142 PF02572 CobA_CobO_BtuR: ATP:c 55.7 70 0.0015 24.0 6.8 99 14-130 3-107 (172)
143 PLN02605 monogalactosyldiacylg 55.6 33 0.00071 28.6 5.6 31 19-49 4-37 (382)
144 PF00070 Pyr_redox: Pyridine n 55.6 21 0.00046 22.5 3.6 25 29-53 9-33 (80)
145 PRK14098 glycogen synthase; Pr 55.0 24 0.00053 30.8 4.9 39 13-51 4-48 (489)
146 COG0541 Ffh Signal recognition 54.8 87 0.0019 27.3 7.9 42 14-55 100-141 (451)
147 PRK14099 glycogen synthase; Pr 54.6 25 0.00055 30.7 4.9 39 13-51 2-46 (485)
148 cd03807 GT1_WbnK_like This fam 53.9 26 0.00056 27.6 4.5 47 23-69 10-58 (365)
149 PF00448 SRP54: SRP54-type pro 53.6 28 0.0006 26.6 4.4 39 16-54 3-41 (196)
150 PF13450 NAD_binding_8: NAD(P) 53.3 19 0.00042 22.3 3.0 21 31-51 8-28 (68)
151 PF02350 Epimerase_2: UDP-N-ac 53.2 31 0.00068 28.7 5.1 42 98-149 56-100 (346)
152 PF03720 UDPG_MGDP_dh_C: UDP-g 53.1 19 0.00042 24.4 3.2 22 29-50 17-38 (106)
153 cd02034 CooC The accessory pro 52.6 41 0.0009 23.3 4.9 37 16-52 1-37 (116)
154 cd03115 SRP The signal recogni 52.2 42 0.0009 24.4 5.2 38 17-54 3-40 (173)
155 PRK00771 signal recognition pa 51.9 53 0.0011 28.5 6.3 42 14-55 95-136 (437)
156 PRK07773 replicative DNA helic 51.9 73 0.0016 30.2 7.7 38 17-54 220-258 (886)
157 PRK09620 hypothetical protein; 50.5 40 0.00088 26.4 5.0 21 31-51 32-52 (229)
158 COG0503 Apt Adenine/guanine ph 50.4 38 0.00083 25.5 4.7 29 118-146 52-82 (179)
159 TIGR00064 ftsY signal recognit 50.2 53 0.0012 26.4 5.8 39 15-53 73-111 (272)
160 TIGR00234 tyrS tyrosyl-tRNA sy 50.2 15 0.00033 31.1 2.8 35 17-52 35-72 (377)
161 COG0467 RAD55 RecA-superfamily 49.7 43 0.00093 26.4 5.2 41 14-54 23-63 (260)
162 cd01983 Fer4_NifH The Fer4_Nif 49.6 51 0.0011 20.6 4.8 33 17-49 2-34 (99)
163 PF07355 GRDB: Glycine/sarcosi 49.5 30 0.00065 29.1 4.3 31 118-148 79-119 (349)
164 TIGR00421 ubiX_pad polyprenyl 49.3 21 0.00045 27.0 3.1 29 23-52 8-36 (181)
165 PRK09444 pntB pyridine nucleot 48.8 34 0.00074 29.8 4.6 37 14-52 306-347 (462)
166 PF02684 LpxB: Lipid-A-disacch 48.0 86 0.0019 26.6 6.9 41 99-146 69-114 (373)
167 COG2910 Putative NADH-flavin r 47.5 19 0.00042 27.7 2.6 33 16-52 2-34 (211)
168 TIGR00176 mobB molybdopterin-g 47.5 44 0.00096 24.4 4.6 35 17-51 2-36 (155)
169 PF01210 NAD_Gly3P_dh_N: NAD-d 46.8 28 0.0006 25.3 3.4 22 31-52 11-32 (157)
170 PRK14619 NAD(P)H-dependent gly 46.7 33 0.0007 27.9 4.1 35 12-51 2-36 (308)
171 KOG0780 Signal recognition par 46.6 1.3E+02 0.0029 26.0 7.7 40 16-55 103-142 (483)
172 TIGR01425 SRP54_euk signal rec 46.6 40 0.00086 29.2 4.7 39 16-54 102-140 (429)
173 TIGR03499 FlhF flagellar biosy 46.4 81 0.0018 25.4 6.3 41 14-54 194-236 (282)
174 PRK14089 ipid-A-disaccharide s 46.0 71 0.0015 26.8 6.1 32 118-149 75-111 (347)
175 PF08026 Antimicrobial_5: Bee 45.9 2.8 6E-05 22.9 -1.5 25 19-43 15-39 (39)
176 PRK06732 phosphopantothenate-- 45.3 24 0.00051 27.6 3.0 33 17-51 17-49 (229)
177 PF01555 N6_N4_Mtase: DNA meth 45.2 38 0.00081 25.4 4.1 32 118-149 189-222 (231)
178 cd00861 ProRS_anticodon_short 45.1 47 0.001 21.3 4.0 35 16-50 3-39 (94)
179 PLN00016 RNA-binding protein; 44.7 33 0.00072 28.6 4.0 39 14-52 52-90 (378)
180 PRK00090 bioD dithiobiotin syn 44.6 99 0.0021 23.5 6.4 28 22-49 8-35 (222)
181 COG1255 Uncharacterized protei 44.6 25 0.00055 24.9 2.7 44 14-67 14-57 (129)
182 KOG0409 Predicted dehydrogenas 44.5 53 0.0011 27.3 4.9 44 2-51 24-67 (327)
183 COG2894 MinD Septum formation 44.4 50 0.0011 26.4 4.5 40 15-54 2-43 (272)
184 cd02065 B12-binding_like B12 b 44.2 55 0.0012 22.2 4.5 35 17-51 2-36 (125)
185 COG0299 PurN Folate-dependent 44.2 62 0.0013 25.0 5.0 32 118-149 28-59 (200)
186 PRK09361 radB DNA repair and r 44.1 61 0.0013 24.7 5.1 35 17-51 26-60 (225)
187 PF01695 IstB_IS21: IstB-like 43.5 54 0.0012 24.5 4.6 39 14-52 47-85 (178)
188 PF03853 YjeF_N: YjeF-related 43.5 29 0.00063 25.7 3.1 37 13-50 24-60 (169)
189 TIGR02113 coaC_strep phosphopa 43.2 32 0.00069 25.9 3.3 36 16-52 2-37 (177)
190 PRK13869 plasmid-partitioning 43.0 66 0.0014 27.5 5.5 46 7-52 113-160 (405)
191 TIGR02149 glgA_Coryne glycogen 42.9 1.8E+02 0.004 23.6 9.9 37 29-69 20-56 (388)
192 COG0300 DltE Short-chain dehyd 42.8 27 0.00058 28.2 3.0 35 14-51 5-39 (265)
193 PF03205 MobB: Molybdopterin g 42.8 54 0.0012 23.5 4.3 36 16-51 2-37 (140)
194 TIGR02329 propionate_PrpR prop 42.8 82 0.0018 28.0 6.2 42 98-149 131-172 (526)
195 PLN03209 translocon at the inn 42.6 56 0.0012 29.5 5.2 38 10-50 75-112 (576)
196 KOG3062 RNA polymerase II elon 42.6 62 0.0013 25.9 4.8 30 15-44 2-31 (281)
197 cd03789 GT1_LPS_heptosyltransf 42.6 1.7E+02 0.0036 23.1 9.7 49 16-64 1-51 (279)
198 PRK09219 xanthine phosphoribos 42.4 59 0.0013 24.7 4.7 32 118-149 49-82 (189)
199 COG2874 FlaH Predicted ATPases 42.4 99 0.0021 24.5 5.9 32 22-53 36-67 (235)
200 PRK06719 precorrin-2 dehydroge 42.3 32 0.00069 25.2 3.1 36 11-51 10-45 (157)
201 PRK14974 cell division protein 42.2 74 0.0016 26.6 5.6 39 15-53 141-179 (336)
202 cd03809 GT1_mtfB_like This fam 42.2 48 0.001 26.3 4.5 28 25-52 15-42 (365)
203 cd01965 Nitrogenase_MoFe_beta_ 42.1 49 0.0011 28.3 4.7 26 118-146 370-395 (428)
204 PRK06849 hypothetical protein; 41.9 73 0.0016 26.7 5.6 35 14-52 4-38 (389)
205 TIGR00640 acid_CoA_mut_C methy 41.9 45 0.00097 23.8 3.8 38 14-51 53-91 (132)
206 KOG1838 Alpha/beta hydrolase [ 41.5 78 0.0017 27.3 5.6 40 13-52 124-164 (409)
207 PLN02939 transferase, transfer 41.4 60 0.0013 31.2 5.3 40 12-51 479-524 (977)
208 PRK11889 flhF flagellar biosyn 41.4 71 0.0015 27.7 5.4 41 14-54 241-281 (436)
209 PF02233 PNTB: NAD(P) transhyd 41.2 37 0.00079 29.7 3.7 37 14-52 307-348 (463)
210 cd01981 Pchlide_reductase_B Pc 41.2 52 0.0011 28.1 4.7 26 118-146 369-394 (430)
211 PRK00784 cobyric acid synthase 40.7 90 0.002 27.3 6.2 34 17-50 5-39 (488)
212 PF03308 ArgK: ArgK protein; 40.6 45 0.00097 27.0 3.9 42 14-55 29-70 (266)
213 TIGR01918 various_sel_PB selen 40.5 50 0.0011 28.6 4.3 30 118-147 75-114 (431)
214 TIGR01917 gly_red_sel_B glycin 40.4 49 0.0011 28.6 4.3 30 118-147 75-114 (431)
215 PF07015 VirC1: VirC1 protein; 40.2 1E+02 0.0022 24.4 5.8 40 17-56 4-44 (231)
216 PRK10867 signal recognition pa 40.2 56 0.0012 28.3 4.7 40 16-55 102-142 (433)
217 COG0665 DadA Glycine/D-amino a 40.0 39 0.00084 27.8 3.7 35 13-52 3-37 (387)
218 PRK05920 aromatic acid decarbo 40.0 44 0.00096 25.8 3.7 38 14-52 3-40 (204)
219 COG1763 MobB Molybdopterin-gua 40.0 67 0.0015 23.9 4.5 35 17-51 5-39 (161)
220 cd03792 GT1_Trehalose_phosphor 39.9 46 0.001 27.3 4.1 35 17-51 2-38 (372)
221 PRK06567 putative bifunctional 39.9 45 0.00097 32.2 4.3 36 11-51 380-415 (1028)
222 TIGR01501 MthylAspMutase methy 39.8 77 0.0017 22.8 4.7 39 14-52 1-39 (134)
223 COG0569 TrkA K+ transport syst 39.5 28 0.00061 27.1 2.6 22 31-52 12-33 (225)
224 PRK14106 murD UDP-N-acetylmura 39.3 53 0.0012 28.0 4.5 33 14-51 5-37 (450)
225 PRK12342 hypothetical protein; 39.1 63 0.0014 25.9 4.6 30 119-148 109-144 (254)
226 PRK06197 short chain dehydroge 38.8 1.1E+02 0.0024 24.4 6.1 39 9-50 10-48 (306)
227 PRK13236 nitrogenase reductase 38.8 77 0.0017 25.6 5.2 41 12-52 3-44 (296)
228 PRK08057 cobalt-precorrin-6x r 38.7 2E+02 0.0043 22.9 9.4 36 14-54 2-37 (248)
229 PLN02293 adenine phosphoribosy 38.6 86 0.0019 23.8 5.1 30 118-147 61-92 (187)
230 PRK07576 short chain dehydroge 38.3 1E+02 0.0022 24.0 5.7 22 29-50 20-41 (264)
231 PF13460 NAD_binding_10: NADH( 38.3 36 0.00079 24.7 2.9 37 31-69 11-47 (183)
232 cd01980 Chlide_reductase_Y Chl 38.2 60 0.0013 27.7 4.6 27 118-147 349-375 (416)
233 COG3349 Uncharacterized conser 38.2 27 0.0006 30.7 2.5 25 29-53 10-34 (485)
234 PF02780 Transketolase_C: Tran 38.0 68 0.0015 22.1 4.2 37 13-51 8-44 (124)
235 cd00395 Tyr_Trp_RS_core cataly 38.0 29 0.00063 28.0 2.5 25 26-51 16-40 (273)
236 PF03403 PAF-AH_p_II: Platelet 37.9 32 0.0007 29.1 2.9 40 13-52 98-137 (379)
237 PRK06603 enoyl-(acyl carrier p 37.8 70 0.0015 24.9 4.7 35 14-49 7-41 (260)
238 PRK03359 putative electron tra 37.6 72 0.0016 25.6 4.7 30 119-148 112-147 (256)
239 PF07755 DUF1611: Protein of u 37.5 68 0.0015 26.4 4.6 38 14-51 112-150 (301)
240 PRK06029 3-octaprenyl-4-hydrox 37.4 53 0.0011 25.0 3.7 37 15-52 2-39 (185)
241 PRK13608 diacylglycerol glucos 37.4 69 0.0015 26.9 4.8 31 13-43 4-35 (391)
242 KOG1014 17 beta-hydroxysteroid 37.3 34 0.00073 28.3 2.8 34 15-51 49-82 (312)
243 PF00391 PEP-utilizers: PEP-ut 37.3 50 0.0011 21.1 3.1 31 118-148 29-61 (80)
244 TIGR00679 hpr-ser Hpr(Ser) kin 37.2 2.1E+02 0.0045 23.7 7.3 51 99-155 69-121 (304)
245 cd01141 TroA_d Periplasmic bin 37.2 63 0.0014 23.7 4.1 31 118-148 68-100 (186)
246 PRK06835 DNA replication prote 37.1 79 0.0017 26.3 5.0 39 14-52 183-221 (329)
247 PF13614 AAA_31: AAA domain; P 36.9 71 0.0015 22.5 4.3 38 17-54 3-41 (157)
248 PF02558 ApbA: Ketopantoate re 36.8 37 0.00081 24.0 2.8 21 32-52 11-31 (151)
249 PRK14494 putative molybdopteri 36.8 77 0.0017 25.0 4.7 33 17-49 4-36 (229)
250 PRK06718 precorrin-2 dehydroge 36.8 44 0.00096 25.6 3.3 36 11-51 7-42 (202)
251 COG2084 MmsB 3-hydroxyisobutyr 36.8 57 0.0012 26.6 4.0 31 16-51 2-32 (286)
252 PF01380 SIS: SIS domain SIS d 36.4 96 0.0021 21.0 4.7 32 23-54 61-92 (131)
253 PRK11749 dihydropyrimidine deh 36.2 52 0.0011 28.3 4.0 37 10-51 136-172 (457)
254 COG3046 Uncharacterized protei 36.2 47 0.001 28.8 3.5 27 27-53 51-77 (505)
255 PF01738 DLH: Dienelactone hyd 36.1 69 0.0015 24.1 4.3 34 14-48 14-47 (218)
256 PF02702 KdpD: Osmosensitive K 35.9 71 0.0015 24.9 4.2 40 14-53 5-44 (211)
257 PRK06522 2-dehydropantoate 2-r 35.9 49 0.0011 26.4 3.5 31 16-51 2-32 (304)
258 cd00805 TyrRS_core catalytic c 35.9 43 0.00093 26.9 3.2 26 26-52 17-42 (269)
259 smart00382 AAA ATPases associa 35.8 56 0.0012 21.6 3.4 39 14-52 2-40 (148)
260 cd02032 Bchl_like This family 35.8 77 0.0017 24.9 4.6 36 16-51 2-37 (267)
261 PRK07414 cob(I)yrinic acid a,c 35.7 1.9E+02 0.0042 21.8 11.3 56 14-69 21-82 (178)
262 PRK04940 hypothetical protein; 35.7 1.1E+02 0.0023 23.3 5.1 32 119-150 60-92 (180)
263 TIGR02699 archaeo_AfpA archaeo 35.6 58 0.0013 24.5 3.6 29 24-52 8-38 (174)
264 COG0052 RpsB Ribosomal protein 35.4 86 0.0019 25.1 4.7 32 119-150 156-189 (252)
265 cd01017 AdcA Metal binding pro 35.4 97 0.0021 24.8 5.2 43 100-149 208-252 (282)
266 PRK13354 tyrosyl-tRNA syntheta 35.2 45 0.00098 28.6 3.4 25 26-51 50-74 (410)
267 PLN03050 pyridoxine (pyridoxam 35.1 41 0.00088 26.8 2.9 33 15-50 61-95 (246)
268 PF06925 MGDG_synth: Monogalac 34.9 1.3E+02 0.0027 22.0 5.4 23 27-49 1-24 (169)
269 PRK03094 hypothetical protein; 34.8 39 0.00085 22.1 2.3 21 31-51 10-30 (80)
270 PRK08229 2-dehydropantoate 2-r 34.8 50 0.0011 27.0 3.5 32 15-51 3-34 (341)
271 PF01297 TroA: Periplasmic sol 34.7 63 0.0014 25.3 4.0 42 101-149 188-231 (256)
272 TIGR01278 DPOR_BchB light-inde 34.7 78 0.0017 27.9 4.8 26 118-146 363-388 (511)
273 cd02067 B12-binding B12 bindin 34.6 85 0.0018 21.3 4.2 38 14-51 50-88 (119)
274 TIGR00521 coaBC_dfp phosphopan 34.5 51 0.0011 28.1 3.6 38 14-52 3-40 (390)
275 TIGR02114 coaB_strep phosphopa 34.5 42 0.00091 26.2 2.9 21 30-50 27-47 (227)
276 TIGR03172 probable selenium-de 34.4 85 0.0018 24.8 4.5 29 24-52 7-35 (232)
277 TIGR00745 apbA_panE 2-dehydrop 34.3 34 0.00074 27.1 2.4 19 33-51 5-23 (293)
278 TIGR00236 wecB UDP-N-acetylglu 34.3 1E+02 0.0022 25.3 5.3 111 16-146 2-116 (365)
279 PRK00889 adenylylsulfate kinas 34.2 97 0.0021 22.5 4.7 36 16-51 6-41 (175)
280 PRK10416 signal recognition pa 34.1 99 0.0021 25.5 5.1 40 15-54 115-154 (318)
281 CHL00076 chlB photochlorophyll 34.0 69 0.0015 28.3 4.4 27 118-147 373-399 (513)
282 PLN02253 xanthoxin dehydrogena 33.9 1.1E+02 0.0023 23.9 5.2 33 15-50 18-50 (280)
283 cd02037 MRP-like MRP (Multiple 33.9 91 0.002 22.6 4.5 31 22-52 8-38 (169)
284 PRK06526 transposase; Provisio 33.8 52 0.0011 26.2 3.3 38 14-51 98-135 (254)
285 PLN02695 GDP-D-mannose-3',5'-e 33.8 1E+02 0.0022 25.6 5.3 36 11-50 18-53 (370)
286 PRK08181 transposase; Validate 33.7 89 0.0019 25.2 4.7 38 14-51 106-143 (269)
287 PRK04148 hypothetical protein; 33.6 46 0.001 24.0 2.7 32 14-51 17-48 (134)
288 PRK05541 adenylylsulfate kinas 33.6 1.3E+02 0.0028 21.8 5.3 35 16-50 9-43 (176)
289 PLN02331 phosphoribosylglycina 33.5 1E+02 0.0022 23.9 4.8 45 101-148 13-57 (207)
290 PF05724 TPMT: Thiopurine S-me 33.5 55 0.0012 25.4 3.3 29 15-49 38-66 (218)
291 PF01316 Arg_repressor: Argini 33.3 24 0.00053 22.4 1.1 20 31-50 22-41 (70)
292 PF10087 DUF2325: Uncharacteri 33.2 1.1E+02 0.0024 20.1 4.5 34 119-152 48-87 (97)
293 PRK14489 putative bifunctional 33.2 1.1E+02 0.0023 25.7 5.2 38 14-51 205-242 (366)
294 TIGR02700 flavo_MJ0208 archaeo 33.1 75 0.0016 24.9 4.1 30 23-52 7-39 (234)
295 CHL00072 chlL photochlorophyll 33.1 1E+02 0.0022 25.0 4.9 37 16-52 2-38 (290)
296 PLN02496 probable phosphopanto 33.1 66 0.0014 25.0 3.7 39 14-54 19-57 (209)
297 PRK08558 adenine phosphoribosy 33.1 1E+02 0.0022 24.3 4.9 29 118-146 110-140 (238)
298 PRK06505 enoyl-(acyl carrier p 33.1 92 0.002 24.5 4.7 35 14-49 6-40 (271)
299 PF03698 UPF0180: Uncharacteri 33.1 42 0.00091 22.0 2.2 22 31-52 10-31 (80)
300 PF05728 UPF0227: Uncharacteri 33.0 79 0.0017 23.9 4.1 30 121-150 61-91 (187)
301 COG2085 Predicted dinucleotide 33.0 47 0.001 25.9 2.8 23 31-53 13-35 (211)
302 PF00289 CPSase_L_chain: Carba 32.9 30 0.00066 23.8 1.6 29 21-51 78-106 (110)
303 cd01120 RecA-like_NTPases RecA 32.5 1.3E+02 0.0029 20.7 5.1 39 16-54 1-39 (165)
304 PRK12726 flagellar biosynthesi 32.4 1.4E+02 0.0031 25.7 5.8 42 14-55 206-247 (407)
305 TIGR00959 ffh signal recogniti 32.3 95 0.0021 26.9 4.9 40 16-55 101-141 (428)
306 TIGR01743 purR_Bsub pur operon 32.3 95 0.0021 25.1 4.6 30 118-147 127-158 (268)
307 TIGR01316 gltA glutamate synth 32.3 1.1E+02 0.0025 26.2 5.4 37 10-51 129-165 (449)
308 PRK08939 primosomal protein Dn 32.3 1E+02 0.0022 25.3 4.8 39 14-52 156-194 (306)
309 cd00806 TrpRS_core catalytic c 32.2 49 0.0011 26.7 3.0 27 26-52 15-41 (280)
310 PRK09435 membrane ATPase/prote 32.2 1.5E+02 0.0032 24.8 5.8 41 14-54 56-96 (332)
311 TIGR00730 conserved hypothetic 32.1 89 0.0019 23.5 4.2 34 16-49 2-39 (178)
312 PRK13604 luxD acyl transferase 32.1 1.2E+02 0.0027 25.0 5.3 33 16-48 38-70 (307)
313 KOG4589 Cell division protein 32.0 39 0.00084 26.2 2.2 23 101-130 125-147 (232)
314 KOG1210 Predicted 3-ketosphing 31.9 91 0.002 26.0 4.4 35 11-49 30-64 (331)
315 cd03466 Nitrogenase_NifN_2 Nit 31.9 96 0.0021 26.6 4.9 26 118-146 371-396 (429)
316 PF02142 MGS: MGS-like domain 31.9 48 0.001 21.8 2.5 16 31-46 2-17 (95)
317 PRK08213 gluconate 5-dehydroge 31.8 1.2E+02 0.0026 23.3 5.1 20 31-50 25-44 (259)
318 PRK02910 light-independent pro 31.7 89 0.0019 27.6 4.7 26 118-146 361-386 (519)
319 PRK06222 ferredoxin-NADP(+) re 31.6 1.2E+02 0.0026 24.2 5.2 38 14-53 98-135 (281)
320 PRK07454 short chain dehydroge 31.5 1.4E+02 0.0029 22.7 5.3 33 15-50 6-38 (241)
321 cd01974 Nitrogenase_MoFe_beta 31.4 1E+02 0.0022 26.5 4.9 26 118-146 376-401 (435)
322 TIGR01281 DPOR_bchL light-inde 31.4 1E+02 0.0022 24.2 4.7 36 16-51 2-37 (268)
323 PRK13011 formyltetrahydrofolat 31.3 1.1E+02 0.0023 25.0 4.8 44 99-147 101-144 (286)
324 TIGR00750 lao LAO/AO transport 31.2 1.7E+02 0.0036 23.7 6.0 41 14-54 34-74 (300)
325 TIGR03264 met_CoM_red_C methyl 31.1 65 0.0014 24.5 3.2 34 17-50 36-70 (194)
326 PRK09213 pur operon repressor; 31.0 1E+02 0.0023 24.9 4.6 30 118-147 129-160 (271)
327 PF07302 AroM: AroM protein; 31.0 1.2E+02 0.0026 23.9 4.8 44 99-149 165-211 (221)
328 TIGR01082 murC UDP-N-acetylmur 30.8 54 0.0012 28.1 3.2 30 16-49 1-30 (448)
329 PF01266 DAO: FAD dependent ox 30.7 53 0.0011 26.2 3.0 22 31-52 11-32 (358)
330 TIGR01675 plant-AP plant acid 30.5 65 0.0014 25.4 3.3 25 28-52 122-146 (229)
331 PRK12829 short chain dehydroge 30.5 1.3E+02 0.0027 23.1 5.0 33 14-50 11-43 (264)
332 PLN02240 UDP-glucose 4-epimera 30.4 1.2E+02 0.0027 24.5 5.2 31 15-49 6-36 (352)
333 PRK13234 nifH nitrogenase redu 30.4 1.2E+02 0.0026 24.5 5.0 39 14-52 4-42 (295)
334 PF02603 Hpr_kinase_N: HPr Ser 30.4 58 0.0012 22.9 2.8 41 102-148 71-113 (127)
335 cd01452 VWA_26S_proteasome_sub 30.4 1.4E+02 0.0031 22.7 5.1 36 17-52 111-146 (187)
336 cd01425 RPS2 Ribosomal protein 30.4 33 0.00071 26.1 1.6 33 118-150 126-160 (193)
337 PLN00198 anthocyanidin reducta 30.3 1.5E+02 0.0033 23.9 5.7 37 11-51 6-42 (338)
338 TIGR01007 eps_fam capsular exo 30.2 1.6E+02 0.0034 22.0 5.4 38 15-52 17-56 (204)
339 COG4081 Uncharacterized protei 30.1 41 0.00089 24.3 1.9 27 26-52 16-42 (148)
340 PRK14478 nitrogenase molybdenu 30.0 76 0.0016 27.7 4.0 25 118-145 392-416 (475)
341 cd02040 NifH NifH gene encodes 30.0 1.2E+02 0.0026 23.7 4.8 37 16-52 3-39 (270)
342 cd03114 ArgK-like The function 29.9 1.3E+02 0.0028 21.6 4.7 36 17-52 2-37 (148)
343 PRK10749 lysophospholipase L2; 29.9 1.4E+02 0.003 24.2 5.4 36 14-50 54-89 (330)
344 PTZ00445 p36-lilke protein; Pr 29.8 58 0.0012 25.6 2.8 28 26-53 74-102 (219)
345 PRK12560 adenine phosphoribosy 29.8 1.4E+02 0.003 22.5 5.0 30 118-147 50-81 (187)
346 cd02072 Glm_B12_BD B12 binding 29.7 1.2E+02 0.0026 21.6 4.3 38 14-51 50-88 (128)
347 cd01124 KaiC KaiC is a circadi 29.7 1.4E+02 0.003 21.7 4.9 38 17-54 2-39 (187)
348 PF02374 ArsA_ATPase: Anion-tr 29.7 86 0.0019 25.7 4.0 39 16-54 2-41 (305)
349 cd00550 ArsA_ATPase Oxyanion-t 29.3 1E+02 0.0022 24.4 4.3 36 18-53 4-39 (254)
350 TIGR00725 conserved hypothetic 29.3 89 0.0019 23.0 3.7 32 16-47 3-36 (159)
351 TIGR01285 nifN nitrogenase mol 29.2 98 0.0021 26.7 4.5 26 118-146 372-397 (432)
352 TIGR00288 conserved hypothetic 29.2 82 0.0018 23.4 3.5 33 15-52 107-139 (160)
353 cd05014 SIS_Kpsf KpsF-like pro 29.1 1.5E+02 0.0032 20.1 4.7 33 23-55 55-87 (128)
354 PRK06114 short chain dehydroge 29.1 1.2E+02 0.0026 23.3 4.7 33 15-50 8-40 (254)
355 cd02033 BchX Chlorophyllide re 29.0 1.6E+02 0.0034 24.6 5.5 41 13-53 29-70 (329)
356 TIGR01829 AcAcCoA_reduct aceto 29.0 1.1E+02 0.0024 23.0 4.4 31 17-50 2-32 (242)
357 PRK09545 znuA high-affinity zi 29.0 1.4E+02 0.003 24.5 5.1 42 101-149 241-284 (311)
358 TIGR00313 cobQ cobyric acid sy 29.0 2.4E+02 0.0052 24.7 6.9 29 23-51 8-36 (475)
359 PF01497 Peripla_BP_2: Peripla 28.9 94 0.002 23.5 4.0 32 119-150 60-93 (238)
360 PRK06196 oxidoreductase; Provi 28.8 1.2E+02 0.0026 24.3 4.8 33 15-50 26-58 (315)
361 PRK13608 diacylglycerol glucos 28.8 1.2E+02 0.0026 25.4 4.9 32 118-149 103-136 (391)
362 PF03446 NAD_binding_2: NAD bi 28.8 66 0.0014 23.4 3.0 32 15-51 2-33 (163)
363 PRK02006 murD UDP-N-acetylmura 28.5 80 0.0017 27.5 3.9 32 14-50 7-38 (498)
364 PRK08265 short chain dehydroge 28.4 1.2E+02 0.0027 23.4 4.7 33 15-50 6-38 (261)
365 cd01976 Nitrogenase_MoFe_alpha 28.4 86 0.0019 26.9 4.0 27 118-147 368-394 (421)
366 PRK05428 HPr kinase/phosphoryl 28.3 3.4E+02 0.0075 22.4 7.3 47 98-150 68-116 (308)
367 TIGR01744 XPRTase xanthine pho 28.3 1.3E+02 0.0029 22.8 4.7 31 118-148 49-81 (191)
368 CHL00175 minD septum-site dete 28.2 1.6E+02 0.0035 23.2 5.4 38 15-52 15-54 (281)
369 PHA02519 plasmid partition pro 28.2 1.5E+02 0.0032 25.2 5.3 38 13-50 104-143 (387)
370 TIGR01285 nifN nitrogenase mol 28.2 1E+02 0.0022 26.5 4.4 37 118-154 235-272 (432)
371 TIGR03026 NDP-sugDHase nucleot 28.1 96 0.0021 26.3 4.2 31 16-51 2-32 (411)
372 cd01147 HemV-2 Metal binding p 28.1 1E+02 0.0022 23.8 4.1 31 119-149 74-107 (262)
373 PRK00455 pyrE orotate phosphor 28.0 1.6E+02 0.0035 22.3 5.1 30 119-148 64-95 (202)
374 PRK12311 rpsB 30S ribosomal pr 28.0 40 0.00086 28.1 1.8 32 119-150 152-185 (326)
375 PRK00652 lpxK tetraacyldisacch 27.9 1.3E+02 0.0027 25.1 4.7 36 16-51 51-88 (325)
376 COG1432 Uncharacterized conser 27.8 1.5E+02 0.0032 22.3 4.7 34 14-52 111-144 (181)
377 PF03796 DnaB_C: DnaB-like hel 27.7 1.4E+02 0.003 23.4 4.8 38 17-54 22-60 (259)
378 PRK09177 xanthine-guanine phos 27.5 1.8E+02 0.0039 21.2 5.1 26 119-144 31-58 (156)
379 TIGR01286 nifK nitrogenase mol 27.5 1.2E+02 0.0026 26.9 4.8 26 118-146 436-461 (515)
380 TIGR03453 partition_RepA plasm 27.4 1.5E+02 0.0033 24.9 5.3 41 12-52 101-143 (387)
381 PRK00207 sulfur transfer compl 27.4 1.2E+02 0.0026 21.4 4.0 33 19-51 7-41 (128)
382 PF09001 DUF1890: Domain of un 27.3 72 0.0016 23.2 2.8 25 28-52 13-37 (139)
383 PRK06079 enoyl-(acyl carrier p 27.2 1.3E+02 0.0029 23.2 4.6 32 15-49 7-40 (252)
384 PF12846 AAA_10: AAA-like doma 27.1 1.2E+02 0.0027 23.6 4.5 35 14-48 1-35 (304)
385 PRK10669 putative cation:proto 27.1 65 0.0014 28.6 3.1 34 14-52 417-450 (558)
386 COG0451 WcaG Nucleoside-diphos 27.1 1.1E+02 0.0024 24.1 4.2 21 32-52 14-34 (314)
387 cd01965 Nitrogenase_MoFe_beta_ 27.1 1.2E+02 0.0026 25.9 4.6 38 118-155 222-261 (428)
388 TIGR03325 BphB_TodD cis-2,3-di 27.0 1.3E+02 0.0029 23.2 4.6 33 15-50 5-37 (262)
389 PRK09922 UDP-D-galactose:(gluc 26.9 1.4E+02 0.003 24.4 4.9 37 16-52 2-43 (359)
390 cd00860 ThrRS_anticodon ThrRS 26.9 1.5E+02 0.0032 18.6 4.2 34 16-50 3-36 (91)
391 PRK13768 GTPase; Provisional 26.9 1.5E+02 0.0032 23.4 4.9 37 16-52 4-40 (253)
392 PRK05703 flhF flagellar biosyn 26.9 1.5E+02 0.0032 25.6 5.1 40 14-53 221-262 (424)
393 TIGR02622 CDP_4_6_dhtase CDP-g 26.8 1.2E+02 0.0027 24.7 4.5 32 15-50 5-36 (349)
394 COG0381 WecB UDP-N-acetylgluco 26.8 1.5E+02 0.0032 25.4 5.0 113 14-146 3-122 (383)
395 TIGR00640 acid_CoA_mut_C methy 26.8 1.9E+02 0.004 20.6 4.9 39 13-51 1-39 (132)
396 PRK00421 murC UDP-N-acetylmura 26.8 89 0.0019 26.9 3.8 32 14-50 7-39 (461)
397 PRK05579 bifunctional phosphop 26.7 82 0.0018 26.9 3.5 38 14-52 6-43 (399)
398 PRK01710 murD UDP-N-acetylmura 26.6 84 0.0018 27.1 3.6 32 14-50 14-45 (458)
399 cd01122 GP4d_helicase GP4d_hel 26.6 1.4E+02 0.0029 23.4 4.6 38 16-53 32-70 (271)
400 cd02069 methionine_synthase_B1 26.6 1.2E+02 0.0025 23.5 4.1 39 14-52 139-177 (213)
401 TIGR01689 EcbF-BcbF capsule bi 26.5 96 0.0021 22.0 3.3 25 30-54 28-52 (126)
402 PRK05973 replicative DNA helic 26.4 1.3E+02 0.0029 23.7 4.5 38 17-54 67-104 (237)
403 PRK05912 tyrosyl-tRNA syntheta 26.4 71 0.0015 27.4 3.1 34 17-51 38-74 (408)
404 COG4559 ABC-type hemin transpo 26.4 81 0.0018 25.1 3.1 39 16-54 161-203 (259)
405 PRK08674 bifunctional phosphog 26.3 3.7E+02 0.008 22.1 10.4 55 14-69 78-132 (337)
406 PLN02712 arogenate dehydrogena 26.3 79 0.0017 29.0 3.5 45 2-51 357-401 (667)
407 PF06564 YhjQ: YhjQ protein; 26.2 1.6E+02 0.0034 23.5 4.8 37 15-51 2-39 (243)
408 TIGR01470 cysG_Nterm siroheme 26.2 87 0.0019 24.0 3.3 35 13-52 8-42 (205)
409 PRK07889 enoyl-(acyl carrier p 26.2 1.3E+02 0.0029 23.2 4.5 32 15-49 7-40 (256)
410 PF13604 AAA_30: AAA domain; P 26.2 1.8E+02 0.004 21.8 5.1 37 16-52 20-56 (196)
411 TIGR01963 PHB_DH 3-hydroxybuty 26.1 1.4E+02 0.003 22.7 4.5 31 18-51 4-34 (255)
412 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.1 1.6E+02 0.0035 19.9 4.5 40 15-55 47-86 (126)
413 TIGR01849 PHB_depoly_PhaZ poly 26.1 97 0.0021 26.7 3.8 32 15-48 103-135 (406)
414 PRK07231 fabG 3-ketoacyl-(acyl 26.1 75 0.0016 24.1 3.0 22 30-51 17-38 (251)
415 COG1090 Predicted nucleoside-d 25.9 70 0.0015 26.2 2.8 22 31-52 11-32 (297)
416 PRK00054 dihydroorotate dehydr 25.9 1.9E+02 0.0041 22.5 5.3 38 13-52 101-138 (250)
417 PRK12747 short chain dehydroge 25.9 1.5E+02 0.0032 22.7 4.6 31 16-49 5-35 (252)
418 KOG0541 Alkyl hydroperoxide re 25.9 79 0.0017 23.6 2.8 28 24-51 60-87 (171)
419 TIGR03772 anch_rpt_subst ancho 25.8 1.6E+02 0.0036 25.9 5.3 40 101-147 409-452 (479)
420 PRK06067 flagellar accessory p 25.8 2E+02 0.0043 22.1 5.3 39 15-53 26-64 (234)
421 PRK09186 flagellin modificatio 25.8 1.5E+02 0.0031 22.7 4.6 32 16-50 5-36 (256)
422 PRK06851 hypothetical protein; 25.8 1.6E+02 0.0035 24.9 5.1 36 17-52 33-68 (367)
423 cd01075 NAD_bind_Leu_Phe_Val_D 25.8 1E+02 0.0022 23.5 3.6 31 14-49 28-58 (200)
424 PLN02828 formyltetrahydrofolat 25.7 1.7E+02 0.0037 23.6 5.0 48 98-148 81-131 (268)
425 cd03109 DTBS Dethiobiotin synt 25.6 1.5E+02 0.0033 20.7 4.3 34 18-51 3-36 (134)
426 PRK12377 putative replication 25.6 1.6E+02 0.0035 23.4 4.8 37 15-51 102-138 (248)
427 PRK13982 bifunctional SbtC-lik 25.6 1E+02 0.0022 27.1 3.9 38 14-52 70-107 (475)
428 PRK10490 sensor protein KdpD; 25.5 1.1E+02 0.0023 29.2 4.3 38 14-51 24-61 (895)
429 PRK02277 orotate phosphoribosy 25.5 1.9E+02 0.0042 22.0 5.1 32 118-149 84-117 (200)
430 COG3433 Aryl carrier domain [S 25.4 37 0.00081 21.8 0.9 22 29-50 32-53 (74)
431 PRK09183 transposase/IS protei 25.3 1.8E+02 0.0039 23.1 5.1 38 14-51 102-139 (259)
432 PRK05802 hypothetical protein; 25.3 1.5E+02 0.0032 24.4 4.7 38 14-53 172-209 (320)
433 PF09140 MipZ: ATPase MipZ; I 25.3 1.2E+02 0.0026 24.5 4.0 40 16-55 1-42 (261)
434 cd01020 TroA_b Metal binding p 25.3 1.8E+02 0.0039 23.0 5.1 39 101-146 195-238 (264)
435 PF07894 DUF1669: Protein of u 25.3 1.5E+02 0.0032 24.3 4.5 45 99-148 133-182 (284)
436 TIGR02845 spore_V_AD stage V s 25.2 3.1E+02 0.0068 22.9 6.5 51 118-168 70-123 (327)
437 cd06533 Glyco_transf_WecG_TagA 25.2 2.8E+02 0.0061 20.4 7.2 86 30-145 34-129 (171)
438 KOG0332 ATP-dependent RNA heli 25.2 78 0.0017 27.2 3.0 24 30-53 342-365 (477)
439 COG0313 Predicted methyltransf 25.1 2E+02 0.0043 23.4 5.2 41 119-159 78-125 (275)
440 PRK11064 wecC UDP-N-acetyl-D-m 25.1 1.2E+02 0.0026 25.9 4.3 32 15-51 4-35 (415)
441 PLN02211 methyl indole-3-aceta 25.1 1.7E+02 0.0038 23.0 5.0 37 14-51 18-54 (273)
442 COG0552 FtsY Signal recognitio 25.1 1.6E+02 0.0036 24.7 4.8 39 16-54 141-179 (340)
443 PTZ00318 NADH dehydrogenase-li 25.0 95 0.002 26.4 3.6 35 14-53 10-44 (424)
444 PRK08304 stage V sporulation p 25.0 2.8E+02 0.006 23.3 6.2 51 118-168 76-129 (337)
445 PRK13609 diacylglycerol glucos 25.0 1.7E+02 0.0037 24.0 5.2 30 118-147 103-134 (380)
446 PF01935 DUF87: Domain of unkn 24.9 1.6E+02 0.0035 22.4 4.7 45 6-50 12-60 (229)
447 cd01966 Nitrogenase_NifN_1 Nit 24.9 1.2E+02 0.0027 25.9 4.3 38 118-155 224-262 (417)
448 PRK12404 stage V sporulation p 24.8 2.4E+02 0.0053 23.6 5.8 37 118-154 74-113 (334)
449 PLN00141 Tic62-NAD(P)-related 24.8 1.9E+02 0.004 22.3 5.1 33 14-50 17-49 (251)
450 PRK06851 hypothetical protein; 24.8 2.5E+02 0.0053 23.9 6.0 41 14-54 214-254 (367)
451 PRK06101 short chain dehydroge 24.7 81 0.0018 24.1 3.0 21 30-50 13-33 (240)
452 PRK12814 putative NADPH-depend 24.5 1E+02 0.0023 28.0 4.0 36 11-51 190-225 (652)
453 PRK15043 transcriptional regul 24.4 3.7E+02 0.008 21.4 6.8 53 16-69 164-216 (243)
454 PRK11259 solA N-methyltryptoph 24.4 75 0.0016 26.1 2.8 32 15-51 4-35 (376)
455 PRK08560 tyrosyl-tRNA syntheta 24.3 86 0.0019 26.0 3.2 27 26-53 46-72 (329)
456 PF07991 IlvN: Acetohydroxy ac 24.3 70 0.0015 24.0 2.3 35 14-53 4-38 (165)
457 cd01143 YvrC Periplasmic bindi 24.3 1.5E+02 0.0033 21.6 4.3 30 119-148 60-90 (195)
458 PF08897 DUF1841: Domain of un 24.2 54 0.0012 23.8 1.7 19 23-41 57-75 (137)
459 PRK12743 oxidoreductase; Provi 24.2 1.6E+02 0.0035 22.6 4.6 21 30-50 14-34 (256)
460 PRK10037 cell division protein 24.2 1.7E+02 0.0036 22.8 4.7 37 16-52 3-40 (250)
461 PRK13230 nitrogenase reductase 24.2 1.8E+02 0.0039 23.1 4.9 37 15-51 2-38 (279)
462 TIGR03574 selen_PSTK L-seryl-t 24.2 1.3E+02 0.0028 23.4 4.0 35 17-51 2-36 (249)
463 TIGR03087 stp1 sugar transfera 24.2 68 0.0015 26.7 2.6 32 20-52 8-40 (397)
464 PRK14573 bifunctional D-alanyl 24.1 1E+02 0.0022 28.9 3.8 32 14-49 4-35 (809)
465 PRK08277 D-mannonate oxidoredu 24.1 1.6E+02 0.0036 22.8 4.7 33 15-50 10-42 (278)
466 PRK04280 arginine repressor; P 24.1 58 0.0012 23.8 1.9 20 32-51 22-41 (148)
467 PLN02775 Probable dihydrodipic 24.0 1.7E+02 0.0036 24.0 4.7 28 14-46 11-39 (286)
468 TIGR01287 nifH nitrogenase iro 24.0 1.5E+02 0.0033 23.3 4.5 36 16-51 2-37 (275)
469 TIGR01969 minD_arch cell divis 24.0 1.6E+02 0.0036 22.4 4.6 36 17-52 3-39 (251)
470 PRK11524 putative methyltransf 24.0 1.4E+02 0.003 24.0 4.2 34 118-151 206-241 (284)
471 PRK10481 hypothetical protein; 24.0 1.6E+02 0.0035 23.1 4.5 43 100-149 170-215 (224)
472 PRK06194 hypothetical protein; 23.9 81 0.0018 24.7 2.9 21 30-50 18-38 (287)
473 PRK05854 short chain dehydroge 23.9 2.3E+02 0.0049 22.8 5.6 34 14-50 13-46 (313)
474 cd03466 Nitrogenase_NifN_2 Nit 23.9 1.5E+02 0.0033 25.4 4.7 38 118-155 221-262 (429)
475 COG1028 FabG Dehydrogenases wi 23.8 1.8E+02 0.0039 22.1 4.8 36 14-52 4-39 (251)
476 TIGR03018 pepcterm_TyrKin exop 23.7 2.3E+02 0.005 21.3 5.3 39 14-52 34-75 (207)
477 PLN02891 IMP cyclohydrolase 23.7 1.3E+02 0.0028 27.0 4.1 47 27-76 31-78 (547)
478 PF04720 DUF506: Protein of un 23.7 1.8E+02 0.0039 22.8 4.6 22 31-52 90-111 (218)
479 TIGR02990 ectoine_eutA ectoine 23.6 2E+02 0.0044 22.7 5.0 29 118-146 180-212 (239)
480 TIGR01832 kduD 2-deoxy-D-gluco 23.6 1.7E+02 0.0037 22.2 4.6 32 16-50 6-37 (248)
481 PRK05653 fabG 3-ketoacyl-(acyl 23.5 88 0.0019 23.5 2.9 22 30-51 17-38 (246)
482 PF10673 DUF2487: Protein of u 23.5 1.8E+02 0.004 21.1 4.3 41 14-54 49-97 (142)
483 PRK02304 adenine phosphoribosy 23.4 1.9E+02 0.004 21.4 4.6 28 119-146 51-80 (175)
484 PLN02686 cinnamoyl-CoA reducta 23.4 2.1E+02 0.0045 23.8 5.3 22 29-50 64-85 (367)
485 PRK12827 short chain dehydroge 23.4 84 0.0018 23.8 2.8 32 15-50 7-38 (249)
486 PRK06179 short chain dehydroge 23.4 88 0.0019 24.2 3.0 32 17-51 6-37 (270)
487 PRK08862 short chain dehydroge 23.3 1.5E+02 0.0032 22.7 4.2 33 15-50 5-37 (227)
488 PRK07666 fabG 3-ketoacyl-(acyl 23.2 91 0.002 23.6 3.0 23 29-51 18-40 (239)
489 PF03721 UDPG_MGDP_dh_N: UDP-g 23.2 95 0.0021 23.3 3.0 31 16-51 2-32 (185)
490 PRK12409 D-amino acid dehydrog 23.2 78 0.0017 26.5 2.8 31 16-51 3-33 (410)
491 PF01494 FAD_binding_3: FAD bi 23.2 87 0.0019 24.9 3.0 23 30-52 12-34 (356)
492 CHL00203 fabH 3-oxoacyl-acyl-c 23.0 2.5E+02 0.0054 22.8 5.7 69 97-170 228-302 (326)
493 PRK14493 putative bifunctional 23.0 1.7E+02 0.0037 23.6 4.5 34 16-50 3-36 (274)
494 PRK01175 phosphoribosylformylg 23.0 4E+02 0.0086 21.3 8.7 53 14-69 3-55 (261)
