RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030503
(176 letters)
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
Crs2 {Maize (Zea mays) [TaxId: 4577]}
Length = 191
Score = 96.3 bits (239), Expect = 5e-26
Identities = 49/88 (55%), Positives = 70/88 (79%)
Query: 75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
PWLI GLGNPG +Y GTRHNVGFEMVD IA EGI+++++ K+ G G IG VPV++ K
Sbjct: 3 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 62
Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLV 162
PQ++MN SG+++G + +YY++PL+ +L+
Sbjct: 63 PQSYMNYSGEAIGPLAAYYQVPLRHILL 90
>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
[TaxId: 562]}
Length = 193
Score = 88.9 bits (220), Expect = 3e-23
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKP 135
LIVGL NPG +Y TRHN G VD +AE + F + + +G V L P
Sbjct: 4 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLV 162
TFMN SG++V ++ S+++I ++LV
Sbjct: 64 TTFMNLSGKAVAAMASFFRINPDEILV 90
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 353
Score = 31.2 bits (70), Expect = 0.059
Identities = 12/74 (16%), Positives = 18/74 (24%), Gaps = 6/74 (8%)
Query: 70 QQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFI---- 125
Q + I K Y D ++ +GI V + G
Sbjct: 250 SQGNSSYAIYERQGQNK-YVADFQITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQN 308
Query: 126 -GNVPVMLAKPQTF 138
N+ Q F
Sbjct: 309 GENIDHGQKANQNF 322
>d1gx1a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase IspF {Escherichia coli [TaxId: 562]}
Length = 157
Score = 27.5 bits (61), Expect = 0.65
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIGN 127
+M IAE G + VN KA GF G
Sbjct: 112 QMRVFIAEDLGCHMDDVNVKATTTEKLGFTGR 143
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Length = 158
Score = 26.3 bits (58), Expect = 1.6
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIGN 127
+M +A V+ +N KA GF G
Sbjct: 112 DMRQVLAADLNADVADINVKATTTEKLGFTGR 143
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
{Bacillus subtilis [TaxId: 1423]}
Length = 68
Score = 25.1 bits (55), Expect = 1.6
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 85 GKQYNGTRHNVGFEMVDAIAEAEGISVS 112
+ N + ++ ++ +SV
Sbjct: 32 SSIERNLQTNPSIQFLEKVSAVLDVSVH 59
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 302
Score = 26.3 bits (56), Expect = 1.9
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 99 MVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
+V + + G + + G G NV V LA+
Sbjct: 11 LVALVPQEPGHLRGKRLLEVYVG-GAEVNVAVALAR 45
>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP
synthase domain {Campylobacter jejuni [TaxId: 197]}
Length = 163
Score = 25.9 bits (57), Expect = 2.0
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 98 EMVDAIAEAEGISVSSVNFKA--HFGKGFIGN 127
M IA + +N KA GFIG
Sbjct: 113 AMQSNIAHTLDLDEFRINVKATTTEKLGFIGR 144
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
{Escherichia coli [TaxId: 562]}
Length = 347
Score = 25.6 bits (56), Expect = 3.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 86 KQYNGTRHNVGFEMVDAIAEAEGISVSSV 114
K Y G N FE + G+ V++V
Sbjct: 95 KNYTGDILN--FETATELLHDSGVKVTTV 121
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 308
Score = 25.2 bits (53), Expect = 5.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 99 MVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
+++ A + G F+ H G N V K
Sbjct: 10 LIEFNALSPGPLRHVSYFEKHVA-GSEANYCVAFIK 44
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 126
Score = 24.0 bits (52), Expect = 9.0
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 72 QQHPWLIVGLGNPGKQ-YNGTRHNVGFEMVDAI 103
++ IVG+G G + FE+
Sbjct: 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFF 34
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 24.2 bits (51), Expect = 9.8
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 32 LCCWGRRTRMSRSPSNSTIRNFSSSIS 58
C G+ S + + +S ++
Sbjct: 320 TLCCGKNPLGDDEASTTVSKTETSQVA 346
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.400
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 619,655
Number of extensions: 25514
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 13
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)