495 PF01726 LexA_DNA_bind: LexA D 22.9 1.8E+02 0.0039 17.9 3.7 34 128-170 24-57 (65)
496 cd05013 SIS_RpiR RpiR-like pro 22.9 2.1E+02 0.0046 19.2 4.6 32 23-54 68-99 (139)
497 COG3959 Transketolase, N-termi 22.8 2.2E+02 0.0047 22.7 4.9 36 17-52 113-151 (243)
498 PRK14476 nitrogenase molybdenu 22.8 1.4E+02 0.0031 25.9 4.3 34 118-151 235-269 (455)
499 PRK12825 fabG 3-ketoacyl-(acyl 22.8 92 0.002 23.4 2.9 33 15-51 7-39 (249)
500 PLN02487 zeta-carotene desatur 22.8 2.2E+02 0.0048 25.6 5.6 33 14-51 75-107 (569)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.94 E-value=4.7e-25 Score=188.23 Aligned_cols=144 Identities=34% Similarity=0.664 Sum_probs=115.8
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC-CCCCceEEEcCCCCCCCC-CCCCCCCCCHHHHHH
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC-NYPHFEFCSFSDDGFSET-YQPSKVADDIPALLL 91 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~-~~~~i~~~~l~~~~~p~~-~~~~~~~~~~~~~~~ 91 (176)
+.||+++|+|++||++||++||++|++||+.|||+++..+..... ..++|++..++ +++|++ .+ ......++.
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip-~glp~~~~~----~~~~~~~~~ 81 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIP-ESLPESDFK----NLGPIEFLH 81 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCC-CCCCccccc----ccCHHHHHH
Confidence 569999999999999999999999999999999999987643211 12479999999 788763 21 112334555
Q ss_pred HHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhHhHHhC
Q 030502 92 SLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPILREK 166 (176)
Q Consensus 92 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~l~~~ 166 (176)
.+.+.+...++++++++..+.. .+++|||+|++++|+.++|+++|||+++||+++++.++++++++.+...
T Consensus 82 ~~~~~~~~~~~~~L~~l~~~~~----~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 152 (451)
T PLN02410 82 KLNKECQVSFKDCLGQLVLQQG----NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYAN 152 (451)
T ss_pred HHHHHhHHHHHHHHHHHHhccC----CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhc
Confidence 5666777888888887643222 4689999999999999999999999999999999999999988777654
No 2
>PLN02562 UDP-glycosyltransferase
Probab=99.93 E-value=3.8e-25 Score=188.82 Aligned_cols=143 Identities=27% Similarity=0.341 Sum_probs=114.8
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC----CCCCceEEEcCCCCCCCCCCCCCCCCCHHHH
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC----NYPHFEFCSFSDDGFSETYQPSKVADDIPAL 89 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~----~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~ 89 (176)
+.||+++|+|++||++||++||+.|+++|+.||++++..+.+... ..++|+++.++ ++.+++. ..++..+
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp-~g~~~~~-----~~~~~~l 79 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSIS-DGQDDDP-----PRDFFSI 79 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECC-CCCCCCc-----cccHHHH
Confidence 469999999999999999999999999999999999987654321 12469999998 6665321 1234444
Q ss_pred HHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhHhHHhCCC
Q 030502 90 LLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPILREKGY 168 (176)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~l~~~~~ 168 (176)
+..+...+.+.++++++++... .+++|||+|++++|+.++|+++|||+++||+++++.++++++++.+...+.
T Consensus 80 ~~a~~~~~~~~l~~ll~~l~~~------~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~ 152 (448)
T PLN02562 80 ENSMENTMPPQLERLLHKLDED------GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGL 152 (448)
T ss_pred HHHHHHhchHHHHHHHHHhcCC------CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccc
Confidence 4555446788889998877432 357999999999999999999999999999999999999999987766543
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.92 E-value=3.6e-24 Score=182.56 Aligned_cols=138 Identities=24% Similarity=0.361 Sum_probs=111.6
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC--CCCCceEEEcCCCCCCCC-CCCCCCCCCHHHH
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC--NYPHFEFCSFSDDGFSET-YQPSKVADDIPAL 89 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~--~~~~i~~~~l~~~~~p~~-~~~~~~~~~~~~~ 89 (176)
++.||+++|+|++||++||++|||+|+++|+.|||++++.+..... ..++|+++.++ +++|++ .+. ..+...+
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ip-dglp~~~~~~---~~~~~~~ 79 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATIS-DGYDQGGFSS---AGSVPEY 79 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcC-CCCCCccccc---ccCHHHH
Confidence 3579999999999999999999999999999999999987643321 22469999999 888863 221 2234566
Q ss_pred HHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHh
Q 030502 90 LLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAA 159 (176)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 159 (176)
+..+.+.+.+.++++++++..+. .+++|||+|+|++|+.++|+++|||+++||+++++.+++|++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~-----~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 80 LQNFKTFGSKTVADIIRKHQSTD-----NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred HHHHHHhhhHHHHHHHHHhhccC-----CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 67676678889999988764321 346999999999999999999999999999999998877764
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.92 E-value=1.7e-24 Score=185.99 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=108.1
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC----CCCCceEEEcCC---CCCCCCCCCCCC-CC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC----NYPHFEFCSFSD---DGFSETYQPSKV-AD 84 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~----~~~~i~~~~l~~---~~~p~~~~~~~~-~~ 84 (176)
.+.||+++|+|++||++||++|||.|+++|+.|||++|+.+.+... ..++|+++.++. +++|++.++..+ ..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~ 87 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPP 87 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcch
Confidence 3789999999999999999999999999999999999998754321 124688887761 356666543221 11
Q ss_pred CHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhHh
Q 030502 85 DIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPI 162 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~ 162 (176)
+....+......+.+.++++++++ + .+++|||+|++++|+.++|+++|||+++||+++++.+++|++++.
T Consensus 88 ~~~~~~~~a~~~~~~~~~~~l~~~---~-----~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 88 SGFPLMIHALGELYAPLLSWFRSH---P-----SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHhC---C-----CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 222233333345556666666553 1 368999999999999999999999999999999999999999764
No 5
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.92 E-value=4.6e-24 Score=182.84 Aligned_cols=147 Identities=25% Similarity=0.341 Sum_probs=118.2
Q ss_pred CCCCCceEEEecCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCC---CCCceEEEcCCCCCCCCCCCCCCCC
Q 030502 10 LPRNRRRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCN---YPHFEFCSFSDDGFSETYQPSKVAD 84 (176)
Q Consensus 10 ~~~~~~~Il~vp~p~~GH~~P~l~La~~La~r--Gh~VT~i~~~~~~~~~~~---~~~i~~~~l~~~~~p~~~~~~~~~~ 84 (176)
-+..+.||+++|+|++||++||++||++|++| ||+|||++++.+...... .++++|+.++ ++.|++.+. ..
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp-~~~p~~~~~---~~ 81 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIP-NVIPSELVR---AA 81 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECC-CCCCCcccc---cc
Confidence 35568899999999999999999999999999 999999999987543322 2479999999 766654321 23
Q ss_pred CHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhHhHH
Q 030502 85 DIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPILR 164 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~l~ 164 (176)
+...++..+.+.+.+.++++++++. .++||||+|.++.|+.++|+++|||++.||++++..++.+++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 82 DFPGFLEAVMTKMEAPFEQLLDRLE--------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHhcC--------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 4445555555567778888887763 37899999999999999999999999999999999999999988766
Q ss_pred hCCC
Q 030502 165 EKGY 168 (176)
Q Consensus 165 ~~~~ 168 (176)
+.+.
T Consensus 154 ~~~~ 157 (459)
T PLN02448 154 QNGH 157 (459)
T ss_pred hccC
Confidence 5433
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.92 E-value=7.4e-24 Score=180.88 Aligned_cols=142 Identities=24% Similarity=0.367 Sum_probs=113.7
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCC-CCC-CC---CCCCceEEEcCCCCCCCCCCCCCCCCCH
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYS-EGFSITIIHTTLN-SPN-SC---NYPHFEFCSFSDDGFSETYQPSKVADDI 86 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~-rGh~VT~i~~~~~-~~~-~~---~~~~i~~~~l~~~~~p~~~~~~~~~~~~ 86 (176)
++.||+++|+|++||+|||++|||+|++ +|+.|||+++..+ .+. .. ..++|+|+.++ +++|++.+. ...+.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-dglp~g~~~--~~~~~ 78 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-DGFDDGVIS--NTDDV 78 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-CCCCCcccc--ccccH
Confidence 3569999999999999999999999996 7999999999854 221 11 12369999998 888765321 12344
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhHh
Q 030502 87 PALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPI 162 (176)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~ 162 (176)
..++..+.+.+.+.++++++++...+ .+++|||+|++++|+.++|+++|||.++||+++++++++|++++.
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~l~~~~-----~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 79 QNRLVNFERNGDKALSDFIEANLNGD-----SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhccC-----CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 45566666788899999998874321 367999999999999999999999999999999999999998763
No 7
>PLN02670 transferase, transferring glycosyl groups
Probab=99.92 E-value=5.3e-24 Score=182.40 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC-----CCCCceEEEcCC---CCCCCCCCCCCCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC-----NYPHFEFCSFSD---DGFSETYQPSKVAD 84 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~-----~~~~i~~~~l~~---~~~p~~~~~~~~~~ 84 (176)
.+.||+++|+|++||++||++|||+|++||+.|||++++.+..... ..++|+++.++. +++|++.++..+..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~ 84 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVP 84 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccc
Confidence 3679999999999999999999999999999999999987753322 123689999882 45665533211111
Q ss_pred -CHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhHhH
Q 030502 85 -DIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPIL 163 (176)
Q Consensus 85 -~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~l 163 (176)
....++....+.+.+.++++++++ +++|||+|+|++|+.++|+++|||+++|++++++.++++++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 85 YTKQQLLKKAFDLLEPPLTTFLETS----------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhC----------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 112234444455666666666543 689999999999999999999999999999999999998877655
Q ss_pred HhCCC
Q 030502 164 REKGY 168 (176)
Q Consensus 164 ~~~~~ 168 (176)
...|.
T Consensus 155 ~~~~~ 159 (472)
T PLN02670 155 MEGGD 159 (472)
T ss_pred hhccc
Confidence 44443
No 8
>PLN02555 limonoid glucosyltransferase
Probab=99.92 E-value=6.1e-24 Score=182.43 Aligned_cols=139 Identities=25% Similarity=0.362 Sum_probs=110.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC----------C---CCCceEEEcCCCCCCCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC----------N---YPHFEFCSFSDDGFSETYQPS 80 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~----------~---~~~i~~~~l~~~~~p~~~~~~ 80 (176)
++||+++|+|++||+|||++||+.|+++|..|||++++.+..... . ...++|..++ +++|++.+.
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p-dglp~~~~~- 84 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE-DGWAEDDPR- 84 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-CCCCCCccc-
Confidence 579999999999999999999999999999999999986543211 0 0125666677 777765431
Q ss_pred CCCCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhh
Q 030502 81 KVADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAF 160 (176)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~ 160 (176)
..+...++..+.+.+.+.++++++++...+ ++++|||+|++++|+.++|+++|||.++||+++++.+++|+++
T Consensus 85 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 85 --RQDLDLYLPQLELVGKREIPNLVKRYAEQG-----RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred --ccCHHHHHHHHHHhhhHHHHHHHHHHhccC-----CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 224445666666667888999988764321 4569999999999999999999999999999999999999988
Q ss_pred H
Q 030502 161 P 161 (176)
Q Consensus 161 p 161 (176)
+
T Consensus 158 ~ 158 (480)
T PLN02555 158 Y 158 (480)
T ss_pred h
Confidence 5
No 9
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.91 E-value=2.4e-23 Score=179.27 Aligned_cols=144 Identities=20% Similarity=0.261 Sum_probs=104.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCCCCC-------C---CC--CCCceEEEcCCCCCCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEG--FSITIIHTTLNSPN-------S---CN--YPHFEFCSFSDDGFSETYQP 79 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rG--h~VT~i~~~~~~~~-------~---~~--~~~i~~~~l~~~~~p~~~~~ 79 (176)
|.||+++|+|++||++||++|||+|+++| ..|||++++.+... . .. .++|+++.++ ++.++.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~~~--- 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVIS-AGDQPT--- 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcC-CCCCCc---
Confidence 67999999999999999999999999998 88999999866321 1 01 2369999998 554321
Q ss_pred CCCCCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHh
Q 030502 80 SKVADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAA 159 (176)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 159 (176)
........ +...+.+.+++.++++.....+...++++|||+|++++|+.++|+++|||++.||+++++++++++|
T Consensus 78 -~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 78 -TEDPTFQS----YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred -ccchHHHH----HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 01111222 2334455566665555321000000246999999999999999999999999999999999999999
Q ss_pred hHhHHhC
Q 030502 160 FPILREK 166 (176)
Q Consensus 160 ~p~l~~~ 166 (176)
+|.+.+.
T Consensus 153 ~~~~~~~ 159 (481)
T PLN02554 153 VQMLYDE 159 (481)
T ss_pred hhhhccc
Confidence 9876543
No 10
>PLN02534 UDP-glycosyltransferase
Probab=99.90 E-value=3.5e-23 Score=178.09 Aligned_cols=139 Identities=19% Similarity=0.288 Sum_probs=104.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC------C--CCCceEEEcCC----CCCCCCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC------N--YPHFEFCSFSD----DGFSETYQPSK 81 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~------~--~~~i~~~~l~~----~~~p~~~~~~~ 81 (176)
+.||+++|+|++||++||++||+.|++||+.|||++++.+..... . ...|+|+.++. +++|++.++..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 579999999999999999999999999999999999987643211 1 12389999871 46776644322
Q ss_pred CCC--CHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHh
Q 030502 82 VAD--DIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAA 159 (176)
Q Consensus 82 ~~~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 159 (176)
+.. +....+....+.+.+.+++++++. + .+++|||+|++++|+.++|+++|||.++||+++++.++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~----~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQA----K----PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhc----C----CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 111 222223333345566677776543 1 468999999999999999999999999999999999998766
Q ss_pred h
Q 030502 160 F 160 (176)
Q Consensus 160 ~ 160 (176)
+
T Consensus 160 ~ 160 (491)
T PLN02534 160 I 160 (491)
T ss_pred H
Confidence 5
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.90 E-value=6.1e-23 Score=176.16 Aligned_cols=140 Identities=17% Similarity=0.291 Sum_probs=107.5
Q ss_pred CCCceEEEecCCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCCCCCC----CCCCCceEEEcCC---CCCCCCCCCCCCC
Q 030502 12 RNRRRVILFPLPFQGHINPMLQLGSILY-SEGFSITIIHTTLNSPNS----CNYPHFEFCSFSD---DGFSETYQPSKVA 83 (176)
Q Consensus 12 ~~~~~Il~vp~p~~GH~~P~l~La~~La-~rGh~VT~i~~~~~~~~~----~~~~~i~~~~l~~---~~~p~~~~~~~~~ 83 (176)
+.++||+++|+|++||++||++|||.|+ ++|+.|||++++.+.... ...++|+++.++. +++|+. .
T Consensus 3 ~~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~------~ 76 (481)
T PLN02992 3 ITKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDP------S 76 (481)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCC------C
Confidence 3478999999999999999999999998 789999999999764321 1224699999882 133211 1
Q ss_pred CCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhHhH
Q 030502 84 DDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPIL 163 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~l 163 (176)
.+....+....+.+.+.++++++++. .+++|||+|++++|+.++|+++|||+++||+++++.++++.|+|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 148 (481)
T PLN02992 77 AHVVTKIGVIMREAVPTLRSKIAEMH--------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTL 148 (481)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHhcC--------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhh
Confidence 12222333344556677888877652 3689999999999999999999999999999999999999998865
Q ss_pred Hh
Q 030502 164 RE 165 (176)
Q Consensus 164 ~~ 165 (176)
.+
T Consensus 149 ~~ 150 (481)
T PLN02992 149 DK 150 (481)
T ss_pred cc
Confidence 43
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=99.90 E-value=1e-22 Score=175.22 Aligned_cols=137 Identities=20% Similarity=0.239 Sum_probs=108.3
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCC----CEEEEEeCCCCCC----CC-------C-CCCCceEEEcCCCCC-CC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEG----FSITIIHTTLNSP----NS-------C-NYPHFEFCSFSDDGF-SE 75 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rG----h~VT~i~~~~~~~----~~-------~-~~~~i~~~~l~~~~~-p~ 75 (176)
.+.||+++|+|++||++||++||++|++|| +.|||+++..+.. .. . ...+|+++.++ ++. |+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~p~ 80 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLP-AVEPPT 80 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECC-CCCCCC
Confidence 467999999999999999999999999997 7899999875421 10 0 11259999998 543 32
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHH
Q 030502 76 TYQPSKVADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASL 155 (176)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~ 155 (176)
+ ..+...++..+.+.+.+.++++++++. .+++|||+|++++|+.++|+++|||++.||++++++++
T Consensus 81 ~------~e~~~~~~~~~~~~~~~~l~~~L~~l~--------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~ 146 (480)
T PLN00164 81 D------AAGVEEFISRYIQLHAPHVRAAIAGLS--------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLA 146 (480)
T ss_pred c------cccHHHHHHHHHHhhhHHHHHHHHhcC--------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHH
Confidence 2 123334555566677778888887651 36899999999999999999999999999999999999
Q ss_pred HHHhhHhHH
Q 030502 156 SYAAFPILR 164 (176)
Q Consensus 156 ~~~~~p~l~ 164 (176)
+++++|.+.
T Consensus 147 ~~~~~~~~~ 155 (480)
T PLN00164 147 LMLRLPALD 155 (480)
T ss_pred HHhhhhhhc
Confidence 999998754
No 13
>PLN02210 UDP-glucosyl transferase
Probab=99.90 E-value=7.4e-23 Score=175.10 Aligned_cols=134 Identities=25% Similarity=0.360 Sum_probs=104.8
Q ss_pred CCCceEEEecCCCCCChHHHHHHHHH--HHhCCCEEEEEeCCCCCCCCCC----CCCceEEEcCCCCCCCCCCCCCCCCC
Q 030502 12 RNRRRVILFPLPFQGHINPMLQLGSI--LYSEGFSITIIHTTLNSPNSCN----YPHFEFCSFSDDGFSETYQPSKVADD 85 (176)
Q Consensus 12 ~~~~~Il~vp~p~~GH~~P~l~La~~--La~rGh~VT~i~~~~~~~~~~~----~~~i~~~~l~~~~~p~~~~~~~~~~~ 85 (176)
..+.||+++|+|++||+||+++||++ |++||+.|||++++.+.+.... .+.+++..++ +++|++.+ .+
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-~glp~~~~-----~~ 79 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-DGLPKDDP-----RA 79 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC-CCCCCCcc-----cC
Confidence 34679999999999999999999999 5699999999999986543321 2357777777 77776531 23
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhH
Q 030502 86 IPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFP 161 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p 161 (176)
...++..+.+.+.+.+++++++ .++||||+|.+++|+.++|+++|||.++||+.+++.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~----------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 80 PETLLKSLNKVGAKNLSKIIEE----------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred HHHHHHHHHHhhhHHHHHHHhc----------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 3345555555555555555543 36999999999999999999999999999999999999988765
No 14
>PLN00414 glycosyltransferase family protein
Probab=99.90 E-value=6.4e-23 Score=174.94 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=96.8
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC----CCCceEEEcC--C-CCCCCCCCCCCCCC-
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN----YPHFEFCSFS--D-DGFSETYQPSKVAD- 84 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~----~~~i~~~~l~--~-~~~p~~~~~~~~~~- 84 (176)
.+.||+++|+|++||+|||++|||.|+++|++|||+++..+...+.. .++|+|..++ . +++|++.+...+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 36799999999999999999999999999999999999876543321 1358885554 2 56665533211111
Q ss_pred CHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHh
Q 030502 85 DIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAA 159 (176)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 159 (176)
.....+....+.+.+.++++++. .++||||+|+ ++|+.++|+++|||++.||+++++.++++++
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~----------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~ 146 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRA----------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA 146 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc----------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC
Confidence 11112222223333344443321 3679999995 8999999999999999999999999999887
No 15
>PLN03004 UDP-glycosyltransferase
Probab=99.89 E-value=2.6e-22 Score=171.21 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=105.9
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCC--CEEEE--EeCCCCCCC-------C-CCCCCceEEEcCCCCCCCCCCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEG--FSITI--IHTTLNSPN-------S-CNYPHFEFCSFSDDGFSETYQPS 80 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rG--h~VT~--i~~~~~~~~-------~-~~~~~i~~~~l~~~~~p~~~~~~ 80 (176)
++.||+++|+|++||++||++|||+|+++| +.||+ +++..+... . ...++|+|+.++ ++.+..-..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~~~~~~- 79 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLP-AVTPYSSSS- 79 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcC-CCCCCCCcc-
Confidence 467999999999999999999999999998 45555 555443211 0 112469999998 654321110
Q ss_pred CCCCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhh
Q 030502 81 KVADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAF 160 (176)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~ 160 (176)
....+...++....+.+...++++++++... ++++|||+|++++|+.++|+++|||.++||+++++.+++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~ 153 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNPSVHRTLFSLSRN------FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYL 153 (451)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHhcCCC------CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHH
Confidence 0112333344444556778888888876321 3679999999999999999999999999999999999999998
Q ss_pred HhHH
Q 030502 161 PILR 164 (176)
Q Consensus 161 p~l~ 164 (176)
|...
T Consensus 154 ~~~~ 157 (451)
T PLN03004 154 PTID 157 (451)
T ss_pred Hhcc
Confidence 8643
No 16
>PLN02208 glycosyltransferase family protein
Probab=99.89 E-value=8.9e-23 Score=173.91 Aligned_cols=136 Identities=13% Similarity=0.134 Sum_probs=97.0
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC----CCCceEEEcCC---CCCCCCCCCCCC-CCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN----YPHFEFCSFSD---DGFSETYQPSKV-ADD 85 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~----~~~i~~~~l~~---~~~p~~~~~~~~-~~~ 85 (176)
+.||+++|+|++||++|+++||++|++||++|||+++..+...+.. .+++++..++. +++|++.+.... ..+
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~ 83 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPIS 83 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHH
Confidence 6799999999999999999999999999999999998876543221 13577777651 456655331100 011
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhH
Q 030502 86 IPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFP 161 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p 161 (176)
+..++....+.+.+.+++++++ .++||||+| +++|+.++|+++|||++.||+++++.++ ++|++
T Consensus 84 l~~~~~~~~~~~~~~l~~~L~~----------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 84 MDNLLSEALDLTRDQVEAAVRA----------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC
Confidence 1222222233444445555543 268999999 5799999999999999999999999876 77765
No 17
>PLN02207 UDP-glycosyltransferase
Probab=99.89 E-value=5.5e-22 Score=169.87 Aligned_cols=148 Identities=19% Similarity=0.244 Sum_probs=105.2
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCCC-CC----C----CCCCCceEEEcCCCCCCCCCCCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEG--FSITIIHTTLNS-PN----S----CNYPHFEFCSFSDDGFSETYQPSK 81 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rG--h~VT~i~~~~~~-~~----~----~~~~~i~~~~l~~~~~p~~~~~~~ 81 (176)
+++||+++|+|++||++||++||+.|+++| ..|||+++..+. .. . ...++|+|+.++ +..... +. .
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~~~-~~-~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVP-ELEEKP-TL-G 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeC-CCCCCC-cc-c
Confidence 578999999999999999999999999998 999999998654 11 1 112469999999 432211 00 0
Q ss_pred CCCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHhhH
Q 030502 82 VADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFP 161 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p 161 (176)
...+...++....+.+...+++.++++..+.... .++++|||+|++++|+.++|+++|||.++||+++++.++++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALD-GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccC-CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 1223444444444556444444444332210000 035699999999999999999999999999999999999999988
Q ss_pred hHH
Q 030502 162 ILR 164 (176)
Q Consensus 162 ~l~ 164 (176)
.+.
T Consensus 158 ~~~ 160 (468)
T PLN02207 158 DRH 160 (468)
T ss_pred hcc
Confidence 654
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.89 E-value=4.5e-22 Score=171.48 Aligned_cols=142 Identities=23% Similarity=0.350 Sum_probs=99.7
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC--------CC----CceEEEcCC--CCCCCCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN--------YP----HFEFCSFSD--DGFSETYQ 78 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~--------~~----~i~~~~l~~--~~~p~~~~ 78 (176)
++.||+++|+|++||+||+++||++|++||++|||++++.+...++. .+ .+.+..++. +++|++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46799999999999999999999999999999999999876533210 11 233444442 35666544
Q ss_pred CCCC---C-C-CHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHH
Q 030502 79 PSKV---A-D-DIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAA 153 (176)
Q Consensus 79 ~~~~---~-~-~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~ 153 (176)
.... . . +...++..+. ...+.+.+.++++..+ .++||||+|.+++|+.++|+++|||+++||+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~ 156 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFS 156 (482)
T ss_pred cccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHH
Confidence 3211 0 1 1222333332 2233444444444322 378999999999999999999999999999999999
Q ss_pred HHHHHhhH
Q 030502 154 SLSYAAFP 161 (176)
Q Consensus 154 ~~~~~~~p 161 (176)
+++++++.
T Consensus 157 ~~~~~~~~ 164 (482)
T PLN03007 157 LCASYCIR 164 (482)
T ss_pred HHHHHHHH
Confidence 98887654
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.88 E-value=1e-21 Score=168.97 Aligned_cols=148 Identities=21% Similarity=0.260 Sum_probs=103.6
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCC---EEEEEeCCCCCC---C--C----CCCCCceEEEcCCCCC-CCCCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGF---SITIIHTTLNSP---N--S----CNYPHFEFCSFSDDGF-SETYQP 79 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh---~VT~i~~~~~~~---~--~----~~~~~i~~~~l~~~~~-p~~~~~ 79 (176)
+++||+++|+|++||++||++|||+|+++|. .||++++..+.. . . ...++|+|+.++ ++. +++.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~p~~~~~ 80 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLP-EVQDPPPMEL 80 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECC-CCCCCccccc
Confidence 5789999999999999999999999999993 567777543221 0 1 112469999999 443 221110
Q ss_pred CCCCCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHh
Q 030502 80 SKVADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAA 159 (176)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 159 (176)
........+..+.+.+.+.+++.++++..+.....+.+++|||+|+|++|+.++|+++|||+++||+++++.++++++
T Consensus 81 --~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~ 158 (475)
T PLN02167 81 --FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKY 158 (475)
T ss_pred --cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 011111233344456667777777765321100000257999999999999999999999999999999999999999
Q ss_pred hHhH
Q 030502 160 FPIL 163 (176)
Q Consensus 160 ~p~l 163 (176)
+|..
T Consensus 159 ~~~~ 162 (475)
T PLN02167 159 LPER 162 (475)
T ss_pred HHHh
Confidence 8864
No 20
>PLN02764 glycosyltransferase family protein
Probab=99.88 E-value=6.5e-22 Score=168.61 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=99.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC---CC-C--ceEEEcC-CCCCCCCCCCCCCCC-C
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN---YP-H--FEFCSFS-DDGFSETYQPSKVAD-D 85 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~---~~-~--i~~~~l~-~~~~p~~~~~~~~~~-~ 85 (176)
+.||+++|+|++||++||++||+.|+++|+.|||++++.+...... .+ + +++..++ .+++|++.++..+.. .
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~ 84 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVT 84 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChh
Confidence 6799999999999999999999999999999999999876432221 12 3 5566666 256666544221111 1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHHHHHHHh
Q 030502 86 IPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAASLSYAA 159 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 159 (176)
....+....+.+.+.++++++++ ++||||+|+ ++|+.++|+++|||++.||+++++.++++++
T Consensus 85 ~~~~~~~a~~~~~~~~~~~l~~~----------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~ 147 (453)
T PLN02764 85 SADLLMSAMDLTRDQVEVVVRAV----------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV 147 (453)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhC----------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc
Confidence 11223333345566677776553 579999995 8999999999999999999999999999864
No 21
>PLN03015 UDP-glucosyl transferase
Probab=99.88 E-value=1e-21 Score=168.03 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=106.9
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCCCCC------CCC--C-CCceEEEcCCCCCCCCCCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLNSPN------SCN--Y-PHFEFCSFSDDGFSETYQPSKVA 83 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~r-Gh~VT~i~~~~~~~~------~~~--~-~~i~~~~l~~~~~p~~~~~~~~~ 83 (176)
++||+++|+|++||++||++||+.|+++ |..|||+++..+... ... . ++|+++.++ +...+++...+ .
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~~~l~~~~-~ 80 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIP-SVDVDNLVEPD-A 80 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECC-CCccccCCCCC-c
Confidence 5799999999999999999999999987 999999988754321 111 1 259999998 33222211101 1
Q ss_pred CCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCC-eEEEecccHHHHHHHHhhHh
Q 030502 84 DDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLP-TIVLLTDSIAASLSYAAFPI 162 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP-~v~f~~~~a~~~~~~~~~p~ 162 (176)
+....+....+.+.+.++++++++. .+++|||+|+|++|+.++|+++||| +++|++++++.+++++|+|.
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~l~--------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 81 -TIFTKMVVKMRAMKPAVRDAVKSMK--------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred -cHHHHHHHHHHhchHHHHHHHHhcC--------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 3333344455678888999988763 3679999999999999999999999 69999999999999999987
Q ss_pred HH
Q 030502 163 LR 164 (176)
Q Consensus 163 l~ 164 (176)
+.
T Consensus 152 ~~ 153 (470)
T PLN03015 152 LD 153 (470)
T ss_pred hh
Confidence 64
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.67 E-value=1.1e-16 Score=134.28 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=91.4
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCCCCCC--CC------CCCH
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPS--KV------ADDI 86 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~~p~~~~~~--~~------~~~~ 86 (176)
.||++++.|+.||++|++.|+++|++|||+|+|++++....... ..|++|..++ +..+...... .. ....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~-~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE-AAGLEFVPVG-GDPDELLASPERNAGLLLLGPGLL 78 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH-HcCCceeeCC-CCHHHHHhhhhhcccccccchHHH
Confidence 48999999999999999999999999999999999986554332 4688999888 4322110000 00 0011
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHH
Q 030502 87 PALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIA 152 (176)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 152 (176)
......+...+...++++++.+.+ .++||||+|.+..++..+|+++|||++.+++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~ 137 (401)
T cd03784 79 LGALRLLRREAEAMLDDLVAAARD-------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDT 137 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCC
Confidence 222333334444555565555432 58999999999899999999999999999887643
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.58 E-value=5.4e-15 Score=124.03 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=84.3
Q ss_pred ecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCCCCCC--CCCCCCCCCCHHHHHHHHHHhc
Q 030502 20 FPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSE--TYQPSKVADDIPALLLSLNAKC 97 (176)
Q Consensus 20 vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~ 97 (176)
+.+|+.||++|++.||++|++|||+||+++++.+.+.+. ..|++++.++ ..... ..+. ....+...++..+...+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~-~~G~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVE-AAGAEFVLYG-SALPPPDNPPE-NTEEEPIDIIEKLLDEA 77 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHH-HcCCEEEecC-CcCcccccccc-ccCcchHHHHHHHHHHH
Confidence 357899999999999999999999999999987765432 3688998888 43321 1000 00122333444444444
Q ss_pred chHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecc
Q 030502 98 VVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 98 ~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 149 (176)
...+.++.+.+.+ .++||||+|.++.|+..+|+++|||+|.+.+.
T Consensus 78 ~~~~~~l~~~~~~-------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 78 EDVLPQLEEAYKG-------DRPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHHHHhcC-------CCCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 4445444444432 47999999999899999999999999998654
No 24
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.33 E-value=2.4e-14 Score=103.37 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=77.9
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDD-GFSETYQPSKVADDIPALLLSLNA 95 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~ 95 (176)
|++++.+..||++|++.|+++|.+|||+|++.+.+...+.. ...|++|+.++.+ ..+.. ......+....+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v-~~~Gl~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 72 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERV-EAAGLEFVPIPGDSRLPRS-------LEPLANLRRLAR 72 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHH-HHTT-EEEESSSCGGGGHH-------HHHHHHHHCHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecc-cccCceEEEecCCcCcCcc-------cchhhhhhhHHH
Confidence 68889999999999999999999999999999988766543 3479999999822 11110 001111111100
Q ss_pred h--cchHHHHHHHHHhhcCC--CCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHH
Q 030502 96 K--CVVPFRDCLANKLMSNS--QESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIA 152 (176)
Q Consensus 96 ~--~~~~l~~~l~~l~~~~~--~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 152 (176)
. ....+.+.+++...+.- -......|+++.+.....+..+|+++|||++.....+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 73 LIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 0 01112222222221100 000135788888988888899999999999998776643
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.32 E-value=2e-12 Score=111.34 Aligned_cols=144 Identities=27% Similarity=0.355 Sum_probs=93.9
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCC-C--CCceEEEcCC-------CCCCCCCCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN-Y--PHFEFCSFSD-------DGFSETYQPSKVA 83 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~-~--~~i~~~~l~~-------~~~p~~~~~~~~~ 83 (176)
+.|++++++|++||++|+.++|++|+++||+||++++..+...... . ..+....... ++++.+.+.. .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDD--D 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHH--H
Confidence 6799999999999999999999999999999999999765432211 1 1111111110 1111110000 0
Q ss_pred CCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcC-CCeEEEecccHHHHHHHHhhHh
Q 030502 84 DDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFR-LPTIVLLTDSIAASLSYAAFPI 162 (176)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lg-iP~v~f~~~~a~~~~~~~~~p~ 162 (176)
.........+...|...+++....+....+ .++||+|+|.+..|...++.+.+ ++..++++.++...+++...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKS----EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhc----CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 011111344455666777776554433221 34999999999888888887775 9999999999998888876554
Q ss_pred H
Q 030502 163 L 163 (176)
Q Consensus 163 l 163 (176)
.
T Consensus 159 ~ 159 (496)
T KOG1192|consen 159 S 159 (496)
T ss_pred c
Confidence 4
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.18 E-value=2.1e-10 Score=99.75 Aligned_cols=132 Identities=18% Similarity=0.142 Sum_probs=80.3
Q ss_pred CCceEEEe-cCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC-CCCCCCCCceEEEcCCCCCCC---CCCCCCC--C--
Q 030502 13 NRRRVILF-PLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PNSCNYPHFEFCSFSDDGFSE---TYQPSKV--A-- 83 (176)
Q Consensus 13 ~~~~Il~v-p~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~-~~~~~~~~i~~~~l~~~~~p~---~~~~~~~--~-- 83 (176)
...+|+++ |.++.||++-+..++++|++|||+||++++.... ....+..+++.+.++ ..... .++.... .
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~ 97 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDAS-LSVEYFKKLVKSSAVFRKRG 97 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcC-CChHHHHHHHhhhhHHHhhh
Confidence 34578755 8899999999999999999999999999875321 101123566766654 11110 0000000 0
Q ss_pred --CCH----HHHHHHHHHhcchHHH--HHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhc-CCCeEEEeccc
Q 030502 84 --DDI----PALLLSLNAKCVVPFR--DCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDF-RLPTIVLLTDS 150 (176)
Q Consensus 84 --~~~----~~~~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~~~~ 150 (176)
.+. ...+..+...|...+. ++.+.++++ + .+||++|+|.+..|+..+|+++ |+|.|.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~----~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 98 VVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANK-N----NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcC-C----CceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 010 1112222334444442 223334311 1 5799999999999999999999 99988776644
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.96 E-value=6.7e-12 Score=108.41 Aligned_cols=125 Identities=17% Similarity=0.282 Sum_probs=61.3
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC-CCCCCCceEEEcCCCCCCCC-CCC-CCC-C-------
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN-SCNYPHFEFCSFSDDGFSET-YQP-SKV-A------- 83 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~-~~~~~~i~~~~l~~~~~p~~-~~~-~~~-~------- 83 (176)
+||+++|+ +.||+++|..++++|++|||+||++++...... .....++++..++ .+.+.. .+. ... .
T Consensus 1 ~kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (500)
T PF00201_consen 1 GKVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYP-DPYPEEEFEEIFPEFISKFFSES 78 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE------TT------TTHHHHHHHHH
T ss_pred CEEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEc-CCcchHHHhhhhHHHHHHHhhhc
Confidence 47888884 779999999999999999999999998542111 1123567777776 433321 110 000 0
Q ss_pred CC---HHHHHH-------HHHHhcchHH--HHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEec
Q 030502 84 DD---IPALLL-------SLNAKCVVPF--RDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 84 ~~---~~~~~~-------~~~~~~~~~l--~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 148 (176)
.. ....+. .....|...+ +++++.+++ .++|++|+|.+.+|+..+|+.+|+|.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-------~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 79 SFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-------EKFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp CCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-------HHHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------hccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 00 011111 1112232222 122333433 3799999999999999999999999987643
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.62 E-value=3.1e-08 Score=84.12 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=72.2
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCCCCCCCCC-CCHHHHHHH
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVA-DDIPALLLS 92 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~~p~~~~~~~~~-~~~~~~~~~ 92 (176)
+.||+++..|..||++|.+.|+++|..+||+|+|+++..+...+.. .++.|..++..+.+...+ ... .....+..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~~~~~~~~--~~~~~~~~~~~~- 76 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIRDSELATE--DGKFAGVKSFRR- 76 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeeccccCChhhhh--hhhhhccchhHH-
Confidence 4689999999999999999999999999999999999877654432 457787777211111110 000 01111111
Q ss_pred HHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 93 LNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 93 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
........+.+.++-+.+ ..+|+++.|.-...+ .+++..++|++..
T Consensus 77 ~~~~~~~~~~~~~~~~~e-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 122 (406)
T COG1819 77 LLQQFKKLIRELLELLRE-------LEPDLVVDDARLSLG-LAARLLGIPVVGI 122 (406)
T ss_pred HhhhhhhhhHHHHHHHHh-------cchhhhhcchhhhhh-hhhhhcccchhhh
Confidence 122222333444444433 357777766544333 5666666666654
No 29
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.59 E-value=5.7e-07 Score=73.79 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=67.5
Q ss_pred EEE-ecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCce-EEEcCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030502 17 VIL-FPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFE-FCSFSDDGFSETYQPSKVADDIPALLLSLN 94 (176)
Q Consensus 17 Il~-vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~-~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~ 94 (176)
|++ +...|.||+.|.+.++++|.+ ||+|.++++........ ..++. +...+ +...... ++..+....+....
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~-~~~~~~~~~~p--~~~~~~~--~~~~~~~~~l~~~~ 75 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYIS-KYGFKVFETFP--GIKLKGE--DGKVNIVKTLRNKE 75 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhh-hhcCcceeccC--CceEeec--CCcCcHHHHHHhhc
Confidence 454 446777999999999999999 99999998765222111 12333 33322 1110000 00112222211110
Q ss_pred HhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecc
Q 030502 95 AKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 95 ~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 149 (176)
......+.+..+-+++ .+||+||+| +.+.+...|+.+|||.+.+.-+
T Consensus 76 ~~~~~~~~~~~~~l~~-------~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 76 YSPKKAIRREINIIRE-------YNPDLIISD-FEYSTVVAAKLLKIPVICISNQ 122 (321)
T ss_pred cccHHHHHHHHHHHHh-------cCCCEEEEC-CchHHHHHHHhcCCCEEEEecc
Confidence 1101234444444433 489999999 5555678999999999976543
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.53 E-value=1.1e-06 Score=71.42 Aligned_cols=122 Identities=17% Similarity=0.107 Sum_probs=71.3
Q ss_pred ceEEEecC-CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHH
Q 030502 15 RRVILFPL-PFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (176)
Q Consensus 15 ~~Il~vp~-p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 93 (176)
+||++... -|.||..-.+.|+++| |||+|++++......... +.++...++.-+.... ....+........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLK--PRFPVREIPGLGPIQE----NGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhc--cccCEEEccCceEecc----CCccchHHHHHHH
Confidence 36665553 4779999999999999 699999999875432221 2244544441111111 0111111111111
Q ss_pred ---HHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHH
Q 030502 94 ---NAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIA 152 (176)
Q Consensus 94 ---~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 152 (176)
.......++++++.+.+ .+||+||+|. .+.+...|+..|+|++.+......
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~-------~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLRE-------FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHh-------cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 11222344444544543 4899999995 444667889999999987555433
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.40 E-value=7.6e-06 Score=68.26 Aligned_cols=120 Identities=12% Similarity=0.095 Sum_probs=72.6
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC-CCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHH
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN-SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~-~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 93 (176)
.+|++....-.||+.|.+.++++|.++||+|.|+++....+. .....++++..++..++. + ...+. .+...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~-~------~~~~~-~~~~~ 73 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLR-R------YFDLK-NIKDP 73 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcC-C------CchHH-HHHHH
Confidence 467777777779999999999999999999999997653321 112236777777621221 1 11121 11111
Q ss_pred HHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcch--hHHHHHhhcCCCeEEEeccc
Q 030502 94 NAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWF--IAHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 94 ~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~ 150 (176)
.... ..+-+.++-+++ .+||+||....+. .+...|..+|+|.+..-...
T Consensus 74 ~~~~-~~~~~~~~i~~~-------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~ 124 (352)
T PRK12446 74 FLVM-KGVMDAYVRIRK-------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM 124 (352)
T ss_pred HHHH-HHHHHHHHHHHh-------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC
Confidence 1111 112222222322 4899999976444 34677888999999865443
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00012 Score=61.35 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=70.0
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCC-EEEEEeCCCCCCC-CCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHH
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGF-SITIIHTTLNSPN-SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh-~VT~i~~~~~~~~-~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 93 (176)
+|++......||+.|.+.|+++|.++|+ +|.++.+....+. .....+++++.++ .+....... .......+..+
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~-~~~~~~~~~---~~~~~~~~~~~ 77 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIP-SGGLRRKGS---LKLLKAPFKLL 77 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEe-cccccccCc---HHHHHHHHHHH
Confidence 4667777778999999999999999999 5777766543322 2223478888887 332222100 01111111111
Q ss_pred HHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcch--hHHHHHhhcCCCeEEEecc
Q 030502 94 NAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWF--IAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 94 ~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~ 149 (176)
. .....++++++ .+||+||.=..++ .+...|..+|||.+.--..
T Consensus 78 -~-~~~~a~~il~~----------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn 123 (357)
T COG0707 78 -K-GVLQARKILKK----------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN 123 (357)
T ss_pred -H-HHHHHHHHHHH----------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecC
Confidence 0 11122344444 3899999955443 4466678899999985443
No 33
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.72 E-value=0.0013 Score=53.79 Aligned_cols=115 Identities=16% Similarity=0.052 Sum_probs=66.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC-CCCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP-NSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLN 94 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~-~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~ 94 (176)
||+++.....||+.....|+++|.++||+|++++.+.... ......+++++.++ -..... .+....+....
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~-~~~~~~-------~~~~~~l~~~~ 73 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIP-VGGLRR-------KGSFRLIKTPL 73 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEe-ccCcCC-------CChHHHHHHHH
Confidence 7888887778999988899999999999999998643211 11112466666665 111100 11211111111
Q ss_pred HhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcch--hHHHHHhhcCCCeEEE
Q 030502 95 AKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWF--IAHSVANDFRLPTIVL 146 (176)
Q Consensus 95 ~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f 146 (176)
.. ...+.++.+-+++ .+||+|++..... ++...+...|+|.+.+
T Consensus 74 ~~-~~~~~~l~~~i~~-------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 74 KL-LKAVFQARRILKK-------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HH-HHHHHHHHHHHHh-------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 10 1122222222332 4899999975332 3345677789999753
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.64 E-value=0.0017 Score=53.13 Aligned_cols=115 Identities=12% Similarity=-0.005 Sum_probs=66.0
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC-CCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN-SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLN 94 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~-~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~ 94 (176)
+|++......||......|++.|.++||+|++++....... .....++++..++ .....+ ......+....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~ 72 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIP-VGGLRR-------KGSLKKLKAPF 72 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEE-ecCcCC-------CChHHHHHHHH
Confidence 46777777779999999999999999999999987542211 1112357776666 111101 11111111111
Q ss_pred HhcchHHHHHHHHHhhcCCCCCCCCccEEEecCc--chhHHHHHhhcCCCeEEE
Q 030502 95 AKCVVPFRDCLANKLMSNSQESKDSFACLITDAA--WFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 95 ~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~--~~~~~~vA~~lgiP~v~f 146 (176)
.. ...+..+.+.+++ .+||+|++..- ..++...|...|+|.+..
T Consensus 73 ~~-~~~~~~~~~~i~~-------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 73 KL-LKGVLQARKILKK-------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HH-HHHHHHHHHHHHh-------cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 00 1112222222322 47999998652 233456678889999864
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.57 E-value=0.0032 Score=51.98 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=68.0
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC-CCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHH
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN-SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~-~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 93 (176)
.+|+++.-...||...++.|++.|.++||+|++++....... .....+++++.++..+.. + .+....+...
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~-~-------~~~~~~l~~~ 73 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLR-R-------KGSLANLKAP 73 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcC-C-------CChHHHHHHH
Confidence 578888876779999999999999999999999988542111 111246677666511111 1 1111111111
Q ss_pred HHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcc-hh-HHHHHhhcCCCeEEE
Q 030502 94 NAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAW-FI-AHSVANDFRLPTIVL 146 (176)
Q Consensus 94 ~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f 146 (176)
.. ....+..+.+-+++ .+||+|++.... .+ +...+...|+|.+..
T Consensus 74 ~~-~~~~~~~~~~~ik~-------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 74 FK-LLKGVLQARKILKR-------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HH-HHHHHHHHHHHHHh-------cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 00 01122233333332 489999998632 33 345567788999865
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=97.52 E-value=0.00046 Score=58.20 Aligned_cols=110 Identities=14% Similarity=0.014 Sum_probs=63.7
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC-CCCCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHH
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~-~~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 93 (176)
++|++....-.||+.|. .|+++|.++|++++|+...... +...-...+++..++ ..++.+.+..+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~-------------v~G~~~~l~~~ 71 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELS-------------VMGLREVLGRL 71 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhh-------------hccHHHHHHHH
Confidence 57888887777999999 9999999999999999876321 000000112222222 11121111111
Q ss_pred HHhcchHHHHHHHHHhhcCCCCCCCCccEEEe-cCcchhH--HHHHhhcCCCeEEE
Q 030502 94 NAKCVVPFRDCLANKLMSNSQESKDSFACLIT-DAAWFIA--HSVANDFRLPTIVL 146 (176)
Q Consensus 94 ~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~-D~~~~~~--~~vA~~lgiP~v~f 146 (176)
......+.+..+.+++ .+||+||. |.-.+.. ...|+.+|+|.+..
T Consensus 72 -~~~~~~~~~~~~~l~~-------~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 72 -GRLLKIRKEVVQLAKQ-------AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred -HHHHHHHHHHHHHHHh-------cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 1112233344444443 48999998 7533222 33678899999987
No 37
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.27 E-value=0.0099 Score=49.84 Aligned_cols=115 Identities=11% Similarity=0.133 Sum_probs=63.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNA 95 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~ 95 (176)
||+++---.+| ++.+||+.|+++||+|++++........ .+++.+.+. ...... .........+.....
T Consensus 1 ~il~~~~~~p~---~~~~la~~L~~~G~~v~~~~~~~~~~~~---~~v~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 69 (396)
T cd03818 1 RILFVHQNFPG---QFRHLAPALAAQGHEVVFLTEPNAAPPP---GGVRVVRYR-PPRGPT----SGTHPYLREFEEAVL 69 (396)
T ss_pred CEEEECCCCch---hHHHHHHHHHHCCCEEEEEecCCCCCCC---CCeeEEEec-CCCCCC----CCCCccchhHHHHHH
Confidence 46666533333 3678999999999999999987643211 168887776 221111 000111111111111
Q ss_pred hcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhc-CCCeEEEe
Q 030502 96 KCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDF-RLPTIVLL 147 (176)
Q Consensus 96 ~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~ 147 (176)
.....++. +..+...+ .+||+|++-..+.++..+.+.+ ++|.+.+.
T Consensus 70 ~~~~~~~~-~~~~~~~~-----~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 70 RGQAVARA-LLALRAKG-----FRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHHH-HHHHHhcC-----CCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 11122222 22332221 4799999987776667777775 48888754
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.70 E-value=0.011 Score=49.22 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=30.8
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.+|+++...-.||+.|.. ++++|.++++++.++...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVG 37 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEc
Confidence 478888877789999999 999999988888887654
No 39
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.61 E-value=0.027 Score=45.30 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
.|+-+.+..|+++|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 69999999999999999999999998653
No 40
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.60 E-value=0.063 Score=45.58 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=41.6
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCC--CCCCCceEEEcC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNS--CNYPHFEFCSFS 69 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~--~~~~~i~~~~l~ 69 (176)
++.+|+++.....|+-.=+..+|+.|+++||+|++++........ ....+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~ 60 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLP 60 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECC
Confidence 456777777777777777788999999999999999875422111 123578888876
No 41
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.51 E-value=0.05 Score=38.46 Aligned_cols=103 Identities=8% Similarity=0.039 Sum_probs=60.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNA 95 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~ 95 (176)
+|+++.--...| ..++++.|.++||+|++++............++++..++ ... .....++. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~-~~~----------k~~~~~~~-~-- 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLP-SPR----------KSPLNYIK-Y-- 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEec-CCC----------CccHHHHH-H--
Confidence 466666444444 568899999999999999995443222223678888776 111 01111221 1
Q ss_pred hcchHHHHHHHHHhhcCCCCCCCCccEEEecCcch-hH--HHHHhhcC-CCeEEEec
Q 030502 96 KCVVPFRDCLANKLMSNSQESKDSFACLITDAAWF-IA--HSVANDFR-LPTIVLLT 148 (176)
Q Consensus 96 ~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~-~~--~~vA~~lg-iP~v~f~~ 148 (176)
. .+..++++ .+||+|.+-...+ +. ...+...| +|++....
T Consensus 64 --~-~l~k~ik~----------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 64 --F-RLRKIIKK----------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --H-HHHHHhcc----------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1 23344433 4799998866554 22 34456778 88876433
No 42
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.42 E-value=0.082 Score=42.48 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=26.1
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
.|+-.-...+++.|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 58999999999999999999999987643
No 43
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.36 E-value=0.051 Score=45.35 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=46.6
Q ss_pred CceEEEec--CCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCceEEEcCC
Q 030502 14 RRRVILFP--LPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFEFCSFSD 70 (176)
Q Consensus 14 ~~~Il~vp--~p~~GH~~P~l~La~~La~r--Gh~VT~i~~~~~~~~~~~~~~i~~~~l~~ 70 (176)
+.+|+|.. ..|-||.-=++.+|..|++. |.+|++++............+++++.+|+
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCc
Confidence 45899988 57779999999999999997 99999999875554333336899999993
No 44
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.27 E-value=0.096 Score=44.08 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 030502 31 MLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~ 51 (176)
..+|++.|.++||+|+++++.
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~ 41 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAP 41 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecC
Confidence 579999999999999999975
No 45
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.19 E-value=0.24 Score=39.55 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
.|+-.-...++++|+++||+|+++++...
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 43 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGED 43 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 58888899999999999999999998654
No 46
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.13 E-value=0.068 Score=43.72 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=36.2
Q ss_pred eEEEecCC-CCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcC
Q 030502 16 RVILFPLP-FQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (176)
Q Consensus 16 ~Il~vp~p-~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~ 69 (176)
+|+++..| ..|.-.-..++++.|+++||+|++++...........+++.+..++
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~ 56 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVE 56 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhhccCeEEEEec
Confidence 56666554 4488888999999999999999999876432111122455555433
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.04 E-value=0.093 Score=43.21 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=58.3
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC---CCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcchHH
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLNSPN---SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVPF 101 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~---~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (176)
.|+-..+.+|++.|+++||+|++++....... .....++++..++ ....... . .......+.. ..
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-~~~~~~~~~~-------~~ 88 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVP-AGPAEYL---P-KEELWPYLDE-------FA 88 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecc-cccccCC---C-hhhcchhHHH-------HH
Confidence 47888999999999999999999987543221 1123466766655 1111000 0 0001111111 11
Q ss_pred HHHHHHHhhcCCCCCCCCccEEEecCcc--hhHHHHHhhcCCCeEEE
Q 030502 102 RDCLANKLMSNSQESKDSFACLITDAAW--FIAHSVANDFRLPTIVL 146 (176)
Q Consensus 102 ~~~l~~l~~~~~~~~~~~~d~vI~D~~~--~~~~~vA~~lgiP~v~f 146 (176)
..+.+.+.... .++|+|++.... ..+..+++.+|+|++..
T Consensus 89 ~~~~~~~~~~~-----~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 89 DDLLRFLRREG-----GRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHHHHHHHhcC-----CCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 22222232210 279999987533 23467788899998864
No 48
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=95.84 E-value=0.21 Score=39.56 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=39.4
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~ 69 (176)
+|+++.....|+..-+.++++.|.++||+|++++............+++++.++
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 54 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIP 54 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecc
Confidence 466666556788999999999999999999999987544311123466666655
No 49
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.80 E-value=0.025 Score=40.08 Aligned_cols=97 Identities=10% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCCCC-CCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcchHHHHHHHHH
Q 030502 30 PMLQLGSILYSEGFSITIIHTTLNSPNS-CNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVPFRDCLANK 108 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~~~~~~~~-~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 108 (176)
-+.+|++.|+++||+|++++........ ....++++..++ .+... ........+ ..+.+++ ..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~--------~~~~~~l-~~ 69 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLP---LPRRP----WPLRLLRFL--------RRLRRLL-AA 69 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE-----S-SS----SGGGHCCHH--------HHHHHHC-HH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEecc---CCccc----hhhhhHHHH--------HHHHHHH-hh
Confidence 3678999999999999999976433211 123567777766 11110 000000011 1223333 11
Q ss_pred hhcCCCCCCCCccEEEecCcch-hHHHHHh-hcCCCeEEEecc
Q 030502 109 LMSNSQESKDSFACLITDAAWF-IAHSVAN-DFRLPTIVLLTD 149 (176)
Q Consensus 109 ~~~~~~~~~~~~d~vI~D~~~~-~~~~vA~-~lgiP~v~f~~~ 149 (176)
.+ .++|+|.+-.... +...+++ ..|+|++.-.-.
T Consensus 70 ~~-------~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 70 RR-------ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp CT----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred hc-------cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 11 5899999876432 3345555 889999886543
No 50
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.78 E-value=0.061 Score=43.39 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=35.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC--CCCCceEEEcC
Q 030502 23 PFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC--NYPHFEFCSFS 69 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~--~~~~i~~~~l~ 69 (176)
-|.||+.=.+.||++|.++|++|+|++........+ ...++.+..++
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~ 60 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELP 60 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEec
Confidence 467999999999999999999999999875332111 13466666666
No 51
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=95.71 E-value=0.22 Score=42.88 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=30.1
Q ss_pred CCceEEEecCCC-----CCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 13 NRRRVILFPLPF-----QGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 13 ~~~~Il~vp~p~-----~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
++.||+++.-+. .|=-+=+.+|++.|.++||+|++++...
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 366899884221 2434677899999999999999999864
No 52
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.44 E-value=0.53 Score=35.43 Aligned_cols=93 Identities=10% Similarity=0.096 Sum_probs=54.9
Q ss_pred hCCCEEEEEeCCCCCCCCCCCCCceEEEcCC-CCCCCCCCCCCCCCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCC
Q 030502 40 SEGFSITIIHTTLNSPNSCNYPHFEFCSFSD-DGFSETYQPSKVADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKD 118 (176)
Q Consensus 40 ~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 118 (176)
++||+|++++....... .++++.+.+.. .+...+ ..-...-++....+.. ...+.+.+|++++ -
T Consensus 1 q~gh~v~fl~~~~~~~~---~~GV~~~~y~~~~~~~~~------~~~~~~~~e~~~~rg~-av~~a~~~L~~~G-----f 65 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI---PPGVRVVRYRPPRGPTPG------THPYVRDFEAAVLRGQ-AVARAARQLRAQG-----F 65 (171)
T ss_pred CCCCEEEEEecCCCCCC---CCCcEEEEeCCCCCCCCC------CCcccccHHHHHHHHH-HHHHHHHHHHHcC-----C
Confidence 47999999995544321 15888888872 111111 0101111122212222 2333445555543 5
Q ss_pred CccEEEecCcchhHHHHHhhc-CCCeEEEe
Q 030502 119 SFACLITDAAWFIAHSVANDF-RLPTIVLL 147 (176)
Q Consensus 119 ~~d~vI~D~~~~~~~~vA~~l-giP~v~f~ 147 (176)
.||+||.-..+..+.-+-+.+ ++|.+.+.
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 799999998888888888999 89999863
No 53
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=95.31 E-value=0.1 Score=43.48 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCCC-CCCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcchHHHH
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLNSP-NSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVPFRD 103 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~~~-~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (176)
.-|+.-+..+.++|.++||+|.+.+-+.... ...+.-++++..+...+ .+....+.....+ ..+
T Consensus 10 p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-----------~~~~~Kl~~~~~R----~~~ 74 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-----------DSLYGKLLESIER----QYK 74 (335)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-----------CCHHHHHHHHHHH----HHH
Confidence 3499999999999999999999887764221 11123577887776212 1111111111111 122
Q ss_pred HHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHHH
Q 030502 104 CLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIAA 153 (176)
Q Consensus 104 ~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~ 153 (176)
+++-..+ .+||++|+ ...+.+..+|.-+|+|.+.|.=+.-+.
T Consensus 75 l~~~~~~-------~~pDv~is-~~s~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 75 LLKLIKK-------FKPDVAIS-FGSPEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred HHHHHHh-------hCCCEEEe-cCcHHHHHHHHHhCCCeEEEecCchhh
Confidence 2232322 37999997 333556779999999999997765443
No 54
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=95.23 E-value=0.76 Score=42.53 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=66.6
Q ss_pred CceEEEecCCC-------------CCChHHHHHHHHH--------HHhCCC----EEEEEeCCCCC--C--------CCC
Q 030502 14 RRRVILFPLPF-------------QGHINPMLQLGSI--------LYSEGF----SITIIHTTLNS--P--------NSC 58 (176)
Q Consensus 14 ~~~Il~vp~p~-------------~GH~~P~l~La~~--------La~rGh----~VT~i~~~~~~--~--------~~~ 58 (176)
..+|+++..-+ .|+..=.+++|++ |+.+|| +|+++|-.... . ...
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc
Confidence 45788876544 4777777778886 578999 77788864321 1 111
Q ss_pred CCCCceEEEcCCCCCCCCCCCCCC---CCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcch-h-HH
Q 030502 59 NYPHFEFCSFSDDGFSETYQPSKV---ADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWF-I-AH 133 (176)
Q Consensus 59 ~~~~i~~~~l~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~-~-~~ 133 (176)
..++.+++.++ .+...... ... ..++..++..+. +++.+.+....+ .+||+|++-+... + +.
T Consensus 335 ~~~~~~I~rvp-~g~~~~~~-~~~~i~k~~l~p~l~~f~-------~~~~~~~~~~~~----~~pDlIHahy~d~glva~ 401 (784)
T TIGR02470 335 GTEHAWILRVP-FRTENGII-LRNWISRFEIWPYLETFA-------EDAEKEILAELQ----GKPDLIIGNYSDGNLVAS 401 (784)
T ss_pred CCCceEEEEec-CCCCcccc-cccccCHHHHHHHHHHHH-------HHHHHHHHHhcC----CCCCEEEECCCchHHHHH
Confidence 23577888877 33322100 000 111222333332 222222221111 4799999976443 3 47
Q ss_pred HHHhhcCCCeEEE
Q 030502 134 SVANDFRLPTIVL 146 (176)
Q Consensus 134 ~vA~~lgiP~v~f 146 (176)
.+++++|||.+..
T Consensus 402 lla~~lgVP~v~t 414 (784)
T TIGR02470 402 LLARKLGVTQCTI 414 (784)
T ss_pred HHHHhcCCCEEEE
Confidence 8899999997654
No 55
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=95.01 E-value=0.69 Score=33.09 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
.|=-.-+.+|+++|+++||+|++++.....
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 366678899999999999999999887544
No 56
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=94.90 E-value=0.67 Score=38.64 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC---CCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcchH
Q 030502 24 FQGHINPMLQLGSILYSEGFSITIIHTTLNSPN---SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVP 100 (176)
Q Consensus 24 ~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~---~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (176)
..|--.-..+|+++|+++||+|+++++...... .....++++..++ ...-.+ .....+...+.......
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~ 90 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVV-AGPYEG-------LDKEDLPTQLCAFTGGV 90 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEec-CCCccc-------CCHHHHHHHHHHHHHHH
Confidence 457778899999999999999999997543211 1112467777665 111000 00111111110000112
Q ss_pred HHHHHHHHhhcCCCCCCCCccEEEecCcc-h-hHHHHHhhcCCCeEEEec
Q 030502 101 FRDCLANKLMSNSQESKDSFACLITDAAW-F-IAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~d~vI~D~~~-~-~~~~vA~~lgiP~v~f~~ 148 (176)
++..++.. . .++|+|-+-... . ++..+++.+|+|++.-+-
T Consensus 91 ~~~~~~~~---~-----~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 91 LRAEARHE---P-----GYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred HHHHhhcc---C-----CCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 22222221 1 379999775432 2 345667789999887544
No 57
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=94.90 E-value=0.51 Score=44.87 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHhCC--CEEEEEeCCCCCCCC-----------------------CCCCCceEEEcCCCCCCCCCCCC
Q 030502 26 GHINPMLQLGSILYSEG--FSITIIHTTLNSPNS-----------------------CNYPHFEFCSFSDDGFSETYQPS 80 (176)
Q Consensus 26 GH~~P~l~La~~La~rG--h~VT~i~~~~~~~~~-----------------------~~~~~i~~~~l~~~~~p~~~~~~ 80 (176)
|+..=..+||++|+++| |+|.++|-....+.. ...++++++.++ .+....+-
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip-~GP~~~~l-- 272 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIP-FGPRDKYI-- 272 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEec-cCCCCCCc--
Confidence 56677799999999998 899999974321110 012477777777 44332210
Q ss_pred CCCCCHHHHHHHHHHhcchHHHHH----HHHHhhcCCCCCCCCccEEEecCcc-hh-HHHHHhhcCCCeEEEec
Q 030502 81 KVADDIPALLLSLNAKCVVPFRDC----LANKLMSNSQESKDSFACLITDAAW-FI-AHSVANDFRLPTIVLLT 148 (176)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~----l~~l~~~~~~~~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f~~ 148 (176)
....+..++..+.+.+...+.+. .+++....+ ..||+|-+-+.. .+ +..+++.+|||.|.-.-
T Consensus 273 -~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~----~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~H 341 (1050)
T TIGR02468 273 -PKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHP----VWPYVIHGHYADAGDSAALLSGALNVPMVLTGH 341 (1050)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccC----CCCCEEEECcchHHHHHHHHHHhhCCCEEEECc
Confidence 01123344444444333333221 122211000 259999997544 33 36888999999776533
No 58
>PLN00142 sucrose synthase
Probab=94.87 E-value=0.37 Score=44.67 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=24.4
Q ss_pred CCccEEEecCcch-hH-HHHHhhcCCCeEEEec
Q 030502 118 DSFACLITDAAWF-IA-HSVANDFRLPTIVLLT 148 (176)
Q Consensus 118 ~~~d~vI~D~~~~-~~-~~vA~~lgiP~v~f~~ 148 (176)
.+||+|++-+... ++ ..+++++|||.+...-
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 4799999986554 44 7899999999997543
No 59
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.51 E-value=0.65 Score=37.12 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=28.1
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 21 PLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 21 p~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
+....|+-.-...+++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 334569999999999999999999999987643
No 60
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.34 E-value=1.2 Score=36.04 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC-CCCCCCceEEEcC
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLNSPN-SCNYPHFEFCSFS 69 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~-~~~~~~i~~~~l~ 69 (176)
.|=-.-..+|+++|.++||+|++++....... .....+++++.++
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~ 60 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIP 60 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcC
Confidence 35457778999999999999999998643321 1223577877776
No 61
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=94.06 E-value=1.6 Score=36.02 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=26.5
Q ss_pred eEEEecC-CC-CCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPL-PF-QGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~-p~-~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+|+++.. .. .|=-.-+..|++.|+++||+|++++..
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 5665542 22 244456689999999999999999975
No 62
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=94.05 E-value=0.53 Score=38.04 Aligned_cols=100 Identities=10% Similarity=-0.030 Sum_probs=56.3
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcchHHHHH
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVPFRDC 104 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (176)
.|--.-..+|++.|+++||+|++++............+++++.++. ... +....+.. +..+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~--------~~~l 70 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPF---ISK--------NPLRILLN--------VARL 70 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEccc---ccc--------chhhhHHH--------HHHH
Confidence 4666788999999999999999998753221111123566655541 100 01111111 1112
Q ss_pred HHHHhhcCCCCCCCCccEEEecCcc-hhH-HHHHhhcCCCeEEEeccc
Q 030502 105 LANKLMSNSQESKDSFACLITDAAW-FIA-HSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 105 l~~l~~~~~~~~~~~~d~vI~D~~~-~~~-~~vA~~lgiP~v~f~~~~ 150 (176)
.+.+.+ .++|+|+..... .|. ...++..|+|.+..+-..
T Consensus 71 ~~~~~~-------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 111 (355)
T cd03819 71 RRLIRE-------EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGF 111 (355)
T ss_pred HHHHHH-------cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCc
Confidence 222322 479999987533 344 445677899998755433
No 63
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.88 E-value=1.1 Score=37.65 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCCCCC--CCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcchHHHH
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTTLNSPN--SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVPFRD 103 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~~~~~~--~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (176)
|--.-..+|++.|+++||+|++++....... .....+++++.++....... .......... ..+++
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~-------~~~~~~~~~~-----~~l~~ 82 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQ-------STLPTFFGTF-----PLLRN 82 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCC-------ccccchhhhH-----HHHHH
Confidence 5567889999999999999999997532211 01124666666651111100 0000010100 12233
Q ss_pred HHHHHhhcCCCCCCCCccEEEecCcc-hh---HHHHHhhcCCCeEEE
Q 030502 104 CLANKLMSNSQESKDSFACLITDAAW-FI---AHSVANDFRLPTIVL 146 (176)
Q Consensus 104 ~l~~l~~~~~~~~~~~~d~vI~D~~~-~~---~~~vA~~lgiP~v~f 146 (176)
.+++ .++|+|-+-... .+ +...++.+|+|.+..
T Consensus 83 ~~~~----------~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 83 ILIR----------ERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HHHh----------cCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 3322 379999875422 22 356678899998864
No 64
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=93.06 E-value=1.2 Score=38.06 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHhCCC--EEEEEeCCCCC-----C---CC-CCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030502 26 GHINPMLQLGSILYSEGF--SITIIHTTLNS-----P---NS-CNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLN 94 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh--~VT~i~~~~~~-----~---~~-~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~ 94 (176)
|=-.-+.+|+++|+.+|| +|+++|..... . .. ....+++++.++ .+.. ... .......++..+
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~-~~~~-~~~---~~~~~~~~~~~~- 100 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLP-FGPR-RYL---RKELLWPYLDEL- 100 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEec-CCCC-CCc---ChhhhhhhHHHH-
Confidence 555678899999999997 99999963211 0 00 112567777766 2111 100 000111111111
Q ss_pred HhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcc-h-hHHHHHhhcCCCeEEEe
Q 030502 95 AKCVVPFRDCLANKLMSNSQESKDSFACLITDAAW-F-IAHSVANDFRLPTIVLL 147 (176)
Q Consensus 95 ~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~-~-~~~~vA~~lgiP~v~f~ 147 (176)
...+...+++. . .+||+|-+-... . .+..+++.+|+|+|.-.
T Consensus 101 ---~~~l~~~~~~~---~-----~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 101 ---ADNLLQHLRQQ---G-----HLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred ---HHHHHHHHHHc---C-----CCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 11222233221 1 369999996532 2 23566788999997753
No 65
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=92.83 E-value=2.6 Score=33.09 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=25.7
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 24 FQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 24 ~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
..|...-+..+++.|+++||+|++++....
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 457778889999999999999999998654
No 66
>PLN02275 transferase, transferring glycosyl groups
Probab=92.75 E-value=5.1 Score=33.36 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=38.6
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCC-EEEEEeCCCCCCCC--CCCCCceEEEcC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGF-SITIIHTTLNSPNS--CNYPHFEFCSFS 69 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh-~VT~i~~~~~~~~~--~~~~~i~~~~l~ 69 (176)
+.++.++..+-.|.---+..+++.|+++|| +|++++........ ....+++++.++
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~ 62 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMV 62 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECC
Confidence 344444555677888889999999999986 79999865432211 123568888877
No 67
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.60 E-value=1.9 Score=35.48 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=36.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
...|.+..+||.|--.-.-.|+++|.++||+|.++..+..++
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 345778889999999999999999999999999999875544
No 68
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=92.27 E-value=3.5 Score=32.85 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
|--.-...|++.|.++||+|++++....
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 5567789999999999999999997643
No 69
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=91.78 E-value=3 Score=32.78 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
.|+..-+..+++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 689999999999999999999999987543
No 70
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=91.12 E-value=0.33 Score=40.41 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=31.7
Q ss_pred CCceEEEecCCCC-CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 13 NRRRVILFPLPFQ-GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 13 ~~~~Il~vp~p~~-GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++.+|++++.... ||..+...|+++|.++||+|.++...
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 3568888885544 99999999999999999987666543
No 71
>PRK00654 glgA glycogen synthase; Provisional
Probab=90.71 E-value=3.9 Score=35.24 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|.=.-.-.|+++|+++||+|+++++.
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 55567789999999999999999975
No 72
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=88.81 E-value=6 Score=31.82 Aligned_cols=38 Identities=8% Similarity=0.009 Sum_probs=29.9
Q ss_pred eEEEecC--CCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 16 RVILFPL--PFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 16 ~Il~vp~--p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
||+++.. ...|.-.-..++++.|.++||+|++++....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 3444442 4568889999999999999999999997643
No 73
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.25 E-value=1.4 Score=31.80 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=37.1
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
++.+|++...++-+|-.=..-++..|.++|++|+++...-.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp 42 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTS 42 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 57789999999999999999999999999999999988643
No 74
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=87.99 E-value=8.3 Score=30.77 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=28.7
Q ss_pred eEEEecC--C-CCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPL--P-FQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~--p-~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+|+++.. | ..|--.-...|+++|+++||+|+++....
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 4555542 2 34777889999999999999999998754
No 75
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=87.51 E-value=6.2 Score=32.22 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=25.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r-Gh~VT~i~~~~ 52 (176)
+|+++. ..+..+.=+..|.++|.++ |+++.++.+..
T Consensus 1 ~i~~~~-gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~ 37 (363)
T cd03786 1 KILVVT-GTRPEYIKLAPLIRALKKDPGFELVLVVTGQ 37 (363)
T ss_pred CEEEEE-ecCHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 355554 4556666677788889987 99999877754
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=86.64 E-value=0.88 Score=36.68 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=28.6
Q ss_pred EEEecC--CCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 17 VILFPL--PFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 17 Il~vp~--p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
|+++.. ...|+-....+|++.|.++||+|++++...
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 454433 236889999999999999999999998643
No 77
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=86.07 E-value=1.6 Score=30.27 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=32.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+|++.+.++-.|.....-++..|.++|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 478888899999999999999999999999887654
No 78
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=85.88 E-value=1.5 Score=34.86 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=26.7
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 24 FQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 24 ~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
..|+..-...+++.|+++||+|++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 459999999999999999999999988653
No 79
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=85.72 E-value=14 Score=29.16 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=27.4
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 24 FQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 24 ~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4789999999999999999999999986543
No 80
>PLN02846 digalactosyldiacylglycerol synthase
Probab=84.40 E-value=1.7 Score=37.83 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCceEEEecC---CCC-CChHHHHHHHHHHHhCC-CEEEEEeCCC
Q 030502 13 NRRRVILFPL---PFQ-GHINPMLQLGSILYSEG-FSITIIHTTL 52 (176)
Q Consensus 13 ~~~~Il~vp~---p~~-GH~~P~l~La~~La~rG-h~VT~i~~~~ 52 (176)
++.||++++- |-. |=..-.+.++..|+++| |+|+++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 4689999983 444 66577777888999999 8999998853
No 81
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=83.23 E-value=2.1 Score=34.54 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=31.1
Q ss_pred eEEEecC-CC-CCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 16 RVILFPL-PF-QGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 16 ~Il~vp~-p~-~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
||+++.. ++ .|+-.-...++++|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 6676653 33 68899999999999999999999997643
No 82
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=82.77 E-value=2.8 Score=32.85 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=30.4
Q ss_pred eEEEec--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 16 RVILFP--LPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 16 ~Il~vp--~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
||+++. ++..|+-.-+..+++.|.++||+|++++....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 345444 33678899999999999999999999998653
No 83
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.18 E-value=11 Score=31.25 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=65.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC-CCCCCCCCceEEEcCCCCCCCCCCCCCCCCCHH-HHHHHHHHhcchH
Q 030502 23 PFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PNSCNYPHFEFCSFSDDGFSETYQPSKVADDIP-ALLLSLNAKCVVP 100 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~-~~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~ 100 (176)
.-.-|+.-+-++.++|..+||+|-+.+-+... ......-||.+.++..++ ...+. .+.....+ ...
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g----------~~tl~~Kl~~~~eR--~~~ 75 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHG----------GVTLKEKLLESAER--VYK 75 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccC----------CccHHHHHHHHHHH--HHH
Confidence 34468888999999999999998777655322 111122356666655111 11122 22222211 112
Q ss_pred HHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHH
Q 030502 101 FRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIA 152 (176)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 152 (176)
|.++..+ -+||+.|. ...+.+.-+|--+|+|.++|.-+.-+
T Consensus 76 L~ki~~~----------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 76 LSKIIAE----------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHHhh----------cCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 3344333 37999999 67778889999999999999766543
No 84
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=81.65 E-value=22 Score=29.32 Aligned_cols=108 Identities=9% Similarity=0.140 Sum_probs=68.0
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCce-EEEcCCCCCCCCCCCCCCCCCHHHH
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFE-FCSFSDDGFSETYQPSKVADDIPAL 89 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~r--Gh~VT~i~~~~~~~~~~~~~~i~-~~~l~~~~~p~~~~~~~~~~~~~~~ 89 (176)
...+|+++-.-..|.+.=...+.+.|.++ +.+|++++...+.+.....|.|+ ++.++ .. . .....-
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~-~~--~--------~~~~~~ 72 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIK-NK--K--------AGASEK 72 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEec-cc--c--------ccHHHH
Confidence 46789999999999999999999999997 89999999887665444456665 33343 10 0 000000
Q ss_pred HHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 90 LLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
+. .+.++++++.. .++|++|.=........++...|.+..+-
T Consensus 73 ~~--------~~~~l~~~lr~-------~~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 73 IK--------NFFSLIKVLRA-------NKYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred HH--------HHHHHHHHHhh-------CCCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 00 12233455544 48999996433223355666667776543
No 85
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=81.49 E-value=16 Score=31.08 Aligned_cols=31 Identities=6% Similarity=-0.095 Sum_probs=22.8
Q ss_pred CCccEEEecCcchhHHHHHhh-cCCCeEEEec
Q 030502 118 DSFACLITDAAWFIAHSVAND-FRLPTIVLLT 148 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~-lgiP~v~f~~ 148 (176)
.+||++|.++.++.+..+++. .++|.+.+.-
T Consensus 106 ~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h 137 (419)
T cd03806 106 LVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVH 137 (419)
T ss_pred cCCCEEEEcCCcccHHHHHHHhcCCeEEEEec
Confidence 379999999877776666665 4788887644
No 86
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=81.28 E-value=3.4 Score=33.20 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=27.0
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 24 FQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 24 ~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
..|.-.-..++++.|..+||+|++++.....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 5688899999999999999999999986543
No 87
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=81.13 E-value=27 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCccEEEecCcc--hhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAW--FIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~--~~~~~vA~~lgiP~v~f 146 (176)
.++|+|.+-... ..+..+++++|+|++..
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 379998874322 23456789999999874
No 88
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=80.64 E-value=4.4 Score=30.99 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=36.8
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
.+.+|++.+.++-.|-.-..-++..|.++|++|+++...-.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp 123 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVP 123 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCC
Confidence 46799999999999999999999999999999999987643
No 89
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=80.55 E-value=4.9 Score=32.57 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=43.3
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCce-EEEcC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFE-FCSFS 69 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r--Gh~VT~i~~~~~~~~~~~~~~i~-~~~l~ 69 (176)
+|+++-....|.+.-...+.+.|.++ +.+||+++...+.......|.|+ ++.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~ 57 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVA 57 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEec
Confidence 58888888889999999999999997 99999999977665444456675 55554
No 90
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=80.44 E-value=8.6 Score=32.19 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=60.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCCCC-CCC-CCCCceEEEcCCCCCCCCCCC-C-CC-CCCHHHH
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLNSP-NSC-NYPHFEFCSFSDDGFSETYQP-S-KV-ADDIPAL 89 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r-Gh~VT~i~~~~~~~-~~~-~~~~i~~~~l~~~~~p~~~~~-~-~~-~~~~~~~ 89 (176)
+|+++. ..+.-+.=+..+.++|.++ ++++.++.+..... ... ....+....++ ....+.- . .+ ..+....
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 77 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFD---IDEKIEILLDSDSNAGMAKS 77 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCC---CCCccccccCCCCCCCHHHH
Confidence 455554 5567777788888999884 78988888764321 100 00011111111 0001000 0 00 1222222
Q ss_pred HHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEe--cCcch-hHHHHHhhcCCCeEEEecc
Q 030502 90 LLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLIT--DAAWF-IAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~--D~~~~-~~~~vA~~lgiP~v~f~~~ 149 (176)
+.. +...+.+++++. +||+||+ |.... .+...|..+|||++.+...
T Consensus 78 ~~~----~~~~~~~~~~~~----------~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 78 MGL----TIIGFSDAFERL----------KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred HHH----HHHHHHHHHHHh----------CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 222 223455555543 6888887 66554 5578889999999966443
No 91
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=79.78 E-value=6.4 Score=33.27 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=23.4
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCE
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFS 44 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~ 44 (176)
..+-+-..+.|.++-...|+++|.+++++
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~ 79 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPD 79 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 34445667889999999999999998755
No 92
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.75 E-value=3.8 Score=33.48 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=31.4
Q ss_pred eEEEec----CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFP----LPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp----~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
||++++ --|.||+.=++.||++|..+|..++|++..+
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~ 42 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQD 42 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccc
Confidence 566655 3466999999999999999999999999865
No 93
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.58 E-value=7.5 Score=29.27 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=43.0
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~ 69 (176)
..+|.+-..|+.|-..-...++..|.++|+.|-=+.++..... ..-.+++++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g-GkR~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG-GKRIGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC-CeEeeeEEEEcc
Confidence 5689999999999999999999999999999976666543321 012478888887
No 94
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=78.72 E-value=5.2 Score=30.57 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=35.1
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.+.+|++.+.++-.|-.-..-++..|..+|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 367899999999999999999999999999999888754
No 95
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.69 E-value=3.7 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=24.8
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 24 FQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 24 ~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 66999999999999999999999998
No 96
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=78.46 E-value=28 Score=26.69 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=43.7
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC-CC-----CCCCCCceEEEcC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PN-----SCNYPHFEFCSFS 69 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~-~~-----~~~~~~i~~~~l~ 69 (176)
.+..|.++..++.|=....+.++.+.+.+|++|.++---... .. ....+++++....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g 83 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMG 83 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECC
Confidence 467899999999999999999999999999999988653211 10 1122578888776
No 97
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=77.25 E-value=6.5 Score=26.90 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=32.4
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++++...+..-|-.-+.-++..|.++||+|.++-..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 678888899999999999999999999999998554
No 98
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=76.98 E-value=5.1 Score=28.28 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=27.6
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
||++.-..+.+=+. ..++.++|.++|++|.++.++.
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCc
Confidence 56665555544444 9999999999999999999874
No 99
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.08 E-value=31 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=24.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+|+++. +.| . ...|++.|.++||+|+..+.....
T Consensus 2 ~ILvlG--GT~--e-gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 2 TVLLMG--GTV--D-SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred eEEEEe--chH--H-HHHHHHHHHhCCCeEEEEEccCCc
Confidence 455554 333 3 789999999999999998876543
No 100
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=75.85 E-value=7.3 Score=30.26 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=36.6
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
++.+|++.+.++-.|-.-..=++..|..+|++|+++...-
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 4689999999999999999999999999999999998764
No 101
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=75.51 E-value=31 Score=25.73 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=22.4
Q ss_pred EEecCCCCCChHHHHHHHHHH-HhCC-CEEEEEeCCC
Q 030502 18 ILFPLPFQGHINPMLQLGSIL-YSEG-FSITIIHTTL 52 (176)
Q Consensus 18 l~vp~p~~GH~~P~l~La~~L-a~rG-h~VT~i~~~~ 52 (176)
+++. .+.||..=|+.|.+.+ -++. ++..+++..+
T Consensus 2 l~v~-gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 2 LVVL-GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred EEEE-cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 4444 4569999999999999 4444 4444444443
No 102
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=74.54 E-value=48 Score=28.09 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHh--CCCEEE---EEeCCCCCCC-CCCCCCceEEEcCCCCCCCC-CCCCCCCCCHHHHHHHHHH-hc
Q 030502 26 GHINPMLQLGSILYS--EGFSIT---IIHTTLNSPN-SCNYPHFEFCSFSDDGFSET-YQPSKVADDIPALLLSLNA-KC 97 (176)
Q Consensus 26 GH~~P~l~La~~La~--rGh~VT---~i~~~~~~~~-~~~~~~i~~~~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~-~~ 97 (176)
|==.-.+.++++|.+ .|++|. ++++..-.+. .-..-+ .+..++ .+ +. ..+....+..+.+ ..
T Consensus 8 ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~-----sgg~~----~~~~~~~~~~~~~gl~ 77 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELP-----SGGFS----YQSLRGLLRDLRAGLV 77 (396)
T ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCC-----CCCcc----CCCHHHHHHHHHhhHH
Confidence 333667899999998 699999 9888643221 000012 222222 22 10 1223333333222 11
Q ss_pred chHHH--HHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEec
Q 030502 98 VVPFR--DCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 98 ~~~l~--~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 148 (176)
...++ .+++++. .++|+|+.=.-+. +...|...|+|++++.+
T Consensus 78 ~~~~~~~~~~~~~~--------~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 78 GLTLGQWRALRKWA--------KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHHHHHHHHHHHh--------hcCCEEEEECcHH-HHHHHHHcCCCceEEEe
Confidence 11222 2344442 3788888833222 67788889999999544
No 103
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=73.60 E-value=36 Score=25.61 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=41.3
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC---CC-CCCC-CCCCCCceEEEcCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT---TL-NSPN-SCNYPHFEFCSFSDDGF 73 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~---~~-~~~~-~~~~~~i~~~~l~~~~~ 73 (176)
+.-|.++..++.|=..-.+.+|.+.+.+|++|.++-- .. ..+. ....-++++.... .++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g-~g~ 68 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMG-TGF 68 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECC-CCC
Confidence 5678889999999999999999999999999976632 21 1110 0011267777776 444
No 104
>PRK11519 tyrosine kinase; Provisional
Probab=72.78 E-value=79 Score=29.15 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=68.0
Q ss_pred CCceEEEecC--CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCC------CCCCCceEEEcCC----CCC----CCC
Q 030502 13 NRRRVILFPL--PFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNS------CNYPHFEFCSFSD----DGF----SET 76 (176)
Q Consensus 13 ~~~~Il~vp~--p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~------~~~~~i~~~~l~~----~~~----p~~ 76 (176)
++.++++++. |+.|=......||..|+..|++|-++-.+...+.. ...+++.-..... +.. .++
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 3556776664 77799999999999999999999999776433221 0111211000000 000 011
Q ss_pred CCCC--CC-CCCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcc----hhHHHHHhhcCCCeEEEec
Q 030502 77 YQPS--KV-ADDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAW----FIAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 77 ~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~----~~~~~vA~~lgiP~v~f~~ 148 (176)
+..+ +. ..+...++ ....++++++.+. .++|.||.|.-- .-+..++...+...++.-.
T Consensus 604 l~~lp~g~~~~~~~ell------~s~~~~~ll~~l~--------~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~ 668 (719)
T PRK11519 604 FDLIPRGQVPPNPSELL------MSERFAELVNWAS--------KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARY 668 (719)
T ss_pred EEEEeCCCCCCCHHHHh------hHHHHHHHHHHHH--------hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEeC
Confidence 1000 00 12222222 1235677787775 379999999632 2356778888776666543
No 105
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=72.25 E-value=39 Score=26.16 Aligned_cols=41 Identities=10% Similarity=0.277 Sum_probs=31.9
Q ss_pred CceEEE-ecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 14 RRRVIL-FPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~-vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
++++-+ +...+.|-..-+++-++....+|-.|.++++....
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~ 44 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT 44 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 344444 44566699999999999999999999999987543
No 106
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=72.17 E-value=34 Score=28.01 Aligned_cols=107 Identities=9% Similarity=0.083 Sum_probs=67.6
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCce-EEEcCCCCCCCCCCCCCCCCCHHHHHHH
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFE-FCSFSDDGFSETYQPSKVADDIPALLLS 92 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r--Gh~VT~i~~~~~~~~~~~~~~i~-~~~l~~~~~p~~~~~~~~~~~~~~~~~~ 92 (176)
+|+++-.-+.|.+.=...+.+.|.++ +.+|++++...+.......|.|+ ++.++ .... ......+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~-~~~~--------~~~~~~~~-- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLD-RKKA--------KAGERKLA-- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeC-hhhh--------cchHHHHH--
Confidence 58888888899999999999999996 89999999987655444446665 44444 1110 00000010
Q ss_pred HHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEe
Q 030502 93 LNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 93 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 147 (176)
..-+++++++. .++|++|.=........++...|+|.-+-+
T Consensus 70 -------~~~~l~~~lr~-------~~yD~vidl~~~~~s~ll~~l~~a~~riG~ 110 (344)
T TIGR02201 70 -------NQFHLIKVLRA-------NRYDLVVNLTDQWMVAILVKLLNARVKIGF 110 (344)
T ss_pred -------HHHHHHHHHHh-------CCCCEEEECCcchHHHHHHHhcCCCeEEee
Confidence 11223455544 489999964333345677888888865543
No 107
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=72.17 E-value=8.1 Score=29.37 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 030502 31 MLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~ 52 (176)
-..||+++..||++||++....
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 4678999999999999999985
No 108
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.13 E-value=6.7 Score=27.68 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=24.9
Q ss_pred eEEEecCCCCC---ChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 16 RVILFPLPFQG---HINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 16 ~Il~vp~p~~G---H~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
+|+|+--|..+ .-.....|+++.++|||+|.++...+.
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 45555544433 335678899999999999999998753
No 109
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=69.95 E-value=9.9 Score=28.35 Aligned_cols=113 Identities=10% Similarity=0.156 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHH-HhCCCEEEEEeCCCCCCCCCCCCCceEEEcCCCC------------CCCC-----CCCCCCCCCHH
Q 030502 26 GHINPMLQLGSIL-YSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDG------------FSET-----YQPSKVADDIP 87 (176)
Q Consensus 26 GH~~P~l~La~~L-a~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~------------~p~~-----~~~~~~~~~~~ 87 (176)
+.+.=.++.+++| .+.|.+|-+.-+.... .....-++.++.++..+ .... +.+ ...+..
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~ta~-~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~--~~~~~~ 93 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGTAE-LLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN--IIPGLE 93 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHHHH-HHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS---SCCHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHHHH-HHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc--ccHHHH
Confidence 6677888999999 7899999887664211 00111234444444100 0000 000 011222
Q ss_pred HHHHHHHH--------hcchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecccHH
Q 030502 88 ALLLSLNA--------KCVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTDSIA 152 (176)
Q Consensus 88 ~~~~~~~~--------~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 152 (176)
.+..++. ...+.++..++++.. .++|+||.+.. +..+|+++|+|++.+.++.-+
T Consensus 94 -~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~-------~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 94 -SIEELLGVDIKIYPYDSEEEIEAAIKQAKA-------EGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp -HHHHHHT-EEEEEEESSHHHHHHHHHHHHH-------TT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred -HHHHHhCCceEEEEECCHHHHHHHHHHHHH-------cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 2222221 124456777777765 57999999875 578999999999888775433
No 110
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=69.82 E-value=52 Score=27.06 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=41.4
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCceEE
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFEFC 66 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r--Gh~VT~i~~~~~~~~~~~~~~i~~~ 66 (176)
+|+++-..+-|.+.=...+.+.|.++ +.+|++++.+......+..|.++-+
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~v 54 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEA 54 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEE
Confidence 68999989999999999999999995 8999999987665544445666543
No 111
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=69.74 E-value=21 Score=29.04 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=39.9
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCce
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFE 64 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r--Gh~VT~i~~~~~~~~~~~~~~i~ 64 (176)
||+++-..+.|.+.-...+.+.|.++ +.+||+++...+.+.....|.++
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd 52 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVD 52 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCcc
Confidence 79999989999999999999999996 89999999876554433345555
No 112
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=69.62 E-value=11 Score=26.29 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=33.3
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
||++...++-.|-.=..-++.-|..+|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5788889999999999999999999999999998764
No 113
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=69.45 E-value=11 Score=28.62 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=36.6
Q ss_pred ceEEEec---CCC-CCCh-HHHHHHHHHHHhCCCEEEEEeCCCCCCC-CCCCCCceEEEcC
Q 030502 15 RRVILFP---LPF-QGHI-NPMLQLGSILYSEGFSITIIHTTLNSPN-SCNYPHFEFCSFS 69 (176)
Q Consensus 15 ~~Il~vp---~p~-~GH~-~P~l~La~~La~rGh~VT~i~~~~~~~~-~~~~~~i~~~~l~ 69 (176)
.||+++. .|+ +|=+ .-..+|+..|+++||+||+.+....... .....+++.+.++
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 4555554 344 3444 5567899999999999999987654422 2234678887777
No 114
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=69.43 E-value=5.6 Score=31.22 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 27 HINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 27 H~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
|+..|...+.+|.++|++|.++..++
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56899999999999999999999875
No 115
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=68.78 E-value=7.8 Score=29.84 Aligned_cols=38 Identities=16% Similarity=-0.006 Sum_probs=28.9
Q ss_pred CceEEEecCCCCCChHH-HHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINP-MLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P-~l~La~~La~rGh~VT~i~~~~ 52 (176)
..+|++.- .|.+...- ..+++++|.++|++|.++.++.
T Consensus 5 ~k~IllgV-TGsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 5 GKRIGFGL-TGSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCEEEEEE-cCHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 44665444 45556666 6999999999999999999874
No 116
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=68.28 E-value=26 Score=25.37 Aligned_cols=142 Identities=12% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceE----EEcCCCCCCCCCCCCC-CCCCHHHHHHHHH--
Q 030502 22 LPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEF----CSFSDDGFSETYQPSK-VADDIPALLLSLN-- 94 (176)
Q Consensus 22 ~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~----~~l~~~~~p~~~~~~~-~~~~~~~~~~~~~-- 94 (176)
-++.|-..-.+.|++.|+++|.+|-++=+...... .....+++ ...+ ..+. ...... ..+..........
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-~~d~d~~~i~~~~~~~-~~~~-~~~~~~~~~~~~p~~~~~~~~~ 82 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-KTNSDALLLQNISGTA-LDWD-EVNPYAFALPLSPHIAADQEGR 82 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-CCchHHHHHHHHcCCC-Cchh-ccCCeeeCCCCChHHHHHHhCC
Confidence 46778899999999999999999988622110000 00000000 0000 0000 000000 0000011111110
Q ss_pred HhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcc---------hhHHHHHhhcCCCeEEEeccc-HHHHHHHHhhHhHH
Q 030502 95 AKCVVPFRDCLANKLMSNSQESKDSFACLITDAAW---------FIAHSVANDFRLPTIVLLTDS-IAASLSYAAFPILR 164 (176)
Q Consensus 95 ~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~---------~~~~~vA~~lgiP~v~f~~~~-a~~~~~~~~~p~l~ 164 (176)
....+.+.+.++++. ..+|+||.|... ....++++.++.|.+...... ...-........++
T Consensus 83 ~~~~~~i~~~~~~l~--------~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~ 154 (166)
T TIGR00347 83 PIDLEELSKHLRTLE--------QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHAR 154 (166)
T ss_pred CCCHHHHHHHHHHHH--------hcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 011122444455553 379999988741 134679999999998876543 33444455566666
Q ss_pred hCCCCCCcccc
Q 030502 165 EKGYLPIQGII 175 (176)
Q Consensus 165 ~~~~~~~~~~~ 175 (176)
+.| +++.++|
T Consensus 155 ~~~-~~i~gvv 164 (166)
T TIGR00347 155 QTG-LTLAGVI 164 (166)
T ss_pred HCC-CCeEEEE
Confidence 655 6655543
No 117
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.03 E-value=43 Score=26.71 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=28.8
Q ss_pred chHHHHHHHHHhhcCCCCCCCCccEEEecCcchh---HHHHHhhcCCCeEE
Q 030502 98 VVPFRDCLANKLMSNSQESKDSFACLITDAAWFI---AHSVANDFRLPTIV 145 (176)
Q Consensus 98 ~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~---~~~vA~~lgiP~v~ 145 (176)
.+.++.++++++ +-++...|..... +..+|++.|||++.
T Consensus 137 ~~aM~~~m~~Lk---------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK---------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH---------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 445677777774 5678888875543 36889999999987
No 118
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.67 E-value=20 Score=30.45 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=45.8
Q ss_pred CCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC--CCCCCCCceEEEcC
Q 030502 12 RNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP--NSCNYPHFEFCSFS 69 (176)
Q Consensus 12 ~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~--~~~~~~~i~~~~l~ 69 (176)
.++.|+.++-..-.||--=|---|.-|+..|++|.++.-....+ ..-++|+|+++.++
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~ 69 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMP 69 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCC
Confidence 34678887877788998888889999999999999998654332 22247999999998
No 119
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.54 E-value=12 Score=29.81 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=35.6
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
...+++...||.|=..=...++.+|..+|+.|+|++..+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el 144 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL 144 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 5578999999999999999999999988999999998754
No 120
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=67.02 E-value=5.1 Score=34.28 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|==.-.-.|+++|+++||+|+++++.
T Consensus 17 Gl~~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 17 GLGDVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 33355678999999999999999974
No 121
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=65.98 E-value=5.5 Score=31.43 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC
Q 030502 29 NPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.-.-.|+++|+++||+|+++++.
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHhcCCeEEEEEcc
Confidence 66778999999999999999985
No 122
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=65.62 E-value=21 Score=23.01 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=25.4
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITII 48 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i 48 (176)
++++.-....|..=+.++|+.|+++|+.|...
T Consensus 18 ~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 18 VVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 44444456699999999999999999987654
No 123
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=65.43 E-value=16 Score=29.20 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 27 HINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 27 H~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
--.-+.++++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 34668899999999999999998754
No 124
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=65.35 E-value=53 Score=24.30 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=40.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC---C-CC--CCCCCCceEEEcC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN---S-PN--SCNYPHFEFCSFS 69 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~---~-~~--~~~~~~i~~~~l~ 69 (176)
+.-|-++..++.|=....+.+|.+.+.+|++|.++---.. . +. ...-+++++....
T Consensus 2 ~G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g 63 (159)
T cd00561 2 KGLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMG 63 (159)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECC
Confidence 3457788899999999999999999999999999543211 1 10 1123578888776
No 125
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=65.23 E-value=13 Score=27.09 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=35.7
Q ss_pred CCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 12 RNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 12 ~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.++++|++.+....||=.=.--+++.|++.|++|.+....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 3689999999888899999999999999999999887654
No 126
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=65.07 E-value=12 Score=32.15 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|=-.-.-.|+++|+++||+|.++++.
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~ 43 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPA 43 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 44466789999999999999999974
No 127
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=63.21 E-value=9.3 Score=29.34 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCCC
Q 030502 30 PMLQLGSILYSEGFSITIIHTTLNSPN 56 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~~~~~~~ 56 (176)
=+..|.+.|.+.||+|+++.+..+.+.
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 367889999778899999999876543
No 128
>PLN02316 synthase/transferase
Probab=61.88 E-value=11 Score=36.21 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=29.6
Q ss_pred CceEEEecC---CC--CCCh-HHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPL---PF--QGHI-NPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~---p~--~GH~-~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
..||++++. |. .|-+ .-.-.|+++|+++||+|.++++.-
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 468998872 32 2333 455899999999999999999953
No 129
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=61.66 E-value=79 Score=25.69 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=39.3
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCCCCCCCCCCCce
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFE 64 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r--Gh~VT~i~~~~~~~~~~~~~~i~ 64 (176)
||+++-.-+-|.+.=...+.+.|.++ +.+|++++.+.+.......|.|+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id 51 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIR 51 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhc
Confidence 58888888899999999999999996 89999999876544444445654
No 130
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=61.19 E-value=1.1e+02 Score=26.38 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.7
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.++.++..|.. ...+++-|.+-|-+|..+.+..
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~ 318 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAI 318 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCC
Confidence 47788877765 7889999999999999887653
No 131
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.15 E-value=9.6 Score=32.66 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=27.1
Q ss_pred eEEEecCC-CC--CChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLP-FQ--GHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p-~~--GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
-+++=|+. .- ||+.|++-| +.|++.||+|+++..+.
T Consensus 36 Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 36 YIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred EEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 34555543 22 999999887 67999999999998863
No 132
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=60.67 E-value=13 Score=28.18 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=28.0
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.||++.-..+.| ..=..++.+.|.++|++|.++.++.
T Consensus 2 k~Ill~vtGsia-a~~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIA-AYKAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEEChh
Confidence 456655544444 4458999999999999999999875
No 133
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=59.83 E-value=13 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=27.0
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
||++.-..+.|=+.-.+++.++|.++|++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 4554444444555555699999999999999998864
No 134
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=59.18 E-value=1.4e+02 Score=27.15 Aligned_cols=120 Identities=14% Similarity=0.087 Sum_probs=61.7
Q ss_pred CCCCCChHHHHHHHHHHHhC------CCEEEEEeCCCCCCC---------CCCCCCceEEEcCCCCC-CCCCCCCCCC--
Q 030502 22 LPFQGHINPMLQLGSILYSE------GFSITIIHTTLNSPN---------SCNYPHFEFCSFSDDGF-SETYQPSKVA-- 83 (176)
Q Consensus 22 ~p~~GH~~P~l~La~~La~r------Gh~VT~i~~~~~~~~---------~~~~~~i~~~~l~~~~~-p~~~~~~~~~-- 83 (176)
..+.|-+.=+.+|--.-.++ ++.|-+++++...+. .+..|++++..+..+.+ ..|.+..-+.
T Consensus 200 g~~~g~~~y~rnl~li~~~~~~~~~~~~kIfI~AGE~SGDlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~e 279 (608)
T PRK01021 200 CYGCGLFPSLANLRIAYKEARRKPFSNTSCFISAGEHSGDTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEE 279 (608)
T ss_pred ccccchhHHHHHHHHHHhhcccccccCCeEEEEeccccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHH
Confidence 34556665555553333332 456666666543221 11347888888773111 1232221111
Q ss_pred ---CCHHHHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEe-cC--cchhHHHHHhhcCC--CeEEEecc
Q 030502 84 ---DDIPALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLIT-DA--AWFIAHSVANDFRL--PTIVLLTD 149 (176)
Q Consensus 84 ---~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~-D~--~~~~~~~vA~~lgi--P~v~f~~~ 149 (176)
.++.+.+..+ ......++++.+.+.+ .+||++|. |+ |......-+++.|+ |.+.+.+-
T Consensus 280 LsVmG~~EVL~~l-~~l~~~~~~l~~~i~~-------~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsP 345 (608)
T PRK01021 280 FQVSGFWEVLLAL-FKLWYRYRKLYKTILK-------TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCP 345 (608)
T ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc
Confidence 1222222222 2233445666666654 58999887 86 33345677788896 88776543
No 135
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.49 E-value=16 Score=29.78 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 11 PRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 11 ~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+.++.+|+++...+.| .-+|..|+++||+|+++.-..
T Consensus 2 ~~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4456789999766655 457888999999999998653
No 136
>PLN02924 thymidylate kinase
Probab=58.46 E-value=26 Score=27.25 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=37.6
Q ss_pred CCCccCCcCCCCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 030502 1 METQQDPCKLPRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITII 48 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i 48 (176)
|||-.+|... ..-|++-...|.|=-.-...|++.|..+|+.|.+.
T Consensus 6 ~~~~~~~~~~---g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 6 METESSVESR---GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred cCCCCCcCCC---CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 6777777644 55788999999999999999999999999987544
No 137
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.24 E-value=74 Score=23.56 Aligned_cols=91 Identities=7% Similarity=0.036 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCC-CC-----CCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcchHHH
Q 030502 29 NPMLQLGSILYSEGFSITIIHTTLNS-PN-----SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVPFR 102 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~~~~~-~~-----~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (176)
.-+..|.+....+|.+|.++.+.... .. ....|+++++... +++-. ....+
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~-~g~f~----------------------~~~~~ 91 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYH-HGYFD----------------------EEEEE 91 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEec-CCCCC----------------------hhhHH
Confidence 34556666677789999999886421 11 1235788888665 22211 11233
Q ss_pred HHHHHHhhcCCCCCCCCccEEEecCcch----hHHHHHhhcCCCeEEEeccc
Q 030502 103 DCLANKLMSNSQESKDSFACLITDAAWF----IAHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 103 ~~l~~l~~~~~~~~~~~~d~vI~D~~~~----~~~~vA~~lgiP~v~f~~~~ 150 (176)
++++.+++ .++|+|++-+-.+ |.....++++.+ +.+...+
T Consensus 92 ~i~~~I~~-------~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~ 135 (172)
T PF03808_consen 92 AIINRINA-------SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGG 135 (172)
T ss_pred HHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECc
Confidence 44555554 4899999988776 677777888888 4444444
No 138
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=56.64 E-value=46 Score=26.44 Aligned_cols=44 Identities=5% Similarity=0.088 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCccEEEecCcchh--HHHHHhhcCCCeEEEeccc
Q 030502 100 PFRDCLANKLMSNSQESKDSFACLITDAAWFI--AHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 100 ~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~ 150 (176)
.+.++.+.+++ .++.||+++..... +..+|++.|++.+.+-+.+
T Consensus 205 ~l~~l~~~ik~-------~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 205 DLKRLIDLAKE-------KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHH-------cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 45566666655 58999999987653 4689999999998887655
No 139
>PLN02572 UDP-sulfoquinovose synthase
Probab=56.61 E-value=27 Score=30.07 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=27.7
Q ss_pred CccCCcCCCCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 3 TQQDPCKLPRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 3 ~~~~~~~~~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
|-++|+.....+.+-++++ .+.|.+ -..|+++|+++|++|+.+-
T Consensus 35 ~~~~~~~~~~~~~k~VLVT-GatGfI--Gs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 35 TPSAPGSSSSSKKKKVMVI-GGDGYC--GWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCCCCCCCccccCCEEEEE-CCCcHH--HHHHHHHHHHCCCeEEEEe
Confidence 4455555544433333444 344544 5678999999999999864
No 140
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=56.44 E-value=22 Score=31.17 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=30.0
Q ss_pred CceEEEecCCCCCChHHH------------HHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPM------------LQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~------------l~La~~La~rGh~VT~i~~~~ 52 (176)
..||++...|-.=-+.|. ..||++++.||++||+++++.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 457777776666666554 578999999999999999764
No 141
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=55.74 E-value=18 Score=28.53 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=30.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
=|.+-.+|+.|-..-.-+|+++|.+++|+|..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 35667789999999999999999999998876654
No 142
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=55.72 E-value=70 Score=24.03 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=50.3
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC------CCCCCCceEEEcCCCCCCCCCCCCCCCCCHH
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN------SCNYPHFEFCSFSDDGFSETYQPSKVADDIP 87 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~------~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~ 87 (176)
+.-|-++...+.|=....+.+|-+-+.+|.+|.++---..... ...-+++++.... .++... ..+..
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g-~~f~~~------~~~~~ 75 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFG-KGFVWR------MNEEE 75 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE---TT----------GGGHH
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcC-Cccccc------CCCcH
Confidence 4567888999999999999999999999999998875432111 0122457777766 333211 01111
Q ss_pred HHHHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEecCcch
Q 030502 88 ALLLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLITDAAWF 130 (176)
Q Consensus 88 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~ 130 (176)
. + ...+.+.++...+.+.. ..+|+||.|-...
T Consensus 76 ~--~--~~~~~~~~~~a~~~i~~-------~~~dlvILDEi~~ 107 (172)
T PF02572_consen 76 E--D--RAAAREGLEEAKEAISS-------GEYDLVILDEINY 107 (172)
T ss_dssp H--H--HHHHHHHHHHHHHHTT--------TT-SEEEEETHHH
T ss_pred H--H--HHHHHHHHHHHHHHHhC-------CCCCEEEEcchHH
Confidence 1 0 22333445444444432 5899999997654
No 143
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=55.63 E-value=33 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=23.0
Q ss_pred EecCCCCCChHHHHHHHHHHHhC-C--CEEEEEe
Q 030502 19 LFPLPFQGHINPMLQLGSILYSE-G--FSITIIH 49 (176)
Q Consensus 19 ~vp~p~~GH~~P~l~La~~La~r-G--h~VT~i~ 49 (176)
+-..-|.||......|.+.|..+ | .+|+++-
T Consensus 4 ls~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d 37 (382)
T PLN02605 4 LMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVD 37 (382)
T ss_pred EEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEe
Confidence 33457779999999999999875 4 4555653
No 144
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=55.60 E-value=21 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 29 NPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
...+++|..|+++|.+||++...+.
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccch
Confidence 4568999999999999999987643
No 145
>PRK14098 glycogen synthase; Provisional
Probab=54.98 E-value=24 Score=30.80 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCceEEEecC---CCC---CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 13 NRRRVILFPL---PFQ---GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 13 ~~~~Il~vp~---p~~---GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++.||++++. |.. |=-.-+-.|.++|+++||+|.++.+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3578888763 221 44477889999999999999999984
No 146
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.84 E-value=87 Score=27.29 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=37.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
..-|+++..-|.|-....-.||+.|..+|+.|-++..+-+.+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 345788889999999999999999999999999999987664
No 147
>PRK14099 glycogen synthase; Provisional
Probab=54.63 E-value=25 Score=30.67 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCceEEEecC---CCC---CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 13 NRRRVILFPL---PFQ---GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 13 ~~~~Il~vp~---p~~---GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++.||++++. |.. |=-.-+-.|.++|+++||+|.++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3567887763 322 44477889999999999999999984
No 148
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=53.90 E-value=26 Score=27.58 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=33.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC--CCCCceEEEcC
Q 030502 23 PFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC--NYPHFEFCSFS 69 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~--~~~~i~~~~l~ 69 (176)
...|.-.....|++.|.++||+|.+++......... ...+++++.++
T Consensus 10 ~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~ 58 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLG 58 (365)
T ss_pred cCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEe
Confidence 446899999999999999999999998754332110 12466666655
No 149
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=53.57 E-value=28 Score=26.56 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=33.0
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
-|+++...|.|=......||..+..+|..|.+++.+.+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 367888899999999999999999999999999998655
No 150
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=53.33 E-value=19 Score=22.32 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 030502 31 MLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~ 51 (176)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 467789999999999998554
No 151
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=53.20 E-value=31 Score=28.68 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=27.5
Q ss_pred chHHHHHHHHHhhcCCCCCCCCccEEEe--cCcch-hHHHHHhhcCCCeEEEecc
Q 030502 98 VVPFRDCLANKLMSNSQESKDSFACLIT--DAAWF-IAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 98 ~~~l~~~l~~l~~~~~~~~~~~~d~vI~--D~~~~-~~~~vA~~lgiP~v~f~~~ 149 (176)
...+.+.+++. +||+||+ |-+.. .+...|..++||.+..-..
T Consensus 56 ~~~~~~~~~~~----------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 56 IIELADVLERE----------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHH----------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHhc----------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 34566666654 6788776 87765 4578889999998887554
No 152
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=53.08 E-value=19 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeC
Q 030502 29 NPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~ 50 (176)
.|.+.|+++|.++|.+|.+.=+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 6899999999999999888744
No 153
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=52.59 E-value=41 Score=23.26 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=33.0
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
||++..-++.|=......+++.|+++|.+|-++-++.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888999999999999999999999999888875
No 154
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=52.18 E-value=42 Score=24.44 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=33.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+++...||.|=......+++.|+++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777899999999999999999999999999987643
No 155
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=51.88 E-value=53 Score=28.52 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=36.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
...|+++..+|.|=......||+.|..+|+.|.++..+.+.+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 446778889999999999999999999999999999876543
No 156
>PRK07773 replicative DNA helicase; Validated
Probab=51.87 E-value=73 Score=30.20 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.2
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLNS 54 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~r-Gh~VT~i~~~~~~ 54 (176)
|++..-|+.|=..-.++++...+.+ |..|.|++.+...
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~ 258 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSK 258 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCH
Confidence 5566689999999999999998865 8889999877543
No 157
>PRK09620 hypothetical protein; Provisional
Probab=50.54 E-value=40 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 030502 31 MLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~ 51 (176)
-..||++|..+|++|+++...
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 478999999999999998764
No 158
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=50.37 E-value=38 Score=25.45 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCccEEEec--CcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITD--AAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D--~~~~~~~~vA~~lgiP~v~f 146 (176)
.++|.|++= ...+.+..+|.++|+|.+..
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 469999983 24566789999999999985
No 159
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.20 E-value=53 Score=26.40 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=34.1
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
.-|+++..+|.|=..-...||..|+.+|+.|.++..+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 346677788889999999999999999999999998854
No 160
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=50.19 E-value=15 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=25.8
Q ss_pred EEEecCC-CC--CChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 17 VILFPLP-FQ--GHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 17 Il~vp~p-~~--GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+++=|+. .. ||+.|++.+ +.|++.||++.++..+.
T Consensus 35 ~G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 35 VGFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred EeeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 3455544 22 999997665 68899999999988754
No 161
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=49.66 E-value=43 Score=26.36 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=36.2
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
..-+++...|+.|...-.++++...+++|..|-+++++...
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence 44577888999999999999999999999999999997644
No 162
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=49.62 E-value=51 Score=20.56 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=27.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
+++...++.|=-.-...+++.|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445556678888999999999999999998775
No 163
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.51 E-value=30 Score=29.06 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=23.2
Q ss_pred CCccEEEecCcchhH----------HHHHhhcCCCeEEEec
Q 030502 118 DSFACLITDAAWFIA----------HSVANDFRLPTIVLLT 148 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~----------~~vA~~lgiP~v~f~~ 148 (176)
-+||++|+-+.+..+ ..|.+++|||.++...
T Consensus 79 ~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 79 LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 389999998866532 2466789999998644
No 164
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=49.34 E-value=21 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 23 PFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.+.|-+- ..+|.++|.++|++|.++.|+.
T Consensus 8 Gsiaa~k-a~~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 8 GASGVIY-GIRLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred CHHHHHH-HHHHHHHHHHCCCEEEEEECcc
Confidence 3334443 3789999999999999999975
No 165
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=48.78 E-value=34 Score=29.83 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=30.4
Q ss_pred CceEEEecCCCCCC-----hHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGH-----INPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH-----~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
..+|+++| ++|= .+...+|++.|.+||.+|.|...+-
T Consensus 306 A~~ViIVP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 306 SHSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CCcEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 45788887 5553 3789999999999999999988763
No 166
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=47.96 E-value=86 Score=26.62 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCCccEEEe-cC--cchhHHHHHhhcCCC--eEEE
Q 030502 99 VPFRDCLANKLMSNSQESKDSFACLIT-DA--AWFIAHSVANDFRLP--TIVL 146 (176)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~d~vI~-D~--~~~~~~~vA~~lgiP--~v~f 146 (176)
..++++.+.+.+ .+||++|. |+ |.......+++.|+| .+.+
T Consensus 69 ~~~~~~~~~~~~-------~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyY 114 (373)
T PF02684_consen 69 RLFRKLVERIKE-------EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYY 114 (373)
T ss_pred HHHHHHHHHHHH-------cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEE
Confidence 344555555554 58998886 86 334456777889988 5544
No 167
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=47.55 E-value=19 Score=27.74 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=23.3
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+|+++. +.|+. --.+.++...|||+||-++-..
T Consensus 2 KIaiIg--AsG~~--Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 2 KIAIIG--ASGKA--GSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred eEEEEe--cCchh--HHHHHHHHHhCCCeeEEEEeCh
Confidence 566665 33433 3467899999999999998653
No 168
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=47.46 E-value=44 Score=24.35 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=30.0
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|.++...+.|=..-+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45677788898899999999999999999998654
No 169
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.76 E-value=28 Score=25.30 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 030502 31 MLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~ 52 (176)
-..+|..|+++||+|++...+.
T Consensus 11 G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 11 GTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHHcCCEEEEEeccH
Confidence 4589999999999999999863
No 170
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.75 E-value=33 Score=27.91 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=26.7
Q ss_pred CCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 12 RNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 12 ~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+.+.+|.++.....| ..+|+.|+++||+|+++...
T Consensus 2 ~~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 345688888654444 57899999999999988764
No 171
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.60 E-value=1.3e+02 Score=26.03 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=35.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
-|.|+..-+.|-....-.||..+..+|+.+.+++.+-+..
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 3667778889999999999999999999999999987653
No 172
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=46.59 E-value=40 Score=29.23 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=35.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
-|+++..+|.|=......||..|..+|+.|.+++++.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 477888899999999999999999999999999998655
No 173
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=46.38 E-value=81 Score=25.41 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=34.0
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhC-C-CEEEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSE-G-FSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~r-G-h~VT~i~~~~~~ 54 (176)
...|+|+...|.|=..-...|+..++.+ | +.|.+++.+.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 3457778788889999999999999987 5 999999987543
No 174
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=45.99 E-value=71 Score=26.76 Aligned_cols=32 Identities=6% Similarity=-0.052 Sum_probs=22.3
Q ss_pred CCccEEEe-cC--cchhHHHHHhhc--CCCeEEEecc
Q 030502 118 DSFACLIT-DA--AWFIAHSVANDF--RLPTIVLLTD 149 (176)
Q Consensus 118 ~~~d~vI~-D~--~~~~~~~vA~~l--giP~v~f~~~ 149 (176)
.+||++|. |+ |.....--+++. |||.+.+.+-
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~P 111 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILP 111 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc
Confidence 37888887 86 334456667777 7999887553
No 175
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=45.91 E-value=2.8 Score=22.92 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=18.1
Q ss_pred EecCCCCCChHHHHHHHHHHHhCCC
Q 030502 19 LFPLPFQGHINPMLQLGSILYSEGF 43 (176)
Q Consensus 19 ~vp~p~~GH~~P~l~La~~La~rGh 43 (176)
+=++|++|-+||-+++-.-|-+.||
T Consensus 15 FPTFPGqGP~NPKir~Pyplpn~g~ 39 (39)
T PF08026_consen 15 FPTFPGQGPFNPKIRWPYPLPNPGH 39 (39)
T ss_pred CCcCCCCCCCCccccccccCCCCCC
Confidence 3458999999998877666655554
No 176
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=45.31 E-value=24 Score=27.62 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=23.0
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|=+++-.+.|- --..|++.|+++|++|+++...
T Consensus 17 VR~itN~SSG~--iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 17 VRGITNHSTGQ--LGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred ceeecCccchH--HHHHHHHHHHhCCCEEEEEECc
Confidence 33444444443 3578899999999999998753
No 177
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=45.18 E-value=38 Score=25.41 Aligned_cols=32 Identities=13% Similarity=-0.032 Sum_probs=21.5
Q ss_pred CCccEEEecCcchhH--HHHHhhcCCCeEEEecc
Q 030502 118 DSFACLITDAAWFIA--HSVANDFRLPTIVLLTD 149 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~~~ 149 (176)
+++.-+|.|+|++.+ ...|.++|--++.+=..
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~ 222 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEID 222 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESS
T ss_pred hccceeeehhhhccChHHHHHHHcCCeEEEEeCC
Confidence 456778999999866 67789999888876443
No 178
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.06 E-value=47 Score=21.35 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=26.9
Q ss_pred eEEEecCCCC--CChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 16 RVILFPLPFQ--GHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 16 ~Il~vp~p~~--GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.|+++|.... .+..-.+.++..|.+.|..|.+-..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5778886543 4667788999999999999987544
No 179
>PLN00016 RNA-binding protein; Provisional
Probab=44.71 E-value=33 Score=28.57 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=26.8
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+.+|+++..=+.|+=.--..|++.|.++||+|+.++-..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 456887722222333445788999999999999988643
No 180
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=44.64 E-value=99 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=24.6
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 22 LPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 22 ~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
-++.|-..-.+.|++.|.++|++|-++=
T Consensus 8 ~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 8 DTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4667999999999999999999998865
No 181
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.61 E-value=25 Score=24.88 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=28.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEE
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCS 67 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~ 67 (176)
+.+|+=+...+ .+.+|++|+++|++|+..-..... ...+++|+.
T Consensus 14 ~gkVvEVGiG~------~~~VA~~L~e~g~dv~atDI~~~~----a~~g~~~v~ 57 (129)
T COG1255 14 RGKVVEVGIGF------FLDVAKRLAERGFDVLATDINEKT----APEGLRFVV 57 (129)
T ss_pred CCcEEEEccch------HHHHHHHHHHcCCcEEEEeccccc----CcccceEEE
Confidence 44555554433 589999999999888776544321 125677765
No 182
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=44.54 E-value=53 Score=27.26 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=33.3
Q ss_pred CCccCCcCCCCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 2 ETQQDPCKLPRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 2 ~~~~~~~~~~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|| ..+...+..+.+|.|+.....| ..+++.|...||.||+..-.
T Consensus 24 ~~-~~s~~~~~s~~~iGFIGLG~MG-----~~M~~nLik~G~kVtV~dr~ 67 (327)
T KOG0409|consen 24 ET-AMSSRITPSKTRIGFIGLGNMG-----SAMVSNLIKAGYKVTVYDRT 67 (327)
T ss_pred cc-cccccCCcccceeeEEeeccch-----HHHHHHHHHcCCEEEEEeCc
Confidence 44 3344446667889999877776 46789999999999998754
No 183
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=44.42 E-value=50 Score=26.37 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=32.7
Q ss_pred ceEEEecC--CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 15 RRVILFPL--PFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 15 ~~Il~vp~--p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
.+|.++++ .+.|-....-.++..||.+|+.|.++-.+--.
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGL 43 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL 43 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence 46667775 56689999999999999999999999876433
No 184
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=44.21 E-value=55 Score=22.18 Aligned_cols=35 Identities=14% Similarity=0.011 Sum_probs=29.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++....++..|-.-..-++..|.++|++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 45556688899999999999999999999998654
No 185
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=44.19 E-value=62 Score=25.01 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=27.2
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEEecc
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 149 (176)
..+.+||+|---..+..-|++.|||.+++..-
T Consensus 28 a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k 59 (200)
T COG0299 28 AEIVAVISDKADAYALERAAKAGIPTVVLDRK 59 (200)
T ss_pred cEEEEEEeCCCCCHHHHHHHHcCCCEEEeccc
Confidence 36899999987777899999999999987553
No 186
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=44.09 E-value=61 Score=24.74 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.7
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+.+...|+.|-..-.++++...+.+|..|.|+.++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45677899999999999999999999999999988
No 187
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=43.55 E-value=54 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=31.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
...+++...+|.|=..-...+++++..+|+.|.|++..+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 457899999999988889999999999999999998753
No 188
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=43.47 E-value=29 Score=25.69 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
+..+|+++..++- -=-=-+.+||+|+++|++|+++..
T Consensus 24 ~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 24 KGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp TT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 4667777775541 012357789999999999999554
No 189
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=43.22 E-value=32 Score=25.89 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=26.9
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
||++.- .|.+...-...+.+.|.++|++|.++.++.
T Consensus 2 ~I~lgv-tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAV-TGSIAAYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEE-cCHHHHHHHHHHHHHHHHCCCEEEEEEChH
Confidence 444443 344556667799999999999999999874
No 190
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=43.01 E-value=66 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=33.5
Q ss_pred CcCCCCCCceEEEec-C-CCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 7 PCKLPRNRRRVILFP-L-PFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 7 ~~~~~~~~~~Il~vp-~-p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
|-+.+.++.+|..|. . +|.|=......||..|+.+|++|-++=.+.
T Consensus 113 ~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 113 PHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 334444444554444 3 777999999999999999999998886553
No 191
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=42.89 E-value=1.8e+02 Score=23.60 Aligned_cols=37 Identities=5% Similarity=-0.034 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcC
Q 030502 29 NPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~ 69 (176)
.-..+|+++|+++ |+|++++..... ....+++...++
T Consensus 20 ~~v~~l~~~l~~~-~~v~v~~~~~~~---~~~~~~~~~~~~ 56 (388)
T TIGR02149 20 VHVEELTRELARL-MDVDVRCFGDQR---FDSEGLTVKGYR 56 (388)
T ss_pred HHHHHHHHHHHHh-cCeeEEcCCCch---hcCCCeEEEEec
Confidence 4566999999987 777777754322 112355555544
No 192
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=42.79 E-value=27 Score=28.21 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=25.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+.+-++++..+.| --.++|++||.|||+|.++.-.
T Consensus 5 ~~~~~lITGASsG---IG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 5 KGKTALITGASSG---IGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCcEEEEECCCch---HHHHHHHHHHHCCCEEEEEeCc
Confidence 3344556655554 4689999999999999998754
No 193
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=42.77 E-value=54 Score=23.48 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.3
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.|.++.+-..|=..-+..|.++|.++|++|.++-..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 577888888899999999999999999999866543
No 194
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=42.76 E-value=82 Score=28.01 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=33.9
Q ss_pred chHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEecc
Q 030502 98 VVPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 98 ~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 149 (176)
.+..++.++++++ .++++||.|.. +..+|+++|++.+.....
T Consensus 131 ~~e~~~~~~~l~~-------~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRA-------RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHH-------CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 4456777888876 58999999985 578999999999988664
No 195
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=42.65 E-value=56 Score=29.47 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=26.6
Q ss_pred CCCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 10 LPRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 10 ~~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
+..+..++++|. .+.|. --..++++|+++||+|+.+.-
T Consensus 75 ~~~~~gKvVLVT-GATGg--IG~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 75 LDTKDEDLAFVA-GATGK--VGSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred cccCCCCEEEEE-CCCCH--HHHHHHHHHHHCCCeEEEEeC
Confidence 333455666666 34454 478899999999999988754
No 196
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=42.64 E-value=62 Score=25.92 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=27.3
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCE
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFS 44 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~ 44 (176)
+=|+++..|..|--.-..+|.+.|+++|+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 457888899999999999999999999976
No 197
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=42.58 E-value=1.7e+02 Score=23.05 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=39.3
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCCCCCCCCCCCce
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEG--FSITIIHTTLNSPNSCNYPHFE 64 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rG--h~VT~i~~~~~~~~~~~~~~i~ 64 (176)
+|+++-..+-|.+.-+..+.+.|.++. .+|++++........+..+.|+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id 51 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVD 51 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccC
Confidence 578888888899999999999999974 8999999986654444445554
No 198
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=42.42 E-value=59 Score=24.74 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=24.6
Q ss_pred CCccEEEe-cC-cchhHHHHHhhcCCCeEEEecc
Q 030502 118 DSFACLIT-DA-AWFIAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 118 ~~~d~vI~-D~-~~~~~~~vA~~lgiP~v~f~~~ 149 (176)
.++|+|+. +. ..+.+..+|.++|+|.+..--.
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 37899987 33 4467789999999999987543
No 199
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.41 E-value=99 Score=24.48 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=26.9
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 22 LPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 22 ~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
--+.|--.=..+++..+...||+|++++++..
T Consensus 36 d~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T 67 (235)
T COG2874 36 DNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT 67 (235)
T ss_pred CCCccHHHHHHHHHHHHHhCCceEEEEEechh
Confidence 34557778888999999999999999999853
No 200
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.29 E-value=32 Score=25.22 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=25.9
Q ss_pred CCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 11 PRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 11 ~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.-+..+|+++... . .....++.|.+.|++||++..+
T Consensus 10 ~l~~~~vlVvGGG---~--va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGG---K--IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCC---H--HHHHHHHHHHhCCCEEEEEcCc
Confidence 3445677777533 2 3478899999999999999543
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=42.24 E-value=74 Score=26.55 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=34.3
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
.-|+++..+|.|=..-...|+..|..+|+.|.+++++.+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 357788899999999999999999999999999887744
No 202
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=42.17 E-value=48 Score=26.26 Aligned_cols=28 Identities=11% Similarity=-0.143 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 25 QGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 25 ~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.|--.-+.+|+++|+++||+|++++...
T Consensus 15 gG~~~~~~~l~~~L~~~~~~v~~~~~~~ 42 (365)
T cd03809 15 TGIGRYARELLRALLKLDPEEVLLLLPG 42 (365)
T ss_pred CcHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 4555678999999999999999998764
No 203
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=42.10 E-value=49 Score=28.29 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
.++|++|.+.. ...+|+++|+|.+.+
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 47999999875 578999999999864
No 204
>PRK06849 hypothetical protein; Provisional
Probab=41.87 E-value=73 Score=26.69 Aligned_cols=35 Identities=11% Similarity=0.324 Sum_probs=26.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+.+|++.. |-....+++++.|.++||+|.++....
T Consensus 4 ~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITG----ARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45677664 333368999999999999999987653
No 205
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.86 E-value=45 Score=23.78 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=31.6
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCC-EEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGF-SITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh-~VT~i~~~ 51 (176)
+++++.++....+|.--+-++.++|.++|. ++.++...
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 678888888888999999999999999987 56666653
No 206
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=41.51 E-value=78 Score=27.28 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=33.9
Q ss_pred CCceEEEec-CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 13 NRRRVILFP-LPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 13 ~~~~Il~vp-~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
..+.|+++| ..+.||-.=++.++.+++++|+++.+++...
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 356788888 4677898889999999999999999998754
No 207
>PLN02939 transferase, transferring glycosyl groups
Probab=41.39 E-value=60 Score=31.18 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=30.8
Q ss_pred CCCceEEEecC---CC--CCCh-HHHHHHHHHHHhCCCEEEEEeCC
Q 030502 12 RNRRRVILFPL---PF--QGHI-NPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 12 ~~~~~Il~vp~---p~--~GH~-~P~l~La~~La~rGh~VT~i~~~ 51 (176)
....||++++. |. .|-+ .-.-.|.++|+.+||+|.++++.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~ 524 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPK 524 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 34679998863 33 2333 67789999999999999999984
No 208
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.39 E-value=71 Score=27.73 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=36.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
...|+++...|.|=..-+..||..|..+|..|.+++++.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 35788899999999999999999999999999999987654
No 209
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=41.20 E-value=37 Score=29.73 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=28.4
Q ss_pred CceEEEecCCCCC-----ChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQG-----HINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~G-----H~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
..+|+++| ++| -.....+|++.|.+||.+|.|...+-
T Consensus 307 A~~VvIVP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 348 (463)
T PF02233_consen 307 AKKVVIVP--GYGMAVAQAQHAVAELADLLEERGVEVKFAIHPV 348 (463)
T ss_dssp -SEEEEEE--SHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred cCceEEec--CchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 45788888 554 34899999999999999999998874
No 210
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=41.19 E-value=52 Score=28.15 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=21.4
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
.+||++|.+.. ...+|+++|+|.+.+
T Consensus 369 ~~pdliig~~~---~~~~a~~~gip~~~~ 394 (430)
T cd01981 369 TEPELIFGTQM---ERHIGKRLDIPCAVI 394 (430)
T ss_pred hCCCEEEecch---hhHHHHHcCCCEEEE
Confidence 47999999874 556799999999876
No 211
>PRK00784 cobyric acid synthase; Provisional
Probab=40.68 E-value=90 Score=27.32 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=26.5
Q ss_pred EEEec-CCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 17 VILFP-LPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 17 Il~vp-~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
+.+.. -.+.|=..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 44443 35568899999999999999999887644
No 212
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=40.58 E-value=45 Score=26.99 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=32.6
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
...|.+...|+.|--.-.-.|++.|.++|++|-++..+..++
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 446778889999999999999999999999999999875443
No 213
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=40.53 E-value=50 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCccEEEecCcchhH----------HHHHhhcCCCeEEEe
Q 030502 118 DSFACLITDAAWFIA----------HSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~----------~~vA~~lgiP~v~f~ 147 (176)
-++|++|+-+.+..+ ..|.+++|||.++-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 75 KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 389999998866432 246678999999865
No 214
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=40.43 E-value=49 Score=28.60 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=22.6
Q ss_pred CCccEEEecCcchhH----------HHHHhhcCCCeEEEe
Q 030502 118 DSFACLITDAAWFIA----------HSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~----------~~vA~~lgiP~v~f~ 147 (176)
-++|++|+-+.+..+ ..|.+++|||.++-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 75 ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 389999998866432 246678999999865
No 215
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=40.25 E-value=1e+02 Score=24.36 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=33.4
Q ss_pred EEEecC-CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCC
Q 030502 17 VILFPL-PFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN 56 (176)
Q Consensus 17 Il~vp~-p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~ 56 (176)
|.++.. .|.|=..-.+.||.+|+++|-.|+++=++.+.+.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 455554 6679999999999999999999999999877653
No 216
>PRK10867 signal recognition particle protein; Provisional
Probab=40.23 E-value=56 Score=28.30 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=35.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLNSP 55 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r-Gh~VT~i~~~~~~~ 55 (176)
-|+++..+|.|=......||..|+.+ |..|.++..+.+.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 46677789999999999999999999 99999999986654
No 217
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=40.03 E-value=39 Score=27.80 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=28.1
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.+.+|+++-....| +..|..|+++|++|+++-...
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 36688888855556 889999999999999987654
No 218
>PRK05920 aromatic acid decarboxylase; Validated
Probab=40.02 E-value=44 Score=25.84 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=29.3
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+.||++.- .|.+...=..++.++|.+.|++|.++.+..
T Consensus 3 ~krIllgI-TGsiaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAI-TGASGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEE-eCHHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 45665443 445556788999999999999999999875
No 219
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=39.96 E-value=67 Score=23.85 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=30.4
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+.++.+-..|=..-+.+|.++|..||++|.++-..
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 55777888899999999999999999999988654
No 220
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=39.92 E-value=46 Score=27.30 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=26.8
Q ss_pred EEEec--CCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFP--LPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp--~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|+++. ..+.|=-.-.+++++.|.+.||+|++++..
T Consensus 2 i~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~ 38 (372)
T cd03792 2 VLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIK 38 (372)
T ss_pred eEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecC
Confidence 44443 244466678889999999999999999864
No 221
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=39.91 E-value=45 Score=32.16 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=27.3
Q ss_pred CCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 11 PRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 11 ~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+.+..+|+++...- --+..|..|+.+||+||++=..
T Consensus 380 ~~tgKKVaVVGaGP-----AGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 380 EPTNYNILVTGLGP-----AGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCCeEEEECcCH-----HHHHHHHHHHhCCCeEEEEccc
Confidence 34567899887432 2488999999999999999653
No 222
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.83 E-value=77 Score=22.78 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=33.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+++|++-..-+-+|-.=-.-++..|.++|++|......-
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v 39 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLS 39 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCC
Confidence 357888888888999999888999999999999988764
No 223
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.50 E-value=28 Score=27.11 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 030502 31 MLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~ 52 (176)
-..+|+.|.++||+|+.+-.+.
T Consensus 12 G~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 12 GRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHHhCCCceEEEEcCH
Confidence 4689999999999999997764
No 224
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.30 E-value=53 Score=27.98 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=24.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..+++++ |.|. --+.+|+.|+++|++|+++-..
T Consensus 5 ~k~v~ii---G~g~--~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVV---GAGV--SGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEE---CCCH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4456555 3455 3459999999999999998664
No 225
>PRK12342 hypothetical protein; Provisional
Probab=39.10 E-value=63 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=23.1
Q ss_pred CccEEEecCcch-----h-HHHHHhhcCCCeEEEec
Q 030502 119 SFACLITDAAWF-----I-AHSVANDFRLPTIVLLT 148 (176)
Q Consensus 119 ~~d~vI~D~~~~-----~-~~~vA~~lgiP~v~f~~ 148 (176)
.||+|++-.-.. - +..+|+.||+|.+.+..
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 599999854332 1 57999999999998754
No 226
>PRK06197 short chain dehydrogenase; Provisional
Probab=38.78 E-value=1.1e+02 Score=24.41 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=26.9
Q ss_pred CCCCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 9 KLPRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 9 ~~~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.++..+.+.++++... | ---.++++.|+++|++|.++.-
T Consensus 10 ~~~~~~~k~vlItGas-~--gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 10 DIPDQSGRVAVVTGAN-T--GLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred ccccCCCCEEEEcCCC-C--cHHHHHHHHHHHCCCEEEEEeC
Confidence 3444455677777433 3 2367899999999999877654
No 227
>PRK13236 nitrogenase reductase; Reviewed
Probab=38.78 E-value=77 Score=25.64 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=31.6
Q ss_pred CCCceEE-EecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 12 RNRRRVI-LFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 12 ~~~~~Il-~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.++.+++ |..=.|.|=.+....||..|+++|++|-++=.+.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 3444544 4444677889999999999999999999996654
No 228
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=38.73 E-value=2e+02 Score=22.86 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=25.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+.+|+++..-.- ...|++.|.++|+.|++.+.....
T Consensus 2 ~~~IlvlgGT~e-----gr~la~~L~~~g~~v~~Svat~~g 37 (248)
T PRK08057 2 MPRILLLGGTSE-----ARALARALAAAGVDIVLSLAGRTG 37 (248)
T ss_pred CceEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCC
Confidence 346666663333 357899999999998887766543
No 229
>PLN02293 adenine phosphoribosyltransferase
Probab=38.61 E-value=86 Score=23.75 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=22.6
Q ss_pred CCccEEEe-cC-cchhHHHHHhhcCCCeEEEe
Q 030502 118 DSFACLIT-DA-AWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~-D~-~~~~~~~vA~~lgiP~v~f~ 147 (176)
.++|+|+. |. ..+++..+|..+|+|.+..-
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 36888887 43 44577899999999987643
No 230
>PRK07576 short chain dehydrogenase; Provisional
Probab=38.34 E-value=1e+02 Score=23.98 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEeC
Q 030502 29 NPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~ 50 (176)
---..++++|+++||+|..+.-
T Consensus 20 gIG~~la~~l~~~G~~V~~~~r 41 (264)
T PRK07576 20 GINLGIAQAFARAGANVAVASR 41 (264)
T ss_pred hHHHHHHHHHHHCCCEEEEEeC
Confidence 3467899999999999888754
No 231
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.29 E-value=36 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcC
Q 030502 31 MLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~ 69 (176)
-..++++|.++||+|+.++-..... ...++++.+..+
T Consensus 11 G~~l~~~L~~~~~~V~~~~R~~~~~--~~~~~~~~~~~d 47 (183)
T PF13460_consen 11 GRALAKQLLRRGHEVTALVRSPSKA--EDSPGVEIIQGD 47 (183)
T ss_dssp HHHHHHHHHHTTSEEEEEESSGGGH--HHCTTEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEecCchhc--ccccccccceee
Confidence 4679999999999999998654321 113677777665
No 232
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=38.17 E-value=60 Score=27.73 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=22.0
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEEe
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 147 (176)
.++|++|.. ..+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 489999986 346779999999997753
No 233
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.16 E-value=27 Score=30.68 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 29 NPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
..-+.-|++|+++||+||++=+.+.
T Consensus 10 ~AgL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 10 LAGLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred HHHHHHHHHHHhCCCceEEEeccCc
Confidence 3457789999999999999977543
No 234
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=38.04 E-value=68 Score=22.07 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=28.6
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+..+|+++++... +...++.++.|.+.|.+++++...
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 3567888875544 467899999999999999988654
No 235
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=37.95 E-value=29 Score=27.96 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
||+.| +...+.|.+.||++.++.++
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~d 40 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIGG 40 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEec
Confidence 99999 77778889999999887764
No 236
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=37.86 E-value=32 Score=29.12 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.+--|+++.-...|+-+-.-.+|.+||++|+-|.-+-..+
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrD 137 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRD 137 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---S
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCC
Confidence 3456888887888999999999999999999776665543
No 237
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.85 E-value=70 Score=24.93 Aligned_cols=35 Identities=6% Similarity=-0.017 Sum_probs=25.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
+.++++++..+.| .---.++|++|+++|++|.+..
T Consensus 7 ~~k~~lITGas~~-~GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 7 QGKKGLITGIANN-MSISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CCcEEEEECCCCC-cchHHHHHHHHHHcCCEEEEEe
Confidence 3478888866652 1145789999999999988764
No 238
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=37.59 E-value=72 Score=25.58 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=23.0
Q ss_pred CccEEEecCcch------hHHHHHhhcCCCeEEEec
Q 030502 119 SFACLITDAAWF------IAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 119 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~ 148 (176)
.||+|++-.... -+..+|+.||+|++++..
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 599999854332 246899999999998754
No 239
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=37.47 E-value=68 Score=26.42 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=29.6
Q ss_pred CceEEEecC-CCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPL-PFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~-p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..+|+++.. -+.|=+...+.|.++|.+||+++.|+.|.
T Consensus 112 ~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 112 AKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG 150 (301)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S
T ss_pred CCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC
Confidence 346776665 55599999999999999999999999986
No 240
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=37.42 E-value=53 Score=24.96 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=28.2
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHh-CCCEEEEEeCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYS-EGFSITIIHTTL 52 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~-rGh~VT~i~~~~ 52 (176)
.||++.-..+.| ..=..+|+++|.+ .|++|.++.++.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 356655555545 5568999999999 599999999974
No 241
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=37.35 E-value=69 Score=26.86 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=25.6
Q ss_pred CCceEEEecC-CCCCChHHHHHHHHHHHhCCC
Q 030502 13 NRRRVILFPL-PFQGHINPMLQLGSILYSEGF 43 (176)
Q Consensus 13 ~~~~Il~vp~-p~~GH~~P~l~La~~La~rGh 43 (176)
.+.+|++++. -|.||......|.+.|..+|.
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~ 35 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNL 35 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCC
Confidence 4568988884 556999999999999998864
No 242
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=37.34 E-value=34 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=24.4
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..-++++....| --.+.|++||.||.+|.++.-.
T Consensus 49 g~WAVVTGaTDG---IGKayA~eLAkrG~nvvLIsRt 82 (312)
T KOG1014|consen 49 GSWAVVTGATDG---IGKAYARELAKRGFNVVLISRT 82 (312)
T ss_pred CCEEEEECCCCc---chHHHHHHHHHcCCEEEEEeCC
Confidence 356666654443 2478999999999998887653
No 243
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=37.28 E-value=50 Score=21.13 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCccEEEecCcc--hhHHHHHhhcCCCeEEEec
Q 030502 118 DSFACLITDAAW--FIAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 118 ~~~d~vI~D~~~--~~~~~vA~~lgiP~v~f~~ 148 (176)
.+..-||++.-. ..+..+|+++|||.++-..
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 467788887644 3567999999999998643
No 244
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=37.19 E-value=2.1e+02 Score=23.67 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhcCCCCCCCCccEEEecCcch--hHHHHHhhcCCCeEEEecccHHHHH
Q 030502 99 VPFRDCLANKLMSNSQESKDSFACLITDAAWF--IAHSVANDFRLPTIVLLTDSIAASL 155 (176)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~~~~ 155 (176)
+.-++.++++.+. ..|.+|+++-+.. +...+|++.++|.+...-.+....+
T Consensus 69 e~~~~~~~~~~~~------~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~~~~ 121 (304)
T TIGR00679 69 EEQKQIIHNLLTL------NPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTELSF 121 (304)
T ss_pred HHHHHHHHHHhCC------CCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHHHHH
Confidence 3445556676553 4788888877664 4579999999999986555544333
No 245
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.18 E-value=63 Score=23.71 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=21.1
Q ss_pred CCccEEEecCcchh--HHHHHhhcCCCeEEEec
Q 030502 118 DSFACLITDAAWFI--AHSVANDFRLPTIVLLT 148 (176)
Q Consensus 118 ~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~ 148 (176)
-+||+||....... ....-++.|||++.+..
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 38999998643322 33445789999988753
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=37.13 E-value=79 Score=26.28 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=34.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
...++++..+|.|=..=...+|++|..+|+.|.|++...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 356888888999988888999999999999999998754
No 247
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=36.95 E-value=71 Score=22.53 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=27.4
Q ss_pred EEEec-CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 17 VILFP-LPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 17 Il~vp-~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
|.|+. .++.|=..-...||+.|+++|++|-++-.+...
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 34444 567788899999999999999998777766443
No 248
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=36.85 E-value=37 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 030502 32 LQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 32 l~La~~La~rGh~VT~i~~~~ 52 (176)
.-+|..|+++||+|+++....
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHCCCceEEEEccc
Confidence 457889999999999999865
No 249
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=36.83 E-value=77 Score=24.96 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=29.2
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
|.++...+.|=..-+..|+++|..+|++|.++-
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 566777888999999999999999999999984
No 250
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=36.83 E-value=44 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=26.1
Q ss_pred CCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 11 PRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 11 ~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.-+..+|+++..... ....++.|.++|++||++...
T Consensus 7 ~l~~k~vLVIGgG~v-----a~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKV-----AGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHH-----HHHHHHHHHHCCCeEEEEcCC
Confidence 344567887764332 367889999999999999764
No 251
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=36.76 E-value=57 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=23.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+|.|+-....| ..+|+.|.++||+|+++.-.
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 45666554444 47899999999999999865
No 252
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=36.36 E-value=96 Score=21.00 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=26.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 23 PFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
...|.-..+.+..+.+.++|..|..+|.....
T Consensus 61 s~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp ESSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred eccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 36789999999999999999999888776443
No 253
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=36.24 E-value=52 Score=28.28 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=27.4
Q ss_pred CCCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 10 LPRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 10 ~~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.+.+..+|+++..... -+..|..|+.+||+||++-..
T Consensus 136 ~~~~~~~VvIIGgGpa-----Gl~aA~~l~~~g~~V~lie~~ 172 (457)
T PRK11749 136 APKTGKKVAVIGAGPA-----GLTAAHRLARKGYDVTIFEAR 172 (457)
T ss_pred CccCCCcEEEECCCHH-----HHHHHHHHHhCCCeEEEEccC
Confidence 3445668888874332 378899999999999998643
No 254
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=36.16 E-value=47 Score=28.78 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 27 HINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 27 H~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
|+..|...+.+|.++|++|++...+.+
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~~ 77 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADDN 77 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCCc
Confidence 467899999999999999999998773
No 255
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=36.15 E-value=69 Score=24.13 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=23.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITII 48 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i 48 (176)
.+-|++++ -..|--.-+..+|+.|+++|+.|.+.
T Consensus 14 ~~~Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 14 RPAVVVIH-DIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp EEEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred CCEEEEEc-CCCCCchHHHHHHHHHHhcCCCEEec
Confidence 34466665 55677788889999999999765543
No 256
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=35.90 E-value=71 Score=24.91 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=30.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
+.+|-+=..||.|-..-|++=|++|.++|.+|.+-..+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4577777889999999999999999999999988666543
No 257
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=35.87 E-value=49 Score=26.38 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=22.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+|+++.....| ..+|..|+++||+|+++...
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 46666544433 56888899999999999863
No 258
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=35.86 E-value=43 Score=26.86 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
||+.+++ ..+.|.+.||++.++.++.
T Consensus 17 G~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 17 GHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred HHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 9999976 6778888899999988864
No 259
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=35.80 E-value=56 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=32.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
..+++++..||.|-..-+..+++.+...+..+.++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 468899999999999999999999999875566665543
No 260
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.77 E-value=77 Score=24.92 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=30.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.|++..=.|.|-..-...||..|+.+|++|-++=.+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 356666678899999999999999999999888655
No 261
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=35.70 E-value=1.9e+02 Score=21.84 Aligned_cols=56 Identities=7% Similarity=0.100 Sum_probs=41.9
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC-CC-----CCCCCCceEEEcC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PN-----SCNYPHFEFCSFS 69 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~-~~-----~~~~~~i~~~~l~ 69 (176)
+.-|-+++..+.|=....+.+|-+-+.+|.+|.++---.-. .. ....+++++....
T Consensus 21 ~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g 82 (178)
T PRK07414 21 EGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCD 82 (178)
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECC
Confidence 66788999999999999999999999999999988653211 11 1123577777766
No 262
>PRK04940 hypothetical protein; Provisional
Probab=35.67 E-value=1.1e+02 Score=23.30 Aligned_cols=32 Identities=3% Similarity=-0.032 Sum_probs=25.3
Q ss_pred CccEEEecCcc-hhHHHHHhhcCCCeEEEeccc
Q 030502 119 SFACLITDAAW-FIAHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 119 ~~d~vI~D~~~-~~~~~vA~~lgiP~v~f~~~~ 150 (176)
...++|--.+- .|+.-+|+++|+|.|.+.|.-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 35677776655 588999999999999998754
No 263
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=35.59 E-value=58 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=23.8
Q ss_pred CCCChHH-HHHHHHHHHh-CCCEEEEEeCCC
Q 030502 24 FQGHINP-MLQLGSILYS-EGFSITIIHTTL 52 (176)
Q Consensus 24 ~~GH~~P-~l~La~~La~-rGh~VT~i~~~~ 52 (176)
+.||... ..++.++|++ +|++|.++.++.
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~ 38 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKA 38 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHh
Confidence 3478866 8899999985 699999999874
No 264
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=35.43 E-value=86 Score=25.13 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=23.8
Q ss_pred CccEEEe-cCcch-hHHHHHhhcCCCeEEEeccc
Q 030502 119 SFACLIT-DAAWF-IAHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 119 ~~d~vI~-D~~~~-~~~~vA~~lgiP~v~f~~~~ 150 (176)
-||++++ |.-.- -+..=|+++|||+|.+.=+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 4777655 87653 56778899999999986543
No 265
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=35.36 E-value=97 Score=24.78 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCccEEEecCcch--hHHHHHhhcCCCeEEEecc
Q 030502 100 PFRDCLANKLMSNSQESKDSFACLITDAAWF--IAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 100 ~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~ 149 (176)
.+.++++.+++ .++.||+++.... .+..+|++.|++.+.+.+.
T Consensus 208 ~l~~l~~~ik~-------~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 208 QLAELVEFVKK-------SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHH-------cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 35566666655 5799999998775 3468999999999887653
No 266
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=35.21 E-value=45 Score=28.64 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
||+.|++. .+.|++.||++.++.++
T Consensus 50 Ghlv~l~~-l~~lq~~G~~~~~ligd 74 (410)
T PRK13354 50 GHLVPLMK-LKRFQDAGHRPVILIGG 74 (410)
T ss_pred hhHHHHHH-HHHHHHcCCeEEEEEcc
Confidence 99999665 56889999999998864
No 267
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=35.11 E-value=41 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=25.9
Q ss_pred ceEEEecCCCC--CChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQ--GHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~--GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+|+++..++- |. -+.+||+|+++|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 57888876654 33 46789999999999999984
No 268
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=34.90 E-value=1.3e+02 Score=21.97 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHHh-CCCEEEEEe
Q 030502 27 HINPMLQLGSILYS-EGFSITIIH 49 (176)
Q Consensus 27 H~~P~l~La~~La~-rGh~VT~i~ 49 (176)
|......|.++|.. +|.++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 77788899999988 554444443
No 269
>PRK03094 hypothetical protein; Provisional
Probab=34.83 E-value=39 Score=22.14 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 030502 31 MLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~ 51 (176)
+..+.+.|.++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 456889999999999866543
No 270
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=34.80 E-value=50 Score=27.00 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=24.5
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.||+++.....| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 468877655544 46788999999999998753
No 271
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=34.70 E-value=63 Score=25.30 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCCCCCccEEEecCcchh--HHHHHhhcCCCeEEEecc
Q 030502 101 FRDCLANKLMSNSQESKDSFACLITDAAWFI--AHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 149 (176)
+.++.+.+++ .+..||+++..... +..+|++.|+|.+.+.+.
T Consensus 188 l~~l~~~ik~-------~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 188 LAELIKLIKE-------NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHH-------TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHhhh-------cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 4555555655 58999999986654 468899999999888766
No 272
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=34.69 E-value=78 Score=27.92 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=21.6
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
.+||+||.+. +...+|+++|+|.+.+
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 4799999987 4677899999999865
No 273
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.57 E-value=85 Score=21.34 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=30.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCC-EEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGF-SITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh-~VT~i~~~ 51 (176)
+++++.+..-...|.....++++.|.+++. ++.++...
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 667888887778889999999999999887 77766654
No 274
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=34.48 E-value=51 Score=28.10 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=29.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
..||++.-. |.+...-..++.+.|.++|++|.++.++.
T Consensus 3 ~k~IllgiT-GSiaa~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 3 NKKILLGVT-GGIAAYKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCEEEEEEe-CHHHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 346665543 45556668999999999999999998864
No 275
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=34.47 E-value=42 Score=26.17 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCEEEEEeC
Q 030502 30 PMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~ 50 (176)
--..+|++|+++|++|+++..
T Consensus 27 IG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 27 LGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcC
Confidence 357889999999999999863
No 276
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=34.37 E-value=85 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.9
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 24 FQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 24 ~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+.|=..-+..|+++|.++|++|.+.||..
T Consensus 7 ~gGKTtl~~~l~~~~~~~g~~v~~TTTT~ 35 (232)
T TIGR03172 7 AGGKTSTMFWLAAEYRKEGYRVLVTTTTR 35 (232)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 36888999999999999999999998864
No 277
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=34.30 E-value=34 Score=27.08 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCEEEEEeCC
Q 030502 33 QLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 33 ~La~~La~rGh~VT~i~~~ 51 (176)
-+|..|++.||+||++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999875
No 278
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=34.27 E-value=1e+02 Score=25.26 Aligned_cols=111 Identities=9% Similarity=0.050 Sum_probs=57.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCCCCCCCCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLN 94 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r-Gh~VT~i~~~~~~~~~~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~ 94 (176)
+|+++. ....++.=+..+.++|.++ +.++.++.|........ .-.+...++ ....-... ....+........
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~--~~~~~~~i~-~~~~~~~~--~~~~~~~~~~~~~- 74 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLD--QVLDLFHLP-PDYDLNIM--SPGQTLGEITSNM- 74 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHH--HHHHhcCCC-CCeeeecC--CCCCCHHHHHHHH-
Confidence 566555 5678899999999999986 66777766654321100 000000000 00000000 0011222111111
Q ss_pred HhcchHHHHHHHHHhhcCCCCCCCCccEEEe--cCcch-hHHHHHhhcCCCeEEE
Q 030502 95 AKCVVPFRDCLANKLMSNSQESKDSFACLIT--DAAWF-IAHSVANDFRLPTIVL 146 (176)
Q Consensus 95 ~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~--D~~~~-~~~~vA~~lgiP~v~f 146 (176)
...+.+++++ .+||+|++ |.... ++...|..+|||++..
T Consensus 75 ---~~~l~~~l~~----------~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 75 ---LEGLEELLLE----------EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred ---HHHHHHHHHH----------cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 1334445544 37899998 55443 4578889999999865
No 279
>PRK00889 adenylylsulfate kinase; Provisional
Probab=34.21 E-value=97 Score=22.53 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=31.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
-|+++..||.|=..-...|++.|...|.++.++..+
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 467788899999999999999999999999888665
No 280
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=34.11 E-value=99 Score=25.52 Aligned_cols=40 Identities=8% Similarity=0.049 Sum_probs=34.8
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
.-|+++..+|.|=..-...||..|+.+|.+|.++..+.+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3577888899999999999999999999999999887543
No 281
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.95 E-value=69 Score=28.32 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=21.8
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEEe
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 147 (176)
.+||+||.+. +...+|+++|||.+...
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3799999987 46667999999997654
No 282
>PLN02253 xanthoxin dehydrogenase
Probab=33.95 E-value=1.1e+02 Score=23.94 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=23.8
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+.++++. +.|.+ -..++++|+++|++|.++..
T Consensus 18 ~k~~lItG-as~gI--G~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 18 GKVALVTG-GATGI--GESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CCEEEEEC-CCchH--HHHHHHHHHHcCCEEEEEeC
Confidence 45666663 33433 67899999999999988754
No 283
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=33.92 E-value=91 Score=22.57 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=27.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 22 LPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 22 ~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
-+|.|=..-...||..|+++|++|.++=.+.
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4777999999999999999999999986653
No 284
>PRK06526 transposase; Provisional
Probab=33.81 E-value=52 Score=26.17 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=31.3
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..+++++..||.|=..-...++.++..+|+.|.|++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~ 135 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH
Confidence 45788888899998888899999999999988776543
No 285
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=33.76 E-value=1e+02 Score=25.61 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 11 PRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 11 ~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
..++.+|++.. +.|. --..|++.|.++||+|+.+.-
T Consensus 18 ~~~~~~IlVtG--gtGf--IG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICITG--AGGF--IASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCEEEEEC--CccH--HHHHHHHHHHhCCCEEEEEEe
Confidence 34466777664 3343 567899999999999998864
No 286
>PRK08181 transposase; Validated
Probab=33.67 E-value=89 Score=25.16 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=31.8
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..+++++..+|.|=..=...++.++..+|+.|.|++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 45688888888888888888999999999999888764
No 287
>PRK04148 hypothetical protein; Provisional
Probab=33.62 E-value=46 Score=23.97 Aligned_cols=32 Identities=13% Similarity=0.358 Sum_probs=22.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..+|+.+... .| ..+|+.|++.||+|+.+=..
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 3567777654 33 35788899999999887544
No 288
>PRK05541 adenylylsulfate kinase; Provisional
Probab=33.60 E-value=1.3e+02 Score=21.84 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=29.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
-|++...+|.|=-.....|++.|..+|..+.++..
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 67888899999999999999999888877766643
No 289
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=33.54 E-value=1e+02 Score=23.87 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEec
Q 030502 101 FRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 148 (176)
++.+++.+++..- ...+-+||+|-=...+...|+++|||+..+-.
T Consensus 13 ~~al~~~~~~~~l---~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 13 FRAIHDACLDGRV---NGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred HHHHHHHHHcCCC---CeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4555555543210 13678899986444568899999999987643
No 290
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=33.54 E-value=55 Score=25.43 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=21.8
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
..-+++|.-|.||= +..|+++||+|+=+=
T Consensus 38 ~~rvLvPgCG~g~D------~~~La~~G~~VvGvD 66 (218)
T PF05724_consen 38 GGRVLVPGCGKGYD------MLWLAEQGHDVVGVD 66 (218)
T ss_dssp SEEEEETTTTTSCH------HHHHHHTTEEEEEEE
T ss_pred CCeEEEeCCCChHH------HHHHHHCCCeEEEEe
Confidence 33466899999986 566789999987653
No 291
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=33.33 E-value=24 Score=22.40 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 030502 31 MLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~ 50 (176)
=-+|...|.++|++||=.|.
T Consensus 22 Q~eL~~~L~~~Gi~vTQaTi 41 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQATI 41 (70)
T ss_dssp HHHHHHHHHHTT-T--HHHH
T ss_pred HHHHHHHHHHcCCCcchhHH
Confidence 35799999999999876654
No 292
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.21 E-value=1.1e+02 Score=20.13 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=24.5
Q ss_pred CccEEE--ecCcchh----HHHHHhhcCCCeEEEecccHH
Q 030502 119 SFACLI--TDAAWFI----AHSVANDFRLPTIVLLTDSIA 152 (176)
Q Consensus 119 ~~d~vI--~D~~~~~----~~~vA~~lgiP~v~f~~~~a~ 152 (176)
+.|+|| +|+.... +...|++.|+|++..-..+..
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 567774 5776532 358889999999998766654
No 293
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=33.17 E-value=1.1e+02 Score=25.75 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=33.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..-|.++..++.|=..-+..|.++|.++|++|.++-..
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~ 242 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS 242 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 44577888899999999999999999999999888753
No 294
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=33.13 E-value=75 Score=24.87 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=24.9
Q ss_pred CCCCCh-HHHHHHHHHHHhC--CCEEEEEeCCC
Q 030502 23 PFQGHI-NPMLQLGSILYSE--GFSITIIHTTL 52 (176)
Q Consensus 23 p~~GH~-~P~l~La~~La~r--Gh~VT~i~~~~ 52 (176)
.|.|+. .=..+|.+.|.++ |++|.++.++.
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 455566 6889999999999 99999999874
No 295
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=33.12 E-value=1e+02 Score=24.98 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=32.0
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+|++..=+|.|=......||..|+++|++|-++=.+.
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4777777888999999999999999999998886654
No 296
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=33.12 E-value=66 Score=25.02 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=27.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+.||++.-..+.+ ..=..+|.+.|. +|++|.++.|+.-.
T Consensus 19 ~k~IllgVtGSIA-Ayk~~~lvr~L~-~g~~V~VvmT~~A~ 57 (209)
T PLN02496 19 KPRILLAASGSVA-AIKFGNLCHCFS-EWAEVRAVVTKASL 57 (209)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHhc-CCCeEEEEEChhHh
Confidence 5577766544433 344467999998 59999999997544
No 297
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=33.11 E-value=1e+02 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=22.9
Q ss_pred CCccEEEe--cCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLIT--DAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~--D~~~~~~~~vA~~lgiP~v~f 146 (176)
..+|+|++ .-..+.+..+|..+|+|.++.
T Consensus 110 ~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 110 LRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred CCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 36899987 235567889999999999874
No 298
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.10 E-value=92 Score=24.53 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=25.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
+.++++++..+.++ ---..+|++|+++|++|.++.
T Consensus 6 ~~k~~lVTGas~~~-GIG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 6 QGKRGLIMGVANDH-SIAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CCCEEEEeCCCCCC-cHHHHHHHHHHhCCCEEEEec
Confidence 34778888655311 147899999999999998864
No 299
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=33.05 E-value=42 Score=21.97 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 030502 31 MLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~ 52 (176)
+-.+.+.|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578899999999998887654
No 300
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.05 E-value=79 Score=23.94 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=22.5
Q ss_pred cEEEecCcc-hhHHHHHhhcCCCeEEEeccc
Q 030502 121 ACLITDAAW-FIAHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 121 d~vI~D~~~-~~~~~vA~~lgiP~v~f~~~~ 150 (176)
.++|-..+- .++..+|+++|+|.|.+.|.-
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 566665554 467889999999998887653
No 301
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.98 E-value=47 Score=25.91 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCC
Q 030502 31 MLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~~ 53 (176)
-..|+++|+..||+|++.+....
T Consensus 13 G~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 13 GSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred HHHHHHHHHhCCCeEEEecCCCh
Confidence 46799999999999999987654
No 302
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.92 E-value=30 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=22.4
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 21 PLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 21 p~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
-+||+|+++=-.+|++.+.++| ++|+.+.
T Consensus 78 i~pGyg~lse~~~fa~~~~~~g--i~fiGp~ 106 (110)
T PF00289_consen 78 IHPGYGFLSENAEFAEACEDAG--IIFIGPS 106 (110)
T ss_dssp EESTSSTTTTHHHHHHHHHHTT---EESSS-
T ss_pred cccccchhHHHHHHHHHHHHCC--CEEECcC
Confidence 3579999999999999999887 5666553
No 303
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=32.46 E-value=1.3e+02 Score=20.73 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=33.6
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+++++..++.|--.-...++..++.+|..|.++..+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 467788899999999999999999999999999887543
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.36 E-value=1.4e+02 Score=25.73 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=34.6
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
..-++++...|.|=...+..||..+..+|++|.+++.+.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 334566777788999999999999999999999999986643
No 305
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=32.34 E-value=95 Score=26.87 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=34.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILY-SEGFSITIIHTTLNSP 55 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La-~rGh~VT~i~~~~~~~ 55 (176)
-++++..+|.|=......||..|. .+|..|.++..+.+.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 466777899999999999999998 5899999999986553
No 306
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=32.30 E-value=95 Score=25.11 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=23.5
Q ss_pred CCccEEEec-C-cchhHHHHHhhcCCCeEEEe
Q 030502 118 DSFACLITD-A-AWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~D-~-~~~~~~~vA~~lgiP~v~f~ 147 (176)
.++|+|++= . ..+.+..+|.++|+|.+..-
T Consensus 127 ~~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 127 REIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred CCCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 479999983 3 44667899999999998863
No 307
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=32.28 E-value=1.1e+02 Score=26.20 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 10 LPRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 10 ~~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.+.+..+|+++... ..-+..|..|+.+||+||++-..
T Consensus 129 ~~~~~~~V~IIG~G-----~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 129 APSTHKKVAVIGAG-----PAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCCCCEEEEECcC-----HHHHHHHHHHHHCCCcEEEEecC
Confidence 34556788888743 34568899999999999999754
No 308
>PRK08939 primosomal protein DnaI; Reviewed
Probab=32.28 E-value=1e+02 Score=25.31 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=33.2
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
...+.+...+|.|=..=+..+|.+|+.+|+.|+|+..+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~ 194 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE 194 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH
Confidence 346888888999999999999999999999999887653
No 309
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=32.20 E-value=49 Score=26.74 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
||+.+.+...+.|.+.||++.++..+.
T Consensus 15 G~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 15 GHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 999998889999999999999998875
No 310
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=32.16 E-value=1.5e+02 Score=24.78 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
...|.+...||.|=..-.-.|++.|.++|++|.++..+...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 33577888999999999999999999999999999987543
No 311
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=32.14 E-value=89 Score=23.48 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=23.8
Q ss_pred eEEEecCCC----CCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 16 RVILFPLPF----QGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 16 ~Il~vp~p~----~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
+|.++.... ..+..-..+|++.|+++||.+.+=.
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GG 39 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGG 39 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECC
Confidence 466665432 3456788899999999998776544
No 312
>PRK13604 luxD acyl transferase; Provisional
Probab=32.08 E-value=1.2e+02 Score=24.95 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=24.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITII 48 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i 48 (176)
..+++.-...++..-+..+|+.|+++|+.|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 344444455566666999999999999987655
No 313
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=31.99 E-value=39 Score=26.24 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcCCCCCCCCccEEEecCcch
Q 030502 101 FRDCLANKLMSNSQESKDSFACLITDAAWF 130 (176)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~ 130 (176)
.+++.+++.. .++||||+||.-.
T Consensus 125 ~~ki~e~lp~-------r~VdvVlSDMapn 147 (232)
T KOG4589|consen 125 YRKIFEALPN-------RPVDVVLSDMAPN 147 (232)
T ss_pred HHHHHHhCCC-------CcccEEEeccCCC
Confidence 3455555533 6899999998753
No 314
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.93 E-value=91 Score=26.01 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=0.0
Q ss_pred CCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 11 PRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 11 ~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
+..+.||++.+ |----.+.+|.+++.+|++||+.+
T Consensus 30 ~k~~~hi~itg----gS~glgl~la~e~~~~ga~Vti~a 64 (331)
T KOG1210|consen 30 PKPRRHILITG----GSSGLGLALALECKREGADVTITA 64 (331)
T ss_pred cCccceEEEec----CcchhhHHHHHHHHHccCceEEEe
No 315
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=31.91 E-value=96 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=21.8
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
.++|++|.+.. ...+|+++|||.+..
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 47999999865 578999999999865
No 316
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.85 E-value=48 Score=21.85 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCCEEE
Q 030502 31 MLQLGSILYSEGFSIT 46 (176)
Q Consensus 31 ~l~La~~La~rGh~VT 46 (176)
++++|++|++.||++.
T Consensus 2 ~~~~a~~l~~lG~~i~ 17 (95)
T PF02142_consen 2 IVPLAKRLAELGFEIY 17 (95)
T ss_dssp HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCEEE
Confidence 5789999999997654
No 317
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=31.83 E-value=1.2e+02 Score=23.34 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 030502 31 MLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~ 50 (176)
-..+++.|+++|++|+++..
T Consensus 25 G~~la~~l~~~G~~V~~~~r 44 (259)
T PRK08213 25 GLQIAEALGEAGARVVLSAR 44 (259)
T ss_pred HHHHHHHHHHcCCEEEEEeC
Confidence 57899999999999877654
No 318
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=31.71 E-value=89 Score=27.64 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=21.2
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
.+||+||.+.. ...+|+++|+|.+.+
T Consensus 361 ~~PdliiG~~~---er~~a~~lgiP~~~i 386 (519)
T PRK02910 361 AAPELVLGTQM---ERHSAKRLGIPCAVI 386 (519)
T ss_pred cCCCEEEEcch---HHHHHHHcCCCEEEe
Confidence 47999998763 667999999998765
No 319
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=31.57 E-value=1.2e+02 Score=24.22 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=29.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
..+++++. +..=+-|++.+++.|+++|.+|+++.....
T Consensus 98 ~~~~llIa--GGiGiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 98 FGTVVCVG--GGVGIAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred CCeEEEEe--CcCcHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 35788877 333489999999999999999998876543
No 320
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.51 E-value=1.4e+02 Score=22.67 Aligned_cols=33 Identities=6% Similarity=0.011 Sum_probs=23.3
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+.+++.. +.| .--..++++|+++|++|+++.-
T Consensus 6 ~k~vlItG-~sg--~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 6 MPRALITG-ASS--GIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCEEEEeC-CCc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 34555552 223 4568899999999999888764
No 321
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.39 E-value=1e+02 Score=26.53 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=20.9
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
.++|++|.... ...+|+++|+|.+.+
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 36888888654 678999999999765
No 322
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=31.38 E-value=1e+02 Score=24.17 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=29.4
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.|+++.=.|.|=..-...||..|+++|++|-++=.+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 356665577788899999999999999999888544
No 323
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.29 E-value=1.1e+02 Score=24.96 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCCccEEEecCcchhHHHHHhhcCCCeEEEe
Q 030502 99 VPFRDCLANKLMSNSQESKDSFACLITDAAWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 147 (176)
..|+.+++..+...- ...+.+||+|- +.+..+|+++|||++.+-
T Consensus 101 ~nl~al~~~~~~~~~---~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGEL---PMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCC---CcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 447788877654310 13678888874 235566999999999863
No 324
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=31.21 E-value=1.7e+02 Score=23.72 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=34.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
...|++...|+.|=..-+..|+..|..+|+.|.++..+...
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 44567777899999999999999999999999998877433
No 325
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=31.09 E-value=65 Score=24.52 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.1
Q ss_pred EEEecCCCCCCh-HHHHHHHHHHHhCCCEEEEEeC
Q 030502 17 VILFPLPFQGHI-NPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 17 Il~vp~p~~GH~-~P~l~La~~La~rGh~VT~i~~ 50 (176)
+++.++|++=|+ .|.-+++..|...|.++..+.-
T Consensus 36 ~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lvL 70 (194)
T TIGR03264 36 VAVAMSPGRRHITKPVCEITYALREAGIQTSVLVL 70 (194)
T ss_pred EEEecCcccccCCCcHHHHHHHHHHcCCccceEEE
Confidence 456668999998 8999999999999988766554
No 326
>PRK09213 pur operon repressor; Provisional
Probab=30.97 E-value=1e+02 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCccEEEe-cC-cchhHHHHHhhcCCCeEEEe
Q 030502 118 DSFACLIT-DA-AWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~-D~-~~~~~~~vA~~lgiP~v~f~ 147 (176)
.++|+|++ +. ..+.+..+|..+|+|.++.-
T Consensus 129 ~~iD~Vvtvet~GIplA~~vA~~L~vp~vivR 160 (271)
T PRK09213 129 KKIDAVMTVETKGIPLAYAVANYLNVPFVIVR 160 (271)
T ss_pred cCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 37999998 33 44677899999999998863
No 327
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=30.95 E-value=1.2e+02 Score=23.88 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhhcCCCCCCCCccEEEecCcchhH---HHHHhhcCCCeEEEecc
Q 030502 99 VPFRDCLANKLMSNSQESKDSFACLITDAAWFIA---HSVANDFRLPTIVLLTD 149 (176)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~~~ 149 (176)
+.+.+.-+++.+ .+.|+|+-|.+-..- ..+++..|+|++.....
T Consensus 165 ~~l~~Aa~~L~~-------~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~l 211 (221)
T PF07302_consen 165 EELAAAARELAE-------QGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTL 211 (221)
T ss_pred HHHHHHHHHHHh-------cCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHH
Confidence 345555566654 489999999866533 47778899999875443
No 328
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=30.82 E-value=54 Score=28.11 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=21.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
||.|+...+.| |-.+|+.|+++|++|+..=
T Consensus 1 ~~~~iGiggsG----m~~la~~L~~~G~~v~~~D 30 (448)
T TIGR01082 1 KIHFVGIGGIG----MSGIAEILLNRGYQVSGSD 30 (448)
T ss_pred CEEEEEECHHH----HHHHHHHHHHCCCeEEEEC
Confidence 35555555544 4459999999999998754
No 329
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=30.72 E-value=53 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 030502 31 MLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~ 52 (176)
-+..|.+|+++|++|+++-...
T Consensus 11 G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 11 GLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCeEEEEeecc
Confidence 4678999999999999998763
No 330
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=30.54 E-value=65 Score=25.40 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 28 INPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 28 ~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+-+.+++.+.|.++|+.|.++|...
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~ 146 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRW 146 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3578899999999999999999865
No 331
>PRK12829 short chain dehydrogenase; Provisional
Probab=30.52 E-value=1.3e+02 Score=23.09 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=22.9
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
..++++.. +.|.+ -..+++.|+++||+|+.+.-
T Consensus 11 ~~~vlItG--a~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 11 GLRVLVTG--GASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CCEEEEeC--CCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 34555443 33444 58889999999999877764
No 332
>PLN02240 UDP-glucose 4-epimerase
Probab=30.44 E-value=1.2e+02 Score=24.47 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=22.4
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
.+|++.. +.|.+ -..|++.|+++||+|+.+.
T Consensus 6 ~~vlItG--atG~i--G~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 6 RTILVTG--GAGYI--GSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CEEEEEC--CCChH--HHHHHHHHHHCCCEEEEEe
Confidence 4555543 44554 5678899999999998885
No 333
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=30.43 E-value=1.2e+02 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=32.0
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+..|.+..=+|.|=..-...||..|+.+|++|-++-.+.
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 345666666777999999999999999999999986553
No 334
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=30.42 E-value=58 Score=22.95 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCCCCCCCccEEEecCcch--hHHHHHhhcCCCeEEEec
Q 030502 102 RDCLANKLMSNSQESKDSFACLITDAAWF--IAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 102 ~~~l~~l~~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~ 148 (176)
++.++++... ..|.+|+++-+.+ +...+|++.|+|....--
T Consensus 71 ~~~l~~l~~~------~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 71 KERLEKLFSY------NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp CCHHHHHCTT------T-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHhCC------CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 3445565543 4788999988764 557999999999987644
No 335
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.41 E-value=1.4e+02 Score=22.67 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=24.4
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
|+|+..++.-|---+.+++++|++.|.+|.+++-..
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 666666666665556677777777777777776543
No 336
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=30.39 E-value=33 Score=26.11 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.0
Q ss_pred CCccEEEe-cCcc-hhHHHHHhhcCCCeEEEeccc
Q 030502 118 DSFACLIT-DAAW-FIAHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 118 ~~~d~vI~-D~~~-~~~~~vA~~lgiP~v~f~~~~ 150 (176)
..||+||. |... ..+..=|.++|||.+.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 47888877 6544 356778899999999987654
No 337
>PLN00198 anthocyanidin reductase; Provisional
Probab=30.25 E-value=1.5e+02 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=24.8
Q ss_pred CCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 11 PRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 11 ~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|..+.+|++.. +.| .--..|+++|.++||+|+.+.-.
T Consensus 6 ~~~~~~vlItG--~~G--fIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 6 PTGKKTACVIG--GTG--FLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCCCCeEEEEC--Cch--HHHHHHHHHHHHCCCEEEEEECC
Confidence 44455666554 334 34567999999999999766543
No 338
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=30.16 E-value=1.6e+02 Score=21.98 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=29.2
Q ss_pred ceEEEec--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 15 RRVILFP--LPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 15 ~~Il~vp--~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.+++.+. -++.|=..-...||..|+.+|++|.++=.+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4544444 3566888999999999999999998886653
No 339
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.13 E-value=41 Score=24.28 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
-.+...+=++.+|.++|++||+..++.
T Consensus 16 ~qissaiYls~klkkkgf~v~VaateA 42 (148)
T COG4081 16 PQISSAIYLSHKLKKKGFDVTVAATEA 42 (148)
T ss_pred ccchHHHHHHHHhhccCccEEEecCHh
Confidence 344556778899999999999998874
No 340
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.97 E-value=76 Score=27.72 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=21.0
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIV 145 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 145 (176)
.++|++|.. .+...+|+++|||++.
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 479999997 5577899999999984
No 341
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.96 E-value=1.2e+02 Score=23.66 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.0
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.|+++.=+|.|=..-...||..|+++|++|-++=.+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4667765777999999999999999999999886653
No 342
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=29.95 E-value=1.3e+02 Score=21.58 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=32.0
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
|.+...++.|=...+..++..|..+|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 567778899999999999999999999999988764
No 343
>PRK10749 lysophospholipase L2; Provisional
Probab=29.90 E-value=1.4e+02 Score=24.22 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=28.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
++-|+++.. ..+|..-+..+++.|+++|++|..+--
T Consensus 54 ~~~vll~HG-~~~~~~~y~~~~~~l~~~g~~v~~~D~ 89 (330)
T PRK10749 54 DRVVVICPG-RIESYVKYAELAYDLFHLGYDVLIIDH 89 (330)
T ss_pred CcEEEEECC-ccchHHHHHHHHHHHHHCCCeEEEEcC
Confidence 445777774 568998999999999999998866644
No 344
>PTZ00445 p36-lilke protein; Provisional
Probab=29.84 E-value=58 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=23.7
Q ss_pred CChHH-HHHHHHHHHhCCCEEEEEeCCCC
Q 030502 26 GHINP-MLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 26 GH~~P-~l~La~~La~rGh~VT~i~~~~~ 53 (176)
+|..| +..+.++|.++|..|+++|-.+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56666 88999999999999999997654
No 345
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=29.78 E-value=1.4e+02 Score=22.54 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=24.0
Q ss_pred CCccEEEe-cC-cchhHHHHHhhcCCCeEEEe
Q 030502 118 DSFACLIT-DA-AWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~-D~-~~~~~~~vA~~lgiP~v~f~ 147 (176)
.++|+|+. |. ..+++..+|..+|+|.+..-
T Consensus 50 ~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 50 KDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred CCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 47999998 44 45688899999999987754
No 346
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.70 E-value=1.2e+02 Score=21.63 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=31.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCC-EEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGF-SITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh-~VT~i~~~ 51 (176)
++.++.++....+|+.-+.++.++|.++|. ++-++...
T Consensus 50 ~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEEC
Confidence 677888888888999999999999999986 66666554
No 347
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=29.69 E-value=1.4e+02 Score=21.65 Aligned_cols=38 Identities=16% Similarity=-0.013 Sum_probs=32.8
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+++...||.|=..-.++++...+.+|..|.|++.+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 46677899999999999999999999999999987543
No 348
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=29.69 E-value=86 Score=25.67 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.6
Q ss_pred eEEEec-CCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 16 RVILFP-LPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 16 ~Il~vp-~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
++++|. =.|.|=..-...+|..+|++|++|-+++++...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 455555 466699999999999999999999999887543
No 349
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=29.29 E-value=1e+02 Score=24.37 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=30.6
Q ss_pred EEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 18 ILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 18 l~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
.+..-+|.|-......+|..++++|++|-++..+..
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 344467889999999999999999999999988753
No 350
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=29.25 E-value=89 Score=22.96 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=20.7
Q ss_pred eEEEecCC--CCCChHHHHHHHHHHHhCCCEEEE
Q 030502 16 RVILFPLP--FQGHINPMLQLGSILYSEGFSITI 47 (176)
Q Consensus 16 ~Il~vp~p--~~GH~~P~l~La~~La~rGh~VT~ 47 (176)
+|.++..- ..-+..-..+|++.|+++|+.|..
T Consensus 3 ~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 3 QIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 45655432 224456678899999999984433
No 351
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=29.21 E-value=98 Score=26.66 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=20.4
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
.++|++|.... ...+|+++|||++-+
T Consensus 372 ~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 372 AGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred cCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 36888887653 678999999999843
No 352
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.16 E-value=82 Score=23.44 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=25.2
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
-++++++ +-|.+.| |+.+|.++|.+|..++.+.
T Consensus 107 D~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 107 DAVALVT--RDADFLP---VINKAKENGKETIVIGAEP 139 (160)
T ss_pred CEEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCC
Confidence 3566766 6777765 5678889999999999754
No 353
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=29.15 E-value=1.5e+02 Score=20.11 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=27.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 23 PFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
...|.---+.+.++.+.++|..|..+|.....+
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 466888889999999999999998888875554
No 354
>PRK06114 short chain dehydrogenase; Provisional
Probab=29.07 E-value=1.2e+02 Score=23.32 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=24.5
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.++++++..+.| --..+++.|+++|++|.++..
T Consensus 8 ~k~~lVtG~s~g---IG~~ia~~l~~~G~~v~~~~r 40 (254)
T PRK06114 8 GQVAFVTGAGSG---IGQRIAIGLAQAGADVALFDL 40 (254)
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 356666644433 678999999999999988764
No 355
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=29.02 E-value=1.6e+02 Score=24.56 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=32.7
Q ss_pred CCce-EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 13 NRRR-VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 13 ~~~~-Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
++.+ |++..-++.|=..-...|+..|+.+|++|-++-.+..
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 3445 4566677789999999999999999999999977543
No 356
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=29.01 E-value=1.1e+02 Score=23.00 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=21.5
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
++++. .+.|++ -..+++.|+++|++|+.+..
T Consensus 2 ~~lIt-G~sg~i--G~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 2 IALVT-GGMGGI--GTAICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEEE-CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 34444 234554 57889999999999877654
No 357
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=28.99 E-value=1.4e+02 Score=24.50 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCCCCCccEEEecCcchh--HHHHHhhcCCCeEEEecc
Q 030502 101 FRDCLANKLMSNSQESKDSFACLITDAAWFI--AHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 149 (176)
+.++++.+++ .++.||+++..... +..++++.|++.+.+-+.
T Consensus 241 l~~l~~~ik~-------~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl 284 (311)
T PRK09545 241 LHEIRTQLVE-------QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPL 284 (311)
T ss_pred HHHHHHHHHH-------cCCCEEEecCCCChHHHHHHHHhcCCeEEEeccc
Confidence 4555666655 58999999987753 468999999998776443
No 358
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=28.95 E-value=2.4e+02 Score=24.66 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 23 PFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
...|=..-...|++.|+++|++|..+=+-
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 34577788899999999999999987653
No 359
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=28.94 E-value=94 Score=23.47 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=23.5
Q ss_pred CccEEEecCcc--hhHHHHHhhcCCCeEEEeccc
Q 030502 119 SFACLITDAAW--FIAHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 119 ~~d~vI~D~~~--~~~~~vA~~lgiP~v~f~~~~ 150 (176)
+||+||..... .....--.+.++|++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 79999998766 444566678899999997765
No 360
>PRK06196 oxidoreductase; Provisional
Probab=28.81 E-value=1.2e+02 Score=24.33 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=23.9
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+.++++... |- --..++++|+++|++|+++.-
T Consensus 26 ~k~vlITGas-gg--IG~~~a~~L~~~G~~Vv~~~R 58 (315)
T PRK06196 26 GKTAIVTGGY-SG--LGLETTRALAQAGAHVIVPAR 58 (315)
T ss_pred CCEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEEeC
Confidence 3566666443 43 468899999999999988653
No 361
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=28.79 E-value=1.2e+02 Score=25.38 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=19.6
Q ss_pred CCccEEEecCcchhHHHHH--hhcCCCeEEEecc
Q 030502 118 DSFACLITDAAWFIAHSVA--NDFRLPTIVLLTD 149 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA--~~lgiP~v~f~~~ 149 (176)
.+||+||++.-.+....+. ..+++|.+...+.
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td 136 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATVMTD 136 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4899999975433222222 3468999765443
No 362
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.77 E-value=66 Score=23.39 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=22.4
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.+|.|+-....| ..+++.|+++||+|+++...
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeeccc
Confidence 456666654433 57899999999999998643
No 363
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.46 E-value=80 Score=27.51 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=25.0
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
..+|+++...+.| +.+|+.|.++|++|+..=.
T Consensus 7 ~~~i~v~G~G~sG-----~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 7 GPMVLVLGLGESG-----LAMARWCARHGARLRVADT 38 (498)
T ss_pred CCEEEEEeecHhH-----HHHHHHHHHCCCEEEEEcC
Confidence 4578888876666 4599999999999987554
No 364
>PRK08265 short chain dehydrogenase; Provisional
Probab=28.44 E-value=1.2e+02 Score=23.41 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=23.8
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+.++++..+. ---..+++.|+++|++|+++.-
T Consensus 6 ~k~vlItGas~---gIG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 6 GKVAIVTGGAT---LIGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CCEEEEECCCC---hHHHHHHHHHHHCCCEEEEEeC
Confidence 35566664332 3678999999999999988754
No 365
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.36 E-value=86 Score=26.88 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=22.4
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEEe
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 147 (176)
.+||++|.... ...+|+++|||...+.
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 48999998875 6678999999998764
No 366
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=28.35 E-value=3.4e+02 Score=22.44 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=33.6
Q ss_pred chHHHHHHHHHhhcCCCCCCCCccEEEecCcchh--HHHHHhhcCCCeEEEeccc
Q 030502 98 VVPFRDCLANKLMSNSQESKDSFACLITDAAWFI--AHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 98 ~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~ 150 (176)
.+.-++.++++.+. ..|.+||++-+... ...+|++.++|....--..
T Consensus 68 ~~~r~~~~~~l~~~------~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t 116 (308)
T PRK05428 68 EEERKERLKKLFSL------EPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLST 116 (308)
T ss_pred HHHHHHHHHHHhCC------CCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcH
Confidence 34445667777653 47888888877654 4799999999999875443
No 367
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=28.29 E-value=1.3e+02 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=23.4
Q ss_pred CCccEEEe-cC-cchhHHHHHhhcCCCeEEEec
Q 030502 118 DSFACLIT-DA-AWFIAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 118 ~~~d~vI~-D~-~~~~~~~vA~~lgiP~v~f~~ 148 (176)
.++|+|++ +. -.+.+..+|.++|+|.+..--
T Consensus 49 ~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 49 DGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 47999986 33 335678899999999998644
No 368
>CHL00175 minD septum-site determining protein; Validated
Probab=28.22 E-value=1.6e+02 Score=23.22 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=29.8
Q ss_pred ceEEEe-c-CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 15 RRVILF-P-LPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 15 ~~Il~v-p-~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.++..| . -+|.|=..-...||..|+++|++|-++=.+.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 444444 4 3777888999999999999999988886654
No 369
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=28.19 E-value=1.5e+02 Score=25.20 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=29.9
Q ss_pred CCceEE-EecC-CCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 13 NRRRVI-LFPL-PFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 13 ~~~~Il-~vp~-p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
++.+|. +... +|.|=......||..|+.+|++|-++=.
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl 143 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEG 143 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 344554 4443 7779999999999999999999988864
No 370
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=28.18 E-value=1e+02 Score=26.54 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=26.1
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE-ecccHHHH
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL-LTDSIAAS 154 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f-~~~~a~~~ 154 (176)
....+++.+.....+..+.+++|+|++.+ .+.+....
T Consensus 235 A~lniv~~~~~~~~a~~Lee~~giP~~~~~~p~G~~~t 272 (432)
T TIGR01285 235 SCCTLAIGESMRRAASLLADRCGVPYIVFPSLMGLEAV 272 (432)
T ss_pred CcEEEEEChhHHHHHHHHHHHHCCCeEecCCCcChHHH
Confidence 46777777665555678889999999987 45554433
No 371
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=28.10 E-value=96 Score=26.33 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=22.7
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+|.++.....| +.+|..|+++||+|+.+...
T Consensus 2 kI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 46666543333 68899999999999998654
No 372
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.08 E-value=1e+02 Score=23.80 Aligned_cols=31 Identities=13% Similarity=0.032 Sum_probs=20.9
Q ss_pred CccEEEecCcchh--HH-HHHhhcCCCeEEEecc
Q 030502 119 SFACLITDAAWFI--AH-SVANDFRLPTIVLLTD 149 (176)
Q Consensus 119 ~~d~vI~D~~~~~--~~-~vA~~lgiP~v~f~~~ 149 (176)
+||+||....... .. .+-+..|+|++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 7999998754433 22 3444589999888653
No 373
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=28.02 E-value=1.6e+02 Score=22.31 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=23.3
Q ss_pred CccEEEe-c-CcchhHHHHHhhcCCCeEEEec
Q 030502 119 SFACLIT-D-AAWFIAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 119 ~~d~vI~-D-~~~~~~~~vA~~lgiP~v~f~~ 148 (176)
.+|+|+. + ...+.+..+|+.+|+|.+...-
T Consensus 64 ~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk 95 (202)
T PRK00455 64 EFDVVAGPATGGIPLAAAVARALDLPAIFVRK 95 (202)
T ss_pred CCCEEEecccCcHHHHHHHHHHhCCCEEEEec
Confidence 7888886 2 3556788999999999987644
No 374
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=28.01 E-value=40 Score=28.12 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=24.2
Q ss_pred CccEEEe-cCcc-hhHHHHHhhcCCCeEEEeccc
Q 030502 119 SFACLIT-DAAW-FIAHSVANDFRLPTIVLLTDS 150 (176)
Q Consensus 119 ~~d~vI~-D~~~-~~~~~vA~~lgiP~v~f~~~~ 150 (176)
.||+||. |.-. ..+..=|.++|||.|.+.=+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 6887776 7654 456788999999999986543
No 375
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=27.94 E-value=1.3e+02 Score=25.07 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=30.5
Q ss_pred eEEE--ecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVIL--FPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~--vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
-|.+ +...|.|=.--...|++.|.++|++|.+++-.
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3455 67789999999999999999999999998754
No 376
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=27.78 E-value=1.5e+02 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=28.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
-.++++++ +-|-+.|. .+.+.++|-+|+++....
T Consensus 111 ~D~ivl~S--gD~DF~p~---v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 111 VDTIVLFS--GDGDFIPL---VEAARDKGKRVEVAGIEP 144 (181)
T ss_pred CCEEEEEc--CCccHHHH---HHHHHHcCCEEEEEecCC
Confidence 44778877 88999988 677888999999999875
No 377
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=27.71 E-value=1.4e+02 Score=23.38 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=32.3
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLNS 54 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~r-Gh~VT~i~~~~~~ 54 (176)
+++...|+.|-..-++++|..++.+ |+.|-|++.+...
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 4566689999999999999999998 6999999998544
No 378
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=27.50 E-value=1.8e+02 Score=21.21 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=19.2
Q ss_pred CccEEEe--cCcchhHHHHHhhcCCCeE
Q 030502 119 SFACLIT--DAAWFIAHSVANDFRLPTI 144 (176)
Q Consensus 119 ~~d~vI~--D~~~~~~~~vA~~lgiP~v 144 (176)
++|+||. -..+..+..+++.+|+|.+
T Consensus 31 ~~d~vvgv~~GG~~fa~~L~~~L~~~~v 58 (156)
T PRK09177 31 QWKGIIAVTRGGLVPAAILARELGIRLV 58 (156)
T ss_pred CCCEEEEEecCCeehHHHHHHHcCCCce
Confidence 4677766 2344567899999999975
No 379
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.48 E-value=1.2e+02 Score=26.89 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 146 (176)
.++|++|.... +..+|+++|+|.+.+
T Consensus 436 ~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 436 EPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred cCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 47889888754 678999999999754
No 380
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.44 E-value=1.5e+02 Score=24.93 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCCceEEEec--CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 12 RNRRRVILFP--LPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 12 ~~~~~Il~vp--~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
..+.+|..+. =+|.|=..-...||..|+.+|++|-++=.+.
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 3445555443 3777999999999999999999998886654
No 381
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=27.44 E-value=1.2e+02 Score=21.41 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=22.2
Q ss_pred EecCCCC-CChHHHHHHHHHHHhCCCEE-EEEeCC
Q 030502 19 LFPLPFQ-GHINPMLQLGSILYSEGFSI-TIIHTT 51 (176)
Q Consensus 19 ~vp~p~~-GH~~P~l~La~~La~rGh~V-T~i~~~ 51 (176)
+-..|-. ....-.+++|+.++++||+| +++--.
T Consensus 7 ~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 7 VTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 3344542 33467888999999999984 665543
No 382
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=27.27 E-value=72 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 28 INPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 28 ~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.--.+=++..|.++||+|++..++.
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npA 37 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPA 37 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHH
Confidence 3446778899999999999998863
No 383
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.20 E-value=1.3e+02 Score=23.15 Aligned_cols=32 Identities=6% Similarity=-0.018 Sum_probs=23.4
Q ss_pred ceEEEecCCC--CCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 15 RRVILFPLPF--QGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 15 ~~Il~vp~p~--~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
.++++++..+ .| --..++++|+++|++|.+..
T Consensus 7 ~k~~lItGas~~~g---IG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 7 GKKIVVMGVANKRS---IAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CCEEEEeCCCCCCc---hHHHHHHHHHHCCCEEEEec
Confidence 4667777544 22 45899999999999988764
No 384
>PF12846 AAA_10: AAA-like domain
Probab=27.15 E-value=1.2e+02 Score=23.57 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=32.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEE
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITII 48 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i 48 (176)
+.|++++..+|.|=..-+..+.+.++.+|..|.++
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~ 35 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF 35 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999999999999988888
No 385
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.15 E-value=65 Score=28.59 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=26.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+.|++++...-.| ..+++.|.++||+|+++-.+.
T Consensus 417 ~~hiiI~G~G~~G-----~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVG-----SLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHH-----HHHHHHHHHCCCCEEEEECCH
Confidence 5788888765555 469999999999998887653
No 386
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=27.14 E-value=1.1e+02 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 030502 32 LQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 32 l~La~~La~rGh~VT~i~~~~ 52 (176)
..|+++|.++||+|..+....
T Consensus 14 ~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 14 SHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred HHHHHHHHhCCCeEEEEeCCC
Confidence 889999999999999998643
No 387
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.06 E-value=1.2e+02 Score=25.91 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=27.2
Q ss_pred CCccEEEec-CcchhHHHHHhhcCCCeEEEe-cccHHHHH
Q 030502 118 DSFACLITD-AAWFIAHSVANDFRLPTIVLL-TDSIAASL 155 (176)
Q Consensus 118 ~~~d~vI~D-~~~~~~~~vA~~lgiP~v~f~-~~~a~~~~ 155 (176)
....+++.. ....++..+.+++|+|++.+. +.+.....
T Consensus 222 A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~p~G~~~t~ 261 (428)
T cd01965 222 AKATIALGEYSGRKAAKALEEKFGVPYILFPTPIGLKATD 261 (428)
T ss_pred CcEEEEEChhhhHHHHHHHHHHHCCCeeecCCCcChHHHH
Confidence 467788876 555677788889999999876 55544333
No 388
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=26.99 E-value=1.3e+02 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=23.2
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+.++++..+.| --..+++.|+++|++|.++.-
T Consensus 5 ~k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 5 GEVVLVTGGASG---LGRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred CcEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 355566644333 458899999999999987653
No 389
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=26.93 E-value=1.4e+02 Score=24.44 Aligned_cols=37 Identities=3% Similarity=-0.046 Sum_probs=26.9
Q ss_pred eEEEecC--CC-CCChHHHHHHHHHHHhC--CCEEEEEeCCC
Q 030502 16 RVILFPL--PF-QGHINPMLQLGSILYSE--GFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~--p~-~GH~~P~l~La~~La~r--Gh~VT~i~~~~ 52 (176)
||+++.. +. .|=-.-+..+++.|.++ ||+|++++...
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 5665542 33 34447789999999999 89999888653
No 390
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.93 E-value=1.5e+02 Score=18.60 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=26.3
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
+|++++. ..++..-.+.+++.|.+.|++|.+-..
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4566663 457788899999999999999987543
No 391
>PRK13768 GTPase; Provisional
Probab=26.90 E-value=1.5e+02 Score=23.40 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=30.7
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
-+++...+|.|=..-...++..|+.+|++|.++..+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 3556667777888889999999999999999998764
No 392
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.87 E-value=1.5e+02 Score=25.62 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=33.6
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHH--hCCCEEEEEeCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILY--SEGFSITIIHTTLN 53 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La--~rGh~VT~i~~~~~ 53 (176)
...++|+...|.|=..-...||..++ ..|++|.+++.+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 34577777788899999999999998 56899999999865
No 393
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=26.85 E-value=1.2e+02 Score=24.69 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=22.2
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+|++.. +.| .--..+++.|+++||+|+.+.-
T Consensus 5 k~ilItG--atG--~IG~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVTG--HTG--FKGSWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CEEEEEC--CCC--hhHHHHHHHHHHCCCEEEEEeC
Confidence 4555544 333 2347899999999999987753
No 394
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.80 E-value=1.5e+02 Score=25.38 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=61.8
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCC-CEEEEEeCCCCCC-CCCCCCCceEEEcCCCCCCCCCC--CCCCCCCHHHH
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEG-FSITIIHTTLNSP-NSCNYPHFEFCSFSDDGFSETYQ--PSKVADDIPAL 89 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rG-h~VT~i~~~~~~~-~~~~~~~i~~~~l~~~~~p~~~~--~~~~~~~~~~~ 89 (176)
+.+|+++. .-+=-++=|-.|.+++.+.+ .+..++.|..... ... ...++...+. . +++. ......++.+.
T Consensus 3 ~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~-~~~le~~~i~---~-pdy~L~i~~~~~tl~~~ 76 (383)
T COG0381 3 MLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEML-DQVLELFGIR---K-PDYDLNIMKPGQTLGEI 76 (383)
T ss_pred ceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHH-HHHHHHhCCC---C-CCcchhccccCCCHHHH
Confidence 34555443 44456777888999999987 7777777764332 110 0011111111 0 1211 11112233322
Q ss_pred HHHHHHhcchHHHHHHHHHhhcCCCCCCCCccEEEe--cCcch-hHHHHHhhcCCCeEEE
Q 030502 90 LLSLNAKCVVPFRDCLANKLMSNSQESKDSFACLIT--DAAWF-IAHSVANDFRLPTIVL 146 (176)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~vI~--D~~~~-~~~~vA~~lgiP~v~f 146 (176)
. ..+...+.+++++. +||+|++ |.-.. ++..+|-+.+||+...
T Consensus 77 t----~~~i~~~~~vl~~~----------kPD~VlVhGDT~t~lA~alaa~~~~IpV~Hv 122 (383)
T COG0381 77 T----GNIIEGLSKVLEEE----------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHV 122 (383)
T ss_pred H----HHHHHHHHHHHHhh----------CCCEEEEeCCcchHHHHHHHHHHhCCceEEE
Confidence 2 23334566766653 7898887 76554 4578889999999875
No 395
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.77 E-value=1.9e+02 Score=20.56 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++.+|++-...+.+|-.=--=++..|.+.|++|......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 367888888888899988888888899999999988765
No 396
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=26.75 E-value=89 Score=26.90 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=25.1
Q ss_pred CceEEEecCCCCCChHHHHH-HHHHHHhCCCEEEEEeC
Q 030502 14 RRRVILFPLPFQGHINPMLQ-LGSILYSEGFSITIIHT 50 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~-La~~La~rGh~VT~i~~ 50 (176)
..+|+++...+.| +. +|+.|.++|++|+..=.
T Consensus 7 ~~~v~viG~G~sG-----~s~~a~~L~~~G~~V~~~D~ 39 (461)
T PRK00421 7 IKRIHFVGIGGIG-----MSGLAEVLLNLGYKVSGSDL 39 (461)
T ss_pred CCEEEEEEEchhh-----HHHHHHHHHhCCCeEEEECC
Confidence 3578888877766 55 89999999999987643
No 397
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.70 E-value=82 Score=26.95 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=29.2
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+.||++.-.. .+...=..++.+.|.++|++|.++.++.
T Consensus 6 ~k~IllgvTG-siaa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 6 GKRIVLGVSG-GIAAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCeEEEEEeC-HHHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4567665544 4456677899999999999999999874
No 398
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.64 E-value=84 Score=27.10 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
..+|+++.....| +.+++.|.++|++|++.=.
T Consensus 14 ~~~i~v~G~G~sG-----~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 14 NKKVAVVGIGVSN-----IPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CCeEEEEcccHHH-----HHHHHHHHHCCCEEEEECC
Confidence 3578877765545 5999999999999988654
No 399
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=26.55 E-value=1.4e+02 Score=23.45 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=32.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLN 53 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~r-Gh~VT~i~~~~~ 53 (176)
-+++...|+.|=..-.++++..++.. |+.|.|++.+..
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 35667778999999999999999887 999999998754
No 400
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=26.55 E-value=1.2e+02 Score=23.53 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=34.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+++++.+.+....|..-+.++.++|.+.|.++.++....
T Consensus 139 ~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~ 177 (213)
T cd02069 139 KADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGA 177 (213)
T ss_pred CCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEECh
Confidence 778888998999999999999999999998888877653
No 401
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=26.49 E-value=96 Score=21.98 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 30 PMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
...+..++|.++||.|+++|+....
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 5566677778999999999986543
No 402
>PRK05973 replicative DNA helicase; Provisional
Probab=26.44 E-value=1.3e+02 Score=23.72 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=33.1
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+++..-||.|=..-.++++...+.+|..|.|++.+...
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~ 104 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE 104 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH
Confidence 56667899999999999999999999999999987643
No 403
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=26.41 E-value=71 Score=27.40 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=24.2
Q ss_pred EEEecCCC-C--CChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFPLPF-Q--GHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp~p~-~--GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.++=|+.. . ||+.|+ ...+.|++.||++.++.++
T Consensus 38 ~G~dPTg~slHlGhlv~l-~~l~~lQ~~G~~~~~ligd 74 (408)
T PRK05912 38 LGFDPTAPSLHLGHLVPL-LKLRRFQDAGHKPIALIGG 74 (408)
T ss_pred EeecCCCCCccHHhHHHH-HHHHHHHHCCCcEEEEEcC
Confidence 34555532 2 999985 5667888999999888754
No 404
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.40 E-value=81 Score=25.11 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=31.4
Q ss_pred eEEEecCC----CCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 16 RVILFPLP----FQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 16 ~Il~vp~p----~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+++|.==| -.+|..-.+++++.|+.+|..|..+..+.|.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL 203 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL 203 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH
Confidence 56665322 2389999999999999999999999888765
No 405
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=26.31 E-value=3.7e+02 Score=22.10 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=34.8
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~ 69 (176)
+..++++- .-.|-..-.+..++.+.++|..|..+|............+...+.++
T Consensus 78 ~~dlvI~i-S~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~~~~~~i~ip 132 (337)
T PRK08674 78 EKTLVIAV-SYSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKEHGLPVIIVP 132 (337)
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHhcCCeEEEeC
Confidence 33454443 45688888899999999999988777754321111122356666666
No 406
>PLN02712 arogenate dehydrogenase
Probab=26.26 E-value=79 Score=29.03 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=32.3
Q ss_pred CCccCCcCCCCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 2 ETQQDPCKLPRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 2 ~~~~~~~~~~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|++...|.-..++.+|+++.....| ..+++.|.+.||+|+++...
T Consensus 357 ~~~~~~~~~~~~~~kIgIIGlG~mG-----~slA~~L~~~G~~V~~~dr~ 401 (667)
T PLN02712 357 NAQVSGCVNDGSKLKIAIVGFGNFG-----QFLAKTMVKQGHTVLAYSRS 401 (667)
T ss_pred cchhhhccCCCCCCEEEEEecCHHH-----HHHHHHHHHCcCEEEEEECC
Confidence 4555566665567899999754434 37889999999999877654
No 407
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=26.23 E-value=1.6e+02 Score=23.49 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=29.9
Q ss_pred ceEEEecC-CCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPL-PFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~-p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..|+++.. .|.|=..-.-.||..|+.+|.+|..|=-+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45666654 66799999999999999999999888554
No 408
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=26.21 E-value=87 Score=24.01 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=25.0
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+..+|+++.... -...-++.|.+.|.+||++.+..
T Consensus 8 ~gk~vlVvGgG~-----va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGD-----VALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCH-----HHHHHHHHHHHCCCEEEEEcCCC
Confidence 345777775332 23677889999999999998753
No 409
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.21 E-value=1.3e+02 Score=23.24 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=23.3
Q ss_pred ceEEEecCC--CCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 15 RRVILFPLP--FQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 15 ~~Il~vp~p--~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
.++++++.. +.| --.++++.|+++|++|.+..
T Consensus 7 ~k~~lItGa~~s~G---IG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 7 GKRILVTGVITDSS---IAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CCEEEEeCCCCcch---HHHHHHHHHHHCCCEEEEec
Confidence 356667654 333 56789999999999988764
No 410
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=26.17 E-value=1.8e+02 Score=21.82 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=29.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
-.++...||.|-..-+..+.+.+.++|.+|.++++..
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 3455578999999999999999999999999998764
No 411
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=26.12 E-value=1.4e+02 Score=22.70 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=22.2
Q ss_pred EEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 18 ILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 18 l~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++++ .+.|.+ -..+++.|+++|++|+.+...
T Consensus 4 vlIt-Ga~g~l--G~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 4 ALVT-GAASGI--GLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred EEEc-CCcchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3444 244555 478999999999998887654
No 412
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.11 E-value=1.6e+02 Score=19.87 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=28.7
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
..++++- -..|.-.-+++.++.+.++|..|..+|.....+
T Consensus 47 ~d~~I~i-S~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 47 DTLVIAI-SQSGETADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 3444333 345667779999999999999888888765443
No 413
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=26.07 E-value=97 Score=26.65 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.3
Q ss_pred ceEEEecCCCCCChHH-HHHHHHHHHhCCCEEEEE
Q 030502 15 RRVILFPLPFQGHINP-MLQLGSILYSEGFSITII 48 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P-~l~La~~La~rGh~VT~i 48 (176)
..+++|+..+ ||+.- ...+++.|.. ||+|-++
T Consensus 103 ~pvLiV~Pl~-g~~~~L~RS~V~~Ll~-g~dVYl~ 135 (406)
T TIGR01849 103 PAVLIVAPMS-GHYATLLRSTVEALLP-DHDVYIT 135 (406)
T ss_pred CcEEEEcCCc-hHHHHHHHHHHHHHhC-CCcEEEE
Confidence 6889999555 87744 5678889999 9996554
No 414
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.06 E-value=75 Score=24.13 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCEEEEEeCC
Q 030502 30 PMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~~ 51 (176)
--.++++.|+++|++|+.+.-.
T Consensus 17 iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 17 IGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 3478999999999998877653
No 415
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=25.92 E-value=70 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 030502 31 MLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~ 52 (176)
-..|+.+|...||+||+++-..
T Consensus 11 G~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 11 GRALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred hHHHHHHHHhCCCeEEEEEcCC
Confidence 3578888999999999998754
No 416
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=25.88 E-value=1.9e+02 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 13 NRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 13 ~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+..+++++. +..=+.|++.+.+.+.++|.+|+++-...
T Consensus 101 ~~~~~vlIa--gG~GiaP~~s~l~~~~~~~~~v~l~~~~r 138 (250)
T PRK00054 101 IGGKVLLVG--GGIGVAPLYELAKELKKKGVEVTTVLGAR 138 (250)
T ss_pred CCCeEEEEe--ccccHHHHHHHHHHHHHcCCcEEEEEEcC
Confidence 456788777 33447899999999999898999877643
No 417
>PRK12747 short chain dehydrogenase; Provisional
Probab=25.88 E-value=1.5e+02 Score=22.69 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=22.9
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
+.++++..+.| --..++++|+++|++|.+..
T Consensus 5 k~~lItGas~g---IG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 5 KVALVTGASRG---IGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CEEEEeCCCCh---HHHHHHHHHHHCCCeEEEEc
Confidence 45666644433 57889999999999998764
No 418
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.87 E-value=79 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 24 FQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 24 ~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++.|+.=+.+-+.+|.++|.+..++.+-
T Consensus 60 s~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 60 SSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred ccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 5689999999999999999998887774
No 419
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=25.85 E-value=1.6e+02 Score=25.88 Aligned_cols=40 Identities=5% Similarity=0.028 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCCCCCccEEEecCcch----hHHHHHhhcCCCeEEEe
Q 030502 101 FRDCLANKLMSNSQESKDSFACLITDAAWF----IAHSVANDFRLPTIVLL 147 (176)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~----~~~~vA~~lgiP~v~f~ 147 (176)
+.++++.+++ .++.||+++.... ....+|++.|+|.+.+.
T Consensus 409 L~~Li~~IK~-------~~V~~IF~Epq~~~~~~~l~~IA~e~Gv~V~~l~ 452 (479)
T TIGR03772 409 RRRLTRTIEN-------LKVPAVFLEPNLAARSTTLNEIADELGVRVCAIY 452 (479)
T ss_pred HHHHHHHHHH-------cCCCEEEEeCCCCCchHHHHHHHHHcCCcEEeee
Confidence 5566666665 5899999998774 25789999999997764
No 420
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=25.83 E-value=2e+02 Score=22.07 Aligned_cols=39 Identities=13% Similarity=-0.038 Sum_probs=33.1
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
.-+++...|+.|-..-..+++...+.+|..|.|++.+..
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 346667789999999999999988889999999999754
No 421
>PRK09186 flagellin modification protein A; Provisional
Probab=25.82 E-value=1.5e+02 Score=22.65 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=22.4
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
+.++++..+ | .--..+++.|+++|++|.++..
T Consensus 5 k~vlItGas-~--giG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 5 KTILITGAG-G--LIGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CEEEEECCC-c--hHHHHHHHHHHHCCCEEEEEec
Confidence 445555333 3 2567889999999999988754
No 422
>PRK06851 hypothetical protein; Provisional
Probab=25.80 E-value=1.6e+02 Score=24.93 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=30.8
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+++-..|+.|...-+.++++.+.++|++|.++.+..
T Consensus 33 ~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~ 68 (367)
T PRK06851 33 FILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSS 68 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 455557999999999999999999999999876654
No 423
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=25.77 E-value=1e+02 Score=23.45 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
..+|+++.+ | +--..+++.|.+.|++|+++-
T Consensus 28 gk~v~I~G~---G--~vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 28 GKTVAVQGL---G--KVGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCEEEEECC---C--HHHHHHHHHHHHCCCEEEEEc
Confidence 346777665 3 455789999999999999653
No 424
>PLN02828 formyltetrahydrofolate deformylase
Probab=25.70 E-value=1.7e+02 Score=23.64 Aligned_cols=48 Identities=15% Similarity=0.044 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhhcCCCCCCCCccEEEecCc---chhHHHHHhhcCCCeEEEec
Q 030502 98 VVPFRDCLANKLMSNSQESKDSFACLITDAA---WFIAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 98 ~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~---~~~~~~vA~~lgiP~v~f~~ 148 (176)
...|++++.++++..- ...+.+||++.- ...+...|+++|||++.+..
T Consensus 81 g~nl~~ll~~~~~g~l---~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 81 DHCLIDLLHRWQDGRL---PVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred ChhHHHHHHhhhcCCC---CceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 3457888887754211 135788888762 22467889999999987644
No 425
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=25.63 E-value=1.5e+02 Score=20.75 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=28.3
Q ss_pred EEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 18 ILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 18 l~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+|++..+.|=..-.+.|++.|.++|.+|-++=+.
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~ 36 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPV 36 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4566677788899999999999999999998543
No 426
>PRK12377 putative replication protein; Provisional
Probab=25.63 E-value=1.6e+02 Score=23.37 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=30.4
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..+++...||.|=..-+..++.+|..+|+.|.+++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 4578888888888888888999998889888777664
No 427
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.59 E-value=1e+02 Score=27.13 Aligned_cols=38 Identities=21% Similarity=0.048 Sum_probs=29.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
..+|++.-..+ .-..=..+|++.|.++|++|.++.++.
T Consensus 70 ~k~IllgVtGs-IAayka~~lvr~L~k~G~~V~VvmT~s 107 (475)
T PRK13982 70 SKRVTLIIGGG-IAAYKALDLIRRLKERGAHVRCVLTKA 107 (475)
T ss_pred CCEEEEEEccH-HHHHHHHHHHHHHHhCcCEEEEEECcC
Confidence 35677665433 344578899999999999999999875
No 428
>PRK10490 sensor protein KdpD; Provisional
Probab=25.53 E-value=1.1e+02 Score=29.17 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=33.2
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+.+|-+=..||.|-..-|++-|++|.++|++|.+-..+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 55788888899999999999999999999999875554
No 429
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=25.50 E-value=1.9e+02 Score=21.96 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=24.8
Q ss_pred CCccEEEec--CcchhHHHHHhhcCCCeEEEecc
Q 030502 118 DSFACLITD--AAWFIAHSVANDFRLPTIVLLTD 149 (176)
Q Consensus 118 ~~~d~vI~D--~~~~~~~~vA~~lgiP~v~f~~~ 149 (176)
..+|+|+.= ...+++..+|..+|+|...+...
T Consensus 84 ~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~ 117 (200)
T PRK02277 84 EEVDVVVGIAKSGVPLATLVADELGKDLAIYHPK 117 (200)
T ss_pred CCCCEEEeeccCCHHHHHHHHHHhCCCcEEEecc
Confidence 479999872 35567889999999999877543
No 430
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.44 E-value=37 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeC
Q 030502 29 NPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~ 50 (176)
+=+|.|..++.++|.+|+|..-
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~L 53 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQL 53 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHH
Confidence 5688999999999999998653
No 431
>PRK09183 transposase/IS protein; Provisional
Probab=25.33 E-value=1.8e+02 Score=23.08 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=30.6
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..+++++..+|.|=..-...++..+..+|+.|.|++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 45788888888877777777788888899999998754
No 432
>PRK05802 hypothetical protein; Provisional
Probab=25.30 E-value=1.5e+02 Score=24.43 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=29.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
..+++++. +..=+-|++.+++.|.++|.+|+++.....
T Consensus 172 ~~~~llIa--GGiGIaPl~~l~~~l~~~~~~v~li~g~r~ 209 (320)
T PRK05802 172 NGKSLVIA--RGIGQAPGVPVIKKLYSNGNKIIVIIDKGP 209 (320)
T ss_pred CCeEEEEE--eEEeHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 34777777 333489999999999999988998876543
No 433
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=25.30 E-value=1.2e+02 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=27.3
Q ss_pred eEEEecC--CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCC
Q 030502 16 RVILFPL--PFQGHINPMLQLGSILYSEGFSITIIHTTLNSP 55 (176)
Q Consensus 16 ~Il~vp~--p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~ 55 (176)
||.++.. .|.|--...++||-.|+..|+.|-++=.+...+
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~ 42 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQP 42 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4444443 667888999999999999999999998876443
No 434
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.26 E-value=1.8e+02 Score=23.00 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCCCCCCccEEEecCcchhH--H---HHHhhcCCCeEEE
Q 030502 101 FRDCLANKLMSNSQESKDSFACLITDAAWFIA--H---SVANDFRLPTIVL 146 (176)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~--~---~vA~~lgiP~v~f 146 (176)
+.++.+.+++ .++.||+++.....- . .+|++.|+|.+.+
T Consensus 195 l~~l~~~ik~-------~~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 195 IAAFQNAIKN-------RQIDALIVNPQQASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred HHHHHHHHHh-------CCCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEee
Confidence 4555555554 479999999877532 2 4589999999876
No 435
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=25.25 E-value=1.5e+02 Score=24.33 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCCccEEEecCcch-----hHHHHHhhcCCCeEEEec
Q 030502 99 VPFRDCLANKLMSNSQESKDSFACLITDAAWF-----IAHSVANDFRLPTIVLLT 148 (176)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~-----~~~~vA~~lgiP~v~f~~ 148 (176)
..++++++++-+.. .++-+||-|.|-= -..+.|.+.+||+|++.-
T Consensus 133 p~IKE~vR~~I~~A-----~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD 182 (284)
T PF07894_consen 133 PHIKEVVRRMIQQA-----QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLD 182 (284)
T ss_pred CCHHHHHHHHHHHh-----cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEec
Confidence 34555555433222 5899999998762 135667799999999854
No 436
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=25.24 E-value=3.1e+02 Score=22.93 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=30.9
Q ss_pred CCccEEEe-cCc--chhHHHHHhhcCCCeEEEecccHHHHHHHHhhHhHHhCCC
Q 030502 118 DSFACLIT-DAA--WFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPILREKGY 168 (176)
Q Consensus 118 ~~~d~vI~-D~~--~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~l~~~~~ 168 (176)
..+|++|. |.. ...+..+++++|+|..-+....+.+......-..+.+.|.
T Consensus 70 ~DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~ACSTf~~AL~lAa~lI~SG~ 123 (327)
T TIGR02845 70 DDVDFFLAGDLLNQIITANFVARDLGIPFLGLYGACSTSMETLALGAMLVDGGF 123 (327)
T ss_pred HHCCEEEEeCCCCcccHHHHHHHHhCCCEEEEeccCHHHHHHHHHHHHHHhCCC
Confidence 35888877 432 1245689999999997766655444444433344444443
No 437
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=25.21 E-value=2.8e+02 Score=20.39 Aligned_cols=86 Identities=9% Similarity=0.153 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCCC-CC----C-CCCCCceEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcchHHHH
Q 030502 30 PMLQLGSILYSEGFSITIIHTTLNS-PN----S-CNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCVVPFRD 103 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~~~~~-~~----~-~~~~~i~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (176)
-+..|.+....+|..|.++.+.... .. . ...|+++++... +++-.. ...++
T Consensus 34 l~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~-~g~~~~----------------------~~~~~ 90 (171)
T cd06533 34 LMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYH-HGYFGP----------------------EEEEE 90 (171)
T ss_pred HHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEec-CCCCCh----------------------hhHHH
Confidence 3556677777789999999875321 11 1 235788887755 333110 00111
Q ss_pred HHHHHhhcCCCCCCCCccEEEecCcch----hHHHHHhhcCCCeEE
Q 030502 104 CLANKLMSNSQESKDSFACLITDAAWF----IAHSVANDFRLPTIV 145 (176)
Q Consensus 104 ~l~~l~~~~~~~~~~~~d~vI~D~~~~----~~~~vA~~lgiP~v~ 145 (176)
+++.+++ .++|+|++-+-++ |.....++++.+.+.
T Consensus 91 i~~~I~~-------~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~ 129 (171)
T cd06533 91 IIERINA-------SGADILFVGLGAPKQELWIARHKDRLPVPVAI 129 (171)
T ss_pred HHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 4555554 4899999988776 566666666555443
No 438
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.18 E-value=78 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 30 PMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
...-|.++|++.||+|+.+.++..
T Consensus 342 ta~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 342 TAMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred hHHHHHHHHHhcCceeEEeeccch
Confidence 456789999999999999998743
No 439
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=25.13 E-value=2e+02 Score=23.43 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=31.2
Q ss_pred CccEEEecCcchhH-------HHHHhhcCCCeEEEecccHHHHHHHHh
Q 030502 119 SFACLITDAAWFIA-------HSVANDFRLPTIVLLTDSIAASLSYAA 159 (176)
Q Consensus 119 ~~d~vI~D~~~~~~-------~~vA~~lgiP~v~f~~~~a~~~~~~~~ 159 (176)
.--++|+|..++.. ..-|.+.||+++.+-..++...++..+
T Consensus 78 ~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~S 125 (275)
T COG0313 78 KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSAS 125 (275)
T ss_pred CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHc
Confidence 57789999887652 245688999999998877777777653
No 440
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=25.11 E-value=1.2e+02 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=23.7
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.+|.++.. |++ -+.+|..|+++||+|+.+-..
T Consensus 4 ~kI~VIGl---G~~--G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGL---GYI--GLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred cEEEEECc---chh--hHHHHHHHHhCCCEEEEEeCC
Confidence 56777753 432 367899999999999998764
No 441
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=25.10 E-value=1.7e+02 Score=23.02 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=26.8
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
++.|+++...+.+.. -...++..|.++||+|..+--.
T Consensus 18 ~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~ 54 (273)
T PLN02211 18 PPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLK 54 (273)
T ss_pred CCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEeccc
Confidence 567999996554443 3567788899999998777654
No 442
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.07 E-value=1.6e+02 Score=24.68 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=35.2
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
-|+|+..-|.|-...+-.||+.|.+.|+.|.+...+-+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR 179 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR 179 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence 467888999999999999999999999999999987654
No 443
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=25.05 E-value=95 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=24.9
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
+.||+++. .+.+++ ..++.|...+++||++.....
T Consensus 10 ~~~vVIvG-gG~aGl----~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 10 KPNVVVLG-TGWAGA----YFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCeEEEEC-CCHHHH----HHHHHhCcCCCeEEEEcCCCC
Confidence 56898887 444443 457788767899999987543
No 444
>PRK08304 stage V sporulation protein AD; Validated
Probab=24.99 E-value=2.8e+02 Score=23.35 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCccEEEe-cCc--chhHHHHHhhcCCCeEEEecccHHHHHHHHhhHhHHhCCC
Q 030502 118 DSFACLIT-DAA--WFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPILREKGY 168 (176)
Q Consensus 118 ~~~d~vI~-D~~--~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~l~~~~~ 168 (176)
..+|++|+ |.. ...+..+++++|+|..-.....+.+......--.+.+.|.
T Consensus 76 ~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~gACST~~~AL~lAa~lI~SG~ 129 (337)
T PRK08304 76 SDIDYLLAGDLLNQIISANFAARELGIPFLGLYGACSTMMESLALGSMLIDGGF 129 (337)
T ss_pred HHCCEEEEECCCCCcchHHHHHHHhCCcEEEEeccCHHHHHHHHHHHHHHhcCC
Confidence 36899987 332 2345678899999988776655554444433344444443
No 445
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=24.96 E-value=1.7e+02 Score=24.02 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=18.7
Q ss_pred CCccEEEecCcchhHHHH--HhhcCCCeEEEe
Q 030502 118 DSFACLITDAAWFIAHSV--ANDFRLPTIVLL 147 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~v--A~~lgiP~v~f~ 147 (176)
.+||+||++.-......+ +..+++|.+...
T Consensus 103 ~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~ 134 (380)
T PRK13609 103 EKPDIVINTFPIIAVPELKKQTGISIPTYNVL 134 (380)
T ss_pred hCcCEEEEcChHHHHHHHHHhcCCCCCeEEEe
Confidence 489999998644333222 234678987543
No 446
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=24.89 E-value=1.6e+02 Score=22.37 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=35.7
Q ss_pred CCcCCCCC---CceEEEecCCCCCChHHHHHHHHHHH-hCCCEEEEEeC
Q 030502 6 DPCKLPRN---RRRVILFPLPFQGHINPMLQLGSILY-SEGFSITIIHT 50 (176)
Q Consensus 6 ~~~~~~~~---~~~Il~vp~p~~GH~~P~l~La~~La-~rGh~VT~i~~ 50 (176)
.|..+..+ ..|++++..-|.|=-+-+..|.++|. ..|..|.++=+
T Consensus 12 v~v~l~~~~l~~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~ 60 (229)
T PF01935_consen 12 VPVYLDLNKLFNRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDP 60 (229)
T ss_pred ceEEeeHHHhccceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 34445332 57999999999999999999999999 77776666654
No 447
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.88 E-value=1.2e+02 Score=25.92 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=26.0
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE-ecccHHHHH
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL-LTDSIAASL 155 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f-~~~~a~~~~ 155 (176)
....+++.+.....+..+.+++|+|++.+ .+.+.....
T Consensus 224 A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p~G~~~T~ 262 (417)
T cd01966 224 SAATLAIGESMRKAAEALEERTGVPYYVFPSLTGLEAVD 262 (417)
T ss_pred CeEEEEECHHHHHHHHHHHHHHCCCeeecCCCcchHHHH
Confidence 46777776655455678889999999987 445444333
No 448
>PRK12404 stage V sporulation protein AD; Provisional
Probab=24.81 E-value=2.4e+02 Score=23.64 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=24.8
Q ss_pred CCccEEEe-cCc--chhHHHHHhhcCCCeEEEecccHHHH
Q 030502 118 DSFACLIT-DAA--WFIAHSVANDFRLPTIVLLTDSIAAS 154 (176)
Q Consensus 118 ~~~d~vI~-D~~--~~~~~~vA~~lgiP~v~f~~~~a~~~ 154 (176)
..+|.++. |.. ......+++++|||.+-.....+.+.
T Consensus 74 ~DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gACSTg~ 113 (334)
T PRK12404 74 EDIQFFLAGDLMNQITPTSFAARTLGIPYLGLFGACSTSM 113 (334)
T ss_pred HHCCEEEEEecCCCcCcHHHHHHHhCCCccceeecCHHHH
Confidence 35889888 543 23446889999999976655444333
No 449
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=24.80 E-value=1.9e+02 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=23.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
+.+|+++.. .| .--..++++|+++||+|+.++-
T Consensus 17 ~~~ilItGa--sG--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGA--TG--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CCeEEEECC--Cc--HHHHHHHHHHHhCCCEEEEEec
Confidence 345666652 23 4567899999999999987653
No 450
>PRK06851 hypothetical protein; Provisional
Probab=24.80 E-value=2.5e+02 Score=23.87 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=34.4
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
+..+++-..||.|=-.-+..+++++.+||++|.++-.....
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 34566777899999999999999999999999998776543
No 451
>PRK06101 short chain dehydrogenase; Provisional
Probab=24.72 E-value=81 Score=24.07 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeC
Q 030502 30 PMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~ 50 (176)
--.+++++|+++|++|.++.-
T Consensus 13 iG~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGR 33 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEEC
Confidence 347899999999999888764
No 452
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=24.51 E-value=1e+02 Score=28.00 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=26.4
Q ss_pred CCCCceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 11 PRNRRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 11 ~~~~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+.+..+|+++.....| +..|..|+.+||+||++-..
T Consensus 190 ~~~~k~VaIIGaGpAG-----l~aA~~La~~G~~Vtv~e~~ 225 (652)
T PRK12814 190 PKSGKKVAIIGAGPAG-----LTAAYYLLRKGHDVTIFDAN 225 (652)
T ss_pred CCCCCEEEEECCCHHH-----HHHHHHHHHCCCcEEEEecC
Confidence 3345688888743323 67888889999999999764
No 453
>PRK15043 transcriptional regulator MirA; Provisional
Probab=24.44 E-value=3.7e+02 Score=21.45 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=33.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~ 69 (176)
+++++.+++.. -.-..--|..|.+.|++|+++..+-..+...-.++-++..+.
T Consensus 164 ~~Ll~~~~~~~-~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~ 216 (243)
T PRK15043 164 DALVVGWNIHD-TTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWC 216 (243)
T ss_pred CEEEEeCCCCC-cHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEe
Confidence 68889988776 222333355777799999999876544332223555555555
No 454
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=24.37 E-value=75 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.098 Sum_probs=23.3
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.+|+++-... --+.+|.+|+++|++|+++-..
T Consensus 4 ~dv~IIGgGi-----~G~s~A~~L~~~g~~V~lie~~ 35 (376)
T PRK11259 4 YDVIVIGLGS-----MGSAAGYYLARRGLRVLGLDRF 35 (376)
T ss_pred ccEEEECCCH-----HHHHHHHHHHHCCCeEEEEecc
Confidence 3466665433 3477899999999999998654
No 455
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=24.33 E-value=86 Score=25.98 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 26 GHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 26 GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
||+.+++. .+.|++.||++.++.++..
T Consensus 46 G~~~~~~~-~~~lq~~g~~~~i~IaD~h 72 (329)
T PRK08560 46 GHLLTMNK-LADLQKAGFKVTVLLADWH 72 (329)
T ss_pred hhhHHHHH-HHHHHHCCCeEEEEEccch
Confidence 89898777 6667778999999988753
No 456
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=24.32 E-value=70 Score=23.97 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=25.7
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~ 53 (176)
..+|+++-+.++||- .|.-|.+.|++|++..-+..
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 567999999888875 57789999999999876543
No 457
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.32 E-value=1.5e+02 Score=21.56 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=20.2
Q ss_pred CccEEEecCcchh-HHHHHhhcCCCeEEEec
Q 030502 119 SFACLITDAAWFI-AHSVANDFRLPTIVLLT 148 (176)
Q Consensus 119 ~~d~vI~D~~~~~-~~~vA~~lgiP~v~f~~ 148 (176)
+||+||....... ...--++.|+|++.+..
T Consensus 60 ~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 60 KPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 7999998653322 33445778999887754
No 458
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=24.25 E-value=54 Score=23.76 Aligned_cols=19 Identities=42% Similarity=0.594 Sum_probs=16.7
Q ss_pred CCCCChHHHHHHHHHHHhC
Q 030502 23 PFQGHINPMLQLGSILYSE 41 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~r 41 (176)
|-.|-.||++.|+-+|+=+
T Consensus 57 pe~G~tNPFLHlsmHLsI~ 75 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSIQ 75 (137)
T ss_pred cccCccchhHHHHHHHHHH
Confidence 6789999999999999864
No 459
>PRK12743 oxidoreductase; Provisional
Probab=24.22 E-value=1.6e+02 Score=22.60 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCEEEEEeC
Q 030502 30 PMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~ 50 (176)
--..+++.|+++|++|.++..
T Consensus 14 iG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 14 IGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeC
Confidence 457899999999999977653
No 460
>PRK10037 cell division protein; Provisional
Probab=24.22 E-value=1.7e+02 Score=22.84 Aligned_cols=37 Identities=16% Similarity=-0.012 Sum_probs=28.9
Q ss_pred eEEEecC-CCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 16 RVILFPL-PFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 16 ~Il~vp~-p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
.|.+... .|.|=..-...||..|+.+|++|-++=.+.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 3445553 566888999999999999999999885543
No 461
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=24.19 E-value=1.8e+02 Score=23.05 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=30.3
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
..|+++.=.|.|=..-...||..|+.+|++|-++=.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 3566776677799999999999999999998887444
No 462
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=24.16 E-value=1.3e+02 Score=23.43 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=30.2
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
|+++..||.|=-.-...|++.|...|.+|.++..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 67888999999999999999999889888877554
No 463
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=24.15 E-value=68 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=25.4
Q ss_pred ecCC-CCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 20 FPLP-FQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 20 vp~p-~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+|+| -.|.-.=+.++.++|+++ |+|++++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 3443 448888999999999776 8999999764
No 464
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=24.13 E-value=1e+02 Score=28.87 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=25.5
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~ 49 (176)
..||+++...+.| |-.||+.|+++|++|+..=
T Consensus 4 ~~~i~viG~G~sG----~salA~~L~~~G~~V~~sD 35 (809)
T PRK14573 4 SLFYHFIGIGGIG----MSALAHILLDRGYSVSGSD 35 (809)
T ss_pred cceEEEEEecHHh----HHHHHHHHHHCCCeEEEEC
Confidence 4578888877766 5567999999999998754
No 465
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=24.12 E-value=1.6e+02 Score=22.83 Aligned_cols=33 Identities=12% Similarity=0.000 Sum_probs=23.6
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+.++++..+. .--..++++|+++|++|.++..
T Consensus 10 ~k~vlVtGas~---giG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 10 GKVAVITGGGG---VLGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CCEEEEeCCCc---hHHHHHHHHHHHCCCEEEEEeC
Confidence 45566664433 2458999999999999887764
No 466
>PRK04280 arginine repressor; Provisional
Probab=24.09 E-value=58 Score=23.82 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 030502 32 LQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 32 l~La~~La~rGh~VT~i~~~ 51 (176)
-+|.+.|.++|++||=.|..
T Consensus 22 eeL~~~L~~~Gi~vTQATiS 41 (148)
T PRK04280 22 DELVDRLREEGFNVTQATVS 41 (148)
T ss_pred HHHHHHHHHcCCCeehHHHH
Confidence 57999999999999887764
No 467
>PLN02775 Probable dihydrodipicolinate reductase
Probab=24.01 E-value=1.7e+02 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=16.9
Q ss_pred CceEEEecCCCC-CChHHHHHHHHHHHhCCCEEE
Q 030502 14 RRRVILFPLPFQ-GHINPMLQLGSILYSEGFSIT 46 (176)
Q Consensus 14 ~~~Il~vp~p~~-GH~~P~l~La~~La~rGh~VT 46 (176)
..+|++...++. |+ .+++.+.+.|.++.
T Consensus 11 ~i~V~V~Ga~G~MG~-----~~~~av~~~~~~Lv 39 (286)
T PLN02775 11 AIPIMVNGCTGKMGH-----AVAEAAVSAGLQLV 39 (286)
T ss_pred CCeEEEECCCChHHH-----HHHHHHhcCCCEEE
Confidence 457887776664 43 45555555666644
No 468
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=24.01 E-value=1.5e+02 Score=23.31 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=29.8
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.|+++-=+|.|=..-...||..|+.+|++|-++=.+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D 37 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCD 37 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356666677788999999999999999999888554
No 469
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=24.00 E-value=1.6e+02 Score=22.42 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.0
Q ss_pred EEEec-CCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 17 VILFP-LPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 17 Il~vp-~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
|+++. -+|.|=..-...||..|+++|++|-++=.+.
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34443 3666888889999999999999998886553
No 470
>PRK11524 putative methyltransferase; Provisional
Probab=23.99 E-value=1.4e+02 Score=24.02 Aligned_cols=34 Identities=15% Similarity=-0.112 Sum_probs=26.7
Q ss_pred CCccEEEecCcchhH--HHHHhhcCCCeEEEecccH
Q 030502 118 DSFACLITDAAWFIA--HSVANDFRLPTIVLLTDSI 151 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~~~~a 151 (176)
++..=+|.|+|++.+ ..+|+++|=-++.+=....
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~ 241 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSE 241 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHH
Confidence 356667999999866 5778999999999876653
No 471
>PRK10481 hypothetical protein; Provisional
Probab=23.97 E-value=1.6e+02 Score=23.11 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCccEEEecCcchh--H-HHHHhhcCCCeEEEecc
Q 030502 100 PFRDCLANKLMSNSQESKDSFACLITDAAWFI--A-HSVANDFRLPTIVLLTD 149 (176)
Q Consensus 100 ~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~--~-~~vA~~lgiP~v~f~~~ 149 (176)
.+.+..+++.. .+.|+|+-|..-.. . ..+.+.+|+|++.-...
T Consensus 170 ~l~~aa~~L~~-------~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a 215 (224)
T PRK10481 170 ELIDAGKELLD-------QGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVL 215 (224)
T ss_pred HHHHHHHHhhc-------CCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHH
Confidence 34455555643 58999999985443 2 47778899999875443
No 472
>PRK06194 hypothetical protein; Provisional
Probab=23.90 E-value=81 Score=24.70 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeC
Q 030502 30 PMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~ 50 (176)
--..++++|+++|++|+++.-
T Consensus 18 IG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 18 FGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeC
Confidence 467899999999999987754
No 473
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.87 E-value=2.3e+02 Score=22.83 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=24.8
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
+.++++++.... ---.+++++|+++|++|.++.-
T Consensus 13 ~gk~~lITGas~---GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 13 SGKRAVVTGASD---GLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred CCCEEEEeCCCC---hHHHHHHHHHHHCCCEEEEEeC
Confidence 456677774433 2468899999999999988754
No 474
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=23.85 E-value=1.5e+02 Score=25.38 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=25.7
Q ss_pred CCccEEEe---cCcchhHHHHHhhcCCCeEEE-ecccHHHHH
Q 030502 118 DSFACLIT---DAAWFIAHSVANDFRLPTIVL-LTDSIAASL 155 (176)
Q Consensus 118 ~~~d~vI~---D~~~~~~~~vA~~lgiP~v~f-~~~~a~~~~ 155 (176)
....+++. +.....+..+.+++|+|++.+ .+.+.....
T Consensus 221 A~lniv~~~~~~~g~~~A~~L~e~~giP~~~~~~P~G~~~t~ 262 (429)
T cd03466 221 AKATIELGMFVDHGLSAGSYLEEEFGIPNYRLPLPIGLRATD 262 (429)
T ss_pred CcEEEEEccCccchHHHHHHHHHHHCCCeeecCCCcChHHHH
Confidence 36777776 355566778889999998876 445544333
No 475
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=23.78 E-value=1.8e+02 Score=22.08 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=26.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~ 52 (176)
+.++++++..+. ---..+|++|+.+|+.|+++....
T Consensus 4 ~~~~ilITGas~---GiG~aia~~l~~~G~~v~~~~~~~ 39 (251)
T COG1028 4 SGKVALVTGASS---GIGRAIARALAREGARVVVAARRS 39 (251)
T ss_pred CCCEEEEeCCCC---HHHHHHHHHHHHCCCeEEEEcCCC
Confidence 345666664444 456889999999999988887653
No 476
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=23.74 E-value=2.3e+02 Score=21.29 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=30.1
Q ss_pred CceEE-Eec-CCCCCChHHHHHHHHHHHh-CCCEEEEEeCCC
Q 030502 14 RRRVI-LFP-LPFQGHINPMLQLGSILYS-EGFSITIIHTTL 52 (176)
Q Consensus 14 ~~~Il-~vp-~p~~GH~~P~l~La~~La~-rGh~VT~i~~~~ 52 (176)
+.+++ ++. -++.|=-.-...||+.|+. +|++|-++=.+.
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 44544 443 4677999999999999997 699999987664
No 477
>PLN02891 IMP cyclohydrolase
Probab=23.72 E-value=1.3e+02 Score=26.99 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcCC-CCCCCC
Q 030502 27 HINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSD-DGFSET 76 (176)
Q Consensus 27 H~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~~-~~~p~~ 76 (176)
.=.=+.++|+.|.+.|+++ +.|....... ...||.+..+.+ .++|+-
T Consensus 31 DKtgi~~fAk~L~~~gveI--iSTgGTak~L-~e~Gi~v~~Vsd~TgfPEi 78 (547)
T PLN02891 31 DKTDLALLANGLQELGYTI--VSTGGTASAL-EAAGVSVTKVEELTNFPEM 78 (547)
T ss_pred cccCHHHHHHHHHHCCCEE--EEcchHHHHH-HHcCCceeeHHhccCCchh
Confidence 3344789999999998654 5554332221 236788877772 356643
No 478
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=23.67 E-value=1.8e+02 Score=22.79 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 030502 31 MLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 31 ~l~La~~La~rGh~VT~i~~~~ 52 (176)
...|++.|...||+..++.+..
T Consensus 90 rr~v~~~Lr~~GydAaiCkS~W 111 (218)
T PF04720_consen 90 RRSVMSRLRALGYDAAICKSRW 111 (218)
T ss_pred HHHHHHHHHhCCCCEEEEEecC
Confidence 4689999999999999998864
No 479
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=23.63 E-value=2e+02 Score=22.66 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=18.3
Q ss_pred CCccEEEecCcchhH----HHHHhhcCCCeEEE
Q 030502 118 DSFACLITDAAWFIA----HSVANDFRLPTIVL 146 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~----~~vA~~lgiP~v~f 146 (176)
..+|+|+.-.-.... ..+=+++|+|+++.
T Consensus 180 ~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 180 PDADALFLSCTALRAATCAQRIEQAIGKPVVTS 212 (239)
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEH
Confidence 468888775433222 34446789999775
No 480
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=23.58 E-value=1.7e+02 Score=22.18 Aligned_cols=32 Identities=16% Similarity=-0.069 Sum_probs=22.4
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
+.++++..+ |- --..++++|+++|++|..+.-
T Consensus 6 k~vlItGas-~g--IG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 6 KVALVTGAN-TG--LGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CEEEEECCC-ch--HHHHHHHHHHHCCCEEEEEcC
Confidence 444555333 32 478899999999999888764
No 481
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=23.48 E-value=88 Score=23.50 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCC
Q 030502 30 PMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~~ 51 (176)
--..+++.|+++|++|+.+...
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999998776653
No 482
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=23.48 E-value=1.8e+02 Score=21.14 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=26.9
Q ss_pred CceEEEecCCCCCCh-----HH--HHHHHHHHHhCCCE-EEEEeCCCCC
Q 030502 14 RRRVILFPLPFQGHI-----NP--MLQLGSILYSEGFS-ITIIHTTLNS 54 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~-----~P--~l~La~~La~rGh~-VT~i~~~~~~ 54 (176)
++||+++|.--+.-- .. +.+.+.+|.+.|++ |.|+|++...
T Consensus 49 KGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~W 97 (142)
T PF10673_consen 49 KGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSEW 97 (142)
T ss_pred CceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCccc
Confidence 778999885433211 11 45567899999965 7778876544
No 483
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=23.45 E-value=1.9e+02 Score=21.35 Aligned_cols=28 Identities=7% Similarity=0.259 Sum_probs=21.4
Q ss_pred CccEEEe-cC-cchhHHHHHhhcCCCeEEE
Q 030502 119 SFACLIT-DA-AWFIAHSVANDFRLPTIVL 146 (176)
Q Consensus 119 ~~d~vI~-D~-~~~~~~~vA~~lgiP~v~f 146 (176)
++|+|+. +. ..+.+..+|+.+|+|.+..
T Consensus 51 ~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~ 80 (175)
T PRK02304 51 DIDKIVGIEARGFIFGAALAYKLGIGFVPV 80 (175)
T ss_pred CCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 5888886 22 4456789999999998764
No 484
>PLN02686 cinnamoyl-CoA reductase
Probab=23.36 E-value=2.1e+02 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeC
Q 030502 29 NPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~ 50 (176)
.--..++++|+++||+|+.+.-
T Consensus 64 fIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 64 FLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 4567889999999999987643
No 485
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.36 E-value=84 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=21.7
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.++++.. +.|.+ -..+++.|+++|++|+++..
T Consensus 7 ~~ilItG--asg~i--G~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 7 RRVLITG--GSGGL--GRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CEEEEEC--CCChH--HHHHHHHHHHCCCeEEEEcC
Confidence 3454443 33433 47899999999999987653
No 486
>PRK06179 short chain dehydrogenase; Provisional
Probab=23.35 E-value=88 Score=24.24 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=22.7
Q ss_pred EEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 17 Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.++++. +.|-+ -..++++|+++|++|+.+.-.
T Consensus 6 ~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 445553 33433 689999999999999887654
No 487
>PRK08862 short chain dehydrogenase; Provisional
Probab=23.26 E-value=1.5e+02 Score=22.68 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=23.4
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
.+.++++..+. ---.+++++|+++|++|.++..
T Consensus 5 ~k~~lVtGas~---GIG~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 5 SSIILITSAGS---VLGRTISCHFARLGATLILCDQ 37 (227)
T ss_pred CeEEEEECCcc---HHHHHHHHHHHHCCCEEEEEcC
Confidence 35566664443 2378899999999999888753
No 488
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.24 E-value=91 Score=23.61 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC
Q 030502 29 NPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 29 ~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.--..++++|+++|++|.++...
T Consensus 18 ~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 18 GIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678899999999999887653
No 489
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.23 E-value=95 Score=23.33 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=20.9
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+|.++ |.||+ -+.+|..||++||+|+-+=..
T Consensus 2 ~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVI---GLGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 45555 44554 477889999999999998764
No 490
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=23.20 E-value=78 Score=26.49 Aligned_cols=31 Identities=10% Similarity=0.227 Sum_probs=22.7
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+|+++-.... -+..|.+|+++|++|+++=..
T Consensus 3 ~vvIIGaG~~-----G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 3 HIAVIGAGIT-----GVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred EEEEECCCHH-----HHHHHHHHHHCCCeEEEEeCC
Confidence 5666654333 467889999999999999543
No 491
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=23.19 E-value=87 Score=24.94 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCC
Q 030502 30 PMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 30 P~l~La~~La~rGh~VT~i~~~~ 52 (176)
--+.+|..|+.+|++|+++=-..
T Consensus 12 aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 12 AGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS
T ss_pred HHHHHHHHHHhcccccccchhcc
Confidence 35788999999999999986543
No 492
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=23.02 E-value=2.5e+02 Score=22.79 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHhhcCCCCCCCCccEEEecCcchhH-HHHHhhcCCCeEEE-----ecccHHHHHHHHhhHhHHhCCCCC
Q 030502 97 CVVPFRDCLANKLMSNSQESKDSFACLITDAAWFIA-HSVANDFRLPTIVL-----LTDSIAASLSYAAFPILREKGYLP 170 (176)
Q Consensus 97 ~~~~l~~~l~~l~~~~~~~~~~~~d~vI~D~~~~~~-~~vA~~lgiP~v~f-----~~~~a~~~~~~~~~p~l~~~~~~~ 170 (176)
..+.+++.+++..-+ +..+|+++.-....+. ..+++++|+|.=-+ .-.+...-++.+.+..+.++|.+.
T Consensus 228 ~~~~i~~~L~~~g~~-----~~did~~~~hq~~~~~~~~~~~~lgl~~~k~~~~l~~~Gn~~sasi~~~L~~~~~~g~~~ 302 (326)
T CHL00203 228 VPAVIIKCLNALNIS-----IDEVDWFILHQANKRILEAIANRLSVPNSKMITNLEKYGNTSAASIPLALDEAIQNNKIQ 302 (326)
T ss_pred HHHHHHHHHHHcCCC-----HHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhhHHHhhCcHHHHHHHHHHHHHHHhCCCC
Confidence 344455555553221 2479999999887665 57899999982221 113333445555666666666553
No 493
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=23.00 E-value=1.7e+02 Score=23.63 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=28.5
Q ss_pred eEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 030502 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (176)
Q Consensus 16 ~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~ 50 (176)
-|.++...+.|=..-+..|+++|.++| .|-++=.
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 367788888999999999999999999 6766554
No 494
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=22.98 E-value=4e+02 Score=21.33 Aligned_cols=53 Identities=8% Similarity=0.054 Sum_probs=35.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCCCCCCCCCCCCCceEEEcC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~~~~~~~~~i~~~~l~ 69 (176)
+.+|+++.+|+...-. ++.+.|.++|+++.++...........-..++.+.++
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvip 55 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIP 55 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEEC
Confidence 5689999999986553 6678898999999888764321111111346666666
No 495
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=22.87 E-value=1.8e+02 Score=17.93 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=24.7
Q ss_pred cchhHHHHHhhcCCCeEEEecccHHHHHHHHhhHhHHhCCCCC
Q 030502 128 AWFIAHSVANDFRLPTIVLLTDSIAASLSYAAFPILREKGYLP 170 (176)
Q Consensus 128 ~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~p~l~~~~~~~ 170 (176)
..+...++|+.+|+- ...++..|+-.|.++|++-
T Consensus 24 ~~Pt~rEIa~~~g~~---------S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 24 YPPTVREIAEALGLK---------STSTVQRHLKALERKGYIR 57 (65)
T ss_dssp S---HHHHHHHHTSS---------SHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCC---------ChHHHHHHHHHHHHCcCcc
Confidence 345568999999883 2447888999999999875
No 496
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.86 E-value=2.1e+02 Score=19.23 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCEEEEEeCCCCC
Q 030502 23 PFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (176)
Q Consensus 23 p~~GH~~P~l~La~~La~rGh~VT~i~~~~~~ 54 (176)
-..|+--.++++++.+.++|..+..+|.....
T Consensus 68 S~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 68 SFSGETKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred eCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 35566678899999999999998888876443
No 497
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=22.82 E-value=2.2e+02 Score=22.69 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=26.8
Q ss_pred EEEecCCCCCChH---HHHHHHHHHHhCCCEEEEEeCCC
Q 030502 17 VILFPLPFQGHIN---PMLQLGSILYSEGFSITIIHTTL 52 (176)
Q Consensus 17 Il~vp~p~~GH~~---P~l~La~~La~rGh~VT~i~~~~ 52 (176)
-+-+...+-||=. --+.|+.+|..+.++|.++..+.
T Consensus 113 gve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDG 151 (243)
T COG3959 113 GVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDG 151 (243)
T ss_pred ceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCc
Confidence 3445556667754 45788999999999999999864
No 498
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.81 E-value=1.4e+02 Score=25.91 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=24.1
Q ss_pred CCccEEEecCcchhHHHHHhhcCCCeEEE-ecccH
Q 030502 118 DSFACLITDAAWFIAHSVANDFRLPTIVL-LTDSI 151 (176)
Q Consensus 118 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f-~~~~a 151 (176)
....+++.+.....+..+.+++|+|++.+ .+.+.
T Consensus 235 A~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p~G~ 269 (455)
T PRK14476 235 SAATIAIGESMRKAAEALEARTGVPYLVFPSLTGL 269 (455)
T ss_pred CcEEEEecHHHHHHHHHHHHHhCCCeEecCCCcCh
Confidence 46777776655456678889999999976 34443
No 499
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.79 E-value=92 Score=23.39 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=22.9
Q ss_pred ceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 15 ~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
.+|++.. +.|+ --..|++.|+++||+|+++...
T Consensus 7 ~~vlItG--asg~--iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 7 RVALVTG--AARG--LGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CEEEEeC--CCch--HHHHHHHHHHHCCCeEEEEeCC
Confidence 3555543 4454 5688999999999998775543
No 500
>PLN02487 zeta-carotene desaturase
Probab=22.78 E-value=2.2e+02 Score=25.58 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=25.1
Q ss_pred CceEEEecCCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 030502 14 RRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (176)
Q Consensus 14 ~~~Il~vp~p~~GH~~P~l~La~~La~rGh~VT~i~~~ 51 (176)
+.+|+++.. | .--+..|..|+.+||+||++=..
T Consensus 75 ~~~v~iiG~---G--~~Gl~~a~~L~~~g~~v~i~E~~ 107 (569)
T PLN02487 75 KLKVAIIGA---G--LAGMSTAVELLDQGHEVDIYESR 107 (569)
T ss_pred CCeEEEECC---C--HHHHHHHHHHHhCCCeeEEEecC
Confidence 448887752 3 33788899999999999998654
Done